BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] (188 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040094|gb|ACT56890.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 188 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/188 (100%), Positives = 188/188 (100%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP Sbjct: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST Sbjct: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 Query: 181 SENQDKAA 188 SENQDKAA Sbjct: 181 SENQDKAA 188 >gi|315122139|ref|YP_004062628.1| transcriptional regulator CarD family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495541|gb|ADR52140.1| transcriptional regulator CarD family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 188 Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 171/188 (90%), Positives = 179/188 (95%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ MRQGF+TGEHIVYP HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP Sbjct: 1 MTVQQKKSMMRQGFKTGEHIVYPTHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+RT++QPEKSYSERQLYESALNRMVRE+AAVNSISEPEAI+LIEVNLSSK K EK T Sbjct: 121 DLYRTENQPEKSYSERQLYESALNRMVREVAAVNSISEPEAIDLIEVNLSSKRPKDEKPT 180 Query: 181 SENQDKAA 188 +ENQ KAA Sbjct: 181 NENQCKAA 188 >gi|222150214|ref|YP_002551171.1| transcriptional regulator CarD family [Agrobacterium vitis S4] gi|221737196|gb|ACM38159.1| transcriptional regulator CarD family [Agrobacterium vitis S4] Length = 223 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 142/190 (74%), Positives = 162/190 (85%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI FDKDKM LKVP Sbjct: 35 MTTQQKKSSTRQGFKTGEAIVYPAHGVGTITAIEEQEVAGMKLELFVIDFDKDKMRLKVP 94 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 95 VTKAVTIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 154 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R + QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL +K K KS Sbjct: 155 DLFRAEHQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNL-AKGPKRGKSV 213 Query: 181 SEN--QDKAA 188 E+ Q++AA Sbjct: 214 EEDETQEEAA 223 >gi|15890014|ref|NP_355695.1| CarD family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157987|gb|AAK88480.1| transcriptional regulator, CarD family [Agrobacterium tumefaciens str. C58] Length = 189 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 140/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNL-AKGPKRGKTV 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDSQDEAA 189 >gi|227823778|ref|YP_002827751.1| putative transcriptional regulator, CarD family [Sinorhizobium fredii NGR234] gi|227342780|gb|ACP26998.1| putative transcriptional regulator, CarD family [Sinorhizobium fredii NGR234] Length = 189 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 139/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI FDKDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFDKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEANL-NKGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDTQDEAA 189 >gi|325294135|ref|YP_004279999.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3] gi|325061988|gb|ADY65679.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3] Length = 189 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNL-AKGPKRGKAV 179 Query: 181 SEN--QDKAA 188 E+ Q++AA Sbjct: 180 EEDDSQEEAA 189 >gi|15967010|ref|NP_387363.1| hypothetical protein SMc03874 [Sinorhizobium meliloti 1021] gi|307302478|ref|ZP_07582235.1| transcriptional regulator, CarD family [Sinorhizobium meliloti BL225C] gi|307316192|ref|ZP_07595636.1| transcriptional regulator, CarD family [Sinorhizobium meliloti AK83] gi|15076283|emb|CAC47836.1| Hypothetical protein SMc03874 [Sinorhizobium meliloti 1021] gi|306898032|gb|EFN28774.1| transcriptional regulator, CarD family [Sinorhizobium meliloti AK83] gi|306903148|gb|EFN33738.1| transcriptional regulator, CarD family [Sinorhizobium meliloti BL225C] Length = 189 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 138/190 (72%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLVEANL-NKGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDAQDEAA 189 >gi|222087730|ref|YP_002546267.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725178|gb|ACM28334.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 190 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 141/191 (73%), Positives = 161/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ A R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSAARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNL-NKGPKRGKV 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 VEEDDSQDEAA 190 >gi|116254341|ref|YP_770179.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|209551385|ref|YP_002283302.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241206827|ref|YP_002977923.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258989|emb|CAK10098.1| putative CarD family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|209537141|gb|ACI57076.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240860717|gb|ACS58384.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 190 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 140/191 (73%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNL-NKGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|150398306|ref|YP_001328773.1| CarD family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029821|gb|ABR61938.1| transcriptional regulator, CarD family [Sinorhizobium medicae WSM419] Length = 189 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 137/190 (72%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E +L +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEAHL-NKGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDAQDEAA 189 >gi|86359604|ref|YP_471496.1| CarD family transcriptional regulator [Rhizobium etli CFN 42] gi|86283706|gb|ABC92769.1| probable transcriptional regulator protein, CarD family [Rhizobium etli CFN 42] Length = 190 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 139/191 (72%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNL-NKGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|327191760|gb|EGE58762.1| CarD family transcriptional regulator [Rhizobium etli CNPAF512] Length = 199 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 139/191 (72%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 10 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 69 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 70 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 129 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL +K K K+ Sbjct: 130 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNL-NKGPKRGKA 188 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 189 IEEDDSQDEAA 199 >gi|190893877|ref|YP_001980419.1| transcriptional regulator protein, CarD family [Rhizobium etli CIAT 652] gi|190699156|gb|ACE93241.1| probable transcriptional regulator protein, CarD family [Rhizobium etli CIAT 652] Length = 190 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/191 (71%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+ M REIAAVN++SE +A+ L+E NL +K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDSMAREIAAVNNMSETDAVRLVETNL-NKGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|110635707|ref|YP_675915.1| CarD family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286691|gb|ABG64750.1| transcriptional regulator, CarD family [Chelativorans sp. BNC1] Length = 190 Score = 270 bits (691), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 130/186 (69%), Positives = 155/186 (83%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ A RQGF+TGE IVYPAHGVG I I++QEVAG KLE FVI F KDKM LKVP Sbjct: 1 MATQQKKSAQRQGFKTGEFIVYPAHGVGQIVAIEDQEVAGHKLELFVIDFQKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 61 VGKATAIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ + K+ Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIETNLAKGPRRGTKAE 180 Query: 181 SENQDK 186 +++ +K Sbjct: 181 NDDAEK 186 >gi|163759997|ref|ZP_02167081.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43] gi|162282955|gb|EDQ33242.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43] Length = 189 Score = 270 bits (690), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 159/190 (83%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE FVERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKASTIGMRKLSETDFVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM RE+AAVN +S+ EA+ LIE NL +K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMARELAAVNKMSDTEAVRLIETNL-NKGPKRGKAA 179 Query: 181 SEN--QDKAA 188 E+ Q++AA Sbjct: 180 DEDGAQEEAA 189 >gi|297180170|gb|ADI16392.1| transcriptional regulators, similar to M. xanthus card [uncultured bacterium HF130_12L15] Length = 193 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 130/187 (69%), Positives = 154/187 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ A R GF+T E+IVYPAHGVG I I+EQEVAG KLE FVI F KDKM LKVP Sbjct: 1 MATQQKKTAARNGFKTAEYIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFQKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 61 VAKAASIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPRRGVKAD 180 Query: 181 SENQDKA 187 +E + +A Sbjct: 181 NEGEPEA 187 >gi|90420275|ref|ZP_01228183.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans SI85-9A1] gi|90335609|gb|EAS49359.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 127/174 (72%), Positives = 147/174 (84%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVPV KA Sbjct: 4 QKKASNRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKA 63 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +GMRKLSE FVER+LK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVRDL+R Sbjct: 64 ESVGMRKLSETDFVERSLKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVRDLYR 123 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 DSQPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE+NL+ + K Sbjct: 124 ADSQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVQLIELNLNKGPKRVAK 177 >gi|319781058|ref|YP_004140534.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166946|gb|ADV10484.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 265 bits (676), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/179 (72%), Positives = 149/179 (83%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T Q+K A R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP Sbjct: 4 ITPQKKSTAARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFSKDKMRLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKA 182 >gi|13473303|ref|NP_104870.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099] gi|260461457|ref|ZP_05809704.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum WSM2075] gi|14024051|dbj|BAB50656.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099] gi|259032527|gb|EEW33791.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum WSM2075] Length = 193 Score = 263 bits (672), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 128/179 (71%), Positives = 148/179 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T Q+K R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP Sbjct: 4 ITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKA 182 >gi|17986562|ref|NP_539196.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|17982170|gb|AAL51460.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] Length = 207 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 131/186 (70%), Positives = 154/186 (82%), Gaps = 2/186 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K K K+ Sbjct: 137 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGPKRGKA 195 Query: 180 TSENQD 185 +E D Sbjct: 196 EAELDD 201 >gi|23502623|ref|NP_698750.1| transcriptional regulator [Brucella suis 1330] gi|82700550|ref|YP_415124.1| transcription factor CarD [Brucella melitensis biovar Abortus 2308] gi|148558867|ref|YP_001259610.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|161619691|ref|YP_001593578.1| hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365] gi|163845343|ref|YP_001622998.1| hypothetical protein BSUIS_B1242 [Brucella suis ATCC 23445] gi|189024848|ref|YP_001935616.1| CarD family transcriptional regulator [Brucella abortus S19] gi|225853216|ref|YP_002733449.1| hypothetical protein BMEA_A1818 [Brucella melitensis ATCC 23457] gi|254694417|ref|ZP_05156245.1| hypothetical protein Babob3T_07112 [Brucella abortus bv. 3 str. Tulya] gi|254698076|ref|ZP_05159904.1| hypothetical protein Babob28_10303 [Brucella abortus bv. 2 str. 86/8/59] gi|254700418|ref|ZP_05162246.1| hypothetical protein Bsuib55_06119 [Brucella suis bv. 5 str. 513] gi|254703537|ref|ZP_05165365.1| hypothetical protein Bsuib36_06359 [Brucella suis bv. 3 str. 686] gi|254708586|ref|ZP_05170414.1| hypothetical protein BpinM_16983 [Brucella pinnipedialis M163/99/10] gi|254708772|ref|ZP_05170583.1| hypothetical protein BpinB_00646 [Brucella pinnipedialis B2/94] gi|254714615|ref|ZP_05176426.1| hypothetical protein BcetM6_15022 [Brucella ceti M644/93/1] gi|254717513|ref|ZP_05179324.1| hypothetical protein BcetM_14151 [Brucella ceti M13/05/1] gi|254719759|ref|ZP_05181570.1| hypothetical protein Bru83_09478 [Brucella sp. 83/13] gi|256030298|ref|ZP_05443912.1| hypothetical protein BpinM2_06566 [Brucella pinnipedialis M292/94/1] gi|256045367|ref|ZP_05448261.1| hypothetical protein Bmelb1R_12807 [Brucella melitensis bv. 1 str. Rev.1] gi|256061797|ref|ZP_05451932.1| hypothetical protein Bneo5_15748 [Brucella neotomae 5K33] gi|256255678|ref|ZP_05461214.1| hypothetical protein BcetB_15638 [Brucella ceti B1/94] gi|256258180|ref|ZP_05463716.1| hypothetical protein Babob9C_12716 [Brucella abortus bv. 9 str. C68] gi|256263295|ref|ZP_05465827.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9] gi|256370172|ref|YP_003107683.1| transcriptional regulator, CarD family [Brucella microti CCM 4915] gi|260167972|ref|ZP_05754783.1| transcriptional regulator, CarD family protein [Brucella sp. F5/99] gi|260547126|ref|ZP_05822864.1| transcription factor CarD [Brucella abortus NCTC 8038] gi|260565739|ref|ZP_05836222.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M] gi|260568843|ref|ZP_05839311.1| transcription factor CarD [Brucella suis bv. 4 str. 40] gi|260755460|ref|ZP_05867808.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758682|ref|ZP_05871030.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762517|ref|ZP_05874854.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884478|ref|ZP_05896092.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261214731|ref|ZP_05929012.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219348|ref|ZP_05933629.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261222884|ref|ZP_05937165.1| transcriptional regulator [Brucella ceti B1/94] gi|261316093|ref|ZP_05955290.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316265|ref|ZP_05955462.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322409|ref|ZP_05961606.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261325799|ref|ZP_05964996.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750916|ref|ZP_05994625.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754170|ref|ZP_05997879.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757414|ref|ZP_06001123.1| transcription factor CarD [Brucella sp. F5/99] gi|265984778|ref|ZP_06097513.1| transcriptional regulator [Brucella sp. 83/13] gi|265987329|ref|ZP_06099886.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265991795|ref|ZP_06104352.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995635|ref|ZP_06108192.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265998843|ref|ZP_06111400.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306839455|ref|ZP_07472263.1| transcriptional regulator [Brucella sp. NF 2653] gi|306844751|ref|ZP_07477336.1| transcriptional regulator [Brucella sp. BO1] gi|23348628|gb|AAN30665.1| transcriptional regulator, putative [Brucella suis 1330] gi|82616651|emb|CAJ11733.1| Transcription factor CarD [Brucella melitensis biovar Abortus 2308] gi|148370124|gb|ABQ60103.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|161336502|gb|ABX62807.1| Hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365] gi|163676066|gb|ABY40176.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020420|gb|ACD73142.1| Transcription factor CarD [Brucella abortus S19] gi|225641581|gb|ACO01495.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000335|gb|ACU48734.1| transcriptional regulator, CarD family [Brucella microti CCM 4915] gi|260095491|gb|EEW79369.1| transcription factor CarD [Brucella abortus NCTC 8038] gi|260151112|gb|EEW86207.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M] gi|260154227|gb|EEW89309.1| transcription factor CarD [Brucella suis bv. 4 str. 40] gi|260669000|gb|EEX55940.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672943|gb|EEX59764.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675568|gb|EEX62389.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874006|gb|EEX81075.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916338|gb|EEX83199.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921468|gb|EEX88121.1| transcriptional regulator [Brucella ceti B1/94] gi|260924437|gb|EEX91005.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261295099|gb|EEX98595.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295488|gb|EEX98984.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261301779|gb|EEY05276.1| transcriptional regulator [Brucella neotomae 5K33] gi|261305119|gb|EEY08616.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737398|gb|EEY25394.1| transcription factor CarD [Brucella sp. F5/99] gi|261740669|gb|EEY28595.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261743923|gb|EEY31849.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262553532|gb|EEZ09301.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262766919|gb|EEZ12537.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263002751|gb|EEZ15154.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263093262|gb|EEZ17359.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9] gi|264659526|gb|EEZ29787.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663370|gb|EEZ33631.1| transcriptional regulator [Brucella sp. 83/13] gi|306274923|gb|EFM56693.1| transcriptional regulator [Brucella sp. BO1] gi|306405400|gb|EFM61671.1| transcriptional regulator [Brucella sp. NF 2653] gi|326409773|gb|ADZ66838.1| Transcription factor CarD [Brucella melitensis M28] gi|326539490|gb|ADZ87705.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 191 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/186 (70%), Positives = 154/186 (82%), Gaps = 2/186 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGPKRGKA 179 Query: 180 TSENQD 185 +E D Sbjct: 180 EAELDD 185 >gi|62290636|ref|YP_222429.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|254689925|ref|ZP_05153179.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254730960|ref|ZP_05189538.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256114331|ref|ZP_05455069.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256160471|ref|ZP_05458160.1| transcriptional regulator [Brucella ceti M490/95/1] gi|297249030|ref|ZP_06932738.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|62196768|gb|AAX75068.1| hypothetical transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|297174163|gb|EFH33520.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 194 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/186 (70%), Positives = 154/186 (82%), Gaps = 2/186 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 123 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K K K+ Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGPKRGKA 182 Query: 180 TSENQD 185 +E D Sbjct: 183 EAELDD 188 >gi|225628327|ref|ZP_03786361.1| transcriptional regulator [Brucella ceti str. Cudo] gi|225616173|gb|EEH13221.1| transcriptional regulator [Brucella ceti str. Cudo] Length = 250 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 131/186 (70%), Positives = 154/186 (82%), Gaps = 2/186 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 60 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 119 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 120 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 179 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K K K+ Sbjct: 180 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGPKRGKA 238 Query: 180 TSENQD 185 +E D Sbjct: 239 EAELDD 244 >gi|294851010|ref|ZP_06791686.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294821653|gb|EFG38649.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 194 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/186 (69%), Positives = 153/186 (82%), Gaps = 2/186 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMW RRAQEYDAKINSGDLI+I+EVV Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWLRRAQEYDAKINSGDLISISEVV 123 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K K K+ Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGPKRGKA 182 Query: 180 TSENQD 185 +E D Sbjct: 183 EAELDD 188 >gi|239832849|ref|ZP_04681178.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825116|gb|EEQ96684.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 209 Score = 256 bits (654), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 125/171 (73%), Positives = 145/171 (84%), Gaps = 1/171 (0%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ Sbjct: 137 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLA 187 >gi|114705884|ref|ZP_01438787.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506] gi|114538730|gb|EAU41851.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506] Length = 204 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/165 (73%), Positives = 142/165 (86%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 K+ + +GF+TGE IVYPAHGVG I I+EQEVAGMKLE FV+ F+KDKM LKVPV KA Sbjct: 5 KKASASKGFKTGESIVYPAHGVGKIVAIEEQEVAGMKLELFVVDFEKDKMRLKVPVAKAK 64 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +GMRKLSE FV+RALK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVRDL+R Sbjct: 65 SVGMRKLSETDFVDRALKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVRDLYRA 124 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 D+QPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE NL+ Sbjct: 125 DTQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVRLIEENLN 169 >gi|153008468|ref|YP_001369683.1| CarD family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560356|gb|ABS13854.1| transcriptional regulator, CarD family [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/171 (73%), Positives = 145/171 (84%), Gaps = 1/171 (0%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ + R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ Sbjct: 121 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLA 171 >gi|304394153|ref|ZP_07376076.1| CarD family transcriptional regulator [Ahrensia sp. R2A130] gi|303293593|gb|EFL87970.1| CarD family transcriptional regulator [Ahrensia sp. R2A130] Length = 193 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/182 (65%), Positives = 142/182 (78%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 K+ RQGF+TGE IVYPAHGVG ITEI++QEVAG +LE FVI F KDKM L+VPV K Sbjct: 4 KKATQRQGFKTGEFIVYPAHGVGQITEIEQQEVAGFELELFVIEFAKDKMTLRVPVPKIE 63 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +GMRKL+E V+++L V+G+AR+KRTMWSRRAQEYDAKINSGDLI IAEVVRDL R+ Sbjct: 64 SVGMRKLAEPKLVDKSLMTVQGRARIKRTMWSRRAQEYDAKINSGDLIQIAEVVRDLFRS 123 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185 D+QPE+SYSERQLYE+AL RM REI+ V ISE EA+ LIE NL+ + K E +D Sbjct: 124 DTQPEQSYSERQLYEAALERMAREISVVKKISETEAVQLIEANLAKGPRRGPKPEGEEED 183 Query: 186 KA 187 A Sbjct: 184 GA 185 >gi|220921710|ref|YP_002497011.1| CarD family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946316|gb|ACL56708.1| transcriptional regulator, CarD family [Methylobacterium nodulans ORS 2060] Length = 197 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/179 (65%), Positives = 150/179 (83%), Gaps = 1/179 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR Sbjct: 61 TAKANAVGMRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L +KS + KS Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSL-AKSPRRAKS 178 >gi|170742914|ref|YP_001771569.1| CarD family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197188|gb|ACA19135.1| transcriptional regulator, CarD family [Methylobacterium sp. 4-46] Length = 197 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 114/170 (67%), Positives = 145/170 (85%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR Sbjct: 61 TAKANAVGMRKLAEPDLVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L+ Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSLA 170 >gi|154244145|ref|YP_001415103.1| CarD family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158230|gb|ABS65446.1| transcriptional regulator, CarD family [Xanthobacter autotrophicus Py2] Length = 206 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/159 (70%), Positives = 141/159 (88%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R GF+TGEHIVYP+HGVG I I+EQEVAG KLE FVI+F+KDKM L+VPV K +GMR Sbjct: 21 RLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVPKIATVGMR 80 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE + V+++L+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVVRDL+R+D+QPE Sbjct: 81 KLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDLYRSDAQPE 140 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +SYSERQLYE+AL+RM RE++AVN+I+E EA+ LIE NL Sbjct: 141 QSYSERQLYEAALDRMARELSAVNNITETEAVKLIEQNL 179 >gi|298293646|ref|YP_003695585.1| CarD family transcriptional regulator [Starkeya novella DSM 506] gi|296930157|gb|ADH90966.1| transcriptional regulator, CarD family [Starkeya novella DSM 506] Length = 200 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/160 (70%), Positives = 142/160 (88%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 +RQGF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI F+KDKM L+VPV K +GM Sbjct: 11 IRQGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVIHFEKDKMTLRVPVPKIASVGM 70 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 RKLSE +++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVVRDL+R+++QP Sbjct: 71 RKLSEPTILKKALETLKGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDLYRSEAQP 130 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+SYSERQLYE+AL+RM RE+AAV++++E EAI LIE NL Sbjct: 131 EQSYSERQLYEAALDRMARELAAVDNLTETEAIKLIEQNL 170 >gi|158425667|ref|YP_001526959.1| transcription factor protein [Azorhizobium caulinodans ORS 571] gi|158332556|dbj|BAF90041.1| transcription factor protein [Azorhizobium caulinodans ORS 571] Length = 198 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/169 (67%), Positives = 143/169 (84%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M+ ++ R GF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI+F+KDKM L+VP Sbjct: 1 MSTKKSSAQARLGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVISFEKDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKLSE V +AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDLIAI+EVVR Sbjct: 61 VPKIASVGMRKLSEGPVVTKALETLKGRARVKRTMWSRRAQEYEAKINSGDLIAISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 DL+R+D+QPE+SYSERQLYE+AL+RM RE++AV +I+E E++ LIE NL Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMARELSAVQNITETESVKLIEQNL 169 >gi|328542018|ref|YP_004302127.1| CarD-like transcriptional regulator family [polymorphum gilvum SL003B-26A1] gi|326411768|gb|ADZ68831.1| CarD-like transcriptional regulator family [Polymorphum gilvum SL003B-26A1] Length = 192 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/165 (69%), Positives = 140/165 (84%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 K+ A RQGF+TGEHIVYP+HGVG IT I+EQ VAG LE VI+F+KDKM L+VPV K Sbjct: 6 KKAAQRQGFKTGEHIVYPSHGVGQITAIEEQSVAGHSLELLVISFEKDKMTLRVPVAKIA 65 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +GMRKL++A V++AL+ VRG+ R+KRTMWSRRAQEY+AKINSGDLI+I+EVVRDL+R+ Sbjct: 66 TVGMRKLADAPTVKKALETVRGRPRIKRTMWSRRAQEYEAKINSGDLISISEVVRDLYRS 125 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 D+QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ Sbjct: 126 DTQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLA 170 >gi|49474702|ref|YP_032744.1| transcriptional factor regulator [Bartonella quintana str. Toulouse] gi|49240206|emb|CAF26674.1| transcriptional factor regulator [Bartonella quintana str. Toulouse] Length = 194 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 121/187 (64%), Positives = 146/187 (78%), Gaps = 1/187 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHRTSSNAKGFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R++ QPE+SYSERQLY +AL+RM REIA +NS+SE EA+NLIE++LS+K K E T Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALDRMAREIAVINSLSETEAVNLIEMHLSNK-PKCEFKT 179 Query: 181 SENQDKA 187 ++ A Sbjct: 180 KSDETNA 186 >gi|240851257|ref|YP_002972660.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup] gi|240268380|gb|ACS51968.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup] Length = 194 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 120/188 (63%), Positives = 147/188 (78%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ +GMRKLS + VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKALSVGMRKLSASDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K + K+ Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180 Query: 181 SENQDKAA 188 E D+++ Sbjct: 181 REETDESS 188 >gi|49476179|ref|YP_034220.1| transcriptional factor regulator [Bartonella henselae str. Houston-1] gi|49238987|emb|CAF28287.1| Transcriptional factor regulator [Bartonella henselae str. Houston-1] Length = 194 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/179 (67%), Positives = 140/179 (78%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSNAKGFSTSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL R+D QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS K + K+ Sbjct: 121 DLFRSDLQPEQSYSERQLYIAALERMAREIAVINSLSETEAINLIEMHLSQKPKRQFKT 179 >gi|170750107|ref|YP_001756367.1| CarD family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656629|gb|ACB25684.1| transcriptional regulator, CarD family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/177 (64%), Positives = 149/177 (84%), Gaps = 1/177 (0%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +GMR Sbjct: 12 RQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMR 71 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KL+E V++AL L+ G+AR+KRTMWSRRAQEY+AKINSGDL+A+ EVVRDL R+++QPE Sbjct: 72 KLAEPELVKKALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPE 131 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 +SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L +KS + KS +E + +A Sbjct: 132 QSYSERQLYEAALDRIVREISSVNRITETEALKLIEQSL-AKSPRRAKSEAEPEAEA 187 >gi|188583533|ref|YP_001926978.1| CarD family transcriptional regulator [Methylobacterium populi BJ001] gi|179347031|gb|ACB82443.1| transcriptional regulator, CarD family [Methylobacterium populi BJ001] Length = 198 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/171 (64%), Positives = 145/171 (84%), Gaps = 1/171 (0%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V Sbjct: 1 MTTAKKTTAAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 RDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ Sbjct: 121 RDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNRITETEALKLIEQSLA 171 >gi|163869173|ref|YP_001610425.1| transcriptional factor [Bartonella tribocorum CIP 105476] gi|161018872|emb|CAK02430.1| transcriptional factor [Bartonella tribocorum CIP 105476] Length = 194 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/190 (64%), Positives = 145/190 (76%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ +GMRKLS VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKALSVGMRKLSAGDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS---KTE 177 DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K KTE Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180 Query: 178 KSTSENQDKA 187 + + KA Sbjct: 181 REETVENSKA 190 >gi|307943601|ref|ZP_07658945.1| transcription factor CarD [Roseibium sp. TrichSKD4] gi|307773231|gb|EFO32448.1| transcription factor CarD [Roseibium sp. TrichSKD4] Length = 194 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 118/194 (60%), Positives = 146/194 (75%), Gaps = 6/194 (3%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F+KDKM L+VP Sbjct: 1 MASTTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEKDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR Sbjct: 61 VAKIASVGMRKLGDPDAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK----- 175 DL+R+DSQPE+SYSERQLYE+AL+R+ REIAAVN SE EA IE L ++ Sbjct: 121 DLYRSDSQPEQSYSERQLYEAALDRLAREIAAVNKCSETEATKQIEQTLEKSPNRPKAPA 180 Query: 176 -TEKSTSENQDKAA 188 + + S+ Q++AA Sbjct: 181 EADSTGSDGQEEAA 194 >gi|254504462|ref|ZP_05116613.1| CarD-like transcriptional regulator family [Labrenzia alexandrii DFL-11] gi|222440533|gb|EEE47212.1| CarD-like transcriptional regulator family [Labrenzia alexandrii DFL-11] Length = 199 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 115/175 (65%), Positives = 139/175 (79%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F++DKM L+VP Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ V+G+ R+KRTMWSRRAQEY+AKINSGDLIAI+EVVR Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVQGRPRIKRTMWSRRAQEYEAKINSGDLIAISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 DL R++SQPE+SYSERQLYE+AL+RM REIAAVN SE EAI IE NL+ S+ Sbjct: 121 DLFRSESQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAIKEIEQNLAKSPSR 175 >gi|163853280|ref|YP_001641323.1| transcription factor CarD [Methylobacterium extorquens PA1] gi|163664885|gb|ABY32252.1| transcription factor CarD [Methylobacterium extorquens PA1] Length = 196 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 109/162 (67%), Positives = 140/162 (86%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +G Sbjct: 10 AGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVG 69 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLI++ EVVRDL R+++Q Sbjct: 70 MRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLISVTEVVRDLFRSEAQ 129 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 PE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ Sbjct: 130 PEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLA 171 >gi|118591279|ref|ZP_01548677.1| transcriptional regulator, CarD family protein [Stappia aggregata IAM 12614] gi|118435951|gb|EAV42594.1| transcriptional regulator, CarD family protein [Stappia aggregata IAM 12614] Length = 194 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/175 (65%), Positives = 140/175 (80%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ+VAG LE VI F++DKM L+VP Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQKVAGHSLELLVIVFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 DL R+++QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ S+ Sbjct: 121 DLFRSENQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLAKSPSR 175 >gi|218532096|ref|YP_002422912.1| CarD family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140688|ref|YP_002965168.1| transcriptional regulator, CarD family [Methylobacterium extorquens AM1] gi|218524399|gb|ACK84984.1| transcriptional regulator, CarD family [Methylobacterium chloromethanicum CM4] gi|240010665|gb|ACS41891.1| transcriptional regulator, CarD family [Methylobacterium extorquens AM1] Length = 196 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 108/162 (66%), Positives = 140/162 (86%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +G Sbjct: 10 AGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVG 69 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVVRDL R+++Q Sbjct: 70 MRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVVRDLFRSEAQ 129 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 PE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ Sbjct: 130 PEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLA 171 >gi|254563203|ref|YP_003070298.1| carD family transcriptional regulator [Methylobacterium extorquens DM4] gi|254270481|emb|CAX26481.1| transcriptional regulator, CarD family [Methylobacterium extorquens DM4] Length = 224 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 108/162 (66%), Positives = 140/162 (86%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +G Sbjct: 38 AGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVG 97 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVVRDL R+++Q Sbjct: 98 MRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVVRDLFRSEAQ 157 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 PE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ Sbjct: 158 PEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLA 199 >gi|319409358|emb|CBI83002.1| transcriptional factor [Bartonella schoenbuchensis R1] Length = 194 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/179 (64%), Positives = 143/179 (79%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q+K+ + +GF T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQRKKTSSVKGFSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE+ VERALK ++GKARVKR MWSRRAQEYD KINSG+L+ IAEVVR Sbjct: 61 VAKALSIGMRKLSESDLVERALKTLQGKARVKRAMWSRRAQEYDTKINSGNLVFIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL R++ Q E+SYSERQLY +AL+RM REIA +N++SE EAINLIE +L+ +S + K+ Sbjct: 121 DLFRSELQSEQSYSERQLYAAALDRMAREIAIINNLSETEAINLIETHLTKESKRKFKA 179 >gi|209883217|ref|YP_002287074.1| transcriptional regulator of CarD family [Oligotropha carboxidovorans OM5] gi|209871413|gb|ACI91209.1| transcriptional regulator of CarD family [Oligotropha carboxidovorans OM5] Length = 323 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 107/160 (66%), Positives = 135/160 (84%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG +LE FVI+F KDKM L+VP K I++GMR Sbjct: 125 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGARLELFVISFIKDKMTLRVPTAKVINVGMR 184 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V+RAL ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 185 KLSDPALVKRALDTLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 244 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V I+E EAI +E NL+ Sbjct: 245 QSYSERQLYEAALDRLSREIAVVQHITETEAIKEVEANLA 284 >gi|75674610|ref|YP_317031.1| transcription factor CarD [Nitrobacter winogradskyi Nb-255] gi|74419480|gb|ABA03679.1| transcriptional regulator, CarD family [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 107/160 (66%), Positives = 134/160 (83%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+TGE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 93 RQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMR 152 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 153 KLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 212 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ Sbjct: 213 QSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLA 252 >gi|115522154|ref|YP_779065.1| CarD family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516101|gb|ABJ04085.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisA53] Length = 358 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 107/160 (66%), Positives = 132/160 (82%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 168 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVTNVGMR 227 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R+DSQPE Sbjct: 228 KLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPE 287 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ Sbjct: 288 QSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLA 327 >gi|299132816|ref|ZP_07026011.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2] gi|298592953|gb|EFI53153.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2] Length = 403 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 106/160 (66%), Positives = 135/160 (84%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG LE FVI+F KDKM L+VP K I++GMR Sbjct: 207 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGATLELFVISFIKDKMTLRVPTAKVINVGMR 266 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 267 KLSDPALVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 326 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V I+E EA+ +E NL+ Sbjct: 327 QSYSERQLYEAALDRLSREIAVVQHITETEAVKEVEANLA 366 >gi|90422072|ref|YP_530442.1| CarD family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104086|gb|ABD86123.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisB18] Length = 365 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/170 (64%), Positives = 138/170 (81%), Gaps = 3/170 (1%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 174 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFMKDKMTLRVPTAKVANVGMR 233 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R+DSQPE Sbjct: 234 KLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSDSQPE 293 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS---KSSKTE 177 +SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + +KTE Sbjct: 294 QSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKTE 343 >gi|182680042|ref|YP_001834188.1| CarD family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635925|gb|ACB96699.1| transcriptional regulator, CarD family [Beijerinckia indica subsp. indica ATCC 9039] Length = 368 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 107/162 (66%), Positives = 135/162 (83%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +A R GF+ E IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP KA+ + Sbjct: 178 NAQRHGFKPLEFIVYPAHGVGQIIAIEEQEVAGFKLELFVISFVKDKMILKVPTPKAVSV 237 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 MRKL+EA +++AL+ + G+AR+KRTMWSRRAQEY+AKINSGDLIA+AEVVRDL+R+D+ Sbjct: 238 RMRKLAEADVIDKALETLTGRARIKRTMWSRRAQEYEAKINSGDLIAVAEVVRDLYRSDA 297 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 QPE+SYSERQLYE+AL+R+ RE+AAV ++E E++ LIE L Sbjct: 298 QPEQSYSERQLYEAALDRVARELAAVQKLTETESLKLIEAQL 339 >gi|254473139|ref|ZP_05086537.1| transcription factor CarD [Pseudovibrio sp. JE062] gi|211957860|gb|EEA93062.1| transcription factor CarD [Pseudovibrio sp. JE062] Length = 193 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 110/171 (64%), Positives = 137/171 (80%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGEHI+YP+HGVG IT I+EQ VAG LE VI F++DKM L+VP Sbjct: 1 MATPAKKTAQRQGFKTGEHIIYPSHGVGLITAIEEQTVAGYSLELLVIEFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKLS+A V+++L+ + GK RVKRTMWSRRAQEY+AKINSGDL++ AEVVR Sbjct: 61 VAKIASVGMRKLSDASTVKKSLETIAGKPRVKRTMWSRRAQEYEAKINSGDLVSTAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 DL+R+D+QPE+SYSERQLYE+AL+RM REIAAV ++ EAI IE LS+ Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMAREIAAVQKQTDTEAIRQIEGVLST 171 >gi|217977551|ref|YP_002361698.1| transcriptional regulator, CarD family [Methylocella silvestris BL2] gi|217502927|gb|ACK50336.1| transcriptional regulator, CarD family [Methylocella silvestris BL2] Length = 456 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 107/157 (68%), Positives = 127/157 (80%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF+ E+IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP K +GMRKL Sbjct: 274 GFKPNEYIVYPAHGVGQIVAIEEQEVAGFKLELFVISFVKDKMILKVPTPKVTSVGMRKL 333 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +EA V R+L + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+DSQPE+S Sbjct: 334 AEADVVRRSLDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSDSQPEQS 393 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 YSERQLYE+AL+RM RE+ V ++E EA+ IE L Sbjct: 394 YSERQLYEAALDRMAREVVIVEKLTETEALKAIEAQL 430 >gi|8131942|gb|AAF73146.1|AF149031_1 unknown [Sinorhizobium meliloti] Length = 162 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 118/163 (72%), Positives = 138/163 (84%), Gaps = 3/163 (1%) Query: 28 GTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRG 87 G I I+EQEVAGMKLE FVI F+KDKM LKVPV KA+ IGMRKLSE FV+RALK+V+G Sbjct: 1 GQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDRALKVVQG 60 Query: 88 KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMV 147 KARVKRTMWSRRAQEYDAKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM Sbjct: 61 KARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMA 120 Query: 148 REIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN--QDKAA 188 REIAAVN +SE EA+ L+E NL +K K K+ E+ QD+AA Sbjct: 121 REIAAVNRMSETEAVRLVEANL-NKGPKRGKAIEEDDAQDEAA 162 >gi|92116128|ref|YP_575857.1| CarD family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799022|gb|ABE61397.1| transcriptional regulator, CarD family [Nitrobacter hamburgensis X14] Length = 259 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 108/171 (63%), Positives = 137/171 (80%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGFRT E +VYPAHGVG I I+EQE+AG +LE FVI F KDKM L+VP K ++GMR Sbjct: 69 RQGFRTNEFVVYPAHGVGQILAIEEQEIAGARLELFVINFMKDKMTLRVPTAKIANVGMR 128 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 129 KLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 188 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 +SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ + K+ S Sbjct: 189 QSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLAKSPRRGAKAES 239 >gi|319899401|ref|YP_004159498.1| transcriptional factor [Bartonella clarridgeiae 73] gi|319403369|emb|CBI76928.1| transcriptional factor [Bartonella clarridgeiae 73] Length = 191 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/166 (67%), Positives = 133/166 (80%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP+ KA+ IGMRKLS Sbjct: 14 FLTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVPIAKALSIGMRKLS 73 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEV+RDL R+D QPE+SY Sbjct: 74 TVDSVNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVIRDLFRSDLQPEQSY 133 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 SERQLY AL+RM REIA VNS++E EAINLIE +L+ KS KS Sbjct: 134 SERQLYAIALDRMAREIAVVNSLTETEAINLIEKHLTKKSKSEFKS 179 >gi|27375267|ref|NP_766796.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348403|dbj|BAC45421.1| bll0156 [Bradyrhizobium japonicum USDA 110] Length = 328 Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 105/160 (65%), Positives = 131/160 (81%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 132 RQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMR 191 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 192 KLSEPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 251 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ Sbjct: 252 QSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIEAQLA 291 >gi|85713774|ref|ZP_01044764.1| transcription factor CarD [Nitrobacter sp. Nb-311A] gi|85699678|gb|EAQ37545.1| transcription factor CarD [Nitrobacter sp. Nb-311A] Length = 220 Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 108/169 (63%), Positives = 136/169 (80%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 28 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKIANVGMR 87 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 88 KLSEPDLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 147 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 +SYSERQLYE+AL+R+ REIA V ++E EAI IE L+ + K+ Sbjct: 148 QSYSERQLYEAALDRLSREIAVVQHVTETEAIKEIEGQLAKSPRRGAKA 196 >gi|91974760|ref|YP_567419.1| transcription factor CarD [Rhodopseudomonas palustris BisB5] gi|91681216|gb|ABE37518.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisB5] Length = 432 Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 132/160 (82%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ GE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 241 RQGFKAGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMR 300 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R++SQPE Sbjct: 301 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRSESQPE 360 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ Sbjct: 361 QSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLA 400 >gi|121602125|ref|YP_988461.1| CarD family transcriptional regulator [Bartonella bacilliformis KC583] gi|120614302|gb|ABM44903.1| transcriptional regulator, CarD family [Bartonella bacilliformis KC583] Length = 192 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/190 (61%), Positives = 143/190 (75%), Gaps = 4/190 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ + GF T E+IVYP HGVG I I+EQEVAG KLE FVI F KDKM +KVP Sbjct: 1 MASQQKKTS--HGFSTSEYIVYPTHGVGQIMVIEEQEVAGHKLELFVIHFAKDKMDVKVP 58 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ GMRKLSE VE+ALK+++GKAR+KR MWSRRAQEYD KINSG+ + IAEVVR Sbjct: 59 IAKALSTGMRKLSEPASVEKALKILQGKARIKRIMWSRRAQEYDTKINSGNFMFIAEVVR 118 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE--VNLSSKSSKTEK 178 DL R+D QPE+SYSERQLY +AL+RM REI+ +N++SE EA+NLIE +N KSS K Sbjct: 119 DLFRSDLQPEQSYSERQLYAAALDRMSREISVINNLSETEAVNLIEKHLNEGQKSSFEAK 178 Query: 179 STSENQDKAA 188 ++D A Sbjct: 179 IDEADEDSKA 188 >gi|86747677|ref|YP_484173.1| CarD family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570705|gb|ABD05262.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris HaA2] Length = 429 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 131/160 (81%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 236 RQGFKASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMR 295 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R+DSQPE Sbjct: 296 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPE 355 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ Sbjct: 356 QSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLA 395 >gi|296447999|ref|ZP_06889905.1| transcriptional regulator, CarD family [Methylosinus trichosporium OB3b] gi|296254509|gb|EFH01630.1| transcriptional regulator, CarD family [Methylosinus trichosporium OB3b] Length = 546 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 131/167 (78%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF+T E IVYPAHGVG I I+ QEVAG LE FV+ F KDKM LKVPV K +GMRKL Sbjct: 359 GFKTNEFIVYPAHGVGQIMAIETQEVAGFSLELFVVHFVKDKMTLKVPVSKVAAVGMRKL 418 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E VE+AL + G+ARVKRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QPE+S Sbjct: 419 AEPDVVEKALGTLTGRARVKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQPEQS 478 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 YSERQLYE+AL+RM RE+AAV + + E++ LIE L+ + +KS Sbjct: 479 YSERQLYEAALDRMAREVAAVRKLIDSESLKLIESFLAKSPRRGQKS 525 >gi|148258713|ref|YP_001243298.1| CarD family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410886|gb|ABQ39392.1| transcriptional regulator, CarD family [Bradyrhizobium sp. BTAi1] Length = 278 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/177 (61%), Positives = 140/177 (79%), Gaps = 3/177 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 ++K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 72 EKKLPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 131 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+ Sbjct: 132 VANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 191 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS---KSSKTE 177 R++SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + +KTE Sbjct: 192 RSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTE 248 >gi|146337765|ref|YP_001202813.1| CarD family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190571|emb|CAL74573.1| putative transcriptional regulatory protein, CarD family [Bradyrhizobium sp. ORS278] Length = 204 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/170 (63%), Positives = 137/170 (80%), Gaps = 3/170 (1%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 5 RQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMR 64 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 65 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 124 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS---KSSKTE 177 +SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + +KTE Sbjct: 125 QSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTE 174 >gi|316931531|ref|YP_004106513.1| CarD family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599245|gb|ADU41780.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris DX-1] Length = 264 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 132/160 (82%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 70 RQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMR 129 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 130 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 189 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ Sbjct: 190 QSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLA 229 >gi|192288919|ref|YP_001989524.1| CarD family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282668|gb|ACE99048.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris TIE-1] Length = 278 Score = 226 bits (577), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 132/160 (82%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 86 RQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMR 145 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 146 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 205 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ Sbjct: 206 QSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLA 245 >gi|319406281|emb|CBI79918.1| transcriptional factor [Bartonella sp. AR 15-3] Length = 191 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/160 (67%), Positives = 129/160 (80%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP+ KA+ GMRKLS Sbjct: 14 FSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVPIAKALSTGMRKLS 73 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEVVRDL R+D QPE+SY Sbjct: 74 TVDSMNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVVRDLFRSDLQPEQSY 133 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 SERQLY AL+RM REIA +NS++E EAINLIE L+ KS Sbjct: 134 SERQLYTIALDRMAREIAVINSLTEMEAINLIEKYLTKKS 173 >gi|39933565|ref|NP_945841.1| CarD-like transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647411|emb|CAE25932.1| possible CarD-like transcriptional regulator [Rhodopseudomonas palustris CGA009] Length = 220 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 132/160 (82%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++GMR Sbjct: 28 RQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMR 87 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++SQPE Sbjct: 88 KLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPE 147 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ Sbjct: 148 QSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLA 187 >gi|154252146|ref|YP_001412970.1| CarD family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156096|gb|ABS63313.1| transcriptional regulator, CarD family [Parvibaculum lavamentivorans DS-1] Length = 350 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/174 (62%), Positives = 138/174 (79%), Gaps = 1/174 (0%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R F+ E +VYPAHGVG I +I+EQEVAG KLE FVI FDK+KM L+VP KA +GMR Sbjct: 173 RANFKAKEFVVYPAHGVGQILDIEEQEVAGHKLELFVINFDKEKMTLRVPTNKAGAVGMR 232 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+A V+ A++ +RG+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDL+R++ QPE Sbjct: 233 KLSDAGVVDSAIETLRGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLYRSERQPE 292 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 +SYSERQLYE+AL+RM RE+AAV I E AI +E L ++KT+K+ ++ Sbjct: 293 QSYSERQLYEAALDRMAREVAAVERIGEDAAIERVEQALQG-AAKTDKAPKSDE 345 >gi|323138996|ref|ZP_08074056.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC 49242] gi|322395750|gb|EFX98291.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC 49242] Length = 485 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 101/156 (64%), Positives = 127/156 (81%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + GF+ E IVYPAHGVG I ++ QEVAG LE FV++F KDKM LKVP K ++GMR Sbjct: 300 KHGFKQSEFIVYPAHGVGQIIGVEIQEVAGFSLELFVVSFIKDKMILKVPTSKVANVGMR 359 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KL+E + V++AL + G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QPE Sbjct: 360 KLAEGNVVDKALATLSGRARIKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQPE 419 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +SYSERQLYE+AL+RM REIAAV + + EA+ LIE Sbjct: 420 QSYSERQLYEAALDRMAREIAAVRKLIDSEALKLIE 455 >gi|319407756|emb|CBI81403.1| transcriptional factor [Bartonella sp. 1-1C] Length = 191 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 109/162 (67%), Positives = 129/162 (79%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVPV KA+ GMRK Sbjct: 12 EDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVPVAKALSTGMRK 71 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 LS V RA K+++GKAR+KRTMWSRRAQEYD KINSGD+I+IAEVVRDL R+ QPE+ Sbjct: 72 LSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGDIISIAEVVRDLFRSALQPEQ 131 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS Sbjct: 132 SYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKS 173 >gi|300024663|ref|YP_003757274.1| CarD family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526484|gb|ADJ24953.1| transcriptional regulator, CarD family [Hyphomicrobium denitrificans ATCC 51888] Length = 333 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/175 (59%), Positives = 136/175 (77%), Gaps = 1/175 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 + Q+K R GF+ E +VYPAHGVG I I+EQE+AGM LE FVI FDK+K+ L+VP Sbjct: 146 LAVQKKPVNQRHGFKANEFVVYPAHGVGRIVGIEEQEIAGMSLELFVITFDKEKLTLRVP 205 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 GK +GMRKL++ V++A++ ++G+AR+KRTMWSRRAQEY AKINSGDLI+IAEVVR Sbjct: 206 TGKLASVGMRKLADEGLVKKAMETLKGRARIKRTMWSRRAQEYVAKINSGDLISIAEVVR 265 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 DL+R+++QPE+SYSERQLYE AL+RM RE+AAV + E A+ I + SKS+K Sbjct: 266 DLYRSEAQPEQSYSERQLYEDALDRMARELAAVEKLDERGAVQRI-TEILSKSAK 319 >gi|319404796|emb|CBI78397.1| transcriptional factor [Bartonella rochalimae ATCC BAA-1498] Length = 191 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/162 (66%), Positives = 129/162 (79%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVPV KA+ GMRK Sbjct: 12 EDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVPVAKALSTGMRK 71 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 LS V RA K+++GKAR+KRTMWSRRAQEYD KINSG++I+IAEVVRDL R+ QPE+ Sbjct: 72 LSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGNIISIAEVVRDLFRSALQPEQ 131 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS Sbjct: 132 SYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKS 173 >gi|312113407|ref|YP_004011003.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii ATCC 17100] gi|311218536|gb|ADP69904.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii ATCC 17100] Length = 187 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/174 (61%), Positives = 134/174 (77%), Gaps = 1/174 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF+ E++VYP HGVG I I+EQE+AG KLE FVI F+KDKM L+VP K GMRKL Sbjct: 11 GFKANEYVVYPTHGVGRIVAIEEQEIAGCKLELFVINFEKDKMTLRVPTSKTQSAGMRKL 70 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S+A + RA++ +RG+ARVKRTMWSRRAQEY+AKINSGDLI IAEVVRDL+R+D+QPE+S Sbjct: 71 SDAAVLARAMETLRGRARVKRTMWSRRAQEYEAKINSGDLITIAEVVRDLYRSDAQPEQS 130 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 YSERQLYESAL+RM REIAA + E AI + L +K+ + K E+++K Sbjct: 131 YSERQLYESALDRMAREIAAAQDVDESIAIQKVAEAL-TKAGRLRKQEVEDEEK 183 >gi|302384121|ref|YP_003819944.1| CarD family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302194749|gb|ADL02321.1| transcriptional regulator, CarD family [Brevundimonas subvibrioides ATCC 15264] Length = 186 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/175 (56%), Positives = 130/175 (74%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP KA G+R L+ Sbjct: 9 FKVGDAVVYPAHGVGKVAAVEVQEVAGMSLEVYVVTFDHEKMTLRVPTKKAKTAGLRSLA 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVRDLHR DSQPE+SY Sbjct: 69 SEDVVTKALSTLKGRARIKRTMWSRRAQEYEAKINSGDLVCIAEVVRDLHRADSQPEQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 SERQLYESAL+RM RE+AA N I + A+ L+ +LS+K + + ++D A Sbjct: 129 SERQLYESALDRMAREVAAANRIDKDAAVQLLSKSLSAKKANAPVAEVADEDSEA 183 >gi|254418588|ref|ZP_05032312.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3] gi|196184765|gb|EDX79741.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3] Length = 176 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 97/159 (61%), Positives = 125/159 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP KA G+R L+ Sbjct: 9 FKVGDAVVYPAHGVGKVAAVETQEVAGMSLEVYVVTFDHEKMTLRVPTKKAATAGLRSLA 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR D+QPE+SY Sbjct: 69 ADDVVTKALTTLKGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRADTQPEQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SERQLYESAL+RM RE+AA N I + A+ L+ +LS+K Sbjct: 129 SERQLYESALDRMAREVAAANKIDKDAAVELLAKSLSAK 167 >gi|99080417|ref|YP_612571.1| CarD family transcriptional regulator [Ruegeria sp. TM1040] gi|99036697|gb|ABF63309.1| transcriptional regulator, CarD family [Ruegeria sp. TM1040] Length = 169 Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/161 (63%), Positives = 126/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KAIDIGMR LS Sbjct: 9 FRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 169 >gi|119384562|ref|YP_915618.1| CarD family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374329|gb|ABL69922.1| transcriptional regulator, CarD family [Paracoccus denitrificans PD1222] Length = 169 Score = 213 bits (543), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 127/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + +VYP HGVG I I+EQEVAG++LE FVI+F+KDKM L+VP +A +IGMR LS Sbjct: 9 FRPDDFVVYPTHGVGRIVSIEEQEVAGLRLEMFVISFEKDKMTLRVPTARATEIGMRGLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VERAL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D Q E+SY Sbjct: 69 TPDLVERALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRNDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL+R+ RE+AAV+ + E A +E L+++++ Sbjct: 129 SERQLYEAALDRLTREVAAVSGMDEAGAQKRVETVLTARAA 169 >gi|114799783|ref|YP_762092.1| CarD family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739957|gb|ABI78082.1| transcriptional regulator, CarD family [Hyphomonas neptunium ATCC 15444] Length = 174 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/158 (63%), Positives = 126/158 (79%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K +A F G+ +VYPAHGVG IT I+ Q VAGM+LE +V+AFD+DKM L+VP +A Sbjct: 3 KKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNRA 62 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 GMR L+ + V+ ALK + GKAR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR Sbjct: 63 EASGMRALAGSKLVDDALKTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHR 122 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAI 162 D QPE+SYSERQLYESAL+RM RE+AAV +I + +A+ Sbjct: 123 GDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAM 160 >gi|167648071|ref|YP_001685734.1| CarD family transcriptional regulator [Caulobacter sp. K31] gi|167350501|gb|ABZ73236.1| transcriptional regulator, CarD family [Caulobacter sp. K31] Length = 170 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 97/156 (62%), Positives = 124/156 (79%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYPAHGVG+I ++ QEVAGM LE ++I FD +KM L+VP KA G+R L+ Sbjct: 8 FSVGDHVVYPAHGVGSIQGVETQEVAGMSLEVYIITFDHEKMTLRVPTKKAKTAGLRPLA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E + V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+SY Sbjct: 68 EGNVVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SERQLYESAL+RM RE+AA+ I AI ++ +L Sbjct: 128 SERQLYESALDRMAREVAAIERIDREAAIGILTKSL 163 >gi|16124906|ref|NP_419470.1| hypothetical protein CC_0653 [Caulobacter crescentus CB15] gi|221233627|ref|YP_002516063.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000] gi|13421868|gb|AAK22638.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962799|gb|ACL94155.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000] Length = 185 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 99/156 (63%), Positives = 123/156 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYPAHGVG+I I+ QEVAGM LE +VI FD +KM L+VP KA G+R L+ Sbjct: 26 FSVGDHVVYPAHGVGSIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTKKAKTAGLRPLA 85 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+SY Sbjct: 86 EGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSY 145 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SERQLYESAL+RM RE+AA+ I AI ++ +L Sbjct: 146 SERQLYESALDRMAREVAAIERIDREAAIGILTKSL 181 >gi|83308694|emb|CAJ01604.1| putative transcriptional factor regulator [Methylocapsa acidiphila] Length = 175 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/150 (67%), Positives = 123/150 (82%) Query: 20 IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79 +VYPAHGVG I I+EQ VAG KLE FVI+F KDKM LKVP K +GMRKL+EA V+ Sbjct: 1 MVYPAHGVGQIIAIEEQVVAGFKLELFVISFIKDKMILKVPTPKVASVGMRKLAEAGVVK 60 Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139 +AL + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+D+QPE+SYSERQLY Sbjct: 61 KALDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSDAQPEQSYSERQLY 120 Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+AL+RM REI V ++E E++ +IE L Sbjct: 121 EAALDRMAREIVVVQKLTETESLKVIEGQL 150 >gi|259417460|ref|ZP_05741379.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B] gi|259346366|gb|EEW58180.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B] Length = 193 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 102/161 (63%), Positives = 126/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KA+DIGMR LS Sbjct: 33 FRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAVDIGMRSLS 92 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 93 SPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 152 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 153 SERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 193 >gi|310815308|ref|YP_003963272.1| transcriptional regulator, CarD family protein [Ketogulonicigenium vulgare Y25] gi|308754043|gb|ADO41972.1| transcriptional regulator, CarD family protein [Ketogulonicigenium vulgare Y25] Length = 169 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/145 (69%), Positives = 117/145 (80%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F ++IVYPAHGVG I I+EQEVAG KLE FVIAF+KDKM L+VP KAI+IGMR L+ Sbjct: 9 FHPNDYIVYPAHGVGQILSIEEQEVAGFKLELFVIAFEKDKMTLRVPTNKAIEIGMRALA 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V+ ALK ++GKA+VK+ MWSRRAQEYD KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 69 SSDVVDHALKTLKGKAKVKKAMWSRRAQEYDEKINSGDLIAIAEVVRDLHRADDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SERQLYE AL R+ RE+AAVN E Sbjct: 129 SERQLYERALERLTRELAAVNGKDE 153 >gi|295691061|ref|YP_003594754.1| CarD family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432964|gb|ADG12136.1| transcriptional regulator, CarD family [Caulobacter segnis ATCC 21756] Length = 167 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/156 (63%), Positives = 122/156 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYPAHGVG I I+ QEVAGM LE +VI FD +KM L+VP KA G+R L+ Sbjct: 8 FSVGDHVVYPAHGVGNIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTKKAKTAGLRPLA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+SY Sbjct: 68 EGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SERQLYESAL+RM RE+AA+ I AI ++ +L Sbjct: 128 SERQLYESALDRMAREVAAIERIDREAAIGILTKSL 163 >gi|197104173|ref|YP_002129550.1| transcriptional regulator,CarD family [Phenylobacterium zucineum HLK1] gi|196477593|gb|ACG77121.1| transcriptional regulator,CarD family [Phenylobacterium zucineum HLK1] Length = 171 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 97/156 (62%), Positives = 123/156 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYPAHGVG + I+ QEVAG+KLE +VI FD +KM L+VP KA G+R L+ Sbjct: 8 FSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKTAGLRPLA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+SY Sbjct: 68 DTGLVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SERQLYESAL+RM RE+AA+ I AI ++ +L Sbjct: 128 SERQLYESALDRMAREVAAIERIDREAAIAMLNKSL 163 >gi|159043338|ref|YP_001532132.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911098|gb|ABV92531.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 170 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/161 (62%), Positives = 124/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 10 FRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVPTNKATEVGMRSLS 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 70 SPDIVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRNDDQREQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ REIAAV+ E A ++ L S+++ Sbjct: 130 SERQLYEAALERLTREIAAVSGDDEGNAQKRVDDVLVSRAA 170 >gi|254463989|ref|ZP_05077400.1| transcriptional regulator, CarD family [Rhodobacterales bacterium Y4I] gi|206684897|gb|EDZ45379.1| transcriptional regulator, CarD family [Rhodobacterales bacterium Y4I] Length = 169 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 126/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA ++GMR LS Sbjct: 9 FRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVIEQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGNDEIAAAKQVDEVLTSRAA 169 >gi|77462983|ref|YP_352487.1| CarD family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461857|ref|YP_001042971.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146277597|ref|YP_001167756.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|221638839|ref|YP_002525101.1| CarD family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332557859|ref|ZP_08412181.1| Transcriptional regulator, CarD family protein [Rhodobacter sphaeroides WS8N] gi|77387401|gb|ABA78586.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides 2.4.1] gi|126103521|gb|ABN76199.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides ATCC 17029] gi|145555838|gb|ABP70451.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides ATCC 17025] gi|221159620|gb|ACM00600.1| Transcriptional regulator, CarD family [Rhodobacter sphaeroides KD131] gi|332275571|gb|EGJ20886.1| Transcriptional regulator, CarD family protein [Rhodobacter sphaeroides WS8N] Length = 169 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 126/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 9 FRPNEFVVYPAHGVGRIISIEEQEIAGIRLELFVISFEKDKMTLRVPTHKATEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHRTD Q E+SY Sbjct: 69 TPDVVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ + E A ++ L S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGVDEAGAQKAVDAVLVSRAA 169 >gi|260434064|ref|ZP_05788035.1| transcriptional regulator, CarD family [Silicibacter lacuscaerulensis ITI-1157] gi|260417892|gb|EEX11151.1| transcriptional regulator, CarD family [Silicibacter lacuscaerulensis ITI-1157] Length = 169 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 127/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + +VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP KA + G+R LS Sbjct: 9 FRPNDFVVYPAHGVGKIISIEEQEVAGFKLELFVISFEKDKMTLRVPTNKATESGLRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++A+K +RGKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 TPDVIDQAMKTLRGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL+R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALDRLTREVAAVSGADEIAAAKQVDEVLTSRAA 169 >gi|126738718|ref|ZP_01754414.1| transcriptional regulator, CarD family protein [Roseobacter sp. SK209-2-6] gi|126719899|gb|EBA16606.1| transcriptional regulator, CarD family protein [Roseobacter sp. SK209-2-6] Length = 169 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA ++GMR LS Sbjct: 9 FRPNDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGADEILAAKQVDEVLTSRAA 169 >gi|84687443|ref|ZP_01015321.1| transcriptional regulator, CarD family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664601|gb|EAQ11087.1| transcriptional regulator, CarD family protein [Rhodobacterales bacterium HTCC2654] Length = 169 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 9 FRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVPTNKATEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHR D Q E+SY Sbjct: 69 SPDVVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRNDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGGDEAAAQEKVDGVLTSRAA 169 >gi|260576851|ref|ZP_05844834.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2] gi|259020888|gb|EEW24201.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2] Length = 169 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPNEFVVYPAHGVGKIISIEEQEIAGLHLELFVISFEKDKMTLRVPTHKATEIGMRGLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR+D Q E+SY Sbjct: 69 SPDIVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLLSIAEVVRDLHRSDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ + E A + L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGVDEAGAQKTVGTVLTSRAA 169 >gi|56696304|ref|YP_166661.1| CarD family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678041|gb|AAV94707.1| transcriptional regulator, CarD family [Ruegeria pomeroyi DSS-3] Length = 169 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 126/161 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP KA + G+R LS Sbjct: 9 FRPNDYVVYPAHGVGQILSIEEQEVAGFKLELFVISFEKDKMTLRVPTNKATESGLRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGADEMAAAKQVDEVLTSRAA 169 >gi|329890831|ref|ZP_08269174.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568] gi|328846132|gb|EGF95696.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568] Length = 181 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 97/159 (61%), Positives = 125/159 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYPAHGVG + I+ QEVAGM LE +V+ F+ +KM L+VP KA G+R L+ Sbjct: 9 FKVGDAVVYPAHGVGKVAAIETQEVAGMALEVYVVTFEHEKMTLRVPTKKAKTAGLRTLA 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+SY Sbjct: 69 ADDTVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAETQPEQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SERQLYESAL+RM RE+AA N I + A+ L+ +LS+K Sbjct: 129 SERQLYESALDRMAREVAAANKIDKDAAMALLGKSLSAK 167 >gi|254476379|ref|ZP_05089765.1| transcriptional regulator, CarD family [Ruegeria sp. R11] gi|214030622|gb|EEB71457.1| transcriptional regulator, CarD family [Ruegeria sp. R11] Length = 169 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPDDYVVYPAHGVGQIISIEEQEVAGFKLELFVITFEKDKMTLRVPTHKATEIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169 >gi|86137857|ref|ZP_01056433.1| transcriptional regulator, CarD family protein [Roseobacter sp. MED193] gi|85825449|gb|EAQ45648.1| transcriptional regulator, CarD family protein [Roseobacter sp. MED193] Length = 170 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 96/141 (68%), Positives = 115/141 (81%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR E++VYPAHGVG I ++EQEVAG LE FVI F+KDKM L+VP KAI++GMR L Sbjct: 8 AFRPDEYVVYPAHGVGQIISVEEQEVAGFALELFVITFEKDKMTLRVPTNKAIEVGMRSL 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+S Sbjct: 68 SSPDVIAQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQS 127 Query: 133 YSERQLYESALNRMVREIAAV 153 YSERQLYE+AL R+ RE+AAV Sbjct: 128 YSERQLYEAALERLTREVAAV 148 >gi|254461053|ref|ZP_05074469.1| transcriptional regulator, CarD family [Rhodobacterales bacterium HTCC2083] gi|206677642|gb|EDZ42129.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium HTCC2083] Length = 172 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 103/159 (64%), Positives = 120/159 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG + ++EQEVA +KLE +VIAF+KDKM L+VP KAIDIGMR LS Sbjct: 9 FRVNEFVVYPAHGVGKVVSVEEQEVADVKLELYVIAFEKDKMTLRVPTHKAIDIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SY Sbjct: 69 TGDEVAHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SERQLYE+AL R+ REI AV E A I L S+ Sbjct: 129 SERQLYEAALERLTREIGAVQGGDEDAAARQITDVLMSR 167 >gi|114764920|ref|ZP_01444093.1| transcriptional regulator, CarD family protein [Pelagibaca bermudensis HTCC2601] gi|114542632|gb|EAU45656.1| transcriptional regulator, CarD family protein [Roseovarius sp. HTCC2601] Length = 169 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 98/145 (67%), Positives = 117/145 (80%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAGM LE FVI+F+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPNDYVVYPAHGVGQIMSIEEQEVAGMTLELFVISFEKDKMTLRVPTHKATEIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 69 SPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SERQLYE+AL R+ RE+AAV+ E Sbjct: 129 SERQLYEAALERLTREVAAVSGGDE 153 >gi|163738513|ref|ZP_02145928.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis BS107] gi|163743575|ref|ZP_02150952.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis 2.10] gi|161383160|gb|EDQ07552.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis 2.10] gi|161388434|gb|EDQ12788.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis BS107] Length = 170 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 124/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169 >gi|315498116|ref|YP_004086920.1| transcriptional regulator, card family [Asticcacaulis excentricus CB 48] gi|315416128|gb|ADU12769.1| transcriptional regulator, CarD family [Asticcacaulis excentricus CB 48] Length = 169 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 124/156 (79%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+TG+ +VYPAHGVGT+ ++ QEVAG +LE +V+ FD +KM L+VP KA G+R L+ Sbjct: 10 FKTGDKVVYPAHGVGTVAAVESQEVAGYQLEVYVVTFDHEKMTLRVPTKKAKTAGLRHLA 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 A + +AL ++G+ARVKRTMWSRRAQEY+AKINSGDL++IAEVVRDLHR ++QPE+SY Sbjct: 70 PAAVMSQALVTLKGRARVKRTMWSRRAQEYEAKINSGDLVSIAEVVRDLHRAENQPEQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SERQLYESAL+RM RE+AA+ I A+ L+ +L Sbjct: 130 SERQLYESALDRMAREVAAIEKIDRDAAVALLNKSL 165 >gi|83955682|ref|ZP_00964262.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. NAS-14.1] gi|83839976|gb|EAP79152.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. NAS-14.1] Length = 171 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 97/140 (69%), Positives = 114/140 (81%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPNEFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVPTHKATEIGMRALS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAV 153 SERQLYE+AL R+ RE+AAV Sbjct: 129 SERQLYEAALERLTREVAAV 148 >gi|294678311|ref|YP_003578926.1| CarD family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477131|gb|ADE86519.1| transcriptional regulator, CarD family [Rhodobacter capsulatus SB 1003] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP KA+DIGMR LS Sbjct: 9 FRPDDFVVYPAHGVGKIISIEEQEIAGLRLELFVISFEKDKMTLRVPTHKAVDIGMRGLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL+ ++GKA+VKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D Q E+SY Sbjct: 69 SPDVVTKALETLKGKAKVKRAMWSRRAQEYEQKINSGDLLSIAEVVRDLHRADDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L +++ Sbjct: 129 SERQLYEAALERLTREVAAVSGTDEAGAAKKVDEVLVGRAA 169 >gi|163746984|ref|ZP_02154341.1| transcriptional regulator, CarD family, putative [Oceanibulbus indolifex HEL-45] gi|161380098|gb|EDQ04510.1| transcriptional regulator, CarD family, putative [Oceanibulbus indolifex HEL-45] Length = 170 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/158 (64%), Positives = 121/158 (76%), Gaps = 5/158 (3%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQIVSIEEQEVAGIALELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSTPDVINHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDE 153 >gi|254293138|ref|YP_003059161.1| CarD family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041669|gb|ACT58464.1| transcriptional regulator, CarD family [Hirschia baltica ATCC 49814] Length = 171 Score = 207 bits (527), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/161 (59%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F +HIVYPAHGVG +T ++ QEVA MKLE +V+AF++DK+ L+VP KA GMR L+ Sbjct: 11 FEVEQHIVYPAHGVGRVTAVEVQEVADMKLEVYVVAFEQDKLILRVPTAKAKSSGMRSLA 70 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K + G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR D QP++SY Sbjct: 71 STKVVGDAIKTLGGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRADDQPDQSY 130 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYESAL+RM RE+A V +I EA+ + +L+ +++ Sbjct: 131 SERQLYESALDRMARELAVVENIEHTEAVARLSQSLAQRAA 171 >gi|254486669|ref|ZP_05099874.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101] gi|214043538|gb|EEB84176.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101] Length = 171 Score = 207 bits (527), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/140 (68%), Positives = 114/140 (81%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG I ++EQE+AG+ LE FVIAF+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPNEFVVYPAHGVGQIVSVEEQEIAGISLELFVIAFEKDKMTLRVPTHKATEIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SY Sbjct: 69 SPDTITHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAV 153 SERQLYE+AL R+ RE+AAV Sbjct: 129 SERQLYEAALERLTREVAAV 148 >gi|126727502|ref|ZP_01743336.1| putative CarD-like transcriptional regulator [Rhodobacterales bacterium HTCC2150] gi|126703282|gb|EBA02381.1| putative CarD-like transcriptional regulator [Rhodobacterales bacterium HTCC2150] Length = 172 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 123/161 (76%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR E +VYPAHGVG I I++QE+AG+++E FV+AF+KDKM L+VP KA+ +GMR L Sbjct: 8 AFRPNEFVVYPAHGVGQIVRIEDQEIAGIEMELFVVAFEKDKMTLRVPTEKALHVGMRSL 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S V RA+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+S Sbjct: 68 SSPETVTRAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDEQREQS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 YSERQLYE+AL R+ RE+AAV E A I+ L S++ Sbjct: 128 YSERQLYEAALERLTREVAAVGGTDEVVAGQQIDGVLMSRA 168 >gi|255262370|ref|ZP_05341712.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62] gi|255104705|gb|EET47379.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62] Length = 171 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/174 (59%), Positives = 128/174 (73%), Gaps = 5/174 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M+ ++KRD F + +VYPAHGVG + I+EQEVAG +LE FVIAF+KDKM L+VP Sbjct: 1 MSKKKKRD-----FEPNDFVVYPAHGVGKVVSIEEQEVAGFELELFVIAFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KAI++GMR LS V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKAIEVGMRSLSTPDVVNHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 DLHR D Q E+SYSERQLYE+AL R+ REIAA S E A I L S+++ Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREIAATGSGDEAIAAQEITDVLQSRAA 169 >gi|110679120|ref|YP_682127.1| CarD family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109455236|gb|ABG31441.1| transcriptional regulator, CarD family, putative [Roseobacter denitrificans OCh 114] Length = 170 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 5/158 (3%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDE 153 >gi|260426540|ref|ZP_05780519.1| transcriptional regulator, CarD family [Citreicella sp. SE45] gi|260421032|gb|EEX14283.1| transcriptional regulator, CarD family [Citreicella sp. SE45] Length = 170 Score = 207 bits (526), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 97/145 (66%), Positives = 118/145 (81%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQE+AG+KLE FVI+F+KDKM L+VP KA +IGMR LS Sbjct: 10 FRPNDYVVYPAHGVGQIVLIEEQEIAGIKLELFVISFEKDKMTLRVPTHKASEIGMRSLS 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 70 SPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SERQLYE+AL R+ RE+AAV+ E Sbjct: 130 SERQLYEAALERLTREVAAVSGGDE 154 >gi|163736061|ref|ZP_02143484.1| transcriptional regulator, CarD family, putative [Roseobacter litoralis Och 149] gi|161390657|gb|EDQ15003.1| transcriptional regulator, CarD family, putative [Roseobacter litoralis Och 149] Length = 170 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 5/158 (3%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQILSIEEQEVAGISLELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDE 153 >gi|84500895|ref|ZP_00999130.1| transcriptional regulator, CarD family protein [Oceanicola batsensis HTCC2597] gi|84390962|gb|EAQ03380.1| transcriptional regulator, CarD family protein [Oceanicola batsensis HTCC2597] Length = 169 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 95/161 (59%), Positives = 124/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+ QE+AG+ LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 9 FRPNDYVVYPAHGVGQIVSIESQEIAGISLELFVISFEKDKMTLRVPTNKATEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDL+AIAEVVRDLHR D Q E+SY Sbjct: 69 TPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLVAIAEVVRDLHRNDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E +A ++ L S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGADEVDAARKVDEVLVSRAA 169 >gi|149202302|ref|ZP_01879275.1| transcriptional regulator, CarD family protein [Roseovarius sp. TM1035] gi|149144400|gb|EDM32431.1| transcriptional regulator, CarD family protein [Roseovarius sp. TM1035] Length = 169 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA +IGMR LS Sbjct: 9 FRPDDYVVYPAHGVGQIVSIEEQEIAGITLELFVISFEKDKMTLRVPTNKATEIGMRGLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR+D Q E+SY Sbjct: 69 SPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRSDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGGDEVLAARKVDEVLVSRAA 169 >gi|89055799|ref|YP_511250.1| CarD family transcriptional regulator [Jannaschia sp. CCS1] gi|88865348|gb|ABD56225.1| transcriptional regulator, CarD family [Jannaschia sp. CCS1] Length = 172 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 96/148 (64%), Positives = 116/148 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F +++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 10 FSPNDYVVYPAHGVGQIITIEEQEVAGLNLELFVISFEKDKMTLRVPTAKATEVGMRPLS 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V +AL ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHR D Q E+SY Sbjct: 70 DPTVVSKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRADDQREQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SERQLYE+AL R+ RE+A V I E A Sbjct: 130 SERQLYEAALERLTRELAVVKGIDEAGA 157 >gi|254511434|ref|ZP_05123501.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium KLH11] gi|221535145|gb|EEE38133.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium KLH11] Length = 170 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/161 (59%), Positives = 124/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQ+VAG LE FVI+F+KDKM L+VP K + G+R LS Sbjct: 9 FRPNDYVVYPAHGVGQIISIEEQDVAGFSLELFVISFEKDKMTLRVPTNKVTESGLRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q E+SY Sbjct: 69 SPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 129 SERQLYEAALERLTREVAAVSGADEISAAKQVDEVLTSRAA 169 >gi|126729325|ref|ZP_01745139.1| transcriptional regulator, CarD family protein [Sagittula stellata E-37] gi|126710315|gb|EBA09367.1| transcriptional regulator, CarD family protein [Sagittula stellata E-37] Length = 171 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 94/141 (66%), Positives = 114/141 (80%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 12 FRPNDYVVYPAHGVGQIVSIEEQEIAGISLELFVISFEKDKMTLRVPTHKASEVGMRSLS 71 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 72 SPDVVSEAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 131 Query: 134 SERQLYESALNRMVREIAAVN 154 SERQLYE+AL R+ RE+AAV Sbjct: 132 SERQLYEAALERLTREVAAVT 152 >gi|89069370|ref|ZP_01156729.1| transcriptional regulator, CarD family protein [Oceanicola granulosus HTCC2516] gi|89045137|gb|EAR51208.1| transcriptional regulator, CarD family protein [Oceanicola granulosus HTCC2516] Length = 171 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 122/161 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F +H+VYPAHGVG I I++QEVAG +LE FVI+F+KDKM L+VP KA ++GMR LS Sbjct: 9 FSPNDHVVYPAHGVGQIVSIEKQEVAGFELELFVISFEKDKMTLRVPTHKAEEVGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 69 SPDVVAHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ REIAAV E A I+ L S+++ Sbjct: 129 SERQLYEAALERLTREIAAVGGNDEVAAAKEIDDVLVSRAA 169 >gi|114570846|ref|YP_757526.1| CarD family transcriptional regulator [Maricaulis maris MCS10] gi|114341308|gb|ABI66588.1| transcriptional regulator, CarD family [Maricaulis maris MCS10] Length = 169 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 96/161 (59%), Positives = 122/161 (75%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + F+ G+ IVYPAHGVG +T +++ VAG +E +V+ F++DKM L+VP K GMR Sbjct: 6 KSFKKGDFIVYPAHGVGRVTGVEKDSVAGFDIEVYVVTFEQDKMTLRVPTAKTEASGMRP 65 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 LS V+ ALK ++GKA+VKRTMWSRRAQEY+AKINSGDLI IAEVVRDLHR + QPE+ Sbjct: 66 LSSDKIVKDALKTLKGKAKVKRTMWSRRAQEYEAKINSGDLIQIAEVVRDLHRAEDQPEQ 125 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SYSERQLYESAL+RMVRE+AAV I A ++ +L+ K Sbjct: 126 SYSERQLYESALDRMVRELAAVEEIEHEAAREMLSTSLAKK 166 >gi|83942849|ref|ZP_00955310.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. EE-36] gi|83846942|gb|EAP84818.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. EE-36] Length = 160 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/136 (69%), Positives = 112/136 (82%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP KA +IGMR LS Sbjct: 2 EFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVPTHKATEIGMRALSSPDV 61 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137 + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SYSERQ Sbjct: 62 ISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSERQ 121 Query: 138 LYESALNRMVREIAAV 153 LYE+AL R+ RE+AAV Sbjct: 122 LYEAALERLTREVAAV 137 >gi|329848406|ref|ZP_08263434.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19] gi|328843469|gb|EGF93038.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19] Length = 172 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/160 (58%), Positives = 122/160 (76%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R F G+ +VYPAHGVGT+ ++ QEVAG LE FV+ FD +KM L+VP KA G+R Sbjct: 10 RFDFSVGDKVVYPAHGVGTVAAVETQEVAGYALEVFVVTFDHEKMTLRVPTKKAKTAGLR 69 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L+ + +AL ++G+AR+KRTMWSRRAQEY+AKINSG L+++AEVVRDL+R+DSQPE Sbjct: 70 HLAAEAVMSQALVTLKGRARIKRTMWSRRAQEYEAKINSGCLVSLAEVVRDLYRSDSQPE 129 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +SYSERQLYESAL+RM RE+AA+ I A+ L+ NL+ Sbjct: 130 QSYSERQLYESALDRMAREVAAIEKIDRDAAVALLNKNLT 169 >gi|83859720|ref|ZP_00953240.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii HTCC2633] gi|83852079|gb|EAP89933.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii HTCC2633] Length = 172 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 90/161 (55%), Positives = 125/161 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ +++VYPAHGVG + ++++ VAG +E +V++F++DKM L+VP KA GMR L+ Sbjct: 12 FKKSDYVVYPAHGVGRVVGVEKESVAGFDIEVYVVSFEQDKMTLRVPTAKATAAGMRPLA 71 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ALK ++GK +VKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR + QPE SY Sbjct: 72 SDDVLKDALKTLKGKPKVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRQEDQPEPSY 131 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYESAL+RMVRE+AAV + +A+ ++ L+ K++ Sbjct: 132 SERQLYESALDRMVREVAAVEKVDREKALEMLTTTLTKKAA 172 >gi|114769349|ref|ZP_01446975.1| transcriptional regulator, CarD family protein [alpha proteobacterium HTCC2255] gi|114550266|gb|EAU53147.1| transcriptional regulator, CarD family protein [alpha proteobacterium HTCC2255] Length = 170 Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 93/161 (57%), Positives = 122/161 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + +VYPAHGVG I ++ QE+AG ++E FVIAF+KDKM L+VP KA +GMR L+ Sbjct: 10 FRLNDFVVYPAHGVGKIMTVETQEIAGTQMELFVIAFEKDKMTLRVPTAKATAVGMRNLA 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE+A+K ++G+ARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D + E+SY Sbjct: 70 SEELVEKAMKTLKGRARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRNDEEREQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A + L +++S Sbjct: 130 SERQLYEAALERLTREVAAVDGTDEGVAAEKVTDILVARAS 170 >gi|126733165|ref|ZP_01748912.1| transcriptional regulator, CarD family, putative [Roseobacter sp. CCS2] gi|126716031|gb|EBA12895.1| transcriptional regulator, CarD family, putative [Roseobacter sp. CCS2] Length = 168 Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 99/161 (61%), Positives = 119/161 (73%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F E +VYPAHGVG I I+ QEVAG +LE FVI+F+KDKM L+VP KA +GMR L+ Sbjct: 8 FSPNEFVVYPAHGVGKIVSIETQEVAGFELEMFVISFEKDKMTLRVPTDKATHVGMRALA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 68 TPDVVSHAMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQDDQREQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ REIAAV E A I+ L S+++ Sbjct: 128 SERQLYEAALERLTREIAAVAGNDENAAAAEIDSVLVSRAA 168 >gi|254449905|ref|ZP_05063342.1| transcriptional regulator, CarD family [Octadecabacter antarcticus 238] gi|198264311|gb|EDY88581.1| transcriptional regulator, CarD family [Octadecabacter antarcticus 238] Length = 170 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/160 (60%), Positives = 119/160 (74%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + + +VYPAHGVG I I+ QE+AG +LE FVIAF+KDKM L+VP KA D+GMR L+ Sbjct: 8 YSPNDFVVYPAHGVGKIVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAEDVGMRSLA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 68 STEVVADCMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 SERQLYE+AL R+ RE AAV + +E EA I L S++ Sbjct: 128 SERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSRA 167 >gi|254441381|ref|ZP_05054874.1| CarD-like transcriptional regulator family [Octadecabacter antarcticus 307] gi|198251459|gb|EDY75774.1| CarD-like transcriptional regulator family [Octadecabacter antarcticus 307] Length = 170 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 96/161 (59%), Positives = 119/161 (73%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + + +VYPAHGVG + I+ QE+AG +LE FVIAF+KDKM L+VP KA ++GMR L+ Sbjct: 8 YSPNDFVVYPAHGVGKVVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAEEVGMRSLA 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 68 STDVVADCMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQREQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE AAV + +E EA I L S+ S Sbjct: 128 SERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSRVS 168 >gi|84515406|ref|ZP_01002768.1| putative CarD-like transcriptional regulator [Loktanella vestfoldensis SKA53] gi|84510689|gb|EAQ07144.1| putative CarD-like transcriptional regulator [Loktanella vestfoldensis SKA53] Length = 225 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 94/140 (67%), Positives = 110/140 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPAHGVG I ++ QEVAG +LE FVIAF+KDKM L+VP KA D+GMR L+ Sbjct: 65 FSPDQFVVYPAHGVGKIVSVETQEVAGFELEMFVIAFEKDKMTLRVPTHKATDVGMRALA 124 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V ALK +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q E+SY Sbjct: 125 TPDVVNHALKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQDDQREQSY 184 Query: 134 SERQLYESALNRMVREIAAV 153 SERQLYE+AL R+ RE AAV Sbjct: 185 SERQLYEAALERLTREFAAV 204 >gi|87198150|ref|YP_495407.1| CarD family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133831|gb|ABD24573.1| transcriptional regulator, CarD family [Novosphingobium aromaticivorans DSM 12444] Length = 174 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 88/163 (53%), Positives = 122/163 (74%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + E++++E+AGMKL+ +V+ F+K++M L+VPV K IGMRKL Sbjct: 7 AFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEAIGMRKL 66 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S + AL ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+S Sbjct: 67 SSDKTLREALDTLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQS 126 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 YSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K Sbjct: 127 YSERQIFEAASSRLARELAAMEKTDEPAALKKILAILNEHAPK 169 >gi|94497220|ref|ZP_01303792.1| transcriptional regulator, CarD family protein [Sphingomonas sp. SKA58] gi|94423325|gb|EAT08354.1| transcriptional regulator, CarD family protein [Sphingomonas sp. SKA58] Length = 175 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 84/152 (55%), Positives = 120/152 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+SY Sbjct: 68 SNKTLEEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 SERQ++E+A +R+ RE+AA+ EP A+ I Sbjct: 128 SERQIFEAASSRLARELAAMEETDEPSALQKI 159 >gi|46201683|ref|ZP_00208209.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 85/143 (59%), Positives = 113/143 (79%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+RKLS Sbjct: 6 FTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRKLS 65 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++SY Sbjct: 66 SRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQSY 125 Query: 134 SERQLYESALNRMVREIAAVNSI 156 SERQ+YE+AL R+ E+AAV I Sbjct: 126 SERQIYEAALERLASELAAVERI 148 >gi|148556439|ref|YP_001264021.1| CarD family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501629|gb|ABQ69883.1| transcriptional regulator, CarD family [Sphingomonas wittichii RW1] Length = 172 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 118/148 (79%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E++ QE+AG KLE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FVVGDYVVYPKHGVGRVVELQSQEIAGAKLELYVLRFEKERMTLRVPTNKAEAVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + AL ++GK ++KRTMWSRRAQEY+AKINSGDL++I+EVVRDL R D QPE+SY Sbjct: 68 SSVTMGEALTTLKGKPKIKRTMWSRRAQEYEAKINSGDLVSISEVVRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SERQ++E+A +R+ RE+AA+ ++ EP A Sbjct: 128 SERQIFEAATSRLARELAAMEAVDEPTA 155 >gi|296284819|ref|ZP_06862817.1| transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 182 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/170 (51%), Positives = 126/170 (74%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K IGMRKL Sbjct: 12 AFDVGDYVVYPKHGVGRVVELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVEAIGMRKL 71 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+S Sbjct: 72 SSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRPDDQPEQS 131 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 YSERQ++E+A +R+ RE+AA+ EP A+ I L + + ++T E Sbjct: 132 YSERQIFEAASSRLARELAAMEKTDEPAALEKILSVLREHAPQYYENTEE 181 >gi|294012721|ref|YP_003546181.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676051|dbj|BAI97569.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 175 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 84/152 (55%), Positives = 120/152 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+SY Sbjct: 68 SNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 SERQ++E+A +R+ RE+AA+ EP A+ I Sbjct: 128 SERQIFEAASSRLARELAAMEETDEPSALKKI 159 >gi|307294532|ref|ZP_07574374.1| transcriptional regulator, CarD family [Sphingobium chlorophenolicum L-1] gi|306879006|gb|EFN10224.1| transcriptional regulator, CarD family [Sphingobium chlorophenolicum L-1] Length = 175 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 84/152 (55%), Positives = 120/152 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+SY Sbjct: 68 SNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 SERQ++E+A +R+ RE+AA+ EP A+ I Sbjct: 128 SERQIFEAASSRLARELAAMEETDEPSALKKI 159 >gi|332186920|ref|ZP_08388661.1| carD-like/TRCF domain protein [Sphingomonas sp. S17] gi|332012930|gb|EGI54994.1| carD-like/TRCF domain protein [Sphingomonas sp. S17] Length = 177 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 118/148 (79%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E+++QE+AGM+LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FDVGDYVVYPKHGVGRVIELQKQEIAGMQLELYVLRFEKERMTLRVPTNKAESVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEVVRDL R D QPE+SY Sbjct: 68 SDKTMREAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVVRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SERQ++E+A +R+ RE+AA+ + E A Sbjct: 128 SERQIFEAATSRLARELAAMEEVDEQRA 155 >gi|56551117|ref|YP_161956.1| CarD family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761475|ref|ZP_04759563.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753230|ref|YP_003226123.1| CarD family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542691|gb|AAV88845.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374382|gb|EER63879.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552593|gb|ACV75539.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 184 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 119/152 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E++ QE+AG +LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FVVGDYVVYPKHGVGRVVELQSQEIAGTRLELYVLRFEKERMTLRVPTNKAEAVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ A++ ++GK R+KRTMWSRRAQEY+ KINSGDL++IAEVVRDL R D QPE+SY Sbjct: 68 SSATLQEAIQTLKGKPRIKRTMWSRRAQEYETKINSGDLVSIAEVVRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 SERQ++E A +R+ RE+ A+ + E +A++ I Sbjct: 128 SERQIFEGAASRLARELGAMENTDEAQALDKI 159 >gi|144899571|emb|CAM76435.1| Transcription factor CarD-like [Magnetospirillum gryphiswaldense MSR-1] Length = 164 Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + I+ QE+ GMKL+ FVI F++D+M L+VPV KA G+RKLS Sbjct: 6 FAEGDYVVYPTHGVGQVMAIENQEIGGMKLQLFVITFERDRMTLRVPVAKATKSGLRKLS 65 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDL+R +QP++SY Sbjct: 66 SRKDMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRNANQPDQSY 125 Query: 134 SERQLYESALNRMVREIAAVNSI-SEPEAINLIEV 167 SERQ+YE+AL R+ E+AAV I +E A L E+ Sbjct: 126 SERQIYEAALERLAAELAAVEGIDAEAAAAKLCEL 160 >gi|83313417|ref|YP_423681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948258|dbj|BAE53122.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 167 Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 84/143 (58%), Positives = 112/143 (78%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+R LS Sbjct: 9 FTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRMLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++SY Sbjct: 69 SRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSI 156 SERQ+YE+AL R+ E+AAV I Sbjct: 129 SERQIYEAALERLASELAAVERI 151 >gi|306841480|ref|ZP_07474180.1| transcriptional regulator [Brucella sp. BO2] gi|306288444|gb|EFM59800.1| transcriptional regulator [Brucella sp. BO2] Length = 136 Score = 190 bits (483), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/131 (72%), Positives = 112/131 (85%), Gaps = 1/131 (0%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114 M LKVPV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+ Sbjct: 1 MRLKVPVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLIS 60 Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 I+EVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL +K Sbjct: 61 ISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNL-AKGP 119 Query: 175 KTEKSTSENQD 185 K K+ +E D Sbjct: 120 KRGKAEAELDD 130 >gi|304321707|ref|YP_003855350.1| transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300609|gb|ADM10208.1| transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 308 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/161 (55%), Positives = 118/161 (73%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F+ I+YPAHGVG I ++++Q + ++E FVI F+ +KM L+VPV KA GMR Sbjct: 142 QKFKVNTQIIYPAHGVGNIVDLEKQTIGDFEVELFVIDFEHEKMKLRVPVAKAAASGMRN 201 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 LS ++ AL+L+ G+ARVKRTMWSRRAQEY+AKINSGDL+++AEVVRDL R D QPE+ Sbjct: 202 LSTTEQIDDALELLEGRARVKRTMWSRRAQEYEAKINSGDLVSVAEVVRDLFRADDQPEQ 261 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SYSERQL+E A R RE+AAV S +AI+ I ++L K Sbjct: 262 SYSERQLFEQARERFGREVAAVRKKSLEKAIDEIHIHLDRK 302 >gi|85709786|ref|ZP_01040851.1| transcriptional regulator [Erythrobacter sp. NAP1] gi|85688496|gb|EAQ28500.1| transcriptional regulator [Erythrobacter sp. NAP1] Length = 178 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 117/153 (76%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K IGMRKL Sbjct: 7 AFTVGDYVVYPKHGVGRVIELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVESIGMRKL 66 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ A+ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D QPE+S Sbjct: 67 SSDKTLKEAMDTLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQS 126 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 YSERQ++E+A +R+ RE+AA+ EP A+ I Sbjct: 127 YSERQIFEAASSRLARELAAMEETDEPTALEKI 159 >gi|103485742|ref|YP_615303.1| CarD family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975819|gb|ABF51970.1| transcriptional regulator, CarD family [Sphingopyxis alaskensis RB2256] Length = 175 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 83/148 (56%), Positives = 115/148 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E+++ E+AGM+LE +V+ F+K+KM L+VP KA +GMRKLS Sbjct: 8 FEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEGVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL+++ K +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+SY Sbjct: 68 SDKTLKEALQVLTTKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SERQ++E+A +R+ RE+AA+ E A Sbjct: 128 SERQIFEAASSRLARELAAMEESDEKTA 155 >gi|149185279|ref|ZP_01863596.1| transcriptional regulator [Erythrobacter sp. SD-21] gi|148831390|gb|EDL49824.1| transcriptional regulator [Erythrobacter sp. SD-21] Length = 177 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 117/153 (76%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + E++ +E+AGM+L+ +V+ F+K++M L+VPV K IGMRKL Sbjct: 7 AFDVGDYVVYPKHGVGRVIELQSEEIAGMQLDLYVLRFEKERMTLRVPVNKVESIGMRKL 66 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D QPE+S Sbjct: 67 SSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQS 126 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 YSERQ++E+A +R+ RE+AA+ E A+ I Sbjct: 127 YSERQIFEAASSRLARELAAMEKTDEATALEKI 159 >gi|85375450|ref|YP_459512.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84788533|gb|ABC64715.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 178 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 116/153 (75%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VP K IGMRKL Sbjct: 7 AFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVESIGMRKL 66 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D QPE+S Sbjct: 67 SSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQS 126 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 YSERQ++E+A +R+ RE+AA+ E A+ I Sbjct: 127 YSERQIFEAASSRLARELAAMEKTDEATALEKI 159 >gi|83591419|ref|YP_425171.1| CarD family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574333|gb|ABC20884.1| transcriptional regulator, CarD family [Rhodospirillum rubrum ATCC 11170] Length = 165 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 116/158 (73%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + TG+ +VYP HGVG + +I++Q + G LE VI F++++M L++P+ K + G+R+LS Sbjct: 7 YETGDFVVYPTHGVGQVLDIEKQVIGGYDLELLVIGFERERMKLRIPMPKVRESGLRRLS 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E AL +RGKARVKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QPE+SY Sbjct: 67 TKKVMESALVTLRGKARVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNATQPEQSY 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 SERQ+YE AL R+ E+AA+ I A +E LS+ Sbjct: 127 SERQIYELALERLTCELAAIEDIDASTATQKVEKLLSA 164 >gi|148262071|ref|YP_001236198.1| CarD family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405583|ref|YP_004285665.1| CarD family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403752|gb|ABQ32279.1| transcriptional regulator, CarD family [Acidiphilium cryptum JF-5] gi|325052445|dbj|BAJ82783.1| CarD family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 266 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 82/150 (54%), Positives = 110/150 (73%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+H+VYP HGVG + I +E+AG KLE I FD+++M L+VPV KA G+RKLS Sbjct: 108 FKPGDHVVYPTHGVGKVERIAAEEIAGQKLELIHITFDENRMTLRVPVNKARTAGLRKLS 167 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L ++G+ARVKRTMWSRRAQEY+AKINSGD +AIAEVVRDLHR QP++S+ Sbjct: 168 SRKQFDEVLATLKGRARVKRTMWSRRAQEYEAKINSGDPMAIAEVVRDLHRNAGQPDQSF 227 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN 163 SERQ++E AL+R+ E A+ + + AI+ Sbjct: 228 SERQIFEQALDRLAAEYGALEGLDKQGAID 257 >gi|163797039|ref|ZP_02190995.1| Transcriptional regulator [alpha proteobacterium BAL199] gi|159177786|gb|EDP62337.1| Transcriptional regulator [alpha proteobacterium BAL199] Length = 166 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 80/153 (52%), Positives = 118/153 (77%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+TG+ +VYP HGVG I + Q VAG +L+ VI F++D+M L++PVGKA G+R+LS Sbjct: 8 FKTGDFVVYPTHGVGLIKGTETQIVAGTELDLLVIDFEQDRMTLRIPVGKARTSGLRRLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL+ ++G+A+V+RTMWSRRAQEY+AKINSGD ++IAEVVRDL R+ +Q ++SY Sbjct: 68 SRKQMDVALQKLKGRAKVRRTMWSRRAQEYEAKINSGDPVSIAEVVRDLRRSSNQADQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SERQ+Y++A++R+ RE A + I E A++ +E Sbjct: 128 SERQMYQAAIDRLAREFAKIEQIDEVTAVDRLE 160 >gi|288957083|ref|YP_003447424.1| transcriptional regulator [Azospirillum sp. B510] gi|288909391|dbj|BAI70880.1| transcriptional regulator [Azospirillum sp. B510] Length = 166 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 119/157 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYPAHGVG + I+ +AG++++ + I F+K++M LKVPV KA + G+R+LS Sbjct: 7 FDAGDFVVYPAHGVGRVEGIETHSIAGLEVQLYAITFEKERMTLKVPVTKARNAGLRRLS 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL+ ++G++RV+RTMWSRRAQEY+AKINSGD ++IAEVVRDL+R Q ++SY Sbjct: 67 SKDRIKVALETLQGRSRVRRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGADQSDQSY 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SERQ+Y++AL R+ RE+AAV I E +A +E LS Sbjct: 127 SERQIYQAALERLARELAAVEKIDETKATERLESVLS 163 >gi|326386142|ref|ZP_08207766.1| CarD family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209367|gb|EGD60160.1| CarD family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 151 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/146 (56%), Positives = 110/146 (75%) Query: 30 ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA 89 + E++ +E+AGMKLE +V+ F+K++M L+VPV K IGMRKLS + AL ++GK Sbjct: 1 MVELQNEEIAGMKLELYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLKGKP 60 Query: 90 RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVRE 149 +VKRTMWSRRAQEY+AKINSGDL+AIAEV RDL R D QPE+SYSERQ++E+A +R+ RE Sbjct: 61 KVKRTMWSRRAQEYEAKINSGDLVAIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARE 120 Query: 150 IAAVNSISEPEAINLIEVNLSSKSSK 175 +AA+ EP A+ I V L+ + K Sbjct: 121 LAAMEKTDEPAALKKILVILNEHAPK 146 >gi|296537276|ref|ZP_06899162.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296262394|gb|EFH09133.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 108/142 (76%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+H+VYP HGVG + I+ VAG +L+ ++ F++++M L+VP+ KA G+RKL+ Sbjct: 68 FKAGDHVVYPTHGVGQVQGIESMAVAGTELKVIIVTFEENRMTLRVPLNKAASSGLRKLA 127 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A++ ++G+AR+KRTMWSRRAQEY+ KINSGD + IAEVVRDLHR QP++S+ Sbjct: 128 GGDRMGEAMETLKGRARIKRTMWSRRAQEYEQKINSGDPVQIAEVVRDLHRNAGQPDQSF 187 Query: 134 SERQLYESALNRMVREIAAVNS 155 SERQ+YE A++R+ E+AA++ Sbjct: 188 SERQIYELAMDRLAAEVAAIDG 209 >gi|209965508|ref|YP_002298423.1| CarD-like transcriptional regulator protein, putative [Rhodospirillum centenum SW] gi|209958974|gb|ACI99610.1| CarD-like transcriptional regulator protein, putative [Rhodospirillum centenum SW] Length = 166 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 112/157 (71%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYPAHGVG I I+ +A + + I F+K++M LKVPV KA G+R+LS Sbjct: 7 FAAGDHVVYPAHGVGKIIGIETHSIAEQTVTLYAIQFEKERMTLKVPVAKARAAGLRRLS 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ AL+ ++G +R+KR MWSRRAQEY+AKINSGD ++IAEVVRDL+R + Q ++SY Sbjct: 67 SKDRIKAALETLQGPSRIKRIMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGEDQSDQSY 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SERQ+Y +AL R+ RE+A V I E +A +E LS Sbjct: 127 SERQIYHAALERLARELAVVEKIDERKATERLEAVLS 163 >gi|294084639|ref|YP_003551397.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664212|gb|ADE39313.1| Transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 168 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 111/149 (74%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HGVG I + +EVAG++LE V+ F++D+M L+VP+ KA +G+R L Sbjct: 8 AFEEGDFVVYPTHGVGRILGTETREVAGIELEMLVVRFEQDRMTLRVPMEKAKTLGLRTL 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S + +++A+ ++GKARV+RTMWSRRA EY+ KI SGD ++IAEVVRDLHR +Q E+S Sbjct: 68 SSSKQMDQAITTLQGKARVRRTMWSRRAAEYETKIKSGDPVSIAEVVRDLHRRTNQSEQS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 YSERQ+Y++AL R+ RE AA+ I + A Sbjct: 128 YSERQMYQAALERLAREYAAIEKIDQDAA 156 >gi|23009120|ref|ZP_00050287.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Magnetospirillum magnetotacticum MS-1] Length = 143 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/133 (60%), Positives = 111/133 (83%), Gaps = 1/133 (0%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114 M L+VP KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI+ Sbjct: 1 MVLRVPTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLIS 60 Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + EVVRDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L +KS Sbjct: 61 VTEVVRDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSL-AKSP 119 Query: 175 KTEKSTSENQDKA 187 + K+ +E + +A Sbjct: 120 RRAKADAETEAEA 132 >gi|157825168|ref|YP_001492888.1| transcriptional regulator [Rickettsia akari str. Hartford] gi|157799126|gb|ABV74380.1| Transcriptional regulator [Rickettsia akari str. Hartford] Length = 177 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/167 (47%), Positives = 117/167 (70%), Gaps = 2/167 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T + + + GF+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 5 TQSENKTEQKSGFKIGQRIVYPAHGVGEITNIEYNTIAGTEIKVYVISFSQDKMTLKVPV 64 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD Sbjct: 65 SRAAVVGLRAVASRKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 LH+ + ++SYSER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 125 LHK-NVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEV 170 >gi|157964091|ref|YP_001498915.1| transcriptional regulator [Rickettsia massiliae MTU5] gi|157843867|gb|ABV84368.1| Transcriptional regulator [Rickettsia massiliae MTU5] Length = 195 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 35 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 94 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 95 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 153 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 154 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 188 >gi|67458425|ref|YP_246049.1| transcriptional regulator [Rickettsia felis URRWXCal2] gi|67003958|gb|AAY60884.1| Transcriptional regulator [Rickettsia felis URRWXCal2] Length = 177 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 17 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 76 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 77 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 135 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 136 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 170 >gi|239948445|ref|ZP_04700198.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes scapularis] gi|239922721|gb|EER22745.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes scapularis] Length = 177 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 17 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 76 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 77 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 135 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 136 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 170 >gi|15891953|ref|NP_359667.1| hypothetical protein RC0030 [Rickettsia conorii str. Malish 7] gi|157827900|ref|YP_001494142.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932588|ref|YP_001649377.1| carD-like transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|238650343|ref|YP_002916195.1| carD-like transcriptional regulator [Rickettsia peacockii str. Rustic] gi|15619064|gb|AAL02568.1| unknown [Rickettsia conorii str. Malish 7] gi|157800381|gb|ABV75634.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907675|gb|ABY71971.1| carD-like transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|238624441|gb|ACR47147.1| carD-like transcriptional regulator [Rickettsia peacockii str. Rustic] Length = 173 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 13 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 72 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 73 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 131 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 132 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 166 >gi|157803212|ref|YP_001491761.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel] gi|157784475|gb|ABV72976.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel] Length = 175 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 15 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFAQDKMTLKVPVNRATIVGLRAVA 74 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 75 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 133 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 134 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 168 >gi|229586256|ref|YP_002844757.1| Transcriptional regulator [Rickettsia africae ESF-5] gi|228021306|gb|ACP53014.1| Transcriptional regulator [Rickettsia africae ESF-5] Length = 173 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 13 FKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 72 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 73 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 131 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 132 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 166 >gi|34581009|ref|ZP_00142489.1| hypothetical protein [Rickettsia sibirica 246] gi|28262394|gb|EAA25898.1| unknown [Rickettsia sibirica 246] Length = 173 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A +G+R ++ Sbjct: 13 FKIGQRIVYPAHGVGEITNIEYYTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVA 72 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ + ++SY Sbjct: 73 SRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHK-NVDNDRSY 131 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 SER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 132 SERTLYESALNRLAGELAILENIHPTEAINKLVEV 166 >gi|51473313|ref|YP_067070.1| hypothetical protein RT0102 [Rickettsia typhi str. Wilmington] gi|51459625|gb|AAU03588.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 177 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/168 (47%), Positives = 117/168 (69%), Gaps = 2/168 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVP Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGNEIKVYVISFSQDKMTLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 64 VSRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 DLH+ + ++SYSER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 124 DLHK-NVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEV 170 >gi|91206102|ref|YP_538457.1| transcriptional regulator [Rickettsia bellii RML369-C] gi|157826465|ref|YP_001495529.1| transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069646|gb|ABE05368.1| Transcriptional regulator [Rickettsia bellii RML369-C] gi|157801769|gb|ABV78492.1| Transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 178 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 116/165 (70%), Gaps = 2/165 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + K + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM +KVPV + Sbjct: 8 EDKTEQQKSEFKIGQRIVYPAHGVGEITNIENHTIAGTEIKVYVISFPQDKMTVKVPVSR 67 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++A+AEV+RDLH Sbjct: 68 ATVVGLRAVASKKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAVAEVLRDLH 127 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 + + ++SYSER LYE+ALNR+ E+A + +I EAIN L+EV Sbjct: 128 K-NVDNDRSYSERTLYEAALNRLAGELAILENIDSSEAINKLVEV 171 >gi|15603905|ref|NP_220420.1| hypothetical protein RP026 [Rickettsia prowazekii str. Madrid E] gi|3860596|emb|CAA14497.1| unknown [Rickettsia prowazekii] Length = 201 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 2/168 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP Sbjct: 28 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 87 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 88 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 147 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 DLH+ + ++SYSER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 148 DLHK-NVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEV 194 >gi|292571621|gb|ADE29536.1| Transcriptional regulator [Rickettsia prowazekii Rp22] Length = 177 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 2/168 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 64 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN-LIEV 167 DLH+ + ++SYSER LYESALNR+ E+A + +I EAIN L+EV Sbjct: 124 DLHK-NVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEV 170 >gi|114328507|ref|YP_745664.1| carD-like transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316681|gb|ABI62741.1| carD-like transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 216 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 1/152 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T Q A +Q F+TG+ +VYP HGVG + + Q+VAG K+E I+F +++M +++P Sbjct: 18 TAAQSSPAAKQ-FKTGDAVVYPGHGVGRVDHVGMQDVAGHKIEMIQISFAENQMTIRLPA 76 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 K G+RKLS E+A+ + G+ R+ + MWS+RAQEY A+INSGDL+A+AE++RD Sbjct: 77 AKVATTGLRKLSSKADAEKAIAALSGRPRISKVMWSKRAQEYQARINSGDLLALAELLRD 136 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAV 153 L R + S+SERQ++E+AL+R EIA V Sbjct: 137 LRRNAGSQDGSFSERQIFETALDRFASEIATV 168 >gi|330813497|ref|YP_004357736.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp. IMCC9063] gi|327486592|gb|AEA80997.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp. IMCC9063] Length = 273 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 104/150 (69%), Gaps = 3/150 (2%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K+D ++ ++ ++++YP HG+G IT +++ +AG+ + F+ I KDK+ L +P + Sbjct: 100 KKQDNEKRTYKIKDYVIYPKHGIGQITAVEKDTIAGIDINFYKIEITKDKLVLTIPTNQQ 159 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R LS V +A+ +++GKA+VKRTMWSRRAQEY+ KINSG++ IAEVVRDL++ Sbjct: 160 GH--LRSLSSTGQVAKAISILKGKAKVKRTMWSRRAQEYEQKINSGEIYQIAEVVRDLNK 217 Query: 125 TDSQP-EKSYSERQLYESALNRMVREIAAV 153 P ++SYSERQL+E A R++ E+ V Sbjct: 218 NTDMPVDQSYSERQLFEKAFERLLGEVTVV 247 >gi|162147634|ref|YP_001602095.1| CarD family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542263|ref|YP_002274492.1| CarD family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786211|emb|CAP55793.1| Transcriptional regulator, CarD family [Gluconacetobacter diazotrophicus PAl 5] gi|209529940|gb|ACI49877.1| transcriptional regulator, CarD family [Gluconacetobacter diazotrophicus PAl 5] Length = 196 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLAKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 SER+L+E+A R V E+A + EP A+ Sbjct: 158 SERKLFEAAQERFVAEVAVLEG-KEPTAV 185 >gi|148284672|ref|YP_001248762.1| putative transcriptional factor regulator [Orientia tsutsugamushi str. Boryong] gi|146740111|emb|CAM80284.1| putative transcriptional factor regulator [Orientia tsutsugamushi str. Boryong] Length = 169 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G+R +S Sbjct: 9 FKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSGLRAIS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL++ +++ ++SY Sbjct: 69 YKTDTDKIYKILSSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYK-NAEVDRSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 SER +YESA+ R+ RE+A + S+ E I Sbjct: 128 SERIIYESAITRLARELAILESVKYEEII 156 >gi|189183652|ref|YP_001937437.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda] gi|189180423|dbj|BAG40203.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda] Length = 169 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G+R +S Sbjct: 9 FKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSASGLRAIS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL++ +++ ++SY Sbjct: 69 YKTDTDKIYKILCSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYK-NAEVDRSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 SER +YESA+ R+ RE+A + S+ E I Sbjct: 128 SERTIYESAITRLARELAILESLKYEEII 156 >gi|262277939|ref|ZP_06055732.1| transcriptional regulator, CarD family [alpha proteobacterium HIMB114] gi|262225042|gb|EEY75501.1| transcriptional regulator, CarD family [alpha proteobacterium HIMB114] Length = 255 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 103/152 (67%), Gaps = 3/152 (1%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 ++ ++ ++++YP HG+G I + + +AG++ + I KDK+ L +P + +R Sbjct: 86 KRTYKVKDYVIYPKHGIGQIISVDKLTIAGIEASVYKIEITKDKLNLTIPTNQQQH--LR 143 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP- 129 LS + + +AL +++GKA++KRTMWSRRA EY+ KINSGD+ IAEVVRDL++ P Sbjct: 144 PLSSLNQINKALSILKGKAKIKRTMWSRRAAEYEQKINSGDIYQIAEVVRDLNKNTDMPV 203 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEA 161 ++SYSERQL+E A +R++ E++ V ISE E Sbjct: 204 DQSYSERQLFEKAYDRLLGEVSIVLKISEEEG 235 >gi|330994677|ref|ZP_08318600.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1] gi|329758318|gb|EGG74839.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1] Length = 196 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGVDEIAGTKLEMIQISFPGNQMTLRIPLSKARKSGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI-NLIEV 167 SER+L+E+A R V E+A + E + L EV Sbjct: 158 SERKLFEAAQERFVAEVAVLEGKDPTEVLEKLTEV 192 >gi|296116291|ref|ZP_06834907.1| transcriptional regulator, CarD family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977110|gb|EFG83872.1| transcriptional regulator, CarD family protein [Gluconacetobacter hansenii ATCC 23769] Length = 196 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 68/146 (46%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLSKARKSGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEP 159 SER+L+E+A R V E+A + EP Sbjct: 158 SERKLFEAAQERFVAEVAVLEG-KEP 182 >gi|258542109|ref|YP_003187542.1| CarD family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633187|dbj|BAH99162.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-01] gi|256636244|dbj|BAI02213.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-03] gi|256639299|dbj|BAI05261.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-07] gi|256642353|dbj|BAI08308.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-22] gi|256645408|dbj|BAI11356.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-26] gi|256648463|dbj|BAI14404.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-32] gi|256651516|dbj|BAI17450.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654507|dbj|BAI20434.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-12] Length = 196 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/142 (45%), Positives = 93/142 (65%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNS 155 SER+L+E+A R V E+A + + Sbjct: 158 SERKLFEAAQERFVAEVAVLEN 179 >gi|329114138|ref|ZP_08242900.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001] gi|326696214|gb|EGE47893.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001] Length = 196 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/140 (45%), Positives = 92/140 (65%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAV 153 SER+L+E+A R V E+A + Sbjct: 158 SERKLFEAAQERFVAEVAVL 177 >gi|254455735|ref|ZP_05069164.1| CarD-like transcriptional regulator family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082737|gb|EDZ60163.1| CarD-like transcriptional regulator family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 279 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 105/154 (68%), Gaps = 3/154 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +H+VYP HGVG I+E K+ + G+ +E +VI F+KDK VPV K Sbjct: 79 KKQETEKREYKIKDHVVYPKHGVGQISEFKKINIGGIDVETYVIKFEKDKANGMVPVNKQ 138 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 139 S--HLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 196 Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSIS 157 D ++SYSERQL+E A R++ E V ++S Sbjct: 197 GDDLMVDQSYSERQLFEKAYERILSEFQIVLNMS 230 >gi|71083129|ref|YP_265848.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique HTCC1062] gi|71062242|gb|AAZ21245.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique HTCC1062] Length = 299 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 104/154 (67%), Gaps = 3/154 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K Sbjct: 100 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 158 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 159 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 217 Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSIS 157 D ++SYSERQL+E A R++ E V IS Sbjct: 218 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGIS 251 >gi|58040444|ref|YP_192408.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58002858|gb|AAW61752.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 184 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/149 (42%), Positives = 96/149 (64%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + +I EVA +E I+F ++M L++P+ KA G+RK+ Sbjct: 26 FREGDSIVYAAHGVGRVDKIGMVEVADTVIEMIQISFPGNQMTLRIPLAKARKAGLRKIV 85 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDLI IAEV+RDL R + S+ Sbjct: 86 TRDIVDKAMTVIKGKPHVSKGMWARRAVAYQEKINSGDLIQIAEVLRDLRRNVDSLDGSF 145 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 SER+L+E+A R V E+A + ++ + + Sbjct: 146 SERKLFEAAQERFVAEVAVLENVDPAQVL 174 >gi|91762444|ref|ZP_01264409.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique HTCC1002] gi|91718246|gb|EAS84896.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique HTCC1002] Length = 304 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 104/154 (67%), Gaps = 3/154 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K Sbjct: 105 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 163 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 164 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 222 Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSIS 157 D ++SYSERQL+E A R++ E V +S Sbjct: 223 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGVS 256 >gi|40062705|gb|AAR37618.1| transcriptional regulator, CarD family [uncultured marine bacterium 314] Length = 223 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 93/141 (65%), Gaps = 3/141 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + +++VYP HGVG I I + ++ + + F+ + +K+K+ L +P+ + +R +S Sbjct: 59 YNVKDYVVYPKHGVGKIISIDKAKMGDIDITFYKVLIEKEKLTLSIPINQQSH--LRHVS 116 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKS 132 + +A +++ K R+KRTMWSRRAQEYD KINSG L +AEVVRDL+ +TD E+S Sbjct: 117 SISQINKAASILKSKPRIKRTMWSRRAQEYDQKINSGKLYELAEVVRDLNKKTDIIAEQS 176 Query: 133 YSERQLYESALNRMVREIAAV 153 YSERQL+E A NR+ E+ V Sbjct: 177 YSERQLFEKAYNRLKSELEVV 197 >gi|86450984|gb|ABC96759.1| transcriptional regulator CarD family [Rhizobium leguminosarum bv. trifolii TA1] Length = 86 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/87 (66%), Positives = 71/87 (81%), Gaps = 3/87 (3%) Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163 DAKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ Sbjct: 1 DAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVR 60 Query: 164 LIEVNLSSKSSKTEKSTSEN--QDKAA 188 L E NL +K K K+ E+ QD+AA Sbjct: 61 LDETNL-NKGPKRGKAIEEDDSQDEAA 86 >gi|77917722|ref|YP_355537.1| putative transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77543805|gb|ABA87367.1| transcriptional regulator, CarD family [Pelobacter carbinolicus DSM 2380] Length = 161 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPA GVG I I+ +E G K++F+V+ M + +PV +GMR L Sbjct: 2 FKIGDMAVYPAQGVGVIEAIESKEFVGQKMDFYVLRIVDSDMTIMIPVNNVDSVGMRSLI 61 Query: 74 EAHFVERALKLVRGKARVKRTM--WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + V +++ K + + + WSRR ++Y+ KI SGD+ +AEV+R+L+ E Sbjct: 62 DKDRVRTVYDILKDKTQNQGNLASWSRRQRDYNEKIRSGDVFEVAEVLRELYMIREDKEL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SY E+++ E A +V+EIA + E + + +E Sbjct: 122 SYGEKKVLELARKLVVKEIALADGKDEQQVTDRVE 156 >gi|183222034|ref|YP_001840030.1| CarD family transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912101|ref|YP_001963656.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776777|gb|ABZ95078.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780456|gb|ABZ98754.1| Transcriptional regulator, CarD family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 193 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++VYP HGVG +TE+ ++ + G K + + + KM + +PV +A+D+G+R + Sbjct: 15 FKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSIPVDRAMDVGIRSII 74 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ L L++ W R Q KI SG + +A+V R+L+R E S Sbjct: 75 DKKEIKKVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVCRNLYRRAYGKELSI 134 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 ER+LYESA N + EIA + + EA N++ Sbjct: 135 MERKLYESAYNLVKMEIALSKGVPQEEAGNIV 166 >gi|108760890|ref|YP_630846.1| CarD family transcriptional regulator CdnL [Myxococcus xanthus DK 1622] gi|108464770|gb|ABF89955.1| transcriptional regulator, CarD family [Myxococcus xanthus DK 1622] Length = 164 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+ Sbjct: 1 MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGL 60 Query: 70 RKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+ Sbjct: 61 REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPE 160 + S+ ER++ ++A + +++E++ SE E Sbjct: 121 KDLSFGERKMLDTARSLLIKELSLAKDCSEDE 152 >gi|115378642|ref|ZP_01465793.1| transcriptional regulator, CarD family [Stigmatella aurantiaca DW4/3-1] gi|310820620|ref|YP_003952978.1| carD domain-containing protein transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364354|gb|EAU63438.1| transcriptional regulator, CarD family [Stigmatella aurantiaca DW4/3-1] gi|309393692|gb|ADO71151.1| Transcriptional regulator, CarD domain protein [Stigmatella aurantiaca DW4/3-1] Length = 165 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+ Sbjct: 1 MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGLVGL 60 Query: 70 RKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+ Sbjct: 61 REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPE 160 + S+ ER++ ++A + +++E++ SE E Sbjct: 121 KDLSFGERKMLDTARSLLIKELSLAKDCSEEE 152 >gi|294827601|ref|NP_710430.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|293385445|gb|AAN47448.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] Length = 181 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 91/168 (54%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++VYP HGVG I EI ++ + G K + +V+ KM + +PV KA + +R + + Sbjct: 13 KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIID 72 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +++ + L++ W R Q KI SG + + EV R+L R S E S Sbjct: 73 KKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIM 132 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 ER+LYESA N + E+A +++ EA NL+ L+S S +EK E Sbjct: 133 ERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEE 180 >gi|45656119|ref|YP_000205.1| CarD transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599352|gb|AAS68842.1| transcriptional regulator (CarD family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 197 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 91/168 (54%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++VYP HGVG I EI ++ + G K + +V+ KM + +PV KA + +R + + Sbjct: 29 KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIID 88 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +++ + L++ W R Q KI SG + + EV R+L R S E S Sbjct: 89 KKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIM 148 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 ER+LYESA N + E+A +++ EA NL+ L+S S +EK E Sbjct: 149 ERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEE 196 >gi|153005358|ref|YP_001379683.1| CarD family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028931|gb|ABS26699.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ K +G+ Sbjct: 9 MAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGL 68 Query: 70 RKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R++ V R ++R K V T W+RR +EY KI +G + IAEV+RDL+ S Sbjct: 69 REIIGEKDVRRVYTILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSD 128 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 + S+ ER++ ++A + +++E+A E + Sbjct: 129 KDLSFGERKMLDTARSLLIKELAIAKECGEDDV 161 >gi|86157697|ref|YP_464482.1| CarD family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197122995|ref|YP_002134946.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917784|ref|YP_002493088.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774208|gb|ABC81045.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172844|gb|ACG73817.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K] gi|219955638|gb|ACL66022.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ K +G+R++ Sbjct: 13 FKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREII 72 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V R ++R K V T W+RR +EY KI +G + IAEV+RDL+ S + S Sbjct: 73 GEKDVRRVYGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLS 132 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 + ER++ ++A + +++E+A + E + Sbjct: 133 FGERKMLDTARSLLIKELAIAKACDEQDV 161 >gi|116327105|ref|YP_796825.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332238|ref|YP_801956.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119849|gb|ABJ77892.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125927|gb|ABJ77198.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 181 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 92/169 (54%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++VYP HGVG I EI ++ + G K + +V+ KM + +PV KA + +R + + Sbjct: 13 KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIID 72 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +++ + L++ W R Q KI SG + + EV R+L R S E S Sbjct: 73 KKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIM 132 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 ER+LYESA N + E+A +++ EA NL+ L+S + +EK E+ Sbjct: 133 ERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLAPSEKKAEED 181 >gi|282883398|ref|ZP_06291990.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|300813669|ref|ZP_07093991.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281296754|gb|EFA89258.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|300512211|gb|EFK39389.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG GTI I+++E+ G K E++V+ +K+ + +PV KA ++G+RK+ Sbjct: 2 FKIGDKVVYPMHGAGTIVAIEDREILGKKHEYYVLLLPINKLKVMIPVKKADEVGVRKIM 61 Query: 74 EAHFVERALKLVRGKARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E +E L+++ + + K T W+RR + KI SG+LI IA V++ L + DS+ S Sbjct: 62 EISEMEEVLEILSSEEKFKMPTNWNRRYRFNLDKIKSGNLIEIAGVIKSLEKLDSKKSLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ A ++ E+A V E +++++ Sbjct: 122 TGERKILNEARIIIISEMALVFDKDVDEVVSMVD 155 >gi|95929125|ref|ZP_01311870.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans DSM 684] gi|95135026|gb|EAT16680.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans DSM 684] Length = 162 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPA GVG I I+ +E +G + +F+V+ M + VP A +GMR L Sbjct: 3 FSVGDKAVYPAQGVGIIESIETKEFSGEEHDFYVLRICDSDMTIMVPTANAEQVGMRGLV 62 Query: 74 EAHFVERALKLVRGKARVKRTM--WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + V++ +++ + ++ WSRR +EY+ KI SGDL+ +A V+R+L+ + E Sbjct: 63 DKAHVQKVYDVLQNTDAMAGSISSWSRRQREYNEKIKSGDLLEVAAVLRELYMIGNGKEL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SY E+++ E A +V+E+A + E + + +E Sbjct: 123 SYGEKKVLELARRLVVKEVAFAEGVEEDQICSRVE 157 >gi|323703787|ref|ZP_08115425.1| transcriptional regulator, CarD family [Desulfotomaculum nigrificans DSM 574] gi|323531256|gb|EGB21157.1| transcriptional regulator, CarD family [Desulfotomaculum nigrificans DSM 574] Length = 158 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 90/153 (58%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ + ++G+R++ Sbjct: 2 FKIGDKVVYPMHGAGVIEAIEEKEVLGEKRKYYILRLPIGDMKVMIPINNSEEVGLREII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++ + +++GK V T W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 62 APDEVKQVMGVLQGKTSVMSTNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ E+A ++ E+ + E +A ++I+ Sbjct: 122 GERKMLENARQILISELVLATELEEDKARSMID 154 >gi|332800107|ref|YP_004461606.1| CarD family transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697842|gb|AEE92299.1| transcriptional regulator, CarD family [Tepidanaerobacter sp. Re1] Length = 158 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 86/153 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+E+ G K +++++ M + +P+ DIG+R++ Sbjct: 2 FNIGDKVVYPMHGAGVIEAIEEKEILGEKQKYYIMRMPIGDMKVMIPLNNIEDIGVRQVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++RG+ + W+RR + KI SG++ +AEVVR+L D + S Sbjct: 62 GDEEISEVFNILRGEKSKMSSNWNRRYRANMDKIRSGNIFQVAEVVRNLSLRDKEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ E+A + +V EI +I E EA+ +IE Sbjct: 122 GERKMLENAKHILVSEIVLSKNIQEDEALQMIE 154 >gi|134298063|ref|YP_001111559.1| CarD family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134050763|gb|ABO48734.1| transcriptional regulator, CarD family [Desulfotomaculum reducens MI-1] Length = 158 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 86/153 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ D+G+R + Sbjct: 2 FKIGDKVVYPMHGAGVIEAIEEKEVLGKKRQYYILRLPIGDMKVMIPISNCDDVGLRGII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V L+++ G+ V W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 62 DRDEVSTVLEVLEGQTTVMSGNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ E+A ++ E+ + E +A +LI+ Sbjct: 122 GERKMLENARQILISELVLAAEMEETKARSLID 154 >gi|320354570|ref|YP_004195909.1| CarD family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123072|gb|ADW18618.1| transcriptional regulator, CarD family [Desulfobulbus propionicus DSM 2032] Length = 159 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPAHGVG I IK Q + G+ F+V+ + M + +P + ++G+R + Sbjct: 2 FSKGDMAVYPAHGVGLIEAIKTQSIGGIDQSFYVMKILDNDMTIMIPTATSANVGLRAII 61 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V + + +++ + ++ W+RR +EY KI +G + +A V+RDL + S Sbjct: 62 SGEDVPKVIDILKERDIKITAQTWNRRYREYMEKIKTGSVFEVAVVLRDLFLLKEDKDLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISE 158 Y ER++ ++A N +V+E++ + E Sbjct: 122 YGERKMLDTAKNLLVKELSLAKQMEE 147 >gi|116751073|ref|YP_847760.1| CarD family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700137|gb|ABK19325.1| transcriptional regulator, CarD family [Syntrophobacter fumaroxidans MPOB] Length = 159 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPAHGVG I ++ + + G K +F+++ + M + +PV A +G+R L Sbjct: 2 FKIGDLAVYPAHGVGKIESVETKSIGGKKQDFYIMRILDNDMKIMIPVPNAHTVGLRGLI 61 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + +++ + V W+RR +EY KI +G + +AEV+RDL E S Sbjct: 62 GLEDISKVYDILQKREVSVNGGTWNRRYREYMEKIKTGSIYELAEVLRDLTVLKGDKELS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 + ER++ ++A +++E++ V ISE E Sbjct: 122 FGERKMLDTARTLLLKELSIVQDISEEEV 150 >gi|301060351|ref|ZP_07201214.1| CarD-like protein [delta proteobacterium NaphS2] gi|300445547|gb|EFK09449.1| CarD-like protein [delta proteobacterium NaphS2] Length = 159 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPAHGVG I +I+ QE++G K +F+V+ + M + +P +G+R + Sbjct: 2 FQVGDLAVYPAHGVGVIEKIESQEISGCKQDFYVMRILDNDMIIMIPTTNVDHVGLRDII 61 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + +++ + + W+RR +EY KI +G + +AEV RDL E S Sbjct: 62 PKTELPKLFSILKKRDVTLDSQTWNRRYREYMEKIKTGSVFEVAEVYRDLLILRYDKELS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 + ER++ ++A +V+EI+ I+E + Sbjct: 122 FGERKMLDTARTLLVKEISLAKEITESQV 150 >gi|323700581|ref|ZP_08112493.1| transcriptional regulator, CarD family [Desulfovibrio sp. ND132] gi|323460513|gb|EGB16378.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans ND132] Length = 171 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 3/141 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A+++G+R + Sbjct: 2 FKVDELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAVNVGLRSVC 61 Query: 74 EAHF---VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A + +LK G W+RR +EY K+ SGDL +A V+++L E Sbjct: 62 PADVGQAIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELFLIGKDKE 121 Query: 131 KSYSERQLYESALNRMVREIA 151 S+ ER+L E A+ + E+A Sbjct: 122 LSFGERRLLEQAMGLVSMELA 142 >gi|303327050|ref|ZP_07357492.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3] gi|302863038|gb|EFL85970.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3] Length = 171 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 3/148 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG I I Q + G+ EF+++ + + L VPV A ++G+R L+ Sbjct: 2 FAPDDLVVYPAQGVGKIERIDRQNIGGIACEFYIVRIRANNITLMVPVNNAANVGLRTLT 61 Query: 74 EAHFVERALKLVRG---KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + L+ +RG K W+RR +EY ++ S DL + EV+R+L E Sbjct: 62 PEADAQGILETLRGDTDKTIYTGQNWNRRFREYSERLKSPDLAVVTEVLRELLLISRSKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISE 158 S+ ER+L E A+ + E+A V ++E Sbjct: 122 LSFGERRLQEQAMGLVTGELAEVLHLTE 149 >gi|302342168|ref|YP_003806697.1| CarD family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638781|gb|ADK84103.1| transcriptional regulator, CarD family [Desulfarculus baarsii DSM 2075] Length = 161 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPAHGVG I ++E+ + G + F+++ ++ M + VP A +G+R + Sbjct: 2 FDLGQLAVYPAHGVGRIEAVEEKTIGGAQQCFYILRILENDMIIMVPTANAGAVGLRPII 61 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V + L ++R ++ W+RR ++Y +KI +G + +AEV+RDL S E S Sbjct: 62 PTEEVPQVLSILRDHDVIIENQTWNRRYRDYMSKIKTGSVYEVAEVLRDLFILKSDKELS 121 Query: 133 YSERQLYESALNRMVREIA 151 + ER++ ++A N +V+E++ Sbjct: 122 FGERKMLDTARNLLVKELS 140 >gi|147676622|ref|YP_001210837.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146272719|dbj|BAF58468.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 158 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 87/153 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ ++G+R + Sbjct: 2 FKIGDKVVYPMHGAGVIEAIEEKEVLGEKRQYYILRLPVGDMKVMIPITSGEEVGLRGVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V+R ++R ++ W+RR + KI SG++ +AEVVR+L + D + S Sbjct: 62 DREGVQRVFHILRQQSSAMSPNWNRRYRANLEKIKSGNIYEVAEVVRNLVKRDREKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ ESA ++ E+ + E +A +L++ Sbjct: 122 GERKMLESARQILLSELVLATELEEEKAQSLLD 154 >gi|212716130|ref|ZP_03324258.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM 16992] gi|212661497|gb|EEB22072.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM 16992] Length = 198 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 4/180 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A N + EI+ + E EA L++VNL + ++ EK +E ++AA Sbjct: 122 LSAGEKRMLTKARNILTSEISLSEKLDETEAQRLLDVNLGYEPAQPGDEKHHTEAPEEAA 181 >gi|220904723|ref|YP_002480035.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869022|gb|ACL49357.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 171 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG I I Q + G+ +F+++ + + L VPV A +G+R L+ Sbjct: 2 FTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTLT 61 Query: 74 EAHFVERALKLVR---GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 ER L+ +R GK W+RR +EY ++ S +L + EV+R+L E Sbjct: 62 TTEEAERILEELRSSTGKVVHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISE 158 S+ ER+L E A+ + E+A V + E Sbjct: 122 LSFGERRLQEQAMGLVTGELAEVLKVEE 149 >gi|46579983|ref|YP_010791.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120602605|ref|YP_967005.1| CarD family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46449399|gb|AAS96050.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str. Hildenborough] gi|120562834|gb|ABM28578.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris DP4] gi|311234019|gb|ADP86873.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris RCH1] Length = 171 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F E +VYPA GVG + I+ QEV G+ EF+++ + + L VPV A ++G+R L Sbjct: 2 FSPDELVVYPAQGVGKVERIERQEVGGVTAEFYIVRILTNNVTLMVPVKNAANVGLRPLC 61 Query: 74 E---AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A+ + +L+ G W+RR +EY K+ S DL +A V+R+L E Sbjct: 62 STERANEIMLSLEDRSGFTGYTGQNWNRRYREYSEKLKSPDLGDVAYVLRELLLIGKDKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEA 161 S+ ER+L E A++ +V E++ V +++ E Sbjct: 122 LSFGERRLLEQAMSLLVVELSHVQGLTQEEV 152 >gi|308274564|emb|CBX31163.1| hypothetical protein N47_E46750 [uncultured Desulfobacterium sp.] Length = 183 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPAHGVG I I+ + V G K +F++I ++ M + +P +G+R + Sbjct: 18 FHVGDLAVYPAHGVGRIEAIENKIVNGEKHDFYIIKVLENGMVIMIPTWNVDSVGLRDVI 77 Query: 74 EAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + ++ K + W+RR ++Y KI +G L +AEV RDL+ + Sbjct: 78 SEGEVPKIYDFMKSKKETPIDTQTWNRRYRDYMDKIKTGSLYDVAEVFRDLYLLKLTKDL 137 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S+ ER+L+++A +V+E++ + SE + + IE SK + Sbjct: 138 SFGERKLFDTAQTLLVKELSTARNTSEDKIFSEIESLFISKEN 180 >gi|78045099|ref|YP_361149.1| CarD family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997214|gb|ABB16113.1| transcriptional regulator, CarD family [Carboxydothermus hydrogenoformans Z-2901] Length = 160 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G +VYP HG G I EI+E+ A ++++V++F M L +PV K +G+R + Sbjct: 2 FKVGAKVVYPMHGAGIIREIEERLAADRVMKYYVLSFWATNMILWLPVEKVERVGLRPVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE+ +++ + W++R + + KI S D++AIA+VVRDL R + S Sbjct: 62 GKDMVEKVFAVLKEGEEKIHSNWNKRYKNHVDKIKSNDILAIADVVRDLRRREKVKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E++L ESA +V E+ V E + + +IE Sbjct: 122 GEKKLLESARQILVSELILVLEEDEEKVLAMIE 154 >gi|229817858|ref|ZP_04448140.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM 20098] gi|229784758|gb|EEP20872.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM 20098] Length = 197 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAARVEAITERTVRGVTREYLELSVLSADGLVINVPVDNAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A + + EIA I E EA L++VNL +K EK ++ ++AA Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEKIEESEAQRLLDVNLGYSPAKPGDEKHHTQEPEEAA 181 >gi|225181295|ref|ZP_03734740.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus AHT 1] gi|225168075|gb|EEG76881.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus AHT 1] Length = 164 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 79/144 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+E+ G + ++++ M + +P+ IG+R++ Sbjct: 2 FNIGDKVVYPMHGAGVIEAIEEKEILGARKRYYIMNIPIGDMKVMIPMDNVDQIGLREVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + H VE+ L ++R T W+RR + KI SGD+ +AEVVR+L + + S Sbjct: 62 DTHGVEQVLTILRDNHSKMSTNWNRRYRANMEKIKSGDIFQVAEVVRNLMLREREKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSIS 157 ER++ +SA +V E+ + S Sbjct: 122 GERKMLDSAKQILVSELVLAQNTS 145 >gi|296131792|ref|YP_003639039.1| transcriptional regulator, CarD family [Thermincola sp. JR] gi|296030370|gb|ADG81138.1| transcriptional regulator, CarD family [Thermincola potens JR] Length = 158 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+EV G ++V+ M + +P D+G+R++ Sbjct: 2 FNIGDKVVYPMHGAGIIEAIEEKEVLGEVRSYYVMRLPIGDMKVMIPTSNVKDLGLRQVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V+R L ++ K V W++R + KI SG++ +AEVVR+L R D + S Sbjct: 62 DEEGVQRVLNILSEKDTVMSANWNKRYRTNMEKIKSGNIFEVAEVVRNLMRRDQEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 ER++ E+A ++ E+ + E Sbjct: 122 GERKMLENARQILISELVLARGVKE 146 >gi|224368792|ref|YP_002602953.1| transcriptional regulator (CarD family protein) [Desulfobacterium autotrophicum HRM2] gi|223691508|gb|ACN14791.1| transcriptional regulator (CarD family protein) [Desulfobacterium autotrophicum HRM2] Length = 153 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80 VYPAHGVG I I+ +E+ G + F+++ + M + +P +G+R++ + V Sbjct: 3 VYPAHGVGCIESIESKEINGENMNFYMMKIVDNGMVIMIPTANVESVGLREVIKQKDVPE 62 Query: 81 ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139 ++++ K + + W+RR +EY KI +G + IAEV RDL + + + S+ ER+L Sbjct: 63 VYRIMQEKGPDLDKQTWNRRYREYMDKIKTGSIYDIAEVFRDLFQLKLEKDLSFGERKLL 122 Query: 140 ESALNRMVREIAAVNSISEPEAINLIE 166 ++A N +V+E++ ++ E + IE Sbjct: 123 DTAQNLLVQELSMAKNMDEAAMMTEIE 149 >gi|255325865|ref|ZP_05366957.1| transcriptional regulator, CarD family [Corynebacterium tuberculostearicum SK141] gi|311740175|ref|ZP_07714007.1| CarD family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297077|gb|EET76402.1| transcriptional regulator, CarD family [Corynebacterium tuberculostearicum SK141] gi|311304730|gb|EFQ80801.1| CarD family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 194 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP+ A ++G+R + Sbjct: 3 YKVGEVVVYPHHGAAVIEDIETREMGGETLEYLVLHINQSDLVVRVPIKNADNVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A + E +A ++E Sbjct: 123 GEKRMLGKARTILVGELALAKPVDEKKADTMME 155 >gi|328952413|ref|YP_004369747.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans DSM 11109] gi|328452737|gb|AEB08566.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans DSM 11109] Length = 169 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 1/139 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPAHGVG I I+++E++G F+++ + M + +P A ++G+R + Sbjct: 2 FQLGDLAVYPAHGVGVIESIEDKEISGNHQTFYIMRILDNNMIIMIPTHNASNVGLRGII 61 Query: 74 EAHFVERALKLVRGKAR-VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V +++ K R V+ W+RR ++Y KI +G L +AEV+RDL + S Sbjct: 62 DGQAVTTIYEILAKKDRVVEHQTWNRRYRDYMEKIKTGSLFHVAEVLRDLTLLKLDKDLS 121 Query: 133 YSERQLYESALNRMVREIA 151 + ER++ ++A N +V+E++ Sbjct: 122 FGERKMLDTAKNLLVKELS 140 >gi|148272243|ref|YP_001221804.1| putative transcription factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830173|emb|CAN01106.1| putative transcription factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 164 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 79/148 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R + Sbjct: 3 FEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D S Sbjct: 63 DSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGVSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++ EA Sbjct: 123 GEKRMLSKARQILVSELALAQKSTDEEA 150 >gi|270284727|ref|ZP_05966557.2| transcriptional regulator [Bifidobacterium gallicum DSM 20093] gi|270276297|gb|EFA22151.1| transcriptional regulator [Bifidobacterium gallicum DSM 20093] Length = 198 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +AH V + +++R K WSRR + K+ +GD+ IAEVVRDL + D Sbjct: 62 IVDAHEVAKVFEILRTPIIEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + + EIA + E EA L++VNL Sbjct: 122 LSAGEKRMLTKARSVLTSEIALSEKLEETEAQRLLDVNLG 161 >gi|149919688|ref|ZP_01908166.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] gi|149819459|gb|EDM78889.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] Length = 165 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F G VYPAHGV I ++ + V G L F+ + + + VPV KA + GMR Sbjct: 5 QRFDIGSTAVYPAHGVADIIGVETKTVGGHDLSFYQLQVRGSGLKIIVPVNKANENGMRP 64 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L+ ++R +++R + R W+RR + + KI +G + +AEV RDL SQ Sbjct: 65 LAGPDAIDRTFQILRDHDVPIDRQTWNRRYRNFMDKIRAGAIEGVAEVYRDLALLRSQKT 124 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPE 160 S+ ER++ +A + +V E+A SE E Sbjct: 125 LSHGEREMLRTARDLLVGELAVARETSESE 154 >gi|170781116|ref|YP_001709448.1| hypothetical protein CMS_0684 [Clavibacter michiganensis subsp. sepedonicus] gi|169155684|emb|CAQ00804.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 164 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 79/148 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R + Sbjct: 3 FEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D S Sbjct: 63 DSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGVSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++ EA Sbjct: 123 GEKRMLAKARQILVSELALAQKSTDEEA 150 >gi|302390930|ref|YP_003826750.1| CarD family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203007|gb|ADL11685.1| transcriptional regulator, CarD family [Acetohalobium arabaticum DSM 5501] Length = 169 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 81/138 (58%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F TG+ IVYP HG GTIT+I+++EV G +++V+ +M + +P+ DIG+R++ Sbjct: 2 FETGDKIVYPNHGAGTITDIEKKEVLGETKKYYVMQLPIGEMRVMIPMDNVDDIGIREVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V+ ++++G+ W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 62 SSDRVDDVFQILKGEKSEMSQNWNRRYRANTEKIKSGDIFEVAEVVRNLTLRDIEKGLST 121 Query: 134 SERQLYESALNRMVREIA 151 E+++ ++ ++ E+ Sbjct: 122 GEKKMLSNSRQILISELV 139 >gi|332703818|ref|ZP_08423906.1| transcriptional regulator, CarD family [Desulfovibrio africanus str. Walvis Bay] gi|332553967|gb|EGJ51011.1| transcriptional regulator, CarD family [Desulfovibrio africanus str. Walvis Bay] Length = 194 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 3/148 (2%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R+ R F + +VYPA GVG + I+ QE+ G EF+++ + + L VPV A + Sbjct: 19 REGTRPVFSPNDLVVYPAQGVGRVERIQRQEIGGASTEFYIVRILSNNVTLMVPVPNARN 78 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTM---WSRRAQEYDAKINSGDLIAIAEVVRDLH 123 +G+R + A E L+ ++ ++ W+RR +EY K+ SG L +A V+++L Sbjct: 79 VGLRPVCSATSGEAILESLKDRSDFTGYTGQNWNRRYREYSEKLKSGALEDVAYVLKELL 138 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIA 151 + E S+ ER+L E A+N + E++ Sbjct: 139 LIGNDKELSFGERRLLEQAMNLITLELS 166 >gi|317152592|ref|YP_004120640.1| transcription factor carD [Desulfovibrio aespoeensis Aspo-2] gi|316942843|gb|ADU61894.1| transcription factor CarD [Desulfovibrio aespoeensis Aspo-2] Length = 171 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 5/150 (3%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A ++G+R + Sbjct: 2 FKVNELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAKNVGLRSVC 61 Query: 74 EAHF---VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + +LK G W+RR +EY K+ SGDL +A V+++L E Sbjct: 62 SLRVGQEIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLSDVAYVLKELFLIGRDKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPE 160 S+ ER+L E A+ + E+A S+ P+ Sbjct: 122 LSFGERRLLEQAMGLVSMELAY--SVDRPQ 149 >gi|228924323|ref|ZP_04087573.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835349|gb|EEM80740.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 158 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++FVI KM + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISKMQVMIPTGKIVNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYRFLVSELELIKGITE 151 >gi|309812604|ref|ZP_07706349.1| CarD-like protein [Dermacoccus sp. Ellin185] gi|308433455|gb|EFP57342.1| CarD-like protein [Dermacoccus sp. Ellin185] Length = 160 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 82/148 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG TI EIK +++ G ++ V+ + + ++VP +G+R + Sbjct: 3 FKVGETVVYPHHGAATIEEIKVRKIKGEDKQYLVLNVAQGDLTIEVPAENCDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ +++R + + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 63 DKAGLEKVFEVLRAEHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLAKARQILVSELALAEHTNEDKA 150 >gi|225351869|ref|ZP_03742892.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157116|gb|EEG70455.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 198 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 4/180 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A + + EI+ + E EA L++VNL + ++ E+ +E ++AA Sbjct: 122 LSAGEKRMLTKARSILTSEISLSEHLDEAEAQRLLDVNLGYEPAQPGDEEHHTEAPEEAA 181 >gi|313887993|ref|ZP_07821671.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845948|gb|EFR33331.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 160 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVYP HG G I I+E+E+ G +++++ + + + VPV A +IG+R +S Sbjct: 2 FNIGDKIVYPMHGAGEIVAIEEREILGDVHKYYIMRLPINDLKVMVPVKNAKEIGVRDIS 61 Query: 74 EAHFVERALKLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +A +E+ LK + + V W+RR + KI SGDL+ IA+VVR L D + S Sbjct: 62 DADTMEKVLKALSSEEEVSMPKNWNRRYRYNLDKIKSGDLMEIADVVRSLESLDREKSLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ A +V E+ V + E LI+ Sbjct: 122 TGERKILNEAKQIIVSEMVLVFEKNVEEVTKLID 155 >gi|258513613|ref|YP_003189835.1| transcriptional regulator, CarD family [Desulfotomaculum acetoxidans DSM 771] gi|257777318|gb|ACV61212.1| transcriptional regulator, CarD family [Desulfotomaculum acetoxidans DSM 771] Length = 158 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G ++++ M + +P+ D+G+R++ Sbjct: 2 FKIGDKVVYPMHGAGVIEAIEEKEVLGEIKHYYILRLPIGNMKVMIPIDHGRDVGLRQVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V+ L+++ K+ W+RR + KI SG++ +AEVVR+L + D + S Sbjct: 62 TRDDVQMVLRILSDKSTSMPPNWNRRYRANLEKIKSGNIYEVAEVVRNLIKRDKEKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ E+A ++ E+ + E +A +L++ Sbjct: 122 GERKMLENARQILISELVLATELEEDKAQSLVD 154 >gi|158319511|ref|YP_001512018.1| CarD family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139710|gb|ABW18022.1| transcriptional regulator, CarD family [Alkaliphilus oremlandii OhILAs] Length = 167 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 83/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG G I I+E+E+ G + +++++ M + +P+ + DIG+RK+ Sbjct: 2 FNIGEKVVYPIHGAGVIESIEEREILGERRKYYIMKMPIGDMQVMIPLDQIDDIGIRKVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L+++ W+RR + I +GD+ +A+VVR+L + + S Sbjct: 62 DVEEIGSVLEILASDTTKMHQNWNRRYRANMDLIKTGDIYEVADVVRNLTLMEKEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ +A ++ EI V ISE EA L+E Sbjct: 122 GERKMLNNARQILLSEIVLVAEISEEEASKLVE 154 >gi|167629441|ref|YP_001679940.1| transcriptional regulator, card family, putative [Heliobacterium modesticaldum Ice1] gi|167592181|gb|ABZ83929.1| transcriptional regulator, card family, putative [Heliobacterium modesticaldum Ice1] Length = 158 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I ++E+EV G K ++V+ M + VP G+ +IG+R++ Sbjct: 2 FAIGDKVVYPMHGAGVIEAVEEREVLGEKRLYYVLRLSLGDMRILVPSGQIAEIGLRQVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +A ++ + +++ + V W RR + K+ +GD+ A+AEVVR+L R + + S Sbjct: 62 DAIEADQVMSVLQSRKSVMSNNWHRRYRANLDKMKTGDVYAVAEVVRNLIRRNQEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 ER++ E+A +V E+ + PE I Sbjct: 122 GERRMLENAKQILVSELVLAYD-TPPEQI 149 >gi|227502085|ref|ZP_03932134.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306836888|ref|ZP_07469843.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|227077144|gb|EEI15107.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304567229|gb|EFM42839.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49726] Length = 194 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ GE +VYP HG I +I+ +E+ G +LE+ V+ ++ + ++VP A ++G+R + Sbjct: 3 YKVGEVVVYPHHGAAVIEDIETREMGGEELEYLVLHINQSDLVVRVPKKNADNVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A + + +A ++E Sbjct: 123 GEKRMLGKARTILVGELALAQPVDDKKADTMME 155 >gi|218885594|ref|YP_002434915.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756548|gb|ACL07447.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 171 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + ++ Q V G+ +F+++ + + L VPV A ++G+R L Sbjct: 2 FAQDQLVVYPAQGVGKVERVESQVVGGVATDFYIVRILGNNVTLMVPVRNAANVGLRSLC 61 Query: 74 EAHFVERALKLVR---GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L+ +R G W+RR +EY K+ SGDL +A V+R+L E Sbjct: 62 APELGAEILESLRDRSGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLRELLLIGRDKE 121 Query: 131 KSYSERQLYESALNRMVREIAAV 153 S+ ER+L E A+ + E+A V Sbjct: 122 LSFGERRLLEQAMGLITLELACV 144 >gi|85859811|ref|YP_462013.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722902|gb|ABC77845.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB] Length = 161 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPA GVG I I+ +EV G +F+++ + M + +P G A +G+R+L Sbjct: 2 FKVGDLAVYPAQGVGVIEAIESREVMGSTQKFYIMKIMSNGMKIMIPTGSAESVGLRELI 61 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V + ++++ K + + W++R +EY KI +G + IA V+RDL + S Sbjct: 62 LEDDVPKVYEILKNKDITIDKQTWNKRYREYLEKIKTGSVFEIARVLRDLLILKNDKNLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISE 158 + ER++ ++A + +++EI+ ++ E Sbjct: 122 FGERKMMDTAKSLLIKEISIASNAEE 147 >gi|152977078|ref|YP_001376595.1| CarD family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025830|gb|ABS23600.1| transcriptional regulator, CarD family [Bacillus cytotoxicus NVH 391-98] Length = 159 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K D G+R + Sbjct: 2 FQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVQDSGIRYVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + AL V A K W +R K+ SGD + AEVVRDL + + + Sbjct: 62 DQTTLNHALVDVHNGAPDKSLSWKQRYTLNMEKMKSGDFVDGAEVVRDLLHRNKERTLNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A + ++ Sbjct: 122 SEKQMLDNARRILISEVALVQNVSENQATDFLQ 154 >gi|229191260|ref|ZP_04318247.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228592177|gb|EEK50009.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 82/145 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISKMQVMIPTGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|224282833|ref|ZP_03646155.1| transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|310287288|ref|YP_003938546.1| transcriptional regulator, CarD family [Bifidobacterium bifidum S17] gi|311064136|ref|YP_003970861.1| transcriptional regulator CarD [Bifidobacterium bifidum PRL2010] gi|313139992|ref|ZP_07802185.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251224|gb|ADO52972.1| transcriptional regulator, CarD family [Bifidobacterium bifidum S17] gi|310866455|gb|ADP35824.1| CarD transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313132502|gb|EFR50119.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 198 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 4/174 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+K E+ + D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAARVEAITERVVKGVKREYLQLTVLSSDGLVINVPVENAQKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A+ V + +++R K WSRR + K+ +GD+ IAEVVRDL + D Sbjct: 62 IVDANEVAKVFEILRTPIVEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSE 182 S E+++ A + + EIA + E E L++VNL K EK SE Sbjct: 122 LSAGEKRMLTRARSILTSEIALSEDLDEAEIQRLLDVNLGFSEPKPGDEKHHSE 175 >gi|171743211|ref|ZP_02919018.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC 27678] gi|283455808|ref|YP_003360372.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1] gi|306823056|ref|ZP_07456432.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801155|ref|ZP_07695284.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022] gi|171278825|gb|EDT46486.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC 27678] gi|283102442|gb|ADB09548.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1] gi|304553688|gb|EFM41599.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308222044|gb|EFO78327.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022] Length = 198 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + + EI+ + E EA L++VNL Sbjct: 122 LSAGEKRMLTKARSILTSEISLSEHLEEGEAQRLLDVNLG 161 >gi|262197699|ref|YP_003268908.1| CarD family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081046|gb|ACY17015.1| transcriptional regulator, CarD family [Haliangium ochraceum DSM 14365] Length = 162 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPA GV + I+ +E+ F+V+ +M + VP KA +G+R ++ Sbjct: 4 FSIGDKAVYPAQGVAEVVGIENKEINSTICSFYVLKVLDTEMQILVPKDKADQVGLRPVA 63 Query: 74 EAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE ++R + + + W+RR + + KI +G L +AEV RDL+R S S Sbjct: 64 SDEEVEEVFDILREQDIHIDKQTWNRRYRGFMEKIKTGSLFEVAEVFRDLYRLKSTKTLS 123 Query: 133 YSERQLYESALNRMVREIAAVNSISE 158 + ER++ ++A N +V+E+A + E Sbjct: 124 FGERRMLDTAKNLIVKELAVARNWDE 149 >gi|317481883|ref|ZP_07940910.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916674|gb|EFV38069.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 197 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R + Sbjct: 3 YKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + ++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS---SKSSKTEKSTSENQDKAA 188 S E+++ A + EIA I E EA L++VNL ++ + T+E +D AA Sbjct: 123 SAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEDAAA 182 >gi|169830398|ref|YP_001716380.1| CarD family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637242|gb|ACA58748.1| transcriptional regulator, CarD family [Candidatus Desulforudis audaxviator MP104C] Length = 158 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+E+ G + +++V+ M + VP +IG+R++ Sbjct: 2 FKIGDKVVYPMHGAGVIEAIEEKEILGERQQYYVLRLPVGNMKVMVPTANGPNIGLRQVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++ +++ + W+RR + KI SG++ +AEVVR+L R + + S Sbjct: 62 GQEEVQKVFGILKDVSTQMPGNWNRRYRANLEKIKSGNIYEVAEVVRNLARREREKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ ESA ++ E+ + E +A +++E Sbjct: 122 GEKRMLESARQILISELVLATEVEEDKARSMLE 154 >gi|229073467|ref|ZP_04206599.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228709655|gb|EEL61697.1| Transcriptional regulator, CarD [Bacillus cereus F65185] Length = 158 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYRFLVSELELIKGITE 151 >gi|298530964|ref|ZP_07018365.1| transcriptional regulator, CarD family [Desulfonatronospira thiodismutans ASO3-1] gi|298508987|gb|EFI32892.1| transcriptional regulator, CarD family [Desulfonatronospira thiodismutans ASO3-1] Length = 177 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYPA GVG + +I+EQ++ G K +++ + + L VPV A ++G+R +S Sbjct: 2 FSVGELVVYPAQGVGRVEKIEEQDLGGAKAVLYIVRILSNNVTLMVPVNNADNVGLRPVS 61 Query: 74 EAHFVERALKLVRGKARV---KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + L + ++ W+RR +EY K+ S DL +A V+++L E Sbjct: 62 GKGQGQEILSFLEDRSDFTGYSGQNWNRRYREYSDKLKSKDLQDVAYVLKELFLISRDKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S+ ER+L E A+ + E++ SI + EA + +E Sbjct: 122 LSFGERRLMEQAMGLISMELSYALSIDQEEAKSRVE 157 >gi|311896848|dbj|BAJ29256.1| putative CarD family transcriptional regulator [Kitasatospora setae KM-6054] Length = 160 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + L+VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVQQGDLTLRVPAENAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAETLLDEVLAS 160 >gi|297563240|ref|YP_003682214.1| CarD family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847688|gb|ADH69708.1| transcriptional regulator, CarD family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 160 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 85/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + V+ DK + ++VP A D+G+R + Sbjct: 3 FKVGDTVVYPHHGAARIEAIETRNIKGEDRIYLVLRVDKGDLTVRVPAANAEDVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A L++ L++ Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLTT 160 >gi|296268490|ref|YP_003651122.1| CarD family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091277|gb|ADG87229.1| transcriptional regulator, CarD family [Thermobispora bispora DSM 43833] Length = 163 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAARIEAITTRTINGQEKTYLVLKVDKGDLTVQVPAENAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER ++R + T WSRR + K+ SGD+ +AEVVRDL+R D + S Sbjct: 63 GQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLYRRDKERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLNS 160 >gi|332976449|gb|EGK13297.1| CarD family transcriptional regulator [Desmospora sp. 8437] Length = 162 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 81/157 (51%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M + F+ G+ IVYP HG G I ++E+E+ G K +++I + + +P + D+G+ Sbjct: 1 MGRLFQVGDKIVYPLHGAGVIDAVEEKEILGKKQRYYIIHMSLGNVQIMIPADRIDDMGL 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + +E L W++R + K+ +GD+ EV+RDL + + + Sbjct: 61 RHIVDPDTMENVFLLFNDDPSASSGSWNQRFRMNMDKMKTGDIFKTTEVIRDLAQINKEK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E++L ++A ++ E+ V I E +AI L++ Sbjct: 121 SLGTGEKKLLDNAKQILISELVLVKEIEEEQAIQLLD 157 >gi|297572193|ref|YP_003697967.1| CarD family transcripitonal regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932540|gb|ADH93348.1| transcriptional regulator, CarD family [Arcanobacterium haemolyticum DSM 20595] Length = 181 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 88/175 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I +I E+ + G K + + + M ++VP +G+R +S Sbjct: 3 FKVGETVVYPHHGAAYIEDISEKMMRGEKRLYLTLRIIQGDMVIQVPADSIEQVGLRDVS 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER ++R + + + WSRR + K+ SGD+ +AEVVRDL R +S S Sbjct: 63 NDEQLERVFAVLREENVEEPSNWSRRYKANGEKLTSGDVNKVAEVVRDLTRRNSDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 E+++ A + E+A IS+ EA L+ L + + S S ++A Sbjct: 123 GEKRMLAQARGILGSEVALGRGISDEEAAELLNEILGEFTPSPDSSESAGTPESA 177 >gi|162449975|ref|YP_001612342.1| putative transcription factor [Sorangium cellulosum 'So ce 56'] gi|161160557|emb|CAN91862.1| putative transcription factor [Sorangium cellulosum 'So ce 56'] Length = 168 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 86/155 (55%), Gaps = 3/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPA GV + I+E+++AG + F+V+ D D+ + VPV A +G+R++ Sbjct: 9 FKVGDKAVYPAQGVAEVVNIEEKDIAGNRQRFYVLRILDTDRKIM-VPVSNASAVGLRQV 67 Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R + W+RR + + KI +G + +AEV+RDL+R + + Sbjct: 68 ISEQEIREIFDILRERTIAFDNQTWNRRYRGFMDKIKTGSIYDVAEVLRDLYRLKTDKQL 127 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S+ ER++ ++A +V+EIA +E + IE Sbjct: 128 SFGERRMLDTARTLIVKEIAIARGQTEEQVKTEIE 162 >gi|315657561|ref|ZP_07910443.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492033|gb|EFU81642.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 160 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 81/148 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R + Sbjct: 3 FKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS S Sbjct: 63 DEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLSKARQILVSELALAEKTNEEDA 150 >gi|218898141|ref|YP_002446552.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|218543299|gb|ACK95693.1| transcriptional regulator, CarD family [Bacillus cereus G9842] Length = 153 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 62 DILALKHIIHIFQHEKSCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLNT 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 122 SEKKLLDDAYKFLVSELELIKGITE 146 >gi|228943459|ref|ZP_04105903.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976286|ref|ZP_04136757.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783390|gb|EEM31498.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816239|gb|EEM62420.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 158 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 82/145 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISKMQVMIPKGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A ++ E+ + I+E Sbjct: 127 SEKKLLDDAYKFLISELELIKGITE 151 >gi|72163306|ref|YP_290963.1| CarD family transcriptional regulator [Thermobifida fusca YX] gi|71917038|gb|AAZ56940.1| transcriptional regulator, CarD family [Thermobifida fusca YX] Length = 160 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 83/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + + V+ DK + ++VP A ++G+R + Sbjct: 3 FKVGDTVVYPHHGAARIEAIETRTIKGEEKTYLVLKVDKGDLTVRVPADNAEEVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A +E +A L++ Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLD 155 >gi|301167408|emb|CBW26990.1| putative transcriptional regulator [Bacteriovorax marinus SJ] Length = 176 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 3/143 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G++ V P HGVG + +I+E+EV G KL F++I + M + VP + G+R+L Sbjct: 21 FNIGDYAVCPGHGVGQVCDIEEKEVGGDKLSFYIIKIIANGMTVMVPTNS--ENGIRELV 78 Query: 74 EAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +L++ V + W+RR +EY KI +G L+ IA+V+R L ++ S Sbjct: 79 GNEEINEVYELLQDHDVEVDNSTWNRRYREYMTKIKTGSLLEIADVLRALFLLRAKKNLS 138 Query: 133 YSERQLYESALNRMVREIAAVNS 155 + E+++ E + + +EI+ N Sbjct: 139 FGEKKMLEQCRDLLAQEISLSNG 161 >gi|298345944|ref|YP_003718631.1| putative transcription factor CarD [Mobiluncus curtisii ATCC 43063] gi|304390353|ref|ZP_07372306.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654533|ref|ZP_07907439.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|298236005|gb|ADI67137.1| possible transcription factor CarD [Mobiluncus curtisii ATCC 43063] gi|304326109|gb|EFL93354.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490997|gb|EFU80616.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 160 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 81/148 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R + Sbjct: 3 FKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS S Sbjct: 63 DEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLTKARQILVSELALAEKTNEEDA 150 >gi|311114871|ref|YP_003986092.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946365|gb|ADP39069.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 235 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 2/159 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + EI E+ V G+ ++ ++ D + + VPV +G+R Sbjct: 39 GYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 98 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 99 IVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEHG 158 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S E+++ A + ++ EIA I E +A L+ VNL Sbjct: 159 LSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNL 197 >gi|228901595|ref|ZP_04065773.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228908832|ref|ZP_04072664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228850842|gb|EEM95664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228858007|gb|EEN02489.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|75760996|ref|ZP_00741000.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491513|gb|EAO54725.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R ++ Sbjct: 16 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 76 DILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLNT 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 136 SEKKLLDDAYKFLVSELELIKGITE 160 >gi|154487498|ref|ZP_02028905.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis L2-32] gi|154084016|gb|EDN83061.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis L2-32] Length = 198 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 2/165 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 S E+++ A + + EIA + E EA L++VNL ++ + Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLGYEAPR 166 >gi|308235377|ref|ZP_07666114.1| CarD-like protein [Gardnerella vaginalis ATCC 14018] Length = 198 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + EI E+ V G+ ++ ++ D + + VPV +G+R Sbjct: 2 GYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + ++ EIA I E +A L+ VNL Sbjct: 122 LSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNLG 161 >gi|89893187|ref|YP_516674.1| hypothetical protein DSY0441 [Desulfitobacterium hafniense Y51] gi|219666460|ref|YP_002456895.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332635|dbj|BAE82230.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536720|gb|ACL18459.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 158 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 78/137 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+EV G +++V+ M + +P+ +G+R + Sbjct: 2 FDIGDRVVYPMHGAGIIEAIEEREVLGESHQYYVMNIPVGNMKVYIPLKNVNQLGIRGVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V + LK++ ++ + W+RR + +I SGD+ ++AEVVR L + D + S Sbjct: 62 SSEEVPQVLKILENESTLPALAWNRRYRANMDRIKSGDIYSVAEVVRSLSQRDREKGLST 121 Query: 134 SERQLYESALNRMVREI 150 E+++Y++A +V E+ Sbjct: 122 GEKKMYDNAYQILVSEL 138 >gi|119025686|ref|YP_909531.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765270|dbj|BAF39449.1| possible transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 198 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + + EIA + E EA L++VNL Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLG 161 >gi|297243682|ref|ZP_06927613.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD] gi|296888433|gb|EFH27174.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD] Length = 208 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + EI E+ V G+ ++ ++ D + + VPV +G+R + Sbjct: 13 YQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRDI 72 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 73 VGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHGL 132 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + ++ EIA I E EA L++VNL K Sbjct: 133 SAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYK 173 >gi|283783080|ref|YP_003373834.1| CarD-like protein [Gardnerella vaginalis 409-05] gi|283440982|gb|ADB13448.1| CarD-like protein [Gardnerella vaginalis 409-05] Length = 198 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 2/164 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + EI E+ V G+ ++ ++ D + + VPV +G+R + Sbjct: 3 YQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 S E+++ A + ++ EIA I E EA L++VNL K + Sbjct: 123 SAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQ 166 >gi|302331432|gb|ADL21626.1| Transcriptional regulator [Corynebacterium pseudotuberculosis 1002] Length = 193 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 82/152 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 DDEGLQKVFGFLREIDVEEAGNWSRRFKANQGRLASGDVNKVAEVVRDLWRRDQGRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A +I E +A L+ Sbjct: 123 GEKRMLAKARQVLVGELALAENIDENKADELL 154 >gi|298253496|ref|ZP_06977286.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1] gi|297532263|gb|EFH71151.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1] Length = 215 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 2/164 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + EI E+ V G+ ++ ++ D + + VPV +G+R + Sbjct: 20 YQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRDI 79 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 80 VGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHGL 139 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 S E+++ A + ++ EIA I E EA L++VNL K + Sbjct: 140 SAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQ 183 >gi|206973195|ref|ZP_03234117.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|229191421|ref|ZP_04318406.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|206732079|gb|EDZ49279.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228592103|gb|EEK49937.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYRFLVSELELIKGITE 151 >gi|260892305|ref|YP_003238402.1| transcriptional regulator, CarD family [Ammonifex degensii KC4] gi|260864446|gb|ACX51552.1| transcriptional regulator, CarD family [Ammonifex degensii KC4] Length = 159 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 1/154 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+E+ G K E++V+ F + M + VP+ +IG+R++ Sbjct: 2 FKVGDKVVYPMHGAGIIEAIEEKEILGQKREYYVLRFPIGNNMKVMVPIDNCQEIGLRRV 61 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V+ LKL+R W+ R + KI SG++ A+AEVVR+L R + + S Sbjct: 62 IDKSEVQNVLKLLRSSCTAMPANWNHRYRANLEKIKSGNIYAVAEVVRNLARRERERGLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ E+A ++ E+ + E EA L++ Sbjct: 122 SGEKRMLENAKQILISELVLAMEMKEEEARQLLD 155 >gi|227876780|ref|ZP_03994889.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243] gi|269976308|ref|ZP_06183304.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1] gi|306817728|ref|ZP_07451470.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307701599|ref|ZP_07638616.1| CarD-like protein [Mobiluncus mulieris FB024-16] gi|227842677|gb|EEJ52877.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243] gi|269935637|gb|EEZ92175.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649542|gb|EFM46825.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307613278|gb|EFN92530.1| CarD-like protein [Mobiluncus mulieris FB024-16] Length = 160 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 85/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EI + + G++ E+ + + + +++P +G+R + Sbjct: 3 FTVGETVVYPHHGAAVIEEITTRVIGGVEREYLKLRVAQADLTIQIPSENVEMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E +++R + + WSRR + KI +GD++ +AEVVRDL R DS+ S Sbjct: 63 DKEGLEHVFEVLRTTKTEEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSKKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A N ++ L+S Sbjct: 123 GEKRMLSKARQILVSELALAEKTNEEDASNRLDEVLAS 160 >gi|23465567|ref|NP_696170.1| transcriptional regulator [Bifidobacterium longum NCC2705] gi|23326233|gb|AAN24806.1| possible transcriptional regulator [Bifidobacterium longum NCC2705] Length = 197 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R + Sbjct: 3 YKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + ++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VSASEVAKVFDILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS---SKSSKTEKSTSENQDKAA 188 S E+++ A + EIA I E EA L++VNL ++ + T+E ++ AA Sbjct: 123 SAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAAA 182 >gi|302544415|ref|ZP_07296757.1| CarD family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|307326973|ref|ZP_07606163.1| transcriptional regulator, CarD family [Streptomyces violaceusniger Tu 4113] gi|302462033|gb|EFL25126.1| CarD family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] gi|306887271|gb|EFN18267.1| transcriptional regulator, CarD family [Streptomyces violaceusniger Tu 4113] Length = 160 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A S +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAESTNEDKAEALLDEVLAS 160 >gi|227505965|ref|ZP_03936014.1| CarD family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197487|gb|EEI77535.1| CarD family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 195 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 82/153 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP +G+R + Sbjct: 3 FKVGEVVVYPHHGAARIADIEHREMGGETLEYLVLQINQSDLVVRVPSKNVELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFSVLREIDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A + + E +A ++E Sbjct: 123 GEKRMLAKARQILVGELALASPVDEKKADTMLE 155 >gi|46190223|ref|ZP_00121736.2| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bifidobacterium longum DJO10A] gi|189439614|ref|YP_001954695.1| transcriptional_regulator [Bifidobacterium longum DJO10A] gi|213692627|ref|YP_002323213.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546164|ref|ZP_03976213.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133013|ref|YP_004000352.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322688825|ref|YP_004208559.1| transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690813|ref|YP_004220383.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189428049|gb|ACD98197.1| Transcriptional_regulator [Bifidobacterium longum DJO10A] gi|213524088|gb|ACJ52835.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227213145|gb|EEI81017.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517113|emb|CBK70729.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. longum F8] gi|311774000|gb|ADQ03488.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320455669|dbj|BAJ66291.1| putative transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320458778|dbj|BAJ69399.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460161|dbj|BAJ70781.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] Length = 197 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R + Sbjct: 3 YKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + ++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS---SKSSKTEKSTSENQDKAA 188 S E+++ A + EIA I E EA L++VNL ++ + T+E ++ AA Sbjct: 123 SAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAAA 182 >gi|51246583|ref|YP_066467.1| transcription factor [Desulfotalea psychrophila LSv54] gi|50877620|emb|CAG37460.1| related to transcription factor [Desulfotalea psychrophila LSv54] Length = 165 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 1/146 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL- 72 F G+ VYPAHGVG I ++ Q VAG F+V+ + M + +P + +G+R + Sbjct: 8 FVAGDMAVYPAHGVGVIKSVETQTVAGTDQSFYVMEIMGNNMTIMIPTASSEKVGLRAIV 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 SE E L + W+RR ++Y KI +G + +A V+RDL + S Sbjct: 68 SEEQVSEVVTILEDRDVELGSQTWNRRYRDYMEKIKTGSVHEVAAVLRDLFLLSVDKDLS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISE 158 Y ER++ ++A +V+E++ I E Sbjct: 128 YGERKMLDTAKGLLVKELSLAKKIEE 153 >gi|296453869|ref|YP_003661012.1| CarD family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183300|gb|ADH00182.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. longum JDM301] Length = 197 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R + Sbjct: 3 YKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNARKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 A V + ++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS---SKSSKTEKSTSENQDKAA 188 S E+++ A + EIA I E EA L++VNL ++ + T+E ++ AA Sbjct: 123 SAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAAA 182 >gi|50955384|ref|YP_062672.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951866|gb|AAT89567.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 160 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 85/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATITEVKKRTIKGEEKLYLKLNVTQGDLTIEVPADNVDLVGVRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I ++EVVRDL R D S Sbjct: 63 GREGLDRVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A + +A +L++ L+S Sbjct: 123 GEKRMLAKARQILISELALAEKTDDEKASSLLDEVLAS 160 >gi|300859178|ref|YP_003784161.1| putative transcription factor [Corynebacterium pseudotuberculosis FRC41] gi|300686632|gb|ADK29554.1| putative transcription factor [Corynebacterium pseudotuberculosis FRC41] gi|302206868|gb|ADL11210.1| Transcriptional regulator [Corynebacterium pseudotuberculosis C231] gi|308277120|gb|ADO27019.1| Transcriptional regulator [Corynebacterium pseudotuberculosis I19] Length = 193 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 82/152 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 DDEGLQKVFGFLREIDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A +I E +A L+ Sbjct: 123 GEKRMLAKARQVLVGELALAENIDENKADELL 154 >gi|227834038|ref|YP_002835745.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] gi|262183476|ref|ZP_06042897.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] gi|227455054|gb|ACP33807.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] Length = 194 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 82/153 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG IT I+ +E+ G +LE+ V+ ++ + ++VP +G+R + Sbjct: 3 FKVGEVVVYPHHGAAKITAIETREMGGEELEYLVLQINQSDLVVRVPSKNVEMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFSVLREVDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E++ + E +A ++E Sbjct: 123 GEKRMLAKARQILVGELSLAKPVDEKKADTMME 155 >gi|228905766|ref|ZP_04069681.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228853883|gb|EEM98626.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + K+ +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYRFLVSELELIKGITE 151 >gi|300780458|ref|ZP_07090314.1| CarD family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534568|gb|EFK55627.1| CarD family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 197 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I +I+++E+ G L+F V+ + + ++VPV A +G+R + Sbjct: 3 FKVGEVVVYPHHGAARIADIEQREMGGETLDFLVLNILQSDLSVRVPVKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 NEDGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 E+++ A +V E+A I E +A ++ Sbjct: 123 GEKRMLGKARQILVGELALAEPIDEAKADDM 153 >gi|256824253|ref|YP_003148213.1| CarD family transcriptional regulator [Kytococcus sedentarius DSM 20547] gi|256687646|gb|ACV05448.1| transcriptional regulator, CarD family [Kytococcus sedentarius DSM 20547] Length = 160 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I E+K+++V G ++ + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAALIEEVKQRKVKGKEMTYLKLKVAQGDLTIEVPAENCDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +A +E+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + S Sbjct: 63 DAEGLEKVFGVLRAENCEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E A ++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEERAEATLDEVLAS 160 >gi|310826140|ref|YP_003958497.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737874|gb|ADO35534.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 157 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 85/153 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ IVYP HG G + +I+E+E+ ++++ + M + +PV KA ++G+R + Sbjct: 2 YEIGDKIVYPMHGAGVVKDIEEKEIFDTTQMYYLMEIVSEGMEILIPVDKADEVGVRDIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ L + + WS+R Q+ + SGD+ +A+VV++L D + S Sbjct: 62 TSDVIEKMLDSLEEPSDQMNGNWSKRYQDNMDILKSGDIFDVAKVVKNLTLLDRKKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ SA N ++ E+ V S+ E++ +IE Sbjct: 122 GEKKMLTSARNFLISEMVLVQGRSKEESLQVIE 154 >gi|228966014|ref|ZP_04127081.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228793684|gb|EEM41220.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] Length = 158 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + +V E+ + I+E Sbjct: 127 SEKKLLDDVYKFLVSELELIKGITE 151 >gi|75758584|ref|ZP_00738703.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493930|gb|EAO57027.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R + Sbjct: 16 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPVI 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + K+ +G++ AEVVRDL R + + Sbjct: 76 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKALNT 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 136 SEKKLLDDAYRFLVSELELIKGITE 160 >gi|158522831|ref|YP_001530701.1| CarD family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511657|gb|ABW68624.1| transcriptional regulator, CarD family [Desulfococcus oleovorans Hxd3] Length = 188 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ +VYPAHGVG I I+ + + + +F+++ + M + +P +G+R + Sbjct: 20 YQPGDLVVYPAHGVGRIETIESRNIGDTRQDFYIMKILETNMVIMIPTQNLTAVGIRNVI 79 Query: 74 EAHFVERALKLVRGKARV---KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 V + ++R + W+RR +EY KI +G L +AEV RDL + Sbjct: 80 CKKEVSKIYNIIRSQEECGAGDNQTWNRRYKEYMDKIKTGSLYEVAEVFRDLFLLKMTKD 139 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S+ ER+L ++A +V+E++ E I+ IE Sbjct: 140 LSFGERKLLDTAQGLLVKELSIAKGAEEKTVISEIE 175 >gi|319948870|ref|ZP_08022983.1| CarD family transcriptional regulator [Dietzia cinnamea P4] gi|319437472|gb|EFV92479.1| CarD family transcriptional regulator [Dietzia cinnamea P4] Length = 164 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 85/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG TI I+ + V G + E+ V+ + + +KVP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAATIQAIEMRTVRGTEKEYLVLKVSQGDLTVKVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ +++R + + T WSRR + K+ SGD+ +AEVVRDL R D S Sbjct: 63 DQAGLDKVFEVLRTEHAEEPTNWSRRYKANGEKLASGDVNKVAEVVRDLWRRDLDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A E A L++ L S + Sbjct: 123 GEKRMLAKARQVLVGELALAERSDEERADALLDEVLGSAA 162 >gi|311741767|ref|ZP_07715578.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314773|gb|EFQ84679.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 161 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 85/150 (56%), Gaps = 1/150 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I +I+ +++ G + ++ V+ ++ + ++VP +G+R Sbjct: 2 AFTVGETVVYPNHGAAVIEDIETRKIKGEERDYLVLRIIAQNDLVVRVPACNLDLVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A +ER ++R + + T WSRR + K++SGD++ +AEVVRDL R D + Sbjct: 62 VVDADGLERVFSVLRAEHVEEPTNWSRRYKANLEKLHSGDVLKVAEVVRDLWRRDHERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 S E+++ A +V E+A + +E +A Sbjct: 122 SAGEKRMLAKARQILVSELALAENTNEDKA 151 >gi|302379533|ref|ZP_07268018.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3] gi|302312440|gb|EFK94436.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3] Length = 160 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 83/148 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R ++ Sbjct: 2 FKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFVA 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E + +++ + + W++R +E K+ GD+ A V + L+ DS S Sbjct: 62 EEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAVVYKGLYELDSSKGLSM 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ ++ ++ EIA+ ++ EA Sbjct: 122 IEKKVLNTSRKMLISEIASGLNLKPSEA 149 >gi|271962514|ref|YP_003336710.1| carD family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505689|gb|ACZ83967.1| CarD family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 160 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 83/158 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R + Sbjct: 3 FQVGDTVVYPHHGAARIEAITTRTIKGEERTYLVLKVDKGDLTVQVPADNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER ++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLNS 160 >gi|333026128|ref|ZP_08454192.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071] gi|332745980|gb|EGJ76421.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIDAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|320009411|gb|ADW04261.1| transcriptional regulator, CarD family [Streptomyces flavogriseus ATCC 33331] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQEGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|302390636|ref|YP_003826457.1| transcriptional regulator, CarD family [Thermosediminibacter oceani DSM 16646] gi|302201264|gb|ADL08834.1| transcriptional regulator, CarD family [Thermosediminibacter oceani DSM 16646] Length = 158 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 87/153 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+E+ G K +++V+ M + +P+ +IG+R++ Sbjct: 2 FNIGDKVVYPMHGAGIIEAIEEKEILGEKQKYYVMRMPFGNMRVMIPINSVKEIGVRQIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ LK++RG+ W+ R + KI SG++ +AEVVR+L + + S Sbjct: 62 SDEEIDQVLKILRGEKSKMPANWNHRYRANMEKIKSGNIFQVAEVVRNLGLREKEKGLSA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER+++E+A +V EIA +I E A +IE Sbjct: 122 GERRMFENAKQILVSEIALSKNIDEKSAHEMIE 154 >gi|326203337|ref|ZP_08193202.1| transcriptional regulator, CarD family [Clostridium papyrosolvens DSM 2782] gi|325986595|gb|EGD47426.1| transcriptional regulator, CarD family [Clostridium papyrosolvens DSM 2782] Length = 159 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR--- 70 + G+ IVYP HG G I I+E+E+ G K ++V+ + + +P DIG+R Sbjct: 2 YNVGDKIVYPMHGAGVIESIEEKEILGKKCSYYVMKIPIGDLKVMIPTNNITDIGIRGVI 61 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 +SEA V LK G+ + W++R +E KI SGD+ +A+VVR L + + + Sbjct: 62 SVSEADNVFNFLK--DGQHEIPSN-WNKRYRENMVKIKSGDIFEVADVVRSLMQREKEKG 118 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEA 161 S ER++ SA ++ E+ V I++ E Sbjct: 119 LSTGERKMLSSAKQILISELVLVKGINQHEV 149 >gi|169824929|ref|YP_001692540.1| CarD family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831734|dbj|BAG08650.1| transcriptional regulator CarD family [Finegoldia magna ATCC 29328] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 83/148 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R ++ Sbjct: 2 FKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFVA 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E + +++ + + W++R +E K+ GD+ A V + L+ DS S Sbjct: 62 EEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAIVYKGLYELDSSKGLSM 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ ++ ++ EIA+ ++ EA Sbjct: 122 IEKKVLNTSRKMLISEIASGLNLKPSEA 149 >gi|89096669|ref|ZP_01169561.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL B-14911] gi|89088684|gb|EAR67793.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL B-14911] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 10 MRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 MR G F+ +++VYP HGVG I I+E+EV G K +++VI M + +P GK + Sbjct: 1 MRYGGDYLFQIDDNVVYPMHGVGIIKAIEEKEVLGEKQQYYVIKMLVGNMEVMIPAGKIV 60 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + G+R +++ +++ + + + + W +R + KI +G + EVVRDL R Sbjct: 61 NSGIRPVTDIIALKQLMNIFQNGETDRLLPWKQRFKVNTDKIKTGKIQECTEVVRDLMRM 120 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 + + SERQ+ +A ++ E+ + I+E Sbjct: 121 KKEKALNTSERQMLNNAHEILISELGLMKGITE 153 >gi|152964866|ref|YP_001360650.1| CarD family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151359383|gb|ABS02386.1| transcriptional regulator, CarD family [Kineococcus radiotolerans SRS30216] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 83/158 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + V+ + + ++VP +G+R + Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIKGEDKLYLVLKVAQGDLTIEVPADNVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R ++R + T WSRR + K+ SGD++ +AEVVRDL R D S Sbjct: 63 GREGLDRVFSVLRTPYAEEPTNWSRRYKANLEKLASGDVVKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A +L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAESLLDEVLAS 160 >gi|21222627|ref|NP_628406.1| transcriptional factor regulator [Streptomyces coelicolor A3(2)] gi|29830513|ref|NP_825147.1| CarD-like transcriptional regulator [Streptomyces avermitilis MA-4680] gi|182437804|ref|YP_001825523.1| putative CarD-like transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239930480|ref|ZP_04687433.1| putative CarD-like transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|239942338|ref|ZP_04694275.1| putative CarD-like transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988803|ref|ZP_04709467.1| putative CarD-like transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|254387144|ref|ZP_05002415.1| transcriptional factor regulator [Streptomyces sp. Mg1] gi|254388532|ref|ZP_05003766.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC 27064] gi|256786303|ref|ZP_05524734.1| putative CarD-like transcriptional regulator [Streptomyces lividans TK24] gi|282860513|ref|ZP_06269579.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE] gi|289770194|ref|ZP_06529572.1| transcriptional factor regulator [Streptomyces lividans TK24] gi|290959414|ref|YP_003490596.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|291438841|ref|ZP_06578231.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC 14672] gi|291445795|ref|ZP_06585185.1| transcriptional factor regulator [Streptomyces roseosporus NRRL 15998] gi|294630053|ref|ZP_06708613.1| CarD family transcriptional regulator [Streptomyces sp. e14] gi|294814053|ref|ZP_06772696.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus ATCC 27064] gi|295838029|ref|ZP_06824962.1| CarD family transcriptional regulator [Streptomyces sp. SPB74] gi|297193588|ref|ZP_06910986.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297200594|ref|ZP_06917991.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|302520127|ref|ZP_07272469.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302535866|ref|ZP_07288208.1| transcriptional regulator [Streptomyces sp. C] gi|302552344|ref|ZP_07304686.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302559957|ref|ZP_07312299.1| CarD family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|318058492|ref|ZP_07977215.1| transcriptional regulator [Streptomyces sp. SA3_actG] gi|318075598|ref|ZP_07982930.1| transcriptional regulator [Streptomyces sp. SA3_actF] gi|326442457|ref|ZP_08217191.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326778439|ref|ZP_08237704.1| transcriptional regulator, CarD family [Streptomyces cf. griseus XylebKG-1] gi|329936179|ref|ZP_08285972.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|7242753|emb|CAB77326.1| putative transcriptional factor regulator [Streptomyces coelicolor A3(2)] gi|29607625|dbj|BAC71682.1| putative CarD-like transcriptional regulator [Streptomyces avermitilis MA-4680] gi|178466320|dbj|BAG20840.1| putative CarD-like transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194345960|gb|EDX26926.1| transcriptional factor regulator [Streptomyces sp. Mg1] gi|197699155|gb|EDY46088.1| CarD family transcriptional regulator [Streptomyces sp. SPB74] gi|197702253|gb|EDY48065.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC 27064] gi|197709720|gb|EDY53754.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197718134|gb|EDY62042.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260648940|emb|CBG72054.1| putative transcriptional regulator [Streptomyces scabiei 87.22] gi|282564249|gb|EFB69785.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE] gi|289700393|gb|EFD67822.1| transcriptional factor regulator [Streptomyces lividans TK24] gi|291341736|gb|EFE68692.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC 14672] gi|291348742|gb|EFE75646.1| transcriptional factor regulator [Streptomyces roseosporus NRRL 15998] gi|292833386|gb|EFF91735.1| CarD family transcriptional regulator [Streptomyces sp. e14] gi|294326652|gb|EFG08295.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus ATCC 27064] gi|297158399|gb|ADI08111.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] gi|302429022|gb|EFL00838.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302444761|gb|EFL16577.1| transcriptional regulator [Streptomyces sp. C] gi|302469962|gb|EFL33055.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302477575|gb|EFL40668.1| CarD family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|315455531|emb|CBY85030.1| hypothetical protein [Streptomyces sp. ATCC 55098] gi|326658772|gb|EGE43618.1| transcriptional regulator, CarD family [Streptomyces cf. griseus XylebKG-1] gi|328884013|emb|CCA57252.1| CarD transcriptional regulator [Streptomyces venezuelae ATCC 10712] gi|329304289|gb|EGG48169.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 160 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|188584806|ref|YP_001916351.1| transcriptional regulator, CarD family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349493|gb|ACB83763.1| transcriptional regulator, CarD family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 161 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I ++E+EV G K ++++ M + +P + IG+R++ Sbjct: 2 FKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + V++ L +++ + W++R + KI SGD+ +AEV+R+L D + S Sbjct: 62 DKNSVKKVLAILKAEETNVNHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ E+A +V E+ I E +A +I L + S Sbjct: 122 GEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTTS 161 >gi|296118942|ref|ZP_06837515.1| transcriptional regulator, CarD family [Corynebacterium ammoniagenes DSM 20306] gi|295968040|gb|EFG81292.1| transcriptional regulator, CarD family [Corynebacterium ammoniagenes DSM 20306] Length = 195 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP +G+R + Sbjct: 3 FKVGEVVVYPHHGAAKIEAIEHREMGGEMLEYLVLQINQSDLVVRVPSKNVEQVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A + E +A +++ Sbjct: 123 GEKRMLAKARQILVGELALAQPVDEKKADTMMD 155 >gi|239981206|ref|ZP_04703730.1| putative CarD-like transcriptional regulator [Streptomyces albus J1074] gi|291453071|ref|ZP_06592461.1| transcriptional factor regulator [Streptomyces albus J1074] gi|291356020|gb|EFE82922.1| transcriptional factor regulator [Streptomyces albus J1074] Length = 160 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKNYLVLKVAQGDLTVRVPADNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIRVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A L++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|269124964|ref|YP_003298334.1| CarD family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309922|gb|ACY96296.1| transcriptional regulator, CarD family [Thermomonospora curvata DSM 43183] Length = 160 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 81/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I I+ + + G + V+ DK + ++VPV ++G+R + Sbjct: 3 FTVGDTVVYPHHGAARIEAIETRTIKGEDKTYLVLKVDKGDLTVRVPVENVEEVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLEKVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A +E +A L++ Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLD 155 >gi|320095399|ref|ZP_08027078.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977670|gb|EFW09334.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 171 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 77/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG TI EI + + G + + + ++ + ++VP +G+R + Sbjct: 3 FEIGQTVVYPHHGAATIEEITTRSIRGAEKTYLKLRVNQGDLTIEVPADNVDLVGVRDIV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S Sbjct: 63 DEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLST 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A + E+A I + +A Sbjct: 123 GEKRMLTKARGILTSELALARGIDKADA 150 >gi|220930938|ref|YP_002507846.1| transcriptional regulator, CarD family [Halothermothrix orenii H 168] gi|219992248|gb|ACL68851.1| transcriptional regulator, CarD family [Halothermothrix orenii H 168] Length = 176 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 81/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG GTI I+ + + G + +++++ M + +PV K +IG+R + Sbjct: 12 FKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEKVEEIGVRNII 71 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + LKL++G W+RR + K+ +GD+ + EVVR+L D + S Sbjct: 72 DEEEADNVLKLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLTIRDHEKGLST 131 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ +A ++ E+ + E E +I+ Sbjct: 132 GEKKMLSNARQILISELVLAKDMDEKEVEEIID 164 >gi|25029078|ref|NP_739132.1| putative transcription factor [Corynebacterium efficiens YS-314] gi|23494365|dbj|BAC19332.1| putative transcription factor [Corynebacterium efficiens YS-314] Length = 200 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+ Sbjct: 1 MGMDFKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGV 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 RDVVGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDR 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEA 161 S E+++ A +V E+A ++ E +A Sbjct: 121 GLSAGEKRMLAKARQVLVGELALAETVDEAKA 152 >gi|294786789|ref|ZP_06752043.1| transcriptional regulator, CarD family [Parascardovia denticolens F0305] gi|294485622|gb|EFG33256.1| transcriptional regulator, CarD family [Parascardovia denticolens F0305] Length = 230 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 4/179 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG I EI E+ + G+ ++ + D + + VP +G+R++ Sbjct: 3 YKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADAVDKVGVREV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-HRTDSQPEK 131 V + +++R ++T WSRR + KI +GD+ IAEVVRDL R D + Sbjct: 63 VNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A N + EIA I + EA L++VNL + + EK ++ ++AA Sbjct: 123 SAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHHAQAPEEAA 181 >gi|315226414|ref|ZP_07868202.1| CarD family transcriptional regulator [Parascardovia denticolens DSM 10105] gi|315120546|gb|EFT83678.1| CarD family transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 260 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 9/188 (4%) Query: 10 MRQG-----FRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFVIAFDKDKMCLKVPVGK 63 +R+G ++ G+ +VYP HG I EI E+ + G+ ++ + D + + VP Sbjct: 24 LREGCLYMEYKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADA 83 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL- 122 +G+R++ V + +++R ++T WSRR + KI +GD+ IAEVVRDL Sbjct: 84 VDKVGVREVVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLS 143 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKST 180 R D + S E+++ A N + EIA I + EA L++VNL + + EK Sbjct: 144 QRDDDEHGLSAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHH 203 Query: 181 SENQDKAA 188 ++ ++AA Sbjct: 204 AQAPEEAA 211 >gi|329946263|ref|ZP_08293857.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527555|gb|EGF54550.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 160 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + GE +VYP HG I +I++++V G + + + + + + VP IG+R + Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E EA + ++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEDEAESRLDEVLAS 160 >gi|325066494|ref|ZP_08125167.1| CarD family transcriptional regulator [Actinomyces oris K20] gi|326772504|ref|ZP_08231788.1| transcriptional regulator, CarD family [Actinomyces viscosus C505] gi|326637136|gb|EGE38038.1| transcriptional regulator, CarD family [Actinomyces viscosus C505] Length = 160 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + GE +VYP HG I +I++++V G + + + + + + VP IG+R + Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E EA + ++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160 >gi|163939058|ref|YP_001643942.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861255|gb|ABY42314.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] Length = 153 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 82/145 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ +++ + K W +R + KI +G++ AEVVRDL R + + Sbjct: 62 DILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAHEFLISELGLIKGITE 146 >gi|108760592|ref|YP_633761.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622] gi|1022328|emb|CAA91224.1| carD [Myxococcus xanthus] gi|108464472|gb|ABF89657.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622] Length = 316 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +VYP GV ++ I +EVAG KL F + ++D + VP GK + IG+RK++ A Sbjct: 13 GDRVVYPNQGVCRVSAIDVKEVAGQKLTFVTMRREEDGAVVMVPEGKVLAIGVRKVASAE 72 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 VE +R + W +RA+ ++ G ++ +AEVV+ L ER Sbjct: 73 DVEAIFTFLRSDSDKADLDWKQRARTNLDRMTQGGIMGLAEVVKGLQVLSELRPLPTKER 132 Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 +LY++A + +V E+AA +E A + I++ L + K T+ Sbjct: 133 ELYDNARHLLVTEVAAALGTAEVNAEDAIDIVLFPPGRERPKRTA 177 >gi|229132055|ref|ZP_04260918.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|228651455|gb|EEL07427.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] Length = 158 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 82/145 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ +++ + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITE 151 >gi|269217464|ref|ZP_06161318.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon 848 str. F0332] gi|269213085|gb|EEZ79425.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon 848 str. F0332] Length = 163 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 84/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + GE +VYP HG I ++ +++ G + + + + + ++VP D+G+R +S Sbjct: 3 YTIGETVVYPHHGAARIEDVFTRKIRGEEKTYLKLRVVQGDLEIQVPADMLEDVGVRDVS 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ ++R + + + WSRR + K+ SGD+I +AEVVRDL R D+ S Sbjct: 63 DDEQLKQVFTVLRAEQIEEPSNWSRRYKANSEKLTSGDVIKVAEVVRDLTRRDADRHLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A + E+A +SE EA+ L++ Sbjct: 123 GEKRMLSQARQILGSEVALARQVSEGEALELLD 155 >gi|283853058|ref|ZP_06370314.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B] gi|283571525|gb|EFC19529.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B] Length = 170 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 2 FSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPLC 61 Query: 74 EAHFVERALKLVRGKARVKRTM---WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A + ++ ++ ++ W+RR +EY K+ SGDL +A V+++L E Sbjct: 62 TAEEGQAIIETLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLGDVAYVLKELLLIGQNKE 121 Query: 131 KSYSERQLYESALNRMVREIA 151 S+ ER+L E A + + E+A Sbjct: 122 LSFGERRLLEQATSLLTLELA 142 >gi|297568584|ref|YP_003689928.1| transcriptional regulator, CarD family [Desulfurivibrio alkaliphilus AHT2] gi|296924499|gb|ADH85309.1| transcriptional regulator, CarD family [Desulfurivibrio alkaliphilus AHT2] Length = 165 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 1/154 (0%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A + FR G+ VYPAHGVG I I+ ++V ++ F+V+ F + M + +P +G Sbjct: 3 ATLEMFRVGDMAVYPAHGVGKIESIESRKVGELEQSFYVMRFIESNMTVMIPTTTCDTVG 62 Query: 69 MRKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 +R + A V++ ++ + + W++R +EY KI +G + IA V+RDL Sbjct: 63 LRNIISADDVQQVFAILNQRDVETESQPWNQRYREYTNKIKTGSIFEIAAVLRDLLLLRG 122 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 + S+ ER++ ++A +V+EIA I E + Sbjct: 123 DKDLSFGERKMVDTAKTLLVKEIALAKQIQEEQV 156 >gi|115372710|ref|ZP_01460016.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1] gi|115370191|gb|EAU69120.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1] Length = 361 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 2/176 (1%) Query: 7 RDAMRQGFR--TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 R M +G + G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K Sbjct: 33 RGDMPEGLQLSVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAKV 92 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 IG+RK++ VE+ +R + W +RA+ ++ G ++ +AEVV+ L Sbjct: 93 QAIGVRKVAGPAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQV 152 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 ER+LY++A + +V E+AA SI E A + I++ L + K T Sbjct: 153 LSELRPLPTKERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRT 208 >gi|332981599|ref|YP_004463040.1| CarD family transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699277|gb|AEE96218.1| transcriptional regulator, CarD family [Mahella australiensis 50-1 BON] Length = 162 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 1/154 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP HG G + I+E+E+ G+ +++++ + + +P+ A DIG+R + Sbjct: 2 LQIGDKVVYPMHGAGVVEAIEEKEILGVTQKYYILKLPVCDVKIMIPLSSADDIGIRHII 61 Query: 74 EAHFVERALK-LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +R L L + T W+RR + KI SGD+ +A+VVR L + Q S Sbjct: 62 DEDESKRVLAALSQNNQDGDNTNWNRRYRINMDKIKSGDIYEVADVVRSLMIREKQKGLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ SA +V E+A NS E LIE Sbjct: 122 AGERKMLNSAKQILVSELALANSTGTDEIERLIE 155 >gi|227547934|ref|ZP_03977983.1| CarD family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079945|gb|EEI17908.1| CarD family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 204 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 79/148 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I +I+E+E+ G L+F V+ + + ++VPV + +G+R + Sbjct: 3 FKVGEVVVYPHHGAARIADIEEREMGGETLDFLVLKILQSDLEVRVPVKNSELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 NEAGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A + E +A Sbjct: 123 GEKRMLGKARQILVGELALATPVDEAKA 150 >gi|239916921|ref|YP_002956479.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC 2665] gi|289706880|ref|ZP_06503221.1| CarD-like transcriptional regulator [Micrococcus luteus SK58] gi|239838128|gb|ACS29925.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC 2665] gi|289556430|gb|EFD49780.1| CarD-like transcriptional regulator [Micrococcus luteus SK58] Length = 160 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 79/148 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +A +E ++++R + + T WSRR + K+ SGD+ +AEVVRDL R D S Sbjct: 63 DAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++E EA Sbjct: 123 GEKRMLSKARQVLVSELALAKKVTEEEA 150 >gi|259505930|ref|ZP_05748832.1| transcription factor [Corynebacterium efficiens YS-314] gi|259166411|gb|EEW50965.1| transcription factor [Corynebacterium efficiens YS-314] Length = 198 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 81/148 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++ E +A Sbjct: 123 GEKRMLAKARQVLVGELALAETVDEAKA 150 >gi|291456490|ref|ZP_06595880.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM 20213] gi|291381767|gb|EFE89285.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM 20213] Length = 197 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R + Sbjct: 3 YQVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRDI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK- 131 V + +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 63 VSGSEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + EIA I E EA L++VNL Sbjct: 123 SAGEKRMLTKARAILTSEIALSEKIDETEAQRLLDVNLG 161 >gi|254234156|ref|ZP_04927480.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C] gi|124603824|gb|EAY61787.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C] Length = 174 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 92/173 (53%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 + + +R + + F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP Sbjct: 2 LAWSNERGSNQMIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVP 61 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 A +G+R + +++ +++R + T WSRR + K+ SGD+ +AEVVR Sbjct: 62 AENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVR 121 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 DL R D + S E+++ A +V E+A S + +A +++ L++ S Sbjct: 122 DLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 174 >gi|324327548|gb|ADY22808.1| transcriptional regulator, CarD family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 158 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|229162478|ref|ZP_04290439.1| Transcriptional regulator, CarD [Bacillus cereus R309803] gi|228620957|gb|EEK77822.1| Transcriptional regulator, CarD [Bacillus cereus R309803] Length = 158 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|42782726|ref|NP_979973.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987] gi|42738652|gb|AAS42581.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987] Length = 158 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 80/147 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E+AG K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGEKQQYYVIKMLGSNMELMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 SE+++ ++A ++ E+ + I+E + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQ 153 >gi|125975421|ref|YP_001039331.1| CarD family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005283|ref|ZP_05430249.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 2360] gi|281419382|ref|ZP_06250397.1| transcriptional regulator, CarD family [Clostridium thermocellum JW20] gi|125715646|gb|ABN54138.1| transcriptional regulator, CarD family [Clostridium thermocellum ATCC 27405] gi|255990719|gb|EEU00835.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 2360] gi|281407002|gb|EFB37265.1| transcriptional regulator, CarD family [Clostridium thermocellum JW20] gi|316939546|gb|ADU73580.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 1313] Length = 158 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 82/153 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ IVYP HG G I I+E+E+ G K ++V+ +M + +P+ IG+R++ Sbjct: 2 YNIGDKIVYPMHGAGVIESIEEREILGKKQSYYVVKIPIGEMKVLIPIKNVDGIGIREVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ +++ KA T W++R +E +KI SG++ +A+VVR L D S Sbjct: 62 SEEDADKVFLILKNKALPSNTNWNKRYRENMSKIKSGNIFEVADVVRCLMLRDKLKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ SA ++ E+ +++ E +I+ Sbjct: 122 GEKKMLNSAKQILISELVLAKNMNPMEIEGMID 154 >gi|323359180|ref|YP_004225576.1| CarD family transcriptional regulator [Microbacterium testaceum StLB037] gi|323275551|dbj|BAJ75696.1| transcriptional regulator, similar to M. xanthus CarD [Microbacterium testaceum StLB037] Length = 160 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TI E+KE+ + G ++ + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATIIEVKERVIKGETKKYLKLNVTQGDLVIEVPADNVDLVGVRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R ++R + T WSRR + K+ SGD+I ++EVVRDL R D S Sbjct: 63 GKEGLDRVFDVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E A +++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEDRASVVLDEVLAS 160 >gi|108801703|ref|YP_641900.1| CarD family transcriptional regulator [Mycobacterium sp. MCS] gi|119870854|ref|YP_940806.1| CarD family transcriptional regulator [Mycobacterium sp. KMS] gi|126437690|ref|YP_001073381.1| CarD family transcriptional regulator [Mycobacterium sp. JLS] gi|108772122|gb|ABG10844.1| transcriptional regulator, CarD family [Mycobacterium sp. MCS] gi|119696943|gb|ABL94016.1| transcriptional regulator, CarD family [Mycobacterium sp. KMS] gi|126237490|gb|ABO00891.1| transcriptional regulator, CarD family [Mycobacterium sp. JLS] Length = 162 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 87/160 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A ++ + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS 162 >gi|84498455|ref|ZP_00997225.1| transcriptional regulator, CarD-like regulator [Janibacter sp. HTCC2649] gi|84381198|gb|EAP97082.1| transcriptional regulator, CarD-like regulator [Janibacter sp. HTCC2649] Length = 160 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I EI ++ + G++ + + + + ++VP +G+R + Sbjct: 3 FKVGETVVYPHHGAARIEEINKRTIKGVERLYLKLKVAQGDLVIEVPAENCDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ +++R + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 63 DKAGLEKVFEVLRAPFAEEPTNWSRRFKANLEKLASGDVIKVAEVVRDLWRRDKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A +++ L+S Sbjct: 123 GEKRMLSKARQILVSELALAEKTDEEKAETILDEVLAS 160 >gi|229106940|ref|ZP_04237040.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229118992|ref|ZP_04248336.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228664467|gb|EEL19964.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228676495|gb|EEL31241.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] Length = 158 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIMHIFQHGESDKLLPWKQRYKVNTDKIKTGEIQDGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITE 151 >gi|328950177|ref|YP_004367512.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] gi|328450501|gb|AEB11402.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] Length = 163 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYPA G G I E+ E+EV G + +++V+ D + VPVG + G+R Sbjct: 2 FQVGDAVVYPAQGAGRIVEVVEREVMGSRKQYYVVQLLSDAARIMVPVGAVREAGLRPPL 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 A +ER + + + ++W R +E + SGD +A +V L+R D + Sbjct: 62 AAAELERLWQALAEDLPLP-SVWMPRYREEQRLLASGDPFKLAALVGTLYRRDQAKPLAS 120 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SER+LYE AL + E+A S+SE Sbjct: 121 SERRLYEDALTALASEVAL--SLSE 143 >gi|120406288|ref|YP_956117.1| CarD family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959106|gb|ABM16111.1| transcriptional regulator, CarD family [Mycobacterium vanbaalenii PYR-1] Length = 162 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVSQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162 >gi|313902845|ref|ZP_07836242.1| transcriptional regulator, CarD family [Thermaerobacter subterraneus DSM 13965] gi|313466965|gb|EFR62482.1| transcriptional regulator, CarD family [Thermaerobacter subterraneus DSM 13965] Length = 166 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G + ++++ M L +P A G+R + Sbjct: 2 FQVGDRVVYPMHGAGVIEAIEEREVLGERHRYYILRLPVGDMRLMIPTASAPQSGLRPVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 A V L+ + + W+ R +E+ K+ SGD++ +A VVR+L S Sbjct: 62 PADQVPAVLEALCEPVPPLDSNWNHRYREHADKLRSGDILEVAVVVRNLSARQKARGLSG 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 ER+L + A +V E+A + EA L+E +L + Sbjct: 122 GERRLLDQARQILVSELALAGGMGRDEADALVERHLGA 159 >gi|258404969|ref|YP_003197711.1| transcriptional regulator, CarD family [Desulfohalobium retbaense DSM 5692] gi|257797196|gb|ACV68133.1| transcriptional regulator, CarD family [Desulfohalobium retbaense DSM 5692] Length = 174 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + I+ QE+ G + +F+++ + + L VPV A ++G+R + Sbjct: 2 FSEKQLVVYPAQGVGEVERIESQEIGGTRADFYIVRILSNNVTLMVPVANAENVGLRSVC 61 Query: 74 ---EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 E V LK W+RR +EY K+ SG+L ++ V+++L E Sbjct: 62 GADEGRLVLEGLKDRSDFMGYSGQNWNRRYREYSEKLKSGELDDVSYVLKELILIGRDKE 121 Query: 131 KSYSERQLYESALNRMVREIA 151 S+ ER+L E A+ + EIA Sbjct: 122 LSFGERRLLEQAMTLITMEIA 142 >gi|227496787|ref|ZP_03927058.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434] gi|226833703|gb|EEH66086.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434] Length = 164 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 74/137 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I +I++++V G + + + + + + VP IG+R + Sbjct: 3 FEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVDYIGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +A +E+ ++R + T WSRR + KI SGD+I +AEVVRDL R D+ S Sbjct: 63 DAAGLEKVFDVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122 Query: 134 SERQLYESALNRMVREI 150 E+++ A +V E+ Sbjct: 123 GEKRMLSKARQILVSEL 139 >gi|212703168|ref|ZP_03311296.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098] gi|212673434|gb|EEB33917.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098] Length = 172 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL- 72 F + + +VYPA GVG I I Q + G +F+++ + + L VPV A ++G+R L Sbjct: 2 FTSEQLVVYPAQGVGQIERIDSQNIGGSACDFYIVRIRANSITLMVPVKNASNVGLRTLV 61 Query: 73 --SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 EA + AL+ + W+RR +EY ++ S DL +A V+R+L + Sbjct: 62 STKEAEHIWEALRNNPQQTVHTGQNWNRRFREYSERLKSPDLSIVANVLRELLLIGRTKD 121 Query: 131 KSYSERQLYESALNRMVREIAAV 153 S+ ER+L E A++ + E+ V Sbjct: 122 LSFGERRLLEQAMSLVTGELGEV 144 >gi|51894260|ref|YP_076951.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857949|dbj|BAD42107.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 159 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 82/153 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+++EV G + ++V+ M + VP G+R + Sbjct: 2 FQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAVM 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ L+++R + W+ R + KI SGD++A+AEVVR L + + + S Sbjct: 62 SEQVFQQVLEVLRSRPTQAEKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ +SA ++ EI + + +A +L++ Sbjct: 122 GERKMLDSARQILLSEIVLIRGLELEQASSLLD 154 >gi|300934651|ref|ZP_07149907.1| putative transcription factor [Corynebacterium resistens DSM 45100] Length = 199 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E G K+++ V+ ++ + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAVIEGIEQREFKGEKVDYLVLRINQGDLSVRVPAANAEKVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A + + + L+E Sbjct: 123 GEKRMLAKARQILVGELALAEGVDDKKTDALLE 155 >gi|228922354|ref|ZP_04085661.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837409|gb|EEM82743.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 158 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|310823503|ref|YP_003955861.1| transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1] gi|27651196|emb|CAD60088.1| HMGA-type transcription factor [Stigmatella aurantiaca DW4/3-1] gi|309396575|gb|ADO74034.1| Transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1] Length = 305 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 2/173 (1%) Query: 10 MRQGFR--TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 M +G + G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K I Sbjct: 1 MPEGLQLSVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAKVQAI 60 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 G+RK++ VE+ +R + W +RA+ ++ G ++ +AEVV+ L Sbjct: 61 GVRKVAGPAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQVLSE 120 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 ER+LY++A + +V E+AA SI E A + I++ L + K T Sbjct: 121 LRPLPTKERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRT 173 >gi|258591297|emb|CBE67594.1| CarD-like transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 162 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 +RTG +VYP HGVG I I+ +EV G F+V+ + M + VP A +G+R++ Sbjct: 3 YRTGTKVVYPTHGVGWIEAIENKEVGGGPQAFYVVRIIGNGMTILVPTKNAKRVGLREVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 EA + + L +++ + W+RR ++ +I +G L +A V+R L + S+ Sbjct: 63 EASEIPKILAILKKNDLEISSNWNRRFKDNLERIRTGSLFEVALVLRKLVLLQKERSLSF 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+ + E+ +V EI+ + I + A L+E Sbjct: 123 GEKTMLENVRRLIVSEISHASGIDQERAKVLVE 155 >gi|78357172|ref|YP_388621.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219577|gb|ABB38926.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 171 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + ++ Q V G + EF+++ + + L VPV A+++G+R L Sbjct: 2 FVPDQLVVYPAQGVGKVERLESQVVGGAEAEFYIVRILSNNVTLMVPVKNAVNVGLRALC 61 Query: 74 EAHFVERALKLVRGKARVKRTM---WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A ++ L ++ ++ W+RR +EY K+ SG L +A V+++L E Sbjct: 62 SAEEGQKILDSLQDRSDFTGYTGQNWNRRYREYSEKLKSGSLEDVAYVLKELLLIGKDKE 121 Query: 131 KSYSERQLYESALNRMVREIA 151 S+ ER+L E ++ + E+A Sbjct: 122 LSFGERRLLEQSMGLITLELA 142 >gi|325474975|gb|EGC78161.1| transcriptional regulator [Treponema denticola F0402] Length = 209 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 79/165 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G+R++ Sbjct: 7 FSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLGIRRIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E ALK + W R Q SG ++ VVR L++ E Sbjct: 67 TKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKTKELPI 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 ER+LY+SA EIAA +++ E I ++L EK Sbjct: 127 QERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171 >gi|42527792|ref|NP_972890.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] gi|41818620|gb|AAS12809.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 208 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 79/165 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G+R++ Sbjct: 7 FSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLGIRRIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E ALK + W R Q SG ++ VVR L++ E Sbjct: 67 TKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKTKELPI 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 ER+LY+SA EIAA +++ E I ++L EK Sbjct: 127 QERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171 >gi|269957734|ref|YP_003327523.1| CarD family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306415|gb|ACZ31965.1| transcriptional regulator, CarD family [Xylanimonas cellulosilytica DSM 15894] Length = 160 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 83/158 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAALIEEIKVRTIRGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S Sbjct: 63 DQQGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A +++ L+S Sbjct: 123 GEKRMLSKARQILVSELALAEHTEEDKAEAILDEVLAS 160 >gi|295694809|ref|YP_003588047.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912] gi|295410411|gb|ADG04903.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912] Length = 165 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 75/137 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+EV G ++++ + + VP+ + +G+R++ Sbjct: 2 FNVGDRVVYPMHGAGVIESIEEREVLGKTGRYYIMRMPVGDIKVMVPIEQTGAVGLREVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +A V + L ++ + + W+RR ++ KI SGD AIA+VVR L D S Sbjct: 62 DAEGVHKILDILFDEGTQETAAWNRRYRDNMDKIKSGDAFAIADVVRQLAWLDRHKGLST 121 Query: 134 SERQLYESALNRMVREI 150 E+++YE A ++ E+ Sbjct: 122 GEKRMYEMARQILLSEL 138 >gi|163941254|ref|YP_001646138.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229012829|ref|ZP_04169997.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|229061220|ref|ZP_04198570.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|229134451|ref|ZP_04263264.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|229168365|ref|ZP_04296090.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|163863451|gb|ABY44510.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] gi|228615191|gb|EEK72291.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228649072|gb|EEL05094.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|228718091|gb|EEL69731.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228748431|gb|EEL98288.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 158 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKRQYYVIKMSASNMEVMIPMGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALTNIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|240172169|ref|ZP_04750828.1| transcriptional regulator, CarD family protein [Mycobacterium kansasii ATCC 12478] gi|296166638|ref|ZP_06849065.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898010|gb|EFG77589.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A S + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|145222036|ref|YP_001132714.1| CarD family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446222|ref|YP_004079101.1| CarD family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214522|gb|ABP43926.1| transcriptional regulator, CarD family [Mycobacterium gilvum PYR-GCK] gi|315264525|gb|ADU01267.1| transcriptional regulator, CarD family [Mycobacterium sp. Spyr1] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162 >gi|320532511|ref|ZP_08033328.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171 str. F0337] gi|320135273|gb|EFW27404.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171 str. F0337] Length = 160 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 83/158 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + GE +VYP HG I +I++++V G + + + + + + VP IG+R + Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLPA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E EA + ++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160 >gi|303234185|ref|ZP_07320831.1| CarD-like protein [Finegoldia magna BVS033A4] gi|302494726|gb|EFL54486.1| CarD-like protein [Finegoldia magna BVS033A4] Length = 160 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 82/148 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R ++ Sbjct: 2 FKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFVA 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E + +++ + + W++R + K+ GD+ A V + L+ DS S Sbjct: 62 EEEIIHSLRDILKNQEVDFPSNWNQRYKGNLEKLRIGDIKETAVVYKGLYELDSSKGLSM 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ ++ ++ EIA+ ++ EA Sbjct: 122 IEKKVLNTSRKMLISEIASGLNLKPSEA 149 >gi|229018847|ref|ZP_04175694.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] gi|229025088|ref|ZP_04181515.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228736198|gb|EEL86766.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228742468|gb|EEL92621.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] Length = 158 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPMGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 TLKALTHIIDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|294790738|ref|ZP_06755896.1| transcriptional regulator, CarD family [Scardovia inopinata F0304] gi|294458635|gb|EFG26988.1| transcriptional regulator, CarD family [Scardovia inopinata F0304] Length = 219 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG I EI E+ + G+ + + D + + VP +G+R++ Sbjct: 3 YKVGDTVVYPRHGAARIEEISERTLRGVTRTYLRLTVLSSDGLEISVPADSVEKVGVREI 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-HRTDSQPEK 131 V + +++R ++T WSRR + KI +GD+ IAEVVRDL R D Sbjct: 63 VNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDDHGL 122 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + EIA I + EA L++VNL Sbjct: 123 SAGEKRMLSKARGILTSEIALSEGIDDDEAQRLLDVNLG 161 >gi|326941362|gb|AEA17258.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 153 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R ++ Sbjct: 2 FQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 62 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAYEFLISELGLIEGITE 146 >gi|229002840|ref|ZP_04160720.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|228758404|gb|EEM07571.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] Length = 158 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ E+A ++ E+ + I+E Sbjct: 127 SEKKMLENAHEFLISELGLIKGITE 151 >gi|170783048|ref|YP_001711382.1| putative transcription factor regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157618|emb|CAQ02816.1| putative transcription factor regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 160 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 83/158 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TI E+K++ + G++ + + ++ + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATIIEVKKRVIRGVEKLYLKLDVNQGGLQIEVPAENVDMVGVRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + S Sbjct: 63 GREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+ + + A +V E+A E A L++ L+S Sbjct: 123 GEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160 >gi|291297677|ref|YP_003508955.1| CarD family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566897|gb|ADD39862.1| transcriptional regulator, CarD family [Stackebrandtia nassauensis DSM 44728] Length = 161 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 84/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I ++ + + G++ E+ V+ ++ + ++VP G +G+R++ Sbjct: 3 FSVGETVVYPHHGAALIEAVETRTIKGVEQEYLVLRVEQGDLTVRVPAGNVELVGVREVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 A + ++R + T WSRR + K+ SG+ + +AEVVRDL R D + S Sbjct: 63 GAEGLTEVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRDRERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A + +V E+A + ++ +A L++ Sbjct: 123 GEKRMLTKARDILVGEVALAEASTKDDAEVLLD 155 >gi|229007995|ref|ZP_04165557.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228753269|gb|EEM02745.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] Length = 167 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R ++ Sbjct: 16 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 76 DILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ E+A ++ E+ + I+E Sbjct: 136 SEKKMLENAHEFLISELGLIKGITE 160 >gi|228940730|ref|ZP_04103293.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973650|ref|ZP_04134232.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980206|ref|ZP_04140520.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228779564|gb|EEM27817.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228786111|gb|EEM34108.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818974|gb|EEM65036.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 158 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|224992000|ref|YP_002646689.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo 172] gi|224775115|dbj|BAH27921.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo 172] Length = 162 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPRHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A S + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|15610719|ref|NP_218100.1| transcription factor [Mycobacterium tuberculosis H37Rv] gi|15843196|ref|NP_338233.1| hypothetical protein MT3689 [Mycobacterium tuberculosis CDC1551] gi|31794760|ref|NP_857253.1| putative transcription factor [Mycobacterium bovis AF2122/97] gi|41406573|ref|NP_959409.1| hypothetical protein MAP0475 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464023|ref|YP_879850.1| CarD family transcriptional regulator [Mycobacterium avium 104] gi|118619338|ref|YP_907670.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|121639503|ref|YP_979727.1| putative transcription factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663447|ref|YP_001284970.1| putative transcription factor [Mycobacterium tuberculosis H37Ra] gi|148824789|ref|YP_001289543.1| transcription factor [Mycobacterium tuberculosis F11] gi|167967112|ref|ZP_02549389.1| hypothetical transcription factor [Mycobacterium tuberculosis H37Ra] gi|183985051|ref|YP_001853342.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|215405632|ref|ZP_03417813.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|215413503|ref|ZP_03422180.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|215429084|ref|ZP_03427003.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] gi|215432556|ref|ZP_03430475.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|215447917|ref|ZP_03434669.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|218755367|ref|ZP_03534163.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|219559660|ref|ZP_03538736.1| transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|253800624|ref|YP_003033625.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254366146|ref|ZP_04982190.1| hypothetical transcription factor [Mycobacterium tuberculosis str. Haarlem] gi|254552692|ref|ZP_05143139.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|254773528|ref|ZP_05215044.1| transcriptional regulatory protein [Mycobacterium avium subsp. avium ATCC 25291] gi|254822710|ref|ZP_05227711.1| transcriptional regulatory protein [Mycobacterium intracellulare ATCC 13950] gi|260184500|ref|ZP_05761974.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260198625|ref|ZP_05766116.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260202771|ref|ZP_05770262.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441013|ref|ZP_06430757.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289445177|ref|ZP_06434921.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555847|ref|ZP_06445057.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289571825|ref|ZP_06452052.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289572236|ref|ZP_06452463.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289747420|ref|ZP_06506798.1| transcription factor [Mycobacterium tuberculosis 02_1987] gi|289752298|ref|ZP_06511676.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289755712|ref|ZP_06515090.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289759741|ref|ZP_06519119.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289763762|ref|ZP_06523140.1| transcription factor [Mycobacterium tuberculosis GM 1503] gi|294993703|ref|ZP_06799394.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297636258|ref|ZP_06954038.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297733251|ref|ZP_06962369.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298527062|ref|ZP_07014471.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|306777937|ref|ZP_07416274.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306778466|ref|ZP_07416803.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306786490|ref|ZP_07424812.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306790855|ref|ZP_07429177.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306791178|ref|ZP_07429480.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306795963|ref|ZP_07434265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306801211|ref|ZP_07437879.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306805423|ref|ZP_07442091.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306969715|ref|ZP_07482376.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306974055|ref|ZP_07486716.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307081764|ref|ZP_07490934.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307086380|ref|ZP_07495493.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313660581|ref|ZP_07817461.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|3261556|emb|CAA17859.1| POSSIBLE TRANSCRIPTION FACTOR [Mycobacterium tuberculosis H37Rv] gi|13883549|gb|AAK48047.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31620357|emb|CAD95800.1| PUTATIVE TRANSCRIPTION FACTOR [Mycobacterium bovis AF2122/97] gi|41394922|gb|AAS02792.1| hypothetical protein MAP_0475 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165310|gb|ABK66207.1| transcriptional regulator, CarD family protein [Mycobacterium avium 104] gi|118571448|gb|ABL06199.1| conserved transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|121495151|emb|CAL73637.1| Putative transcription factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151658|gb|EBA43703.1| hypothetical transcription factor [Mycobacterium tuberculosis str. Haarlem] gi|148507599|gb|ABQ75408.1| putative transcription factor [Mycobacterium tuberculosis H37Ra] gi|148723316|gb|ABR07941.1| hypothetical transcription factor [Mycobacterium tuberculosis F11] gi|183178377|gb|ACC43487.1| conserved transcriptional regulatory protein [Mycobacterium marinum M] gi|253322127|gb|ACT26730.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289413932|gb|EFD11172.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289418135|gb|EFD15336.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289440479|gb|EFD22972.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289536667|gb|EFD41245.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289545579|gb|EFD49227.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289687948|gb|EFD55436.1| transcription factor [Mycobacterium tuberculosis 02_1987] gi|289692885|gb|EFD60314.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289696299|gb|EFD63728.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289711268|gb|EFD75284.1| transcription factor [Mycobacterium tuberculosis GM 1503] gi|289715305|gb|EFD79317.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298496856|gb|EFI32150.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|308213809|gb|EFO73208.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308328563|gb|EFP17414.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308328978|gb|EFP17829.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308332800|gb|EFP21651.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308340291|gb|EFP29142.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343630|gb|EFP32481.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308348097|gb|EFP36948.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308352020|gb|EFP40871.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308352807|gb|EFP41658.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308356657|gb|EFP45508.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308360612|gb|EFP49463.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308364200|gb|EFP53051.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323717777|gb|EGB26975.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326905422|gb|EGE52355.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328460355|gb|AEB05778.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 162 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A S + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|288556410|ref|YP_003428345.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547570|gb|ADC51453.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] Length = 158 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGKKQQYYVIKMSIGNMQVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + W +R + KI +G L AEVVRDL + + + Sbjct: 67 DIIALKNIIHIFQHGESDSLLSWKQRYKVNTDKIKTGKLQECAEVVRDLMQMKKEKTLNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGFIKGITE 151 >gi|228992334|ref|ZP_04152265.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228767359|gb|EEM15991.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 158 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALTRIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITE 151 >gi|229191731|ref|ZP_04318708.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228591725|gb|EEK49567.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPTGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|284989246|ref|YP_003407800.1| CarD family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062491|gb|ADB73429.1| transcriptional regulator, CarD family [Geodermatophilus obscurus DSM 43160] Length = 160 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R + Sbjct: 2 GFTVGETVVYPHHGAALIEAIETRVIKGEERAYLVLKVAQGDLTVRVPADNAEIVGVRDV 61 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + R +++R + T WSRR + K+ SGD+ +AEVVRDL R D S Sbjct: 62 VGQDGLNRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKDRGLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A L++ L+S Sbjct: 122 AGEKRMLSKARQILVSELALAEGTNEDKAEVLLDEVLAS 160 >gi|118470459|ref|YP_890299.1| CarD family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171746|gb|ABK72642.1| transcriptional regulator, CarD family protein [Mycobacterium smegmatis str. MC2 155] Length = 162 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKAETILDEVLAAAS 162 >gi|303246473|ref|ZP_07332752.1| transcriptional regulator, CarD family [Desulfovibrio fructosovorans JJ] gi|302492183|gb|EFL52058.1| transcriptional regulator, CarD family [Desulfovibrio fructosovorans JJ] Length = 170 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 2 FSEEQLVVYPAQGVGRVERIETQVIGGTSADFFIVRILSNNVTLMVPVANAENVGLRPLC 61 Query: 74 EAHFVERALKLVRG-KARVKRT-----MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 A E L ++ K R T W+RR +EY K+ SGDL +A V+++L Sbjct: 62 TA---EEGLAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQ 118 Query: 128 QPEKSYSERQLYESA 142 E S+ ER+L E A Sbjct: 119 NKELSFGERRLLEQA 133 >gi|30021746|ref|NP_833377.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969394|ref|ZP_03230349.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|218230882|ref|YP_002368460.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228953921|ref|ZP_04115959.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959831|ref|ZP_04121505.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047328|ref|ZP_04192927.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|229071154|ref|ZP_04204380.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|229080862|ref|ZP_04213379.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|229111070|ref|ZP_04240629.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|229128920|ref|ZP_04257896.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|229146213|ref|ZP_04274588.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|229151843|ref|ZP_04280042.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|229179932|ref|ZP_04307278.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|296504148|ref|YP_003665848.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171] gi|29897301|gb|AAP10578.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|206736435|gb|EDZ53593.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|218158839|gb|ACK58831.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228603613|gb|EEK61088.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|228631656|gb|EEK88286.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|228637272|gb|EEK93727.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|228654625|gb|EEL10487.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|228672433|gb|EEL27718.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|228702440|gb|EEL54909.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228712094|gb|EEL64043.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228724070|gb|EEL75416.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|228799825|gb|EEM46768.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805741|gb|EEM52322.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|296325200|gb|ADH08128.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171] Length = 158 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|315186624|gb|EFU20383.1| transcriptional regulator, CarD family [Spirochaeta thermophila DSM 6578] Length = 218 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 72/144 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ +H+VYP GVG + I+E+E G L ++VI M + VPV KA +IG+R + Sbjct: 14 FKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVPVHKAAEIGIRPIV 73 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 AL + + T W R Q + G ++ IA VVR L+ E Sbjct: 74 SREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVRALYYRSKIKELPI 133 Query: 134 SERQLYESALNRMVREIAAVNSIS 157 ER+L+++AL +V EI+ IS Sbjct: 134 LERKLFDNALRILVDEISFALEIS 157 >gi|227824939|ref|ZP_03989771.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226905438|gb|EEH91356.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 162 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 4/152 (2%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F G+ ++YP HG I +++++ + G ++++FV M + VP G +G+ Sbjct: 1 MAYMFTVGDKVLYPMHGAAVIRDVEQKVIDGRQIDYFVFDMLLSNMKVMVPAGNVEKVGI 60 Query: 70 RKLSEAHF---VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 R + + VE LK R + R+KR W+RR Y K+ +G + +A+VVR L + Sbjct: 61 RPIVDKSVMPKVEEVLK-ARPENRMKRITWNRRYNMYIDKMKTGSIFEVADVVRTLAVQE 119 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISE 158 + S ER+L +A ++ E+ V S+ E Sbjct: 120 EDKKLSTGERRLLSTAKQILLSEVMLVESVDE 151 >gi|126650362|ref|ZP_01722590.1| transcriptional regulator, CarD family protein [Bacillus sp. B14905] gi|126593012|gb|EAZ86994.1| transcriptional regulator, CarD family protein [Bacillus sp. B14905] Length = 158 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 79/144 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G++IVYP HGVG I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FEIGDNIVYPMHGVGIIKAIEEKEISGEKQQYYVIKMLIGNMQIMIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KIN+G + EVVRDL R + + Sbjct: 67 DIIALKHIINIFQHGESDRLLPWKQRYKVNTDKINTGKIQECTEVVRDLIRMKKEQGLNS 126 Query: 134 SERQLYESALNRMVREIAAVNSIS 157 SE+++ ++A ++ E+ + I+ Sbjct: 127 SEKKMLDNAHEFLISELVLIKGIT 150 >gi|52142365|ref|YP_084467.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|51975834|gb|AAU17384.1| possible transcriptional regulator, CarD family [Bacillus cereus E33L] Length = 158 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|297587316|ref|ZP_06945961.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575297|gb|EFH94016.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 160 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 78/139 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G ITE++ +EV G+K +++++ +M + +PV K D+G+R ++ Sbjct: 2 FKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYYILQMPMGEMKISIPVDKINDMGIRFVA 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +++ + W++R +E K+ +GD+ A V + L+ D S Sbjct: 62 QEEIIHSLRDILKNSEVDFPSNWNKRYKENLEKLRTGDIKETAIVYKGLYELDCSKGLSM 121 Query: 134 SERQLYESALNRMVREIAA 152 E+++ ++ ++ EIA+ Sbjct: 122 IEKKVLNTSRKMLISEIAS 140 >gi|307719573|ref|YP_003875105.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306533298|gb|ADN02832.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 217 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ +H+VYP GVG + I+E+E G L ++VI M + VPV KA +IG+R + Sbjct: 14 FKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVPVHKAAEIGIRPIV 73 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 AL + + T W R Q + G ++ IA VVR L+ E Sbjct: 74 SREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVRALYYRSKIKELPI 133 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 ER+L+++AL +V EI+ IS E Sbjct: 134 LERKLFDNALRILVDEISFALEISAKEV 161 >gi|229031301|ref|ZP_04187307.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228730059|gb|EEL81033.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] Length = 158 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 79/147 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILNIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 SE+++ ++A ++ E+ + I+E + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQ 153 >gi|229015358|ref|ZP_04172376.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|228745937|gb|EEL95922.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 158 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 81/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLIRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITE 151 >gi|296138335|ref|YP_003645578.1| transcriptional regulator, CarD family [Tsukamurella paurometabola DSM 20162] gi|296026469|gb|ADG77239.1| transcriptional regulator, CarD family [Tsukamurella paurometabola DSM 20162] Length = 162 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 86/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + +KVP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIEIKTIGGREREYLVLKVAQGDLTVKVPAENAEVVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + + +A +L++ L++ S Sbjct: 123 GEKRMLTKARQILVGELALAEATDDGKAESLLDEALAAAS 162 >gi|304439404|ref|ZP_07399316.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372186|gb|EFM25780.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 160 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP HG G I +I+++E+ G ++++ +M + VPV +A +IG+R + Sbjct: 2 YSIGDKVVYPMHGAGVIVDIEKKEILGEIRNYYILKMPIQEMKVMVPVEQAEEIGVRPIY 61 Query: 74 EAHFVERALKLVRGKARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ L+ ++ ++ + W+RR + KI +GD++ IA+VVR L R D++ S Sbjct: 62 GTEEMKEVLETLQSDKKLDMPSNWNRRFRFSTEKIKTGDIVEIAKVVRCLVRMDNEKNLS 121 Query: 133 YSERQLYESALNRMVREIAAV 153 ER+L +A +V E+A + Sbjct: 122 TGERKLLNNAKKIIVSEMALI 142 >gi|269796457|ref|YP_003315912.1| CarD family transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269098642|gb|ACZ23078.1| transcriptional regulator, CarD family [Sanguibacter keddieii DSM 10542] Length = 160 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + ++VP +G+R + Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIRGEDKLYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDADRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A +++ L+S Sbjct: 123 GEKRMLARARQILVSELALAEHTEEEKAEAILDEVLAS 160 >gi|229075538|ref|ZP_04208525.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229098087|ref|ZP_04229035.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|229104182|ref|ZP_04234854.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229117105|ref|ZP_04246484.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228666273|gb|EEL21736.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228679199|gb|EEL33404.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|228685278|gb|EEL39208.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228707517|gb|EEL59703.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] Length = 158 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI + M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSANNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|317126037|ref|YP_004100149.1| CarD family transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590125|gb|ADU49422.1| transcriptional regulator, CarD family [Intrasporangium calvum DSM 43043] Length = 160 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I EI + + G + + + + ++VP +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEEINTRTIKGEDKLYLKLKVAQGDLTIEVPAENCDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A ++++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEDKAESILDEVLAS 160 >gi|88855757|ref|ZP_01130420.1| transcriptional regulator, CarD-like regulator [marine actinobacterium PHSC20C1] gi|88815081|gb|EAR24940.1| transcriptional regulator, CarD-like regulator [marine actinobacterium PHSC20C1] Length = 160 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATITEVKKRTIKGEEKIYLKLNVTQGDLTIEVPAENVDLVGVRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+I ++EVVRDL R D S Sbjct: 63 GREGLDQVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A E +A +++ L+S Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKASLVLDEVLAS 160 >gi|148273673|ref|YP_001223234.1| CarD family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831603|emb|CAN02571.1| putative transcriptional regulator, CarD family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 160 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 82/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TI E+K++ + G + + + ++ + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATIIEVKKRVIRGEEKLYLKLDVNQGGLQIEVPAENVDMVGVRDVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + S Sbjct: 63 GREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+ + + A +V E+A E A L++ L+S Sbjct: 123 GEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160 >gi|262200966|ref|YP_003272174.1| transcription factor CarD [Gordonia bronchialis DSM 43247] gi|262084313|gb|ACY20281.1| transcription factor CarD [Gordonia bronchialis DSM 43247] Length = 162 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 87/160 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R + Sbjct: 3 FKVGDTVVYPHHGAARVEDIVTRTIKGEQIEYLVLKVADGDMTVQIPSTKLEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + S Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E++ + + +A ++++ L++ S Sbjct: 123 GEKRMLTRARRVLVDELSLAQNTDDEKATSILDEVLAAAS 162 >gi|83591305|ref|YP_431314.1| CarD family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83574219|gb|ABC20771.1| transcriptional regulator, CarD family [Moorella thermoacetica ATCC 39073] Length = 158 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 84/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ +G+R++ Sbjct: 2 FKVGDKVVYPMHGAGVIEAIEEREVLGKKRKYYILRLPLGDMKVMIPLESEQAVGLREVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ +K+++ W+RR + K+ SG++ +AEVV +L R + S Sbjct: 62 DEKEIQEVIKILKEPRSNGSGNWNRRYRANLEKMRSGNIYQLAEVVGNLSRREHDQGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ E+A ++ E+A + + + N++E Sbjct: 122 GERKMLENARQMLISELALARNAEKNQVENMLE 154 >gi|302340584|ref|YP_003805790.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM 11293] gi|301637769|gb|ADK83196.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM 11293] Length = 171 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ +H+VYP GVG IT+I+E+ + G K ++VI + M + +P K + G+R + Sbjct: 12 AFKVNQHVVYPLQGVGIITDIQERVLKGKKTLYYVIYLELSDMTVMIPTDKTDERGIRAI 71 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E+AL+L+ + W R Q + SG + IA VVR L+ E Sbjct: 72 VPKEEAEKALQLISEEYEPVTADWKMRYQMNLDLLRSGSINDIATVVRALYHRSKVKELP 131 Query: 133 YSERQLYESALNRMVREIAA 152 ER+LY+ A+ ++ E+ Sbjct: 132 IQERKLYDDAMKILIDEVTC 151 >gi|228994492|ref|ZP_04154342.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228765250|gb|EEM13954.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 167 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R ++ Sbjct: 16 FQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 76 DILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 136 SEKKMLDNAHEFLISELGLIKGITE 160 >gi|315924877|ref|ZP_07921094.1| CarD family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621776|gb|EFV01740.1| CarD family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 159 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 85/157 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ IVYP HG G I I+E ++ ++ + + M + +PV KA ++G+R++ Sbjct: 2 YNIGDKIVYPMHGAGVIKNIQEMDIFEKTQMYYKVTIAAEGMEILIPVDKAEEVGLREIP 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E L+++ + WS+R Q+ ++ SGD+I +A+V R+L D + S Sbjct: 62 THQDLEAMLQVLSQPEDKMTSNWSKRYQDNMDQMKSGDIIDVAKVTRNLMLLDRRKGLSS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ++++ +A N ++ E+ ++ + EA +IE ++ Sbjct: 122 GDKKMLMTAKNFLISEMMLIDGKEKEEACKIIETTVA 158 >gi|54022399|ref|YP_116641.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013907|dbj|BAD55277.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 162 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDRVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + +A L++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAEGTDDGKAETLLDEVLAAAS 162 >gi|308176321|ref|YP_003915727.1| CarD transcriptional regulator-like protein [Arthrobacter arilaitensis Re117] gi|307743784|emb|CBT74756.1| CarD transcriptional regulator-like protein [Arthrobacter arilaitensis Re117] Length = 161 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 84/158 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK +++ G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAAMIEEIKMRKIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ ++R + + T WSRR + K+ SGD+I +AEVVRDL R ++ S Sbjct: 63 GQEGLDHVFDVLRAEFTEEPTNWSRRYKANVEKLASGDVIKVAEVVRDLWRRENDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A + E +A +L++ L+S Sbjct: 123 GEKRMLAKARQVLISELALAKDLDEAKAESLLDEVLAS 160 >gi|42523769|ref|NP_969149.1| putative CarD-like transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39575976|emb|CAE80142.1| putative CarD-like transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 164 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 1/145 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F G++ VYP +GV + I+ +E+ G K F+ + + + +P G+R Sbjct: 2 QTFDVGDNAVYPGYGVVKVVSIETKEMLGTKTTFYNMQLVDTGLKIMIPTTNVKSAGLRP 61 Query: 72 LSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + R + +++ K ++ W+RR +EY KI +G + IAEV+RDL + E Sbjct: 62 IISKSEASRVVGILKEKDIKIDNQTWNRRYREYMEKIKTGSVFEIAEVLRDLFLLKADKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNS 155 S+ ER++ +SA + +++E+ S Sbjct: 122 LSFGERKMLDSARSLLLKELTLATS 146 >gi|228909469|ref|ZP_04073294.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228850246|gb|EEM95075.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] Length = 158 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|165870992|ref|ZP_02215643.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167641498|ref|ZP_02399747.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170709170|ref|ZP_02899595.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] gi|164713203|gb|EDR18729.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167510580|gb|EDR85977.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170125925|gb|EDS94827.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] Length = 153 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 2 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 62 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAHEFLISELGLIEGITE 146 >gi|315605258|ref|ZP_07880304.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313075|gb|EFU61146.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 172 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R + Sbjct: 3 FEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRDIV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S Sbjct: 63 DEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLST 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A + + E+A +I + A Sbjct: 123 GEKRMLTKARSILTSELALARNIEKTAA 150 >gi|154508491|ref|ZP_02044133.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC 17982] gi|293194140|ref|ZP_06609941.1| transcriptional regulator, CarD family [Actinomyces odontolyticus F0309] gi|153798125|gb|EDN80545.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC 17982] gi|292819782|gb|EFF78793.1| transcriptional regulator, CarD family [Actinomyces odontolyticus F0309] Length = 172 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 85/169 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R + Sbjct: 3 FEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRDIV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S Sbjct: 63 DEDGLEEVLSVLRAPYIEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLST 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 E+++ A + E+A +I + A ++ L+ + E+ E Sbjct: 123 GEKRMLTKARGILTSELALARNIEKSAAAERLDAVLAEGRIEVEEDAVE 171 >gi|184201518|ref|YP_001855725.1| hypothetical protein KRH_18720 [Kocuria rhizophila DC2201] gi|183581748|dbj|BAG30219.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 161 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG TI EIK + V G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAATIEEIKTRTVKGEEKMYLRLKVTQGDLMIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ + +++ + + + WSRR + K+ SGD++ +AEVVRDL R D S Sbjct: 63 DEDGLKQVIAVLQAQDAEEASNWSRRYKANLEKLASGDVLKVAEVVRDLWRRDRGKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A + E+A I E EA Sbjct: 123 GEKRMLTKARQILTSELALAKKIDEEEA 150 >gi|49479453|ref|YP_037723.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206976148|ref|ZP_03237057.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217961056|ref|YP_002339624.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|222097108|ref|YP_002531165.1| transcriptional regulator, card family [Bacillus cereus Q1] gi|228986740|ref|ZP_04146870.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229140266|ref|ZP_04268823.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|49331009|gb|AAT61655.1| transcriptional regulator, CarD family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206745602|gb|EDZ57000.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217063672|gb|ACJ77922.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|221241166|gb|ACM13876.1| transcriptional regulator, CarD family [Bacillus cereus Q1] gi|228643199|gb|EEK99473.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|228773071|gb|EEM21507.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 158 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|30263594|ref|NP_845971.1| CarD family transcriptional regulator [Bacillus anthracis str. Ames] gi|47528992|ref|YP_020341.1| CarD family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186442|ref|YP_029694.1| CarD family transcriptional regulator [Bacillus anthracis str. Sterne] gi|52141890|ref|YP_084935.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|65320919|ref|ZP_00393878.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bacillus anthracis str. A2012] gi|167636360|ref|ZP_02394661.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0442] gi|170689537|ref|ZP_02880724.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0465] gi|177652471|ref|ZP_02934938.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190564601|ref|ZP_03017522.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|196034117|ref|ZP_03101527.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196038188|ref|ZP_03105497.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|196044624|ref|ZP_03111859.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|218904774|ref|YP_002452608.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225865630|ref|YP_002751008.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|227813522|ref|YP_002813531.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|228928695|ref|ZP_04091731.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934921|ref|ZP_04097752.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947260|ref|ZP_04109554.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229092619|ref|ZP_04223770.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|229123162|ref|ZP_04252368.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|229157223|ref|ZP_04285303.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|229185880|ref|ZP_04313053.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|229602120|ref|YP_002867837.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0248] gi|254686212|ref|ZP_05150071.1| CarD family transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726022|ref|ZP_05187804.1| CarD family transcriptional regulator [Bacillus anthracis str. A1055] gi|254738685|ref|ZP_05196388.1| CarD family transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254744757|ref|ZP_05202435.1| CarD family transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753003|ref|ZP_05205039.1| CarD family transcriptional regulator [Bacillus anthracis str. Vollum] gi|254759274|ref|ZP_05211300.1| CarD family transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055137|ref|YP_003793348.1| CarD family transcriptional regulator [Bacillus anthracis CI] gi|30258229|gb|AAP27457.1| transcriptional regulator, CarD family [Bacillus anthracis str. Ames] gi|47504140|gb|AAT32816.1| transcriptional regulator, CarD family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180369|gb|AAT55745.1| transcriptional regulator, CarD family [Bacillus anthracis str. Sterne] gi|51975359|gb|AAU16909.1| transcriptional regulator, CarD family [Bacillus cereus E33L] gi|167528287|gb|EDR91064.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0442] gi|170666494|gb|EDT17270.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0465] gi|172082145|gb|EDT67212.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190563918|gb|EDV17882.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|195993191|gb|EDX57149.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196024659|gb|EDX63331.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|196030596|gb|EDX69194.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|218535293|gb|ACK87691.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225788624|gb|ACO28841.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|227004447|gb|ACP14190.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|228597592|gb|EEK55239.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|228626287|gb|EEK83034.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|228660255|gb|EEL15889.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|228690772|gb|EEL44548.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|228812507|gb|EEM58834.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824821|gb|EEM70622.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831014|gb|EEM76615.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229266528|gb|ACQ48165.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0248] gi|300377306|gb|ADK06210.1| transcriptional regulator, CarD family [Bacillus cereus biovar anthracis str. CI] Length = 158 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|332669115|ref|YP_004452123.1| CarD family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338153|gb|AEE44736.1| transcriptional regulator, CarD family [Cellulomonas fimi ATCC 484] Length = 160 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + ++VP +G+R + Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIRGEDKIYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A +++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEHTEEEKAEAILDEVLAS 160 >gi|242280390|ref|YP_002992519.1| CarD family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123284|gb|ACS80980.1| transcriptional regulator, CarD family [Desulfovibrio salexigens DSM 2638] Length = 171 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP+ GVG + I+ QE+ G EF+++ + + L VPV A ++G+R + Sbjct: 2 FELDQLVVYPSQGVGKVERIESQEIGGATAEFYIVRILSNNVTLMVPVMNAHNVGLRAVC 61 Query: 74 EAHFVERALKLVRGKARVKRTM---WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + ++ ++ W+RR +EY K+ SGDL +A V+++L E Sbjct: 62 DKDAGMEIFESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLQDVAYVLKELFLIGRDKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPE 160 S+ ER+L E A+ + E++ + + E Sbjct: 122 LSFGERRLLEQAMGLVSMELSFALDLDQEE 151 >gi|150392190|ref|YP_001322239.1| CarD family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952052|gb|ABR50580.1| transcriptional regulator, CarD family [Alkaliphilus metalliredigens QYMF] Length = 159 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVYP HG G I I+E+E+ G K +++++ M + +P+ ++G+R + Sbjct: 2 FNIGDKIVYPMHGAGVIEAIEEKEILGKKRKYYIMKMPLGDMQVMIPLDHIEEVGIRSII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE+ ++ W+RR + I GD+ A+AEVVR+L D + S Sbjct: 62 GLAEVEQVFAVLAADTTKMPQNWNRRYRANMDLIKGGDIYAVAEVVRNLLLRDREKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ +A +V E+ E E ++ IE Sbjct: 122 GERKMLNNAKQILVSEVVLSTDKEEQEVLDWIE 154 >gi|15639502|ref|NP_218952.1| transcription factor (carD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025741|ref|YP_001933513.1| transcription factor [Treponema pallidum subsp. pallidum SS14] gi|3322803|gb|AAC65499.1| transcription factor (carD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018316|gb|ACD70934.1| transcription factor [Treponema pallidum subsp. pallidum SS14] Length = 208 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 72/153 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R + Sbjct: 35 AFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTI 94 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ERAL+ + W R Q SG ++ A VVR L+ E Sbjct: 95 VKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELP 154 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 ER+LY+SA E+ + PE LI Sbjct: 155 IQERRLYDSAYRIFQDEMCFALGLRPPEVETLI 187 >gi|116669291|ref|YP_830224.1| CarD family transcriptional regulator [Arthrobacter sp. FB24] gi|119961222|ref|YP_946691.1| CarD-like transcriptional regulator [Arthrobacter aurescens TC1] gi|220911627|ref|YP_002486936.1| CarD family transcripitonal regulator [Arthrobacter chlorophenolicus A6] gi|116609400|gb|ABK02124.1| transcriptional regulator, CarD family [Arthrobacter sp. FB24] gi|119948081|gb|ABM06992.1| putative CarD-like transcriptional regulator [Arthrobacter aurescens TC1] gi|219858505|gb|ACL38847.1| transcriptional regulator, CarD family [Arthrobacter chlorophenolicus A6] Length = 160 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 63 GKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A E +A ++++ L+S Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160 >gi|291059888|gb|ADD72623.1| transcription factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 243 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 72/154 (46%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R + Sbjct: 70 AFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTI 129 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ERAL+ + W R Q SG ++ A VVR L+ E Sbjct: 130 VKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELP 189 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER+LY+SA E+ + PE LI Sbjct: 190 IQERRLYDSAYRIFQDEMCFALGLRPPEVETLIH 223 >gi|118478884|ref|YP_896035.1| CarD family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418109|gb|ABK86528.1| transcriptional regulator, CarD family [Bacillus thuringiensis str. Al Hakam] Length = 167 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 76 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 136 SEKKMLDNAHEFLISELGLIEGITE 160 >gi|325962196|ref|YP_004240102.1| CarD family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468283|gb|ADX71968.1| transcriptional regulator, CarD family [Arthrobacter phenanthrenivorans Sphe3] Length = 160 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 81/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R + Sbjct: 3 FEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 63 GKDGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A E +A ++++ L+S Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160 >gi|239907582|ref|YP_002954323.1| hypothetical protein DMR_29460 [Desulfovibrio magneticus RS-1] gi|239797448|dbj|BAH76437.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 170 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 2 FSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPLC 61 Query: 74 EAHFVERALKLVRGKARVKRTM---WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A ++ ++ ++ W+RR +EY K+ SGDL +A V+++L E Sbjct: 62 TAEQGAAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQNKE 121 Query: 131 KSYSERQLYESA 142 S+ ER+L E A Sbjct: 122 LSFGERRLLEQA 133 >gi|330837541|ref|YP_004412182.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM 17374] gi|329749444|gb|AEC02800.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM 17374] Length = 161 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+HIVYP GVG I I+E+ G ++VI M +K+P+ KA ++G+R + Sbjct: 3 FSVGDHIVYPLQGVGIIKCIEERNFQGEPQPYYVIHIAISDMIVKIPIAKAAEMGIRAIV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A+ + K W R Q + G + +IA+VV+ L+ E Sbjct: 63 PPSEAQEAIDSISSKYDPLPVDWKTRYQMNVDLLQQGSIASIAQVVQALYHRSKVKELPV 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 ER+LY+ AL ++ E++ S+ PE Sbjct: 123 QERKLYDGALRLLIDEVSF--SLKRPE 147 >gi|325970599|ref|YP_004246790.1| CarD family transcriptional regulator [Spirochaeta sp. Buddy] gi|324025837|gb|ADY12596.1| transcriptional regulator, CarD family [Spirochaeta sp. Buddy] Length = 167 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GEH+VYP GVG I I+E+ G ++VI D M + +PV K+ ++G+R + Sbjct: 10 FAVGEHVVYPLQGVGVIKRIEERTFRGAVTMYYVIYLDISDMTVMIPVEKSKEMGIRPIV 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E + A+ + K W R Q + G + +IA+VV+ L+ E Sbjct: 70 EQKEAQSAIDSISSKYEPMPVDWKARYQMNVDLLKQGSIASIAKVVQALYHRSKIKELPV 129 Query: 134 SERQLYESALNRMVREIA 151 ER+LY++AL ++ E A Sbjct: 130 QERKLYDNALRLLIDETA 147 >gi|229197758|ref|ZP_04324477.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|228585703|gb|EEK43802.1| Transcriptional regulator, CarD [Bacillus cereus m1293] Length = 158 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIINIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|228998394|ref|ZP_04157985.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|229005881|ref|ZP_04163575.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228755345|gb|EEM04696.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228761315|gb|EEM10270.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] Length = 158 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALTHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITE 151 >gi|220927797|ref|YP_002504706.1| CarD family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998125|gb|ACL74726.1| transcriptional regulator, CarD family [Clostridium cellulolyticum H10] Length = 159 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR--- 70 + G+ IVYP HG G I I+E+E+ G ++V+ + + +P DIG+R Sbjct: 2 YNVGDKIVYPMHGAGVIESIEEKEILGKTCSYYVMKIPIGDLKVMIPTNNITDIGIRDVI 61 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 +SEA V LK G+ + W++R +E KI SGD+ +A+VVR L + + + Sbjct: 62 SVSEADSVFDFLK--NGQHEIPSN-WNKRYRENMVKIKSGDIFEVADVVRGLMQREKEKG 118 Query: 131 KSYSERQLYESALNRMVREIAAVNSISE 158 S ER++ SA ++ E+ I++ Sbjct: 119 LSTGERKMLSSAKQILISELVLAKGINQ 146 >gi|89894787|ref|YP_518274.1| hypothetical protein DSY2041 [Desulfitobacterium hafniense Y51] gi|89334235|dbj|BAE83830.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 174 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++ Sbjct: 2 FQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEY----DAKINSGDLIAIAEVVRDLHRTDSQP 129 + V+ L+ + M+ + Y K+ SGD+ +E++RDL R + Sbjct: 62 NSEVVDDVLRFFF-EGDTDPVMFESNNRFYRDINKKKMKSGDIYQESEIIRDLTRKSNLH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 + + + +AL + EI V I +A+ +++ ++ + EK Sbjct: 121 KLGMEDNNMLHTALQLVTSEIVQVKGIEMEKAVEMLQSVINQAKEEKEK 169 >gi|228905590|ref|ZP_04069538.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228854065|gb|EEM98775.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 80/145 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSIRNMQVMIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIIHIFQHGESDRLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 S++++ ++A ++ E+ + I+E Sbjct: 127 SDKKMLDNAHEFLISELGLIKGITE 151 >gi|225022144|ref|ZP_03711336.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii ATCC 33806] gi|224945077|gb|EEG26286.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii ATCC 33806] Length = 235 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 77/152 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R + Sbjct: 42 FKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRDVV 101 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 102 GEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSA 161 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A E +A L+ Sbjct: 162 GEKRMLAKARQVLVGELALAEIKDEAKANELL 193 >gi|134097051|ref|YP_001102712.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL 2338] gi|291007008|ref|ZP_06564981.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL 2338] gi|133909674|emb|CAL99786.1| CarD family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 162 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDRVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A L++ L++ Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLAT 160 >gi|15827084|ref|NP_301347.1| transcription factor [Mycobacterium leprae TN] gi|221229562|ref|YP_002502978.1| putative transcription factor [Mycobacterium leprae Br4923] gi|13092632|emb|CAC29828.1| putative transcription factor [Mycobacterium leprae] gi|219932669|emb|CAR70413.1| putative transcription factor [Mycobacterium leprae Br4923] Length = 165 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 85/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 6 FKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 65 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ ++EVVRDL R D S Sbjct: 66 GQEGLDQVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVSEVVRDLWRRDQDRGLSA 125 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A S + +A +++ L++ S Sbjct: 126 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 165 >gi|229173800|ref|ZP_04301340.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228609650|gb|EEK66932.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 156 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 5 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNIRPVI 64 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G++ AEV+RDL R + + Sbjct: 65 DILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALNT 124 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 125 SEKKLLDDAYKFLVSELELIKGITE 149 >gi|229087271|ref|ZP_04219415.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44] gi|228696061|gb|EEL48902.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44] Length = 164 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVATSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + L W +R K+ +GDL AEVVRDL R + + + Sbjct: 67 DKNTLNDVLVGFHNGEADSSLSWKQRYTMNMEKMKNGDLSDGAEVVRDLIRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A + ++ Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATDFLQ 159 >gi|219669222|ref|YP_002459657.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539482|gb|ACL21221.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 174 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++ Sbjct: 2 FQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEY----DAKINSGDLIAIAEVVRDLHRTDSQP 129 + V+ L+ + M+ + Y K+ SGD+ +E++RDL R + Sbjct: 62 NSEVVDDVLRFFF-EGDTDPVMFESNNRFYRDINKKKMKSGDIYQESEIIRDLTRKSNLH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 + + + +AL + EI V + +A+ +++ ++ + EK Sbjct: 121 KLGMEDNNMLHTALQLVTSEIVQVKGVEMEKAVEMLQSVINQAKDEKEK 169 >gi|258651110|ref|YP_003200266.1| CarD family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554335|gb|ACV77277.1| transcriptional regulator, CarD family [Nakamurella multipartita DSM 44233] Length = 160 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 82/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I + + V G++ + V+ + + +KVP A +G+R + Sbjct: 3 FNVGETVVYPHHGAALIQATETRTVKGVEKLYLVLKVAQGDLTVKVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 DRTGLDHVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E A +++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEGTNEVRAEGILDEVLAS 160 >gi|256833291|ref|YP_003162018.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM 20603] gi|256686822|gb|ACV09715.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM 20603] Length = 161 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + ++VP +G+R + Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIRGEDKTYLKLRVAQGDLVIEVPAENIDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S Sbjct: 63 GKEGLDEVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E +A +++ L+S Sbjct: 123 GEKRMLSRARQILVSELALAERTEEDKAEAILDEVLAS 160 >gi|305680364|ref|ZP_07403172.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266] gi|305659895|gb|EFM49394.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266] Length = 196 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 77/152 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A E +A L+ Sbjct: 123 GEKRMLAKARQVLVGELALAEIKDEAKANELL 154 >gi|229030844|ref|ZP_04186866.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228730493|gb|EEL81451.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] Length = 158 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G++ AEV+RDL R + + Sbjct: 67 DILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|218898740|ref|YP_002447151.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228902146|ref|ZP_04066310.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228966545|ref|ZP_04127598.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|218545939|gb|ACK98333.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228793267|gb|EEM40817.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228857572|gb|EEN02068.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITE 151 >gi|229080349|ref|ZP_04212874.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228703018|gb|EEL55479.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] Length = 156 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 5 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPVI 64 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G++ AEV+RDL R + + Sbjct: 65 DILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALNT 124 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 125 SEKKLLDDAYKFLVSELELIKGITE 149 >gi|47567932|ref|ZP_00238639.1| CarD-like transcriptional regulator [Bacillus cereus G9241] gi|47555410|gb|EAL13754.1| CarD-like transcriptional regulator [Bacillus cereus G9241] Length = 158 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|229174309|ref|ZP_04301842.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228609166|gb|EEK66455.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 158 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 78/147 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+ G K +++VI M + +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEITGEKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 SE+++ ++A ++ E+ + I+E + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQ 153 >gi|218781211|ref|YP_002432529.1| CarD family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762595|gb|ACL05061.1| transcriptional regulator, CarD family [Desulfatibacillum alkenivorans AK-01] Length = 177 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + VYPAHGVG I ++ + + G K F+++ ++ M + +P +G+R++ Sbjct: 19 FSVNDLAVYPAHGVGRIEAVETRTIGGEKQSFYIMRILENDMVIMIPTQNVESVGLREVI 78 Query: 74 EAHFVERALKLVRGKARVK--RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + ++ G+ + W+RR ++Y KI +G L +A V RDL+ + Sbjct: 79 RKGDVSQVYAIL-GEKEIPPDNQTWNRRYRDYMEKIKTGSLFEVAGVFRDLYLLKVTKDL 137 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S+ ER+L ++A +++E++ S +E ++ IE L S Sbjct: 138 SFGERKLLDTAQTLLLKELSIAKSCTEEVIMSEIESLLES 177 >gi|75761918|ref|ZP_00741841.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490589|gb|EAO53882.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++ Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 76 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 136 SEKKMLDNAYEFLISELGLIEGITE 160 >gi|331699819|ref|YP_004336058.1| CarD family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954508|gb|AEA28205.1| transcriptional regulator, CarD family [Pseudonocardia dioxanivorans CB1190] Length = 164 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 84/161 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRTIKGEERKYLVLKVAQGDLTVRVPAENAEVVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+++ A +V E+A E A L++ L++ ++ Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEERAEVLLDEVLATAAT 163 >gi|229073067|ref|ZP_04206256.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228710053|gb|EEL62038.1| Transcriptional regulator, CarD [Bacillus cereus F65185] Length = 158 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G++ AEV+RDL R + + Sbjct: 67 DILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|111225860|ref|YP_716654.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a] gi|111153392|emb|CAJ65148.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a] Length = 160 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 77/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R + Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEERLYLVLKVAQGDLTVRVPADNVGMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKA 150 >gi|19553858|ref|NP_601860.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62391499|ref|YP_226901.1| CarD-like transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21325433|dbj|BAC00055.1| Transcriptional regulators, similar to M. xanthus CarD [Corynebacterium glutamicum ATCC 13032] gi|41326841|emb|CAF20685.1| CarD-like transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 198 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 80/148 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++ + +A Sbjct: 123 GEKRMLSKARQVLVGELALAETVDDEKA 150 >gi|229119116|ref|ZP_04248445.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228664336|gb|EEL19848.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] Length = 158 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K ++VI M + +P GK + +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKELSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +++ + + W +R + KI +G++ AEV+RDL R + + Sbjct: 67 DILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQKGAEVIRDLIRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|86742930|ref|YP_483330.1| CarD family transcriptional regulator [Frankia sp. CcI3] gi|158312226|ref|YP_001504734.1| CarD family transcriptional regulator [Frankia sp. EAN1pec] gi|288923580|ref|ZP_06417692.1| transcriptional regulator, CarD family [Frankia sp. EUN1f] gi|289642338|ref|ZP_06474486.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca glomerata] gi|86569792|gb|ABD13601.1| transcriptional regulator, CarD family [Frankia sp. CcI3] gi|158107631|gb|ABW09828.1| transcriptional regulator, CarD family [Frankia sp. EAN1pec] gi|288345079|gb|EFC79496.1| transcriptional regulator, CarD family [Frankia sp. EUN1f] gi|289507870|gb|EFD28821.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca glomerata] Length = 160 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 77/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R + Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNVGMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKA 150 >gi|296392879|ref|YP_003657763.1| CarD family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180026|gb|ADG96932.1| transcriptional regulator, CarD family [Segniliparus rotundus DSM 44985] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 83/160 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G++ E+ V+ + ++VP A IG+R + Sbjct: 3 FKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGHGDLTVRVPAENAEYIGIRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 SDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E++L A +V E+A S + +A L++ L+ S Sbjct: 123 GEKRLLAKARQVLVGELALAESSDDAKAEGLLDEVLAQAS 162 >gi|68535372|ref|YP_250077.1| putative transcription factor [Corynebacterium jeikeium K411] gi|68262971|emb|CAI36459.1| putative transcription factor [Corynebacterium jeikeium K411] Length = 196 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 77/152 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R + Sbjct: 3 FAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A + + + L+ Sbjct: 123 GEKRMLAKARQILVGELALAEGVDDKKTDTLL 154 >gi|163839171|ref|YP_001623576.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952647|gb|ABY22162.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 301 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 80/158 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R + Sbjct: 144 FEIGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 203 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S Sbjct: 204 GKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 263 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A ++ E+A E +A +++ L+S Sbjct: 264 GEKRMLAKARQILISELALAEKTDEEKAATVLDEVLAS 301 >gi|296128524|ref|YP_003635774.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM 20109] gi|296020339|gb|ADG73575.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM 20109] Length = 160 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EIK + + G + + + + ++VP +G+R + Sbjct: 3 FTVGETVVYPHHGAAKIEEIKSRTIRGEEKIYLKLKVAHGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLSRRDADRGLSA 122 Query: 134 SERQLYESALNRMVREIA 151 E+++ A +V E+A Sbjct: 123 GEKRMLAKARQILVSELA 140 >gi|228916274|ref|ZP_04079844.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843472|gb|EEM88550.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 158 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGEILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITE 151 >gi|326383079|ref|ZP_08204768.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395] gi|326198215|gb|EGD55400.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395] Length = 162 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 87/160 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R + Sbjct: 3 FKVGDTVVYPHHGAARVEDIVIRTIKGEEIEYLVLKVADGDMTVQIPSSKLEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + S Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E++ ++ +A ++++ L++ S Sbjct: 123 GEKRMLTRARRVLVDELSLAQHTNDEKADSMLDEILAAAS 162 >gi|145296658|ref|YP_001139479.1| hypothetical protein cgR_2565 [Corynebacterium glutamicum R] gi|140846578|dbj|BAF55577.1| hypothetical protein [Corynebacterium glutamicum R] Length = 198 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 80/148 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A ++ + +A Sbjct: 123 GEKRMLSKARQVLVGELALAETVDDVKA 150 >gi|284028991|ref|YP_003378922.1| CarD family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808284|gb|ADB30123.1| transcriptional regulator, CarD family [Kribbella flavida DSM 17836] Length = 161 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ +++ G + V+ ++ + ++VP +G+R + Sbjct: 3 FTVGETVVYPNHGAAVIEDIETRQIKGEDKTYLVLRIVAQNDLVVRVPACNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +ER ++R + T WSRR + K++SGD++ +AEVVRDL R + S Sbjct: 63 VDQAGLERVFDVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A +++ L+S Sbjct: 123 AGEKRMLAKARQILVSELALAEHTNEDKAEAILDEVLAS 161 >gi|228993464|ref|ZP_04153374.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228999501|ref|ZP_04159079.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|229007057|ref|ZP_04164684.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228754206|gb|EEM03624.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228760212|gb|EEM09180.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|228766286|gb|EEM14930.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 83/153 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKIRQYCVIHMVISDMQVMIPMDKVENSGIRYVV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + L + W +R K+ +G+L+ AEVVRDL R + + + Sbjct: 67 DKNTLNDVLVDIHNGEADHSLSWKQRYTMNMEKMKNGNLLDGAEVVRDLIRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A +++ Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATYILQ 159 >gi|28493316|ref|NP_787477.1| transcriptional regulator [Tropheryma whipplei str. Twist] gi|28572573|ref|NP_789353.1| transcription regulator CarD [Tropheryma whipplei TW08/27] gi|28410705|emb|CAD67091.1| putative CarD-family transcriptional regulator [Tropheryma whipplei TW08/27] gi|28476357|gb|AAO44446.1| transcriptional regulator [Tropheryma whipplei str. Twist] Length = 160 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 82/153 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG +I EIK++ + G ++ + + + ++VP K +G+R + Sbjct: 3 FKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRGVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ R ++++R + T WSRR + KI SGD+ + EVVRDL R + S Sbjct: 63 DSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A ++ +A L++ Sbjct: 123 GEKRMLTRARGILVAELALARHTNQEDAEALLD 155 >gi|312194274|ref|YP_004014335.1| CarD family transcriptional regulator [Frankia sp. EuI1c] gi|311225610|gb|ADP78465.1| transcriptional regulator, CarD family [Frankia sp. EuI1c] Length = 160 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 77/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R + Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNIGMVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A +E +A Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKA 150 >gi|284048085|ref|YP_003398424.1| transcriptional regulator, CarD family [Acidaminococcus fermentans DSM 20731] gi|283952306|gb|ADB47109.1| transcriptional regulator, CarD family [Acidaminococcus fermentans DSM 20731] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ ++YP HG I ++++++ G + +FV+ M + +P IG+R + Sbjct: 2 FTVGDKVLYPMHGAAVIKNVEQKQIDGHPVNYFVLKMLLSDMKVLIPEVNVDKIGLRPIV 61 Query: 74 EAHF---VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 VE LK R + ++KR W+RR Y K+ +GD+ +A+VVR L +++ + Sbjct: 62 NKAILPKVEDVLK-ARPENKMKRITWNRRYNMYVDKMKTGDIFEVADVVRTLAVQETEKK 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISE 158 S ER+L +A ++ E V S+ E Sbjct: 121 LSAGERRLLTTAKQILLSEFMLVESVDE 148 >gi|317507825|ref|ZP_07965526.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253867|gb|EFV13236.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G++ E+ V+ + + ++VP A IG+R + Sbjct: 3 FKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGQGDLTVRVPAENAEYIGIRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 SDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E++L A +V E+A S + +A L++ L+ S Sbjct: 123 GEKRLLAKARQVLVGELALAESSDDEKAECLLDEVLAEAS 162 >gi|169627671|ref|YP_001701320.1| putative CarD-like transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239638|emb|CAM60666.1| Putative CarD-like transcriptional regulator [Mycobacterium abscessus] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 85/160 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + + S Sbjct: 63 GREGLDTVFQVLRAPHTEEPTNWSRRFKANQEKLASGDVKKVAEVVRDLWRREQERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAENTNAAKADTILDEVLAAAS 162 >gi|312144273|ref|YP_003995719.1| transcriptional regulator, CarD family [Halanaerobium sp. 'sapolanicus'] gi|311904924|gb|ADQ15365.1| transcriptional regulator, CarD family [Halanaerobium sp. 'sapolanicus'] Length = 166 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 75/147 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ +VYP HG GTI I+ + + K +++++ +M + +PV K IG+R + Sbjct: 2 YKIGDKVVYPNHGAGTIVGIETKTILDEKKKYYIMKLPIGEMKVMIPVDKIDKIGIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 KL+ G+ W+RR + K+ +GD+ +AEVVR+L D + S Sbjct: 62 SEEKANDVFKLLNGEKSKMSQNWNRRYRANQEKLKTGDIFEVAEVVRNLSIRDREKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 E+++ +A ++ E+ + E E Sbjct: 122 GEKKMLSNARKILISELVLAKDMDEEE 148 >gi|326332061|ref|ZP_08198346.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium Broad-1] gi|325950199|gb|EGD42254.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium Broad-1] Length = 161 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ + + G + ++ V+ + + ++VP +G+R + Sbjct: 3 FTVGETVVYPNHGAAVIEDIEMRTIKGEERQYLVLRIIAQQDLVVRVPANNLELVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++R +++R + + T WSRR + K++SGD++ +AEVVRDL R + S Sbjct: 63 VDKDGLDRVFEVLRAEHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A L++ L+S Sbjct: 123 AGEKRMLAKARQILVSELALCEHTNEDKAEVLLDEVLAS 161 >gi|183601479|ref|ZP_02962849.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219683979|ref|YP_002470362.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241191021|ref|YP_002968415.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196427|ref|YP_002969982.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219085|gb|EDT89726.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219621629|gb|ACL29786.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249413|gb|ACS46353.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250981|gb|ACS47920.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794010|gb|ADG33545.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 198 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + EI ++ V G+ E+ ++ D + + VPV +G+R Sbjct: 2 GYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVRD 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + V R +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 62 IVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 121 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + + EIA +SE E L++VNL Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLG 161 >gi|260905792|ref|ZP_05914114.1| transcriptional regulator, CarD family protein [Brevibacterium linens BL2] Length = 160 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 73/138 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG TI +IK++ + G + + + + ++VP +G+R + Sbjct: 3 FEVGDTVVYPHHGAATIQDIKKRTIKGEEKLYLKLQVAHGDLVIEVPAENCDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + S Sbjct: 63 GEEGVEKVFNVLRAEFVEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLWRREQDRGLST 122 Query: 134 SERQLYESALNRMVREIA 151 E+++ A +V E+A Sbjct: 123 GEKRMLSKARQILVSELA 140 >gi|260578403|ref|ZP_05846317.1| transcription factor [Corynebacterium jeikeium ATCC 43734] gi|258603425|gb|EEW16688.1| transcription factor [Corynebacterium jeikeium ATCC 43734] Length = 196 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 77/152 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R + Sbjct: 3 FAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A + + + L+ Sbjct: 123 GEKRMLAKARQILVGELALAEGVDDKKTDALL 154 >gi|229077167|ref|ZP_04209871.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229100763|ref|ZP_04231596.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228682650|gb|EEL36695.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228706186|gb|EEL58471.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] Length = 158 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R + Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRPVI 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +++ + + W +R + KI +G++ AEV+RDL R + + Sbjct: 67 DILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQEGAEVIRDLIRMKKEKALNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L + A +V E+ + I+E Sbjct: 127 SEKKLLDDAYKFLVSELELIKGITE 151 >gi|256374519|ref|YP_003098179.1| CarD family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918822|gb|ACU34333.1| transcriptional regulator, CarD family [Actinosynnema mirum DSM 43827] Length = 162 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A E +A L++ L++ S Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLATAS 162 >gi|111021431|ref|YP_704403.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1] gi|226363787|ref|YP_002781569.1| hypothetical protein ROP_43770 [Rhodococcus opacus B4] gi|110820961|gb|ABG96245.1| probable transcriptional regulator, CarD family protein [Rhodococcus jostii RHA1] gi|226242276|dbj|BAH52624.1| hypothetical protein [Rhodococcus opacus B4] Length = 162 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 83/160 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAEGTDSDKAETILDEVLAAAS 162 >gi|256397245|ref|YP_003118809.1| CarD family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363471|gb|ACU76968.1| transcriptional regulator, CarD family [Catenulispora acidiphila DSM 44928] Length = 160 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 87/158 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I +I+ + + G E+ V+ + + ++VP KA +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEDIEIRVIKGEPKEYLVLKVAQGDLTVRVPSEKAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +ER ++R + T WSRR + KI SGD+I +AEVVRDL R D S Sbjct: 63 DQGGLERVFDVLRAPHTEEPTNWSRRYKANIEKIQSGDVIKVAEVVRDLWRRDRDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + +E +A +++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEATNEDKADAILDEVLAS 160 >gi|289178764|gb|ADC86010.1| CarD-like transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 223 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + EI ++ V G+ E+ ++ D + + VPV +G+R Sbjct: 27 GYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVRD 86 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + V R +++R K WSRR + KI +GD+ IAEVVRDL + D Sbjct: 87 IVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 146 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A + + EIA +SE E L++VNL Sbjct: 147 LSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLG 186 >gi|226304175|ref|YP_002764133.1| hypothetical protein RER_06860 [Rhodococcus erythropolis PR4] gi|229494349|ref|ZP_04388112.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis SK121] gi|226183290|dbj|BAH31394.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229318711|gb|EEN84569.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis SK121] Length = 162 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 83/160 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAEGTDTEKAETILDEVLAAAS 162 >gi|15616497|ref|NP_244803.1| transcriptional regulator [Bacillus halodurans C-125] gi|10176560|dbj|BAB07654.1| transcriptional regulator [Bacillus halodurans C-125] Length = 153 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+H+VYP HG G I I+E+E+AG + ++FVI + M + +P K +R ++ Sbjct: 2 FQIGDHVVYPMHGAGIIKAIEEKEIAGERKQYFVIKMSINNMDVMIPADKISSTNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ + + + + W R + K+ +G + AEVVRDL R + + Sbjct: 62 DLTALKQIIHIFQHGESEQLLPWKERYKMNADKMKTGHIQEGAEVVRDLMRIKKEKALNP 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ + A + E+ + I+E Sbjct: 122 SEKKMLDDAREFLNSELGLIEGITE 146 >gi|227495622|ref|ZP_03925938.1| possible transcription factor CarD [Actinomyces coleocanis DSM 15436] gi|226830854|gb|EEH63237.1| possible transcription factor CarD [Actinomyces coleocanis DSM 15436] Length = 169 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 72/148 (48%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE IVYP HG TI EI +E G K + + + + ++VP +G R + Sbjct: 3 FHIGETIVYPHHGAATIEEINVREFKGEKRTYLTLRVAQGDLTIQVPADNVEMVGGRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + ++ + + +WSRR ++ KI SG + ++AEVVRDL R D+ S Sbjct: 63 DEGGFQEVVDILHEDSTDEPAIWSRRYKQNQEKIASGSIRSVAEVVRDLTRRDAVKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+ + A + E+A I E A Sbjct: 123 GEKCMLSKARQILTSEVALARGIDEAAA 150 >gi|119718259|ref|YP_925224.1| CarD family transcriptional regulator [Nocardioides sp. JS614] gi|119538920|gb|ABL83537.1| transcriptional regulator, CarD family [Nocardioides sp. JS614] Length = 161 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ +++ G ++ V+ + + ++VP +G+R + Sbjct: 3 FTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++R ++R + T WSRR + K++SGD++ +AEVVRDL R + S Sbjct: 63 VDKEGLDRVFDVLRAAHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A L++ L+S Sbjct: 123 AGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS 161 >gi|257057465|ref|YP_003135297.1| transcriptional regulator, CarD family [Saccharomonospora viridis DSM 43017] gi|256587337|gb|ACU98470.1| transcriptional regulator, CarD family [Saccharomonospora viridis DSM 43017] Length = 163 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + R ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLNRVFDVLRAPHTDEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ A +V E+A E +A L++ Sbjct: 123 GEKRMLAKARQILVSELALAEGTDESKAEVLLD 155 >gi|332653050|ref|ZP_08418795.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] gi|332518196|gb|EGJ47799.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] Length = 158 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +V+P HG G + I +++V G+ E++V+ M + VP +IG+R + Sbjct: 2 FQIGDKVVHPMHGAGIVDSIVQKKVNGVMREYYVLKLPVRAMVVMVPTENCEEIGVRPIV 61 Query: 74 EAHFVERALKLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +R L + +V+ T W+RR +E +I SGDL +A VV+ L D Q S Sbjct: 62 DREQADRVLAAI-PDIQVEMTQNWNRRYRENMERIKSGDLFEVARVVKGLMLRDVQKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSIS 157 ER++ SA ++ EI S S Sbjct: 121 TGERKMLHSAKQILISEIVMCQSSS 145 >gi|302530715|ref|ZP_07283057.1| transcription regulator CarD [Streptomyces sp. AA4] gi|302439610|gb|EFL11426.1| transcription regulator CarD [Streptomyces sp. AA4] Length = 163 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 82/160 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A E +A L++ L + + Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLETAT 162 >gi|172041356|ref|YP_001801070.1| putative transcription factor [Corynebacterium urealyticum DSM 7109] gi|171852660|emb|CAQ05636.1| putative transcription factor [Corynebacterium urealyticum DSM 7109] Length = 190 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 76/148 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+++E G +++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAQIEGIEQREFKGETVDYLVLRLYQGDLSVRVPAANAEKVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD +AEVVRDL R D S Sbjct: 63 GEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLTSGDQNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A + + + +A Sbjct: 123 GEKRMLAKARQILVGELALADGVDDKKA 150 >gi|309389958|gb|ADO77838.1| transcriptional regulator, CarD family [Halanaerobium praevalens DSM 2228] Length = 168 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ +VYP HG GTI I + + K E++++ +M + +PV K IG+R + Sbjct: 2 YKIGDKVVYPNHGAGTIVGIDTKTILDEKKEYYIMKLPIGEMKVMIPVDKIDKIGIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +L+ G+ W+RR + K+ +GD+ +AEVVR+L D S Sbjct: 62 SEEKADEVFELLDGEKSKMSQNWNRRFRANQEKLKTGDIFEVAEVVRNLSIRDRDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 E+++ +A ++ E+ + E Sbjct: 122 GEKKMLSNARQILISELVLAKDMDE 146 >gi|317123120|ref|YP_004103123.1| CarD family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593100|gb|ADU52396.1| transcriptional regulator, CarD family [Thermaerobacter marianensis DSM 12885] Length = 190 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 78/169 (46%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+EV G + ++V+ M + +P A G+R + Sbjct: 2 FEVGDRVVYPMHGAGVIEAIEEREVLGKRHRYYVLRLPVGDMRVMIPTTTASRCGLRPVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 A V L + A W+ R +E+ K+ +GD++ +A VVR+L + S Sbjct: 62 PAEQVPAVLDALGDPAPPMDPNWNHRYREHADKLRTGDVLEVAAVVRNLSARQRERGLSG 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 ER+L + A +V E+ + + + L++ L + E Sbjct: 122 GERRLLDQARQILVSELTLASGLDQAAVDALVDRCLEGGAGDGPGPFPE 170 >gi|327439855|dbj|BAK16220.1| transcriptional regulator, similar to M. xanthus CarD [Solibacillus silvestris StLB046] Length = 153 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE+I+YP HG G I ++E+E+ G K + ++I M + +P+ K + +R ++ Sbjct: 2 FQIGENIIYPMHGAGIIKAVEEKEILGEKQQCYIIKMSVGNMQITIPMDKILSSSIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + + + W +R + K+ +G ++ AEVVRDL R + + Sbjct: 62 DIIELKHILHIFQHGESDEVLPWRQRYKVNTDKVKTGKILECAEVVRDLMRMKEEKALNT 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ + ++ E+ + I+E Sbjct: 122 SEKEMLNNTHQFLISELGLIKGITE 146 >gi|312138097|ref|YP_004005433.1| card like transcriptional regulator [Rhodococcus equi 103S] gi|325674999|ref|ZP_08154686.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311887436|emb|CBH46748.1| CarD like transcriptional regulator [Rhodococcus equi 103S] gi|325554585|gb|EGD24260.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 162 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A + +A +++ L++ S Sbjct: 123 GEKRMLAKARQILVGELALAEGTDDAKAEIILDEVLAAAS 162 >gi|257068115|ref|YP_003154370.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM 4810] gi|256558933|gb|ACU84780.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM 4810] Length = 160 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I E+K + + G + + + + ++VP +G+R + Sbjct: 3 FAVGETVVYPHHGAALIEEVKTRTIKGEDRTYLKLKVAQGDLTIEVPADNVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ ++R + T WSRR + K+ SGD+ +AEVVRDL R D S Sbjct: 63 DKEGLDEVFDVLRQPYTEEPTNWSRRYKANVEKLASGDVKKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E A ++++ L+S Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEGNAESILDEVLAS 160 >gi|311029189|ref|ZP_07707279.1| CarD family transcriptional regulator [Bacillus sp. m3-13] Length = 136 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 72/124 (58%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++VYP HGVG I +I+E+E++G K +++VI+ M + +P GK + +R ++ Sbjct: 7 FKIGDNVVYPMHGVGIIKDIEEKEISGEKQQYYVISMLISNMQIMIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G ++ AEVVRDL R + + Sbjct: 67 DIIALKHIMHIFQHGESDRLLPWKQRFKLNTEKIKTGKILEGAEVVRDLLRMKKEKALNS 126 Query: 134 SERQ 137 SE++ Sbjct: 127 SEKK 130 >gi|194014646|ref|ZP_03053263.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061] gi|194013672|gb|EDW23237.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061] Length = 157 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R+++ Sbjct: 2 FQIGNKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMPN--MQMMIPRGRINQLGIRQVA 59 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + W +R E K+ +G + A+VV+DL R + + + Sbjct: 60 DQATLKVVMNNFAEETNDDTLTWKQRYDENMKKLKTGAIEDGADVVKDLMRRNQKKALNS 119 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SE+++ E A +V EI+ +S+ E ++ +E L Sbjct: 120 SEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155 >gi|213965110|ref|ZP_03393308.1| transcriptional regulator, CarD family protein [Corynebacterium amycolatum SK46] gi|213952224|gb|EEB63608.1| transcriptional regulator, CarD family protein [Corynebacterium amycolatum SK46] Length = 191 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 74/145 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I I E+E+ G +++ V+ + + ++VP A +G+R + Sbjct: 3 FSIGDTVVYPHHGAAKIENIIERELNGETVQYLVLQILQSDLNIQVPAKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLGSGDINKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 E+++ A +V E+A + + E Sbjct: 123 GEKRMLSKARQVLVGELALADGVDE 147 >gi|229819270|ref|YP_002880796.1| CarD family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565183|gb|ACQ79034.1| transcriptional regulator, CarD family [Beutenbergia cavernae DSM 12333] Length = 160 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I EI + + G + + + + + ++VP +G+R + Sbjct: 3 FNVGETVVYPHHGAALIEEISTRVIRGEEKLYLRLRVAQGDLTIEVPAENVDLVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ +++R + T WSRR + KI SGD+I +AEVVRDL R D S Sbjct: 63 GKEGLDKVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E A +++ L+S Sbjct: 123 GEKRMLARARQILVSELALAEKTEEDRAEAILDEVLAS 160 >gi|295394468|ref|ZP_06804691.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972647|gb|EFG48499.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 175 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 73/143 (51%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 ++R + F+ G+ +VYP HG TI EIK + + G + + + ++VP Sbjct: 9 RERGKNKMSFQVGDTVVYPHHGAATIQEIKTRTIKGEDKLYLKLQVSHGDLTIEVPAENC 68 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +G+R + +E+ +++R + + T WSRR + K SGD+I +AEVVRDL R Sbjct: 69 DLVGVRDVVGEEGLEKVFQVLRAEVTEEPTNWSRRYKANLEKFQSGDVIKVAEVVRDLWR 128 Query: 125 TDSQPEKSYSERQLYESALNRMV 147 + S E+++ A +V Sbjct: 129 REQDRGLSTGEKRMLAKARQVLV 151 >gi|257456307|ref|ZP_05621504.1| transcription factor [Treponema vincentii ATCC 35580] gi|257446393|gb|EEV21439.1| transcription factor [Treponema vincentii ATCC 35580] Length = 198 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F E +VYP GVG I EI E++ L ++VI FD+ M + VP KA ++G+R + Sbjct: 5 SFTVKERVVYPGQGVGEIVEISEKKFKDEMLTYYVIYFDESDMTVLVPAMKAAELGIRTI 64 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A + AL + K + W R Q +G ++ A +VR L+ E Sbjct: 65 VSADEAQAALAFLSEKFDPIPSDWKMRYQMNLDLFKTGSILDNASIVRSLYHRSKIKELP 124 Query: 133 YSERQLYESALNRMVREIA 151 ER+LY+SA E++ Sbjct: 125 IQERKLYDSAYRIFYDELS 143 >gi|157692393|ref|YP_001486855.1| transcription factor CarD [Bacillus pumilus SAFR-032] gi|157681151|gb|ABV62295.1| possible transcription factor CarD [Bacillus pumilus SAFR-032] Length = 158 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R ++ Sbjct: 2 FQIGDKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMPN--MQMMIPRGRINQLGIRPVA 59 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + W +R E K+ +G + A+VV+DL R + + + Sbjct: 60 DQATLKVVMNNFAEETNDDTLTWKQRYDENLKKLKTGAIEDGADVVKDLMRRNQKKALNS 119 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SE+++ E A +V EI+ +S+ E ++ +E L Sbjct: 120 SEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155 >gi|300790484|ref|YP_003770775.1| CarD family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799998|gb|ADJ50373.1| CarD family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 163 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 82/160 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ A +V E+A E +A L++ L + + Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLETAT 162 >gi|154685003|ref|YP_001420164.1| YdeB [Bacillus amyloliquefaciens FZB42] gi|154350854|gb|ABS72933.1| YdeB [Bacillus amyloliquefaciens FZB42] Length = 153 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG GTI I+E++ K +++VI M + +P K + +R ++ Sbjct: 2 FQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + K W +R KI +G++ AEVVRDL R + + Sbjct: 62 DIRALKHIIHIFQHGESDKLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNS 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAYEFLISELEVIKGITE 146 >gi|154497963|ref|ZP_02036341.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC 29799] gi|150272953|gb|EDN00110.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC 29799] Length = 158 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IV+P HG G + I ++V G+ E++++ M + VP + +IG+R + Sbjct: 2 FQVGDKIVHPMHGAGVVDSIVRKKVNGVVREYYILKLPVGGMLVMVPTEHSEEIGVRPVC 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +R L + W+RR +E ++ SGDL+ +A VV+ L R D S Sbjct: 62 QRDEADRVLAAIPDIEVDMTQNWNRRYRENMMRLKSGDLLEVARVVKGLMRRDEDRGLST 121 Query: 134 SERQLYESALNRMVREIA 151 ER++ SA ++ EI Sbjct: 122 GERKMLHSAKQILISEIV 139 >gi|116624660|ref|YP_826816.1| CarD family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227822|gb|ABJ86531.1| transcriptional regulator, CarD family [Candidatus Solibacter usitatus Ellin6076] Length = 170 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP GVG I I + +F+++ F M + VP A +IG+R+++ Sbjct: 4 FQIGDKVVYPNQGVGIIENISIRSFGSAFEKFYLLRFGCSSMTVLVPFSNAANIGLRRVT 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R L + W R +E K+ SGDL+ AEV + L + S+ Sbjct: 64 KDREISRILSYLATGWCPLNPDWKVRFKENTDKMQSGDLLKAAEVFKVLLQLHVDKPLSF 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E+++ + A + +V EI+ ++ E A+ L++ Sbjct: 124 REKKMLDRARHMLVSEISIARNVPEIHAVGLMQ 156 >gi|319442432|ref|ZP_07991588.1| putative transcription factor [Corynebacterium variabile DSM 44702] Length = 194 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG + I+++E G +++ V+ + + +KVP A +G+R + Sbjct: 3 FNIGDVVVYPHHGAAEVKGIEQREFKGQSVDYLVLRILQGDLLVKVPAANAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNRVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 E+++ A +V E+A + + ++ +I Sbjct: 123 GEKRMLAKARQVLVGELALAEGVDDKKSDEVI 154 >gi|227500782|ref|ZP_03930831.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098] gi|227217087|gb|EEI82445.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098] Length = 159 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 79/153 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++E G + ++F++ M + +P K D+ +R + Sbjct: 2 FKIGDKIVYPMHGAGIIDSIEKKEFLGEEKDYFILKMPIGDMDISIPTNKINDMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +R LK++ + + W+ R ++ + +GD+ IA++VR+L D S Sbjct: 62 SKEEGDRVLKILDDEPSDMSSNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDKDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L + + E+ S+ + EA +I+ Sbjct: 122 TEKKLLNRSRRILASELVMAGSLEKEEAEKMID 154 >gi|229175432|ref|ZP_04302945.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228608040|gb|EEK65349.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 164 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQIMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDGILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V ++SE +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQ 159 >gi|328908150|gb|EGG27909.1| putative transcriptional regulator [Propionibacterium sp. P08] Length = 161 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R + Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R + S Sbjct: 63 VDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + + +A +++ L+S Sbjct: 123 AGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 161 >gi|284043149|ref|YP_003393489.1| transcriptional regulator, CarD family [Conexibacter woesei DSM 14684] gi|283947370|gb|ADB50114.1| transcriptional regulator, CarD family [Conexibacter woesei DSM 14684] Length = 171 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HG G + + +++E+ G E+ I + M + VP A G+R++ Sbjct: 3 FEIGDNVVYPHHGAGKVLKKEDKEILGETREYLTIKILHNDMTVMVPTANAAVAGLRRVI 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + V++ L +++ + W+RR + KI +GD+ +AEVVR+L +++ S Sbjct: 63 DEETVKKVLAVLQDECSDMPKNWNRRFKHNRDKIKTGDIYELAEVVRNLAIREAEKGLST 122 Query: 134 SERQLYESA 142 E+Q++ A Sbjct: 123 GEKQMFTRA 131 >gi|16077580|ref|NP_388394.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|81345932|sp|P96659|YDEB_BACSU RecName: Full=Uncharacterized protein ydeB gi|1881322|dbj|BAA19349.1| ydeB [Bacillus subtilis] gi|2632813|emb|CAB12320.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 62 DILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAYEFLISELEVIKGITE 146 >gi|313835593|gb|EFS73307.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA2] gi|314928689|gb|EFS92520.1| CarD-like transcriptional regulator [Propionibacterium acnes HL044PA1] gi|314970294|gb|EFT14392.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA3] Length = 181 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R + Sbjct: 23 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDV 82 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R + S Sbjct: 83 VDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 142 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + + +A +++ L+S Sbjct: 143 AGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 181 >gi|221308340|ref|ZP_03590187.1| hypothetical protein Bsubs1_02893 [Bacillus subtilis subsp. subtilis str. 168] gi|221312662|ref|ZP_03594467.1| hypothetical protein BsubsN3_02869 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317585|ref|ZP_03598879.1| hypothetical protein BsubsJ_02828 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321861|ref|ZP_03603155.1| hypothetical protein BsubsS_02899 [Bacillus subtilis subsp. subtilis str. SMY] gi|291482932|dbj|BAI84007.1| hypothetical protein BSNT_00885 [Bacillus subtilis subsp. natto BEST195] Length = 158 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELEVIKGITE 151 >gi|302870278|ref|YP_003838915.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029] gi|315503446|ref|YP_004082333.1| transcriptional regulator, card family [Micromonospora sp. L5] gi|302573137|gb|ADL49339.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029] gi|315410065|gb|ADU08182.1| transcriptional regulator, CarD family [Micromonospora sp. L5] Length = 161 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I I+ + + G E+ V+ + + ++VP A +G+R++ Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEPREYLVLRVAQGDLTVRVPAENAEIVGVREVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++ A + +V E+A ++ EA L++ L+ Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLT 159 >gi|227489404|ref|ZP_03919720.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227540998|ref|ZP_03971047.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090582|gb|EEI25894.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183258|gb|EEI64230.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 193 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG + + +++E G +F V+ + ++VPV A +G+R + Sbjct: 3 FNVGDIVVYPHHGAAEVAKTEQREHKGEMTDFLVLKILHSDLVVRVPVANAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GKEGLEKVFGMLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 E+++ A +V E+A + + Sbjct: 123 GEKRMLAKARQILVGELALAGPVDD 147 >gi|320538285|ref|ZP_08038170.1| CarD-like transcriptional regulator [Treponema phagedenis F0421] gi|320144861|gb|EFW36592.1| CarD-like transcriptional regulator [Treponema phagedenis F0421] Length = 205 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP GVG ITEI ++E L+++VI + M + VPV +A ++G+R + Sbjct: 7 FAVNQKVVYPGQGVGEITEICKKEFKEEMLQYYVIYLEDSDMTMMVPVMRAEELGIRTIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E AL + + W R Q SG ++ + +VR L+ E Sbjct: 67 SKKDAESALDFLSKEVEQGPLDWKMRYQMNLDLFKSGGVLDNSTIVRSLYHRSKIKELPI 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 ER+LY+SA EI+A + + E +LI L Sbjct: 127 QERKLYDSAYRIFEDEISAALGLPQNEIKSLIHTYL 162 >gi|256372655|ref|YP_003110479.1| CarD family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256009239|gb|ACU54806.1| transcriptional regulator, CarD family [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 2/149 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG IT + E G E+FV+ + +++PV ++G+R++ Sbjct: 3 FDVGDKVVYPQHGAAVITGREVVEAFGEAKEYFVVTVAYGDLTVRLPVDAVDEVGLREVI 62 Query: 74 EAHFVERALKLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE V GK V+ WSRR + + K+ SGD+ +AEVVR+L D S Sbjct: 63 NDEEVEEVFA-VLGKKDVRMPANWSRRYKNHLEKVKSGDIYQVAEVVRNLTLRDHDKGLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 ER++ A +V E+ ++ EA Sbjct: 122 AGERRMLAKARQVLVSELTFALDVAPEEA 150 >gi|297627026|ref|YP_003688789.1| CarD family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922791|emb|CBL57369.1| transcriptional regulator CarD [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 161 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I + + +++ G + V+ + + ++VP +G+R + Sbjct: 3 FTVGETVVYPNHGAAVIEDTETRKIKGEDTLYLVLRILGQTDLVVRVPACNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E+ ++R + T WSRR + K++SGD++ ++EVVRDL R + + S Sbjct: 63 VDEEGLEKVFSVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVSEVVRDLWRREKERGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A + E A +++ L+S Sbjct: 123 AGEKRMLAKARQILVSELALAEKVEEERAEVMLDEVLAS 161 >gi|47565141|ref|ZP_00236184.1| CarD-like transcriptional regulator [Bacillus cereus G9241] gi|47557927|gb|EAL16252.1| CarD-like transcriptional regulator [Bacillus cereus G9241] Length = 162 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 5 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 64 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 65 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 125 SEKQMLDNARKMMISEVALVQNVSEHQA 152 >gi|324328612|gb|ADY23872.1| transcriptional regulator, CarD family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 159 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 2 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 62 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 122 SEKQMLDNARKMMISEVALVQNVSEHQA 149 >gi|229158326|ref|ZP_04286393.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|228625284|gb|EEK82044.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] Length = 164 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQA 154 >gi|94264420|ref|ZP_01288210.1| Transcription factor CarD [delta proteobacterium MLMS-1] gi|93455177|gb|EAT05395.1| Transcription factor CarD [delta proteobacterium MLMS-1] Length = 166 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 3/146 (2%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 D F+ G+ VYPAHGVG I I+ ++V ++ F+VI + M + +P ++ Sbjct: 2 DVALDTFQVGDMAVYPAHGVGRIESIESRQVGELEQSFYVIRIVESNMTVMIPTKSCNNV 61 Query: 68 GMRKLSEAHFVERALKLV--RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 G+R + V++ ++ RG V + W++R +EY +I +G + IA V+RDL Sbjct: 62 GLRNIICPGDVKQVFAILGERGLEMVSQP-WNQRYREYTNRIKTGSVFEIAAVLRDLLLL 120 Query: 126 DSQPEKSYSERQLYESALNRMVREIA 151 + E S+ ER++ E+A +++EIA Sbjct: 121 RADKELSFGERKMVETARGLLIKEIA 146 >gi|311066998|ref|YP_003971921.1| putative transcriptional regulator [Bacillus atrophaeus 1942] gi|310867515|gb|ADP30990.1| putative transcriptional regulator [Bacillus atrophaeus 1942] Length = 153 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 78/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K + +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEYSEEKQQYYVIKMSISNMQVMIPTRKILSSSIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 62 DILALKHIIHIFQHGESDRLLPWKQRYKVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNS 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 122 SEKKMLDNAYEFLISELEVIKGITE 146 >gi|42783903|ref|NP_981150.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987] gi|206977288|ref|ZP_03238185.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217962204|ref|YP_002340774.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|228987970|ref|ZP_04148076.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141451|ref|ZP_04269988.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|42739833|gb|AAS43758.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987] gi|206744439|gb|EDZ55849.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217066173|gb|ACJ80423.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|228642014|gb|EEK98308.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|228771774|gb|EEM20234.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 164 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQA 154 >gi|282853418|ref|ZP_06262755.1| CarD-like protein [Propionibacterium acnes J139] gi|282582871|gb|EFB88251.1| CarD-like protein [Propionibacterium acnes J139] Length = 161 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R + Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRVLGQNDLVVRVPASNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E +++R + + WSRR + K++SG+++ +AEVVRDL R + S Sbjct: 63 VDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +++ A +++ L+S Sbjct: 123 AGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161 >gi|299144435|ref|ZP_07037515.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518920|gb|EFI42659.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 161 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 1/154 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+++E+ G +++++ + M + VPV A ++G+R++ Sbjct: 2 FDIGDKVVYPMHGAGVIVAIEDREILGEIRKYYILKMPINDMKVMVPVENADEVGVREIL 61 Query: 74 EAHFVERALKLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + L+++ W+RR + +I SG++ IA+VVR L R DS+ S Sbjct: 62 DEDKMNLVLEVLSCNEITNMPKNWNRRYRFNMDRIKSGNIEEIAKVVRCLERLDSKKSLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ A +V E+ V + S E L++ Sbjct: 122 TGERKMLNGAKQIIVSEMVLVYNKSVEEITELVD 155 >gi|317128335|ref|YP_004094617.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus DSM 2522] gi|315473283|gb|ADU29886.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus DSM 2522] Length = 163 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+H+VYP HG GTI +I+E+++ G KL ++V+ F + + L +P + G+RK+ Sbjct: 2 FNVGDHVVYPYHGAGTIKDIEEKDILGEKLNYYVVFFPLNHVTLMLPENRIKSSGLRKII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSR-RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E + ++ + +R ++E + + SG +I A V+ +L T + E++ Sbjct: 62 QPKQIEEVVTAMQPTEYASKKEAARPYSKENETLLKSGSIIDAAMVIANL--TSKEGERT 119 Query: 133 ----YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 +R+ + A +V E+ V +ISE EA I N Sbjct: 120 NGLHMEDRKNLDRAKQFIVSELMLVKNISEEEAYQFINEN 159 >gi|256828487|ref|YP_003157215.1| CarD family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577663|gb|ACU88799.1| transcriptional regulator, CarD family [Desulfomicrobium baculatum DSM 4028] Length = 176 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F E +VYPA GVG + I+ QE+ G+ E ++ + + L VPV A ++G+R + Sbjct: 2 FSVDELVVYPAQGVGKVERIETQEIGGVATELIIVRILSNNVTLMVPVKNARNVGLRGV- 60 Query: 74 EAHFVERALKL-VRGKARVKRT-----MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 + E+A ++ V + R T W+RR +EY K+ S DL +A V+++L Sbjct: 61 --YTPEQADEIRVYLQDRTDFTGYSGQNWNRRYREYSEKLKSSDLRDVAYVLKELILIGK 118 Query: 128 QPEKSYSERQLYESALNRMVREIA 151 E S+ ER+L E A+ + E++ Sbjct: 119 DKELSFGERRLLEQAMGLISLELS 142 >gi|321314162|ref|YP_004206449.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|320020436|gb|ADV95422.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 158 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 77/145 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 67 DILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELEVIKGITE 151 >gi|145596771|ref|YP_001161068.1| transcription factor CarD [Salinispora tropica CNB-440] gi|159040183|ref|YP_001539436.1| CarD family transcriptional regulator [Salinispora arenicola CNS-205] gi|145306108|gb|ABP56690.1| transcriptional regulator, CarD family [Salinispora tropica CNB-440] gi|157919018|gb|ABW00446.1| transcriptional regulator, CarD family [Salinispora arenicola CNS-205] Length = 161 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R++ Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLRVAQGDLTVRVPAENAEIVGVREVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++ A + +V E+A ++ EA L++ L+ Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLT 159 >gi|325000162|ref|ZP_08121274.1| CarD family transcriptional regulator [Pseudonocardia sp. P1] Length = 163 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 84/161 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G ++++ V+ + + +++P +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRTIKGEEVQYLVLKVQQGDLTVRIPADNVEVVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANWEKLTSGDVNKVAEVVRDLWRREKDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+++ A +V E+A E A L++ L++ ++ Sbjct: 123 GEKRMLGKARQILVSELALAEGTDEERAEVLLDEVLATATA 163 >gi|50841843|ref|YP_055070.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] gi|289424334|ref|ZP_06426117.1| CarD-like protein [Propionibacterium acnes SK187] gi|289428813|ref|ZP_06430493.1| CarD-like protein [Propionibacterium acnes J165] gi|295129919|ref|YP_003580582.1| CarD-like protein [Propionibacterium acnes SK137] gi|50839445|gb|AAT82112.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] gi|289155031|gb|EFD03713.1| CarD-like protein [Propionibacterium acnes SK187] gi|289157814|gb|EFD06037.1| CarD-like protein [Propionibacterium acnes J165] gi|291375973|gb|ADD99827.1| CarD-like protein [Propionibacterium acnes SK137] gi|313765551|gb|EFS36915.1| CarD-like transcriptional regulator [Propionibacterium acnes HL013PA1] gi|313772900|gb|EFS38866.1| CarD-like transcriptional regulator [Propionibacterium acnes HL074PA1] gi|313793078|gb|EFS41145.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA1] gi|313802474|gb|EFS43696.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA2] gi|313806489|gb|EFS44996.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA2] gi|313811040|gb|EFS48754.1| CarD-like transcriptional regulator [Propionibacterium acnes HL083PA1] gi|313814459|gb|EFS52173.1| CarD-like transcriptional regulator [Propionibacterium acnes HL025PA1] gi|313815048|gb|EFS52762.1| CarD-like transcriptional regulator [Propionibacterium acnes HL059PA1] gi|313817358|gb|EFS55072.1| CarD-like transcriptional regulator [Propionibacterium acnes HL046PA2] gi|313821898|gb|EFS59612.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA1] gi|313824206|gb|EFS61920.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA2] gi|313826574|gb|EFS64288.1| CarD-like transcriptional regulator [Propionibacterium acnes HL063PA1] gi|313828758|gb|EFS66472.1| CarD-like transcriptional regulator [Propionibacterium acnes HL063PA2] gi|313831803|gb|EFS69517.1| CarD-like transcriptional regulator [Propionibacterium acnes HL007PA1] gi|313834653|gb|EFS72367.1| CarD-like transcriptional regulator [Propionibacterium acnes HL056PA1] gi|313840116|gb|EFS77830.1| CarD-like transcriptional regulator [Propionibacterium acnes HL086PA1] gi|314915809|gb|EFS79640.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA4] gi|314917081|gb|EFS80912.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA1] gi|314921357|gb|EFS85188.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA3] gi|314922287|gb|EFS86118.1| CarD-like transcriptional regulator [Propionibacterium acnes HL001PA1] gi|314926712|gb|EFS90543.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA3] gi|314931320|gb|EFS95151.1| CarD-like transcriptional regulator [Propionibacterium acnes HL067PA1] gi|314954856|gb|EFS99262.1| CarD-like transcriptional regulator [Propionibacterium acnes HL027PA1] gi|314958792|gb|EFT02894.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA1] gi|314961081|gb|EFT05182.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA2] gi|314964491|gb|EFT08591.1| CarD-like transcriptional regulator [Propionibacterium acnes HL082PA1] gi|314965395|gb|EFT09494.1| CarD-like transcriptional regulator [Propionibacterium acnes HL082PA2] gi|314969590|gb|EFT13688.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA1] gi|314974656|gb|EFT18751.1| CarD-like transcriptional regulator [Propionibacterium acnes HL053PA1] gi|314977148|gb|EFT21243.1| CarD-like transcriptional regulator [Propionibacterium acnes HL045PA1] gi|314980436|gb|EFT24530.1| CarD-like transcriptional regulator [Propionibacterium acnes HL072PA2] gi|314982506|gb|EFT26599.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA3] gi|314985754|gb|EFT29846.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA1] gi|314987277|gb|EFT31368.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA2] gi|314989179|gb|EFT33270.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA3] gi|315078494|gb|EFT50525.1| CarD-like transcriptional regulator [Propionibacterium acnes HL053PA2] gi|315082043|gb|EFT54019.1| CarD-like transcriptional regulator [Propionibacterium acnes HL078PA1] gi|315082817|gb|EFT54793.1| CarD-like transcriptional regulator [Propionibacterium acnes HL027PA2] gi|315086173|gb|EFT58149.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA3] gi|315087758|gb|EFT59734.1| CarD-like transcriptional regulator [Propionibacterium acnes HL072PA1] gi|315091050|gb|EFT63026.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA4] gi|315094138|gb|EFT66114.1| CarD-like transcriptional regulator [Propionibacterium acnes HL060PA1] gi|315097488|gb|EFT69464.1| CarD-like transcriptional regulator [Propionibacterium acnes HL038PA1] gi|315099939|gb|EFT71915.1| CarD-like transcriptional regulator [Propionibacterium acnes HL059PA2] gi|315101748|gb|EFT73724.1| CarD-like transcriptional regulator [Propionibacterium acnes HL046PA1] gi|315104787|gb|EFT76763.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA2] gi|315106406|gb|EFT78382.1| CarD-like transcriptional regulator [Propionibacterium acnes HL030PA1] gi|315110296|gb|EFT82272.1| CarD-like transcriptional regulator [Propionibacterium acnes HL030PA2] gi|327329340|gb|EGE71100.1| transcriptional regulator, CarD family [Propionibacterium acnes HL103PA1] gi|327331426|gb|EGE73165.1| transcriptional regulator, CarD family [Propionibacterium acnes HL096PA2] gi|327333413|gb|EGE75133.1| transcriptional regulator, CarD family [Propionibacterium acnes HL096PA3] gi|327334936|gb|EGE76647.1| transcriptional regulator, CarD family [Propionibacterium acnes HL097PA1] gi|327445569|gb|EGE92223.1| CarD-like transcriptional regulator [Propionibacterium acnes HL013PA2] gi|327447189|gb|EGE93843.1| CarD-like transcriptional regulator [Propionibacterium acnes HL043PA1] gi|327449777|gb|EGE96431.1| CarD-like transcriptional regulator [Propionibacterium acnes HL043PA2] gi|327454626|gb|EGF01281.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA3] gi|327456698|gb|EGF03353.1| CarD-like transcriptional regulator [Propionibacterium acnes HL083PA2] gi|327457026|gb|EGF03681.1| CarD-like transcriptional regulator [Propionibacterium acnes HL092PA1] gi|328755681|gb|EGF69297.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA1] gi|328756461|gb|EGF70077.1| CarD-like transcriptional regulator [Propionibacterium acnes HL025PA2] gi|328758809|gb|EGF72425.1| CarD-like transcriptional regulator [Propionibacterium acnes HL020PA1] gi|328761841|gb|EGF75353.1| transcriptional regulator, CarD family [Propionibacterium acnes HL099PA1] gi|332674759|gb|AEE71575.1| putative transcriptional regulator [Propionibacterium acnes 266] Length = 161 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R + Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E +++R + + WSRR + K++SG+++ +AEVVRDL R + S Sbjct: 63 VDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +++ A +++ L+S Sbjct: 123 AGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161 >gi|301056223|ref|YP_003794434.1| CarD-like transcriptional regulator [Bacillus anthracis CI] gi|300378392|gb|ADK07296.1| CarD-like transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 159 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 2 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 62 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 122 SEKQMLDNARKMMISEVALVQNVSEHQA 149 >gi|52140791|ref|YP_086042.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|222098186|ref|YP_002532243.1| transcriptional regulator, card family [Bacillus cereus Q1] gi|228917367|ref|ZP_04080920.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229032373|ref|ZP_04188344.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|229198880|ref|ZP_04325571.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|51974260|gb|AAU15810.1| transcriptional regulator, CarD family [Bacillus cereus E33L] gi|221242244|gb|ACM14954.1| transcriptional regulator, CarD family [Bacillus cereus Q1] gi|228584583|gb|EEK42710.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|228728936|gb|EEL79941.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228842294|gb|EEM87389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 164 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQA 154 >gi|238061419|ref|ZP_04606128.1| CarD family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|330470463|ref|YP_004408206.1| transcriptional regulator, card family protein [Verrucosispora maris AB-18-032] gi|237883230|gb|EEP72058.1| CarD family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|328813434|gb|AEB47606.1| transcriptional regulator, card family protein [Verrucosispora maris AB-18-032] Length = 161 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYP HG I I+ + + G ++ V+ + + ++VP A +G+R++ Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEPKQYLVLRVAQGDLTVRVPAENAEIVGVREVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++ A + +V E+A ++ EA L++ L+ Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLT 159 >gi|49481535|ref|YP_038761.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479850|ref|YP_897001.1| CarD family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196032819|ref|ZP_03100232.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196040853|ref|ZP_03108151.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|196043838|ref|ZP_03111075.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|218905945|ref|YP_002453779.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225866704|ref|YP_002752082.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|228929769|ref|ZP_04092786.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936026|ref|ZP_04098836.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948465|ref|ZP_04110747.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093818|ref|ZP_04224917.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|229124284|ref|ZP_04253475.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|229186972|ref|ZP_04314126.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|49333091|gb|AAT63737.1| transcriptional regulator, CarD family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118419075|gb|ABK87494.1| transcriptional regulator, CarD family [Bacillus thuringiensis str. Al Hakam] gi|195994248|gb|EDX58203.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196025174|gb|EDX63844.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|196028307|gb|EDX66916.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|218538565|gb|ACK90963.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225788519|gb|ACO28736.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|228596526|gb|EEK54192.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|228659185|gb|EEL14834.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|228689703|gb|EEL43511.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|228811224|gb|EEM57563.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823794|gb|EEM69616.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829948|gb|EEM75568.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 164 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SE+Q+ ++A M+ E+A V ++SE +A Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQA 154 >gi|225620858|ref|YP_002722116.1| transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225215678|gb|ACN84412.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 194 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 71/138 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 2 YKLNTYVVYPMYGICKVVGISDNKVNSNLVECYVLECESENITLKVPINRVKEYRIRKII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L +++ K W R QE + K+ SGD+ EV R L + E S Sbjct: 62 SKAEADNLLNILQTKPHDIENNWKIRYQENEEKLRSGDIKDTIEVARSLFTRNKLKELSA 121 Query: 134 SERQLYESALNRMVREIA 151 SE++LYE A +V EI+ Sbjct: 122 SEKRLYEKAYMFIVNEIS 139 >gi|150016433|ref|YP_001308687.1| CarD family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902898|gb|ABR33731.1| transcriptional regulator, CarD family [Clostridium beijerinckii NCIMB 8052] Length = 159 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP G+GT+ I+ + +G E+ ++ + + + +P KA + +RK+ Sbjct: 2 FLIGDKVVYPMQGIGTVERIENKIFSGNTKEYIIVKITSNNLEIMIPSDKASNSNLRKVC 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSR-RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L + K+ S+ R Q KI SG L AEVV DL + + S Sbjct: 62 DNSTLDHILLTLENKSSEFELASSKERYQANAKKIRSGLLKDSAEVVYDLILMNKKKSLS 121 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+QL+ +A +V E++ + +ISE EA + + +NL+ Sbjct: 122 SSEKQLFNTAYKFLVEEVSVIKNISEIEATSFLNLNLN 159 >gi|332970720|gb|EGK09700.1| CarD family transcriptional regulator [Desmospora sp. 8437] Length = 168 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 3/168 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G I I+E+E+ G ++V+ M + +P+ K IG+R++ Sbjct: 2 FNIGDKVVYPMHGAGIIEAIEEKEILGESQRYYVMRMPVGDMKVMIPMSKVDSIGLREVV 61 Query: 74 EAHFVERAL-KLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + + +L G A V W+RR + K+ SGD+ +A+VVR L D + S Sbjct: 62 DEKTISEVIERLANGSAEVSSN-WNRRYRANLDKMKSGDIHDLADVVRCLMLRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI-EVNLSSKSSKTEKS 179 ER++ ++A ++ E+ + E +A L+ E+ LS + E++ Sbjct: 121 TGERKMLDNARQILISELVLAKEMEESQAFGLLDEIILSESKPRVERA 168 >gi|300870668|ref|YP_003785539.1| CarD family transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300688367|gb|ADK31038.1| transcriptional regulator, CarD family [Brachyspira pilosicoli 95/1000] Length = 191 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 71/138 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 2 YKVNSYVVYPMYGICKVIGIADNKVNSSVVECYVLECEGENITLKVPINRVKEYRIRKII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E L L++ K W R QE + K+ SG++ EV R L + E S Sbjct: 62 SKAEAENFLNLLQTKPHDIENNWKIRYQENEEKLRSGEIKDTIEVARSLFTRNKLKELSA 121 Query: 134 SERQLYESALNRMVREIA 151 SE++LYE A +V EI+ Sbjct: 122 SEKRLYEKAYMFIVNEIS 139 >gi|38234538|ref|NP_940305.1| putative CarD-like transcriptional factor [Corynebacterium diphtheriae NCTC 13129] gi|38200801|emb|CAE50505.1| Putative CarD-like transcriptional factor [Corynebacterium diphtheriae] Length = 193 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 DDDGLQKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 E+++ A +V E+A + E + E L+ + E+ +EN+ Sbjct: 123 GEKRMLAKARQVLVGELALAENKDEKQT----EEILAQVDATIERHRAENK 169 >gi|237784959|ref|YP_002905664.1| putative transcription factor [Corynebacterium kroppenstedtii DSM 44385] gi|237757871|gb|ACR17121.1| putative transcription factor [Corynebacterium kroppenstedtii DSM 44385] Length = 196 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 76/148 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I + +++++ G +++ V+ + + ++VP A +G+R + Sbjct: 3 FNIGDTVVYPHHGAAVIEKKEQRQIKGETVDYLVLKVHQGDLTVRVPEKNAESVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + ++R + WSRR + ++ SGD+ +AEVVRDL R D S Sbjct: 63 GEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 E+++ A +V E+A + + +A Sbjct: 123 GEKRMLAKARQVLVGELALADGTDDAKA 150 >gi|297566998|ref|YP_003685970.1| CarD family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851447|gb|ADH64462.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM 9946] Length = 163 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 2/148 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F GE +VYPAHG G I + E+ V G K ++V+ + VPVG A +R Sbjct: 2 FAIGEAVVYPAHGAGRIVGLDERSVLGEKRIYYVLELLGQAHTVMVPVGVA-QACLRPPL 60 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VER L ++ + ++ T+W +R +E + + SGD +A + L R S Sbjct: 61 AGAAVERLLDELKTEVKLP-TIWMQRHREEEKILASGDPYQVAALAGTLFRYQRGKTLSL 119 Query: 134 SERQLYESALNRMVREIAAVNSISEPEA 161 SER ++E AL + E+A + +S EA Sbjct: 120 SERGVFEKALAMLASELALIWGVSLDEA 147 >gi|89893788|ref|YP_517275.1| hypothetical protein DSY1042 [Desulfitobacterium hafniense Y51] gi|219668161|ref|YP_002458596.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333236|dbj|BAE82831.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538421|gb|ACL20160.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 161 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ I YP +G G I IKE+EV G K ++ + K+ + +P+ + DIG+R++ Sbjct: 2 FQVGDKIFYPLYGAGIIEAIKEKEVLGKKQFYYFLNIPHIKLKIMIPIERTHDIGIREVV 61 Query: 74 EAHFVERAL-KLVRGKARVKRTMWSRRAQEYD-AKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ L L G R ++ + +KI +GD+ EV+RDL R + Sbjct: 62 KPDVLQHVLDDLYNGTTDPLSDNNQRYRRDMNKSKIKTGDIYKGTEVIRDLMRKSKVKKL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 S ++ + E+AL + E V + + +A++L+ Sbjct: 122 SAEDKAMLENALQILTSEFIQVRGVCKEQAVHLL 155 >gi|325478954|gb|EGC82056.1| CarD-like protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 159 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 76/153 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K D+ +R + Sbjct: 2 FKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINDMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++ LK++ W+ R ++ + +GD+ IA +VR+L D S Sbjct: 62 TKEEGDKVLKILDEDPSDMSENWTTRYRQNQEILKTGDVYEIARMVRNLAILDKDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L + + E+ S+ + EA +I+ Sbjct: 122 TEKKLLNRSRRILASELVMAGSLDKEEAEAMID 154 >gi|56962605|ref|YP_174331.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] gi|56908843|dbj|BAD63370.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] Length = 153 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 76/145 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E ++ K ++++I + M + +P K ++ +R ++ Sbjct: 2 FQIGDNIVYPMHGAGVIEAIEEIDLLEEKQQYYIIKMSINNMKVMIPTSKIVNSRIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + W +R + KI G++ AEVVRDL R + + Sbjct: 62 DILAINHIIHIFQHGESDTLLPWKQRYKVNADKIKMGEMQEGAEVVRDLRRIKKEKTLNT 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE++L ++A ++ E+ V I++ Sbjct: 122 SEKELLDNAYEFLLSELEVVKGITD 146 >gi|325845929|ref|ZP_08169127.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481835|gb|EGC84867.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 159 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 2 FKIGDKIVYPMHGAGVIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E+ L ++ K W+ R +E + +GD+ IA +VRDL D S Sbjct: 62 SKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L A M E+ S+ + +A +I+ Sbjct: 122 TEKKLLNRARRIMASELVMSGSLEKDQAEKMID 154 >gi|325294895|ref|YP_004281409.1| transcriptional regulator, CarD family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065343|gb|ADY73350.1| transcriptional regulator, CarD family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 163 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ + P HGVG + +E+EV G K+ +F I+ M + VP + G+R + Sbjct: 2 FKIGDKVACPPHGVGIVEGKEEREVGGKKVIYFRISLVGKSMSILVPEESIENSGIRPVL 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E + W+ R + ++ +GD+ +A VVR+L + E SY Sbjct: 62 SEESIEEIFNYLSEIPTNISEKWTVRHRLNVDRLKTGDIKELATVVRNLSYRSKEKELSY 121 Query: 134 SERQLYESALNRMVREIAAVNSISEP 159 SE++++E A ++ EIA S+ EP Sbjct: 122 SEKRMFEEAFGKLAEEIAL--SLGEP 145 >gi|226311543|ref|YP_002771437.1| hypothetical protein BBR47_19560 [Brevibacillus brevis NBRC 100599] gi|226094491|dbj|BAH42933.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 167 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 77/152 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ + YP HG G I ++E+E G K ++V+ ++ + VPV K +G+RK+ Sbjct: 2 FLVGDKVFYPIHGAGVIEAMEEKEFLGEKHLYYVLNMSLKELNIMVPVEKMSALGIRKVV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 EA +E L + R ++R + + K+ SGD+ +EV+RDL + Sbjct: 62 EADILENVLAAMLEGQRDTALNAAQRYKLHTEKMKSGDIYEQSEVIRDLVGMSKEKVLGT 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLI 165 S++ + ++A ++ EI V + +A ++ Sbjct: 122 SDKVMLDNAQQLLISEIELVKDVDTQQATEML 153 >gi|212696984|ref|ZP_03305112.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM 7454] gi|212676072|gb|EEB35679.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM 7454] Length = 159 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 2 FKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E+ L ++ K W+ R +E + +GD+ IA +VRDL D S Sbjct: 62 SKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L A M E+ S+ + +A +I+ Sbjct: 122 TEKKLLNRARRIMASELVMSGSLEKDQAEKMID 154 >gi|257065690|ref|YP_003151946.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM 20548] gi|256797570|gb|ACV28225.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM 20548] Length = 159 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 77/153 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K ++ +R + Sbjct: 2 FKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINEMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + LK++ W+ R ++ + +GD+ IA++VR+L D+ S Sbjct: 62 TKEEGDEVLKILDDDPSDMSNNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDNDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L + + E+ S+ + EA +I+ Sbjct: 122 TEKKLLNRSRRILASELVMAGSLKKEEAEAMID 154 >gi|256546065|ref|ZP_05473418.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398182|gb|EEU11806.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 159 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 2 FKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKANINKMNIRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 E L ++ + + W+ R +E + +GD+ IA +VRDL D S Sbjct: 62 SKKEGEEILAILEQDPKDLNSNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L A M E+ S+ + +A +I+ Sbjct: 122 TEKKLLNRARRIMASELVMSGSLEKDDAEKMID 154 >gi|150016777|ref|YP_001309031.1| CarD family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903242|gb|ABR34075.1| transcriptional regulator, CarD family [Clostridium beijerinckii NCIMB 8052] Length = 165 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP+ G+G I I+E+E+ G K++ ++I + M L +P+ A +R +S Sbjct: 2 FNIGDKVVYPSQGIGIIDVIEEKELKGEKIKCYIIHLINNTMKLTLPISAANTFNIRLVS 61 Query: 74 EAHFVERALK----LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + +E +LK + + + + R K+ SG EV+ DL + Sbjct: 62 DIKTLENSLKHLDRFMTEAEKFSKINYKERRNISKIKMKSGTFDEFIEVIFDLTQLKRWH 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + SE+Q+ +V EIA ++ EA L++++++ KS Sbjct: 122 SLNSSEKQMLNHIKKIVVEEIAQAKCLTSDEASELLDISMNLKS 165 >gi|157691253|ref|YP_001485715.1| transcription regulator CarD [Bacillus pumilus SAFR-032] gi|157680011|gb|ABV61155.1| CarD family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 153 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 74/147 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVIKMSISHMKVMIPTRKISGSRIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W R KI +GD+ AEVVRDL R + + Sbjct: 62 DLLALNNVMHVFQHGESDQLLTWKERHTINTNKIKTGDIQDGAEVVRDLMRMKKEKALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 SE+++ + A ++ E+ + I+E + Sbjct: 122 SEKKMLDEAHEFLLSELEVIEGITEKQ 148 >gi|296126550|ref|YP_003633802.1| CarD family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018366|gb|ADG71603.1| transcriptional regulator, CarD family [Brachyspira murdochii DSM 12563] Length = 191 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 72/138 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 2 YKLNTYVVYPMYGICKVIGISDSKVNSNLVECYVLECESENITLKVPINRVKEYRIRKII 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + +++ K + W R QE + K+ SG++ EV R L + E S Sbjct: 62 SKAEADELINVLQTKPQDIENNWKIRYQENEEKLRSGNIKDTIEVARSLFTRNKLKELSA 121 Query: 134 SERQLYESALNRMVREIA 151 SE++LYE A +V EI+ Sbjct: 122 SEKRLYEKAYMFIVNEIS 139 >gi|227485949|ref|ZP_03916265.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172] gi|227235994|gb|EEI86009.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172] Length = 160 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 76/153 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I +++ E G + E++++ +M + +P D +R + Sbjct: 3 FKVGDKIVYPMHGAGVIDAVEKIEFMGEEREYYILKMPIGEMDISIPADNMKDANIRFII 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 L ++ K + W++R ++ + +GD+ IA++VR+L DS S Sbjct: 63 SKEEGLEVLAILDDKPTEMNSNWTKRYRDNQEILKTGDIFEIAKMVRNLAILDSDKGLST 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +E++L A + E+ S+ + EA +I+ Sbjct: 123 TEKKLLNRARRILASELVMAGSLEKEEAEKMID 155 >gi|332298572|ref|YP_004440494.1| transcriptional regulator, CarD family [Treponema brennaborense DSM 12168] gi|332181675|gb|AEE17363.1| transcriptional regulator, CarD family [Treponema brennaborense DSM 12168] Length = 217 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 72/151 (47%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + F + IVYP+ GVG ITEI E++ L ++VI + M + VP Sbjct: 1 MVYYMTMSDTKMTFEVNQKIVYPSQGVGKITEITEKKFKDNVLPYYVIYLEVSDMTVMVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V + ++G+R + +A++++ + + W R Q + G + IA +VR Sbjct: 61 VNRVEELGIRAIVSQQEALQAIEMMGEEVEPVTSDWKLRYQMNLDLLKKGSVSDIATIVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIA 151 L+ E ER+LY+SA + EI+ Sbjct: 121 CLYHRSKVKELPILERKLYDSAKKLLEDEIS 151 >gi|153005645|ref|YP_001379970.1| CarD family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029218|gb|ABS26986.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. Fw109-5] Length = 364 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 8/152 (5%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 R G +VYP GV + ++E+++AG KL+ + ++D + VP K IG+R+++ Sbjct: 29 LRPGNRVVYPNQGVCEVVGVEEKDIAGQKLQLVRMRREEDGAAVLVPRNKVPSIGLRRVA 88 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH---RTDSQPE 130 +E + + W R ++ ++ +G ++ +AEVV+ LH R P Sbjct: 89 TGEQIEGVFHFLAAQFEDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRIRPLPA 148 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAI 162 K ER+ Y++A + +V E+A S+ P A+ Sbjct: 149 K---EREQYDNARHLLVHEVAV--SLGVPPAL 175 >gi|296332858|ref|ZP_06875318.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673204|ref|YP_003864876.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150138|gb|EFG91027.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411448|gb|ADM36567.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 158 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HGVG I I+E+E+ G K +++VI M + +P K + +R ++ Sbjct: 7 FQIGDNIVYPMHGVGIIEAIEEKEILGKKQQYYVIKMTISNMQVMIPTRKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R KI +G++ AEVVRDL R + + Sbjct: 67 DIRALKHIIHIFQHGESDRLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ ++A ++ E+ + I+E Sbjct: 127 SEKKMLDNAYEFLISELEVIKGITE 151 >gi|313680694|ref|YP_004058433.1| CarD family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313153409|gb|ADR37260.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM 14977] Length = 167 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 1/139 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF G+ +VYPA G G I EI E+EV G + ++VI + + VPV KA +G+R Sbjct: 5 GFNVGDPVVYPAQGGGYIREIAEREVMGERNTYYVIELLRKPGTIMVPVEKAERLGLRP- 63 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A AL G+AR + W R +E ++ D + +A ++ LHR S Sbjct: 64 PLAGADRDALVRALGEARDLASGWPARQREIGRALSESDPLELARMLASLHRRHQLRPLS 123 Query: 133 YSERQLYESALNRMVREIA 151 +E Q Y + + E+A Sbjct: 124 GTEHQQYRELVGILSEELA 142 >gi|111018698|ref|YP_701670.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1] gi|110818228|gb|ABG93512.1| probable transcriptional regulator, CarD family protein [Rhodococcus jostii RHA1] Length = 171 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +YP HG T+T++ + + E+ ++ + +++PV KA IG+R Sbjct: 6 GDIFLYPHHGSVTVTKLTTRMFNDLPTEYVQFEVAQNGLSIEIPVAKAESIGVRNAINND 65 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKSYSE 135 V R ++RG + WSRR + K+ G + ++EV+RDL R+ +P + + Sbjct: 66 EVGRVFDILRGPTVDDPSNWSRRFKANQEKLTVGGIFTVSEVIRDLMTRSQVKPLSAGEK 125 Query: 136 RQLYESALNRMVREIA 151 RQL E A+ ++ E+ Sbjct: 126 RQL-EHAMQLVISELV 140 >gi|323141388|ref|ZP_08076279.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067] gi|322414137|gb|EFY04965.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067] Length = 161 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG I +I+ G ++++++ D M + VPV A +G+R + Sbjct: 2 FAMGDRVVYPLHGGAIIKDIEAHIQDGETVKYYILQMLFDNMTVSVPVENAEKLGLRYIG 61 Query: 74 EAH---FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + ++ L V VK W+RR Q Y KI SG + +A + + L + + + Sbjct: 62 DDETLAIIQNTLHEVPDVQTVKAISWNRRFQLYMQKIKSGSVAEVARIFKILTILERRKK 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S ER+L S + EI + + +A N +E Sbjct: 122 ISVGERRLLHSTKQILQSEIMLIKDVDAEKAGNWLE 157 >gi|228923471|ref|ZP_04086756.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836197|gb|EEM81553.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 81/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L+ AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLLDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V ++SE +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQ 159 >gi|187935638|ref|YP_001884929.1| CarD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187723791|gb|ACD25012.1| transcriptional regulator, CarD family [Clostridium botulinum B str. Eklund 17B] Length = 163 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVYP+ GVG I I E G ++ I + M L +PV + D+ +R +S Sbjct: 2 FNIGDKIVYPSQGVGIIELIGEMLFKGEIQNYYKIHIFNNNMTLTLPVNRVEDLNIRLVS 61 Query: 74 EAHFVERALKLVRGKA----RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 ++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q Sbjct: 62 DSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVKEQH 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 + SE+ + +V EI+ ++S +A +L+ + Sbjct: 122 SLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNL 159 >gi|226360810|ref|YP_002778588.1| hypothetical protein ROP_13960 [Rhodococcus opacus B4] gi|226239295|dbj|BAH49643.1| hypothetical protein [Rhodococcus opacus B4] Length = 169 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +YP HG T+T++ + + E+ + + +++PV KA +G+R Sbjct: 6 GDIFLYPHHGSVTVTKLTTRMFKDLPTEYVQFEVAQTGLSIEIPVAKAEALGVRNAISND 65 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKSYSE 135 VER ++RG + WSRR + K+ G + ++EV+RDL R +P + + Sbjct: 66 EVERVFDILRGPTVDDPSNWSRRYKANQEKLTVGGIFTVSEVIRDLMTRAQEKPLSAGEK 125 Query: 136 RQLYESALNRMVREI 150 RQL E A+ ++ E+ Sbjct: 126 RQL-EHAMQLVISEL 139 >gi|117927289|ref|YP_871840.1| CarD family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647752|gb|ABK51854.1| transcriptional regulator, CarD family [Acidothermus cellulolyticus 11B] Length = 160 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 82/158 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R + Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVINGQEKTYLVLKVAQGDLTVRVPAENAEFVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D S Sbjct: 63 SQDGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRDRGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A +E +A +++ L S Sbjct: 123 GEKRMLAKARQILVSELALAEGTNEDKAEAILDEVLGS 160 >gi|297624760|ref|YP_003706194.1| CarD family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165940|gb|ADI15651.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM 17093] Length = 165 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++VYP+ G G + EI + V G + E+ I+F + M + VP+ K ++G+R Sbjct: 2 FKVGDNVVYPSQGAGRVDEITTRVVLGERHEYLKISFVRGDMDVLVPLKKGEEVGLRHTV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L + T W R + + GD A+A ++ L + D + + Sbjct: 62 ALAEVGELLAAIAHSDLSLPTQWPPRHRAEQDILAGGDAYALARLIGVLAQRDLEKGLAA 121 Query: 134 SERQLYESALNRMVREIAAVNSIS 157 +ER++ E A + E+A V SIS Sbjct: 122 TEREMLEGAKAMLASELAVVQSIS 145 >gi|149919813|ref|ZP_01908290.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] gi|149819420|gb|EDM78851.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 1/108 (0%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLI 113 M L VP+ A +G+R L VE +++R + ++ W+RR +EY KI +G L Sbjct: 9 MTLMVPMSNADSVGLRNLITNEQVEEVYEVLRKRGEKISTATWNRRHREYMDKIRTGSLA 68 Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 IA V+RDL+ + SY ER + E+A +++E+A V +E E Sbjct: 69 KIATVLRDLYLLRGDKDLSYGERNMLETARALLIQELALVKEKTEDEV 116 >gi|188589570|ref|YP_001920088.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|251778617|ref|ZP_04821537.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499851|gb|ACD52987.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|243082932|gb|EES48822.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 163 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVYP+ GVG I I E G ++ I + M L +P+ + D+ +R +S Sbjct: 2 FNIGDKIVYPSQGVGIIELIGEMLFKGEVQNYYKIHIFNNNMTLTLPINRVDDLNIRLVS 61 Query: 74 EAHFVERALKLVRGKA----RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 ++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q Sbjct: 62 DSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVREQH 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 + SE+ + +V EI+ ++S +A +L+ + Sbjct: 122 SLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNL 159 >gi|194015928|ref|ZP_03054543.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012283|gb|EDW21850.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 72/145 (49%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R ++ Sbjct: 2 FQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVINMSISHMKVMIPTRKISGSRIRPVT 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W R KI +G + AEVVRDL R + + Sbjct: 62 DILALNNVMDIFQHGESDQIPTWKERHTINTNKIKTGSIQDGAEVVRDLMRMKKEKALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISE 158 SE+++ + A ++ E+ + I+E Sbjct: 122 SEKKMLDDAHEFLLSELEVIKGITE 146 >gi|218235392|ref|YP_002369513.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228960989|ref|ZP_04122619.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|229112178|ref|ZP_04241720.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|229152915|ref|ZP_04281097.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|218163349|gb|ACK63341.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228630528|gb|EEK87175.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|228671294|gb|EEL26596.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|228798706|gb|EEM45689.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] Length = 164 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V ++SE +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQ 159 >gi|319790303|ref|YP_004151936.1| transcriptional regulator, CarD family [Thermovibrio ammonificans HB-1] gi|317114805|gb|ADU97295.1| transcriptional regulator, CarD family [Thermovibrio ammonificans HB-1] Length = 163 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ + YP HGVG I + + V G ++ ++ I M + +P G+R + Sbjct: 2 FKVGDKVAYPPHGVGVIESTEVRVVGGKEVTYYRITLLGKNMSILIPEVGLESSGVRPVL 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E + K W+ R + ++ +G++ +A VVR+L E SY Sbjct: 62 SEEEIEEVFSYLAEKPTNISEKWTIRHRLNVDRLKTGNIRELATVVRNLSYRSKDKELSY 121 Query: 134 SERQLYESALNRMVREIAAVNSISEP 159 SE++++E A +++ EIA S+ EP Sbjct: 122 SEKRMFEEAFSKLAEEIAL--SLGEP 145 >gi|303238352|ref|ZP_07324887.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus CD2] gi|302594056|gb|EFL63769.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus CD2] Length = 159 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 75/147 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ IVYP HG G I I+E+E+ G K ++V+ M + +P IG+R++ Sbjct: 2 YNVGDRIVYPMHGAGIIESIEEREILGSKQSYYVVRIPIGDMKVMIPTKNVTGIGIREVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +R ++ + + W++R +E KI SG++ +A+VVR L + + S Sbjct: 62 SERDADRVFSVLGAENNSANSNWNKRYRENMVKIKSGNIYEVADVVRSLMVREKEKGLST 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPE 160 ER++ SA ++ E+ +++ E Sbjct: 122 GERKMLSSAKQILISELVLAKNMNAIE 148 >gi|30022787|ref|NP_834418.1| CarD family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229129995|ref|ZP_04258959.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|29898346|gb|AAP11619.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|228653439|gb|EEL09313.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] Length = 164 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V ++SE +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQ 159 >gi|260881580|ref|ZP_05404736.2| transcriptional regulator, CarD family [Mitsuokella multacida DSM 20544] gi|260848409|gb|EEX68416.1| transcriptional regulator, CarD family [Mitsuokella multacida DSM 20544] Length = 166 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP HG G I+ I+ EV G ++V+ M + +P A ++G+R + Sbjct: 4 LQIGDKVVYPMHGAGVISGIENCEVLGEGKSYYVLEMPLGNMKVMIPTDNADNVGLRDVI 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V+ +++ + + W++R ++ SGD+ +A V R+L D + S Sbjct: 64 PQQKVDEVREVLEEEPEKPKGSWNKRFHANLDRMKSGDICDVAAVARNLILQDRRRHISS 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ER+L + A +V E+ + E N + LS+ + Sbjct: 124 GERRLLDLAKQILVSELVYACDKTPKEVENWLTSVLSANA 163 >gi|328949054|ref|YP_004366391.1| CarD family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449378|gb|AEB15094.1| transcriptional regulator, CarD family [Treponema succinifaciens DSM 2489] Length = 206 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP+ GVG ITEI +++ ++ I + M + VPV ++ D+G+R + Sbjct: 8 FSVNQKVVYPSQGVGKITEIFKKDFNNEPTYYYKIYLEVSDMNVMVPVSRSKDLGIRAIV 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + AL + + W R Q + G + IA +VR L+ E Sbjct: 68 SKDEAQTALNSISDDFEPPTSDWKLRYQMNLDLLKKGTIGDIAAIVRCLYHRSKVKELPI 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 ER+LY++A + EIA IS E ++ L K EK Sbjct: 128 LERKLYDNAKKLLEDEIAEAFGISNKEVEAMLHEKLEPLGLKIEK 172 >gi|239621794|ref|ZP_04664825.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514985|gb|EEQ54852.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 179 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 33 IKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV 91 I E+ V G+ E+ ++ D + + VPV A +G+R + A V + ++R Sbjct: 4 ITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTPIIE 63 Query: 92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK-SYSERQLYESALNRMVREI 150 K WSRR + KI +GD+ IAEVVRDL + D S E+++ A + EI Sbjct: 64 KEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILTSEI 123 Query: 151 AAVNSISEPEAINLIEVNLS---SKSSKTEKSTSENQDKAA 188 A I E EA L++VNL ++ + T+E ++ AA Sbjct: 124 ALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAAA 164 >gi|121535694|ref|ZP_01667498.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans Nor1] gi|121305725|gb|EAX46663.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans Nor1] Length = 164 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 67/136 (49%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +VYP HG G + ++E EV G K ++V+ M + +P + G+R + Sbjct: 4 VGDKVVYPMHGAGIVEALEEHEVLGKKQYYYVLTMFYGGMRVMIPQDQVGQSGLRAVVGE 63 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 + + +++ W+RR KI SG ++ +AEVVR+L + + S E Sbjct: 64 TEIAQVKEVLSASPEQDTGNWNRRINNSLTKIKSGSILEVAEVVRNLMKQEVTRRLSTGE 123 Query: 136 RQLYESALNRMVREIA 151 R+L ++A ++ E+ Sbjct: 124 RRLLDTAKQILISELV 139 >gi|228941895|ref|ZP_04104439.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974826|ref|ZP_04135389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981418|ref|ZP_04141717.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228778301|gb|EEM26569.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228784886|gb|EEM32902.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817728|gb|EEM63809.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942500|gb|AEA18396.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 164 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMNQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +++E +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQ 159 >gi|229163710|ref|ZP_04291657.1| Transcriptional regulator, CarD [Bacillus cereus R309803] gi|228619772|gb|EEK76651.1| Transcriptional regulator, CarD [Bacillus cereus R309803] Length = 164 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL- 72 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTLRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + L+ +G++ + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLNDILLEFQQGESDTSLS-WKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 125 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V ++SE +A ++ Sbjct: 126 ASEKQMLDNARKMMISEVALVQNVSEHQATEFLQ 159 >gi|56963460|ref|YP_175191.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] gi|56909703|dbj|BAD64230.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] Length = 165 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG GTI E++E++V G +F++ F + L +P + G+RK+ Sbjct: 4 FKVGDKVVYPYHGAGTIQEVEEKDVLGETHLYFILHFPLVDITLMLPESRIEQSGLRKVI 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS- 132 + +E+ K ++ + S+ +++ + + +G +I A +V L + Q E+S Sbjct: 64 PSSDLEKVAKALQNGPDTPPST-SQFSRDTENLLKTGSIIDAAHLVSSLSK--KQAERSN 120 Query: 133 ---YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +R + A + E+ AV SE +A I+ NL Sbjct: 121 GLHIQDRHHLQKARQVLASELVAVQDFSEEQAYEFIDNNL 160 >gi|229099195|ref|ZP_04230127.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|229105347|ref|ZP_04235994.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229118208|ref|ZP_04247566.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228665255|gb|EEL20739.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228678059|gb|EEL32289.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|228684176|gb|EEL38122.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] Length = 164 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLNDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +SE +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQDVSEHQATEFLQ 159 >gi|206969561|ref|ZP_03230515.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228954994|ref|ZP_04117011.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147285|ref|ZP_04275636.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|229181033|ref|ZP_04308368.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|296505181|ref|YP_003666881.1| CarD family transcriptional regulator [Bacillus thuringiensis BMB171] gi|206735249|gb|EDZ52417.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228602590|gb|EEK60076.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|228636186|gb|EEK92665.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|228804721|gb|EEM51323.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|296326233|gb|ADH09161.1| CarD family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 164 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +++E +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQ 159 >gi|229048423|ref|ZP_04193990.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|228722938|gb|EEL74316.1| Transcriptional regulator, CarD [Bacillus cereus AH676] Length = 164 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +++E +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQ 159 >gi|325291324|ref|YP_004267505.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus DSM 8271] gi|324966725|gb|ADY57504.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus DSM 8271] Length = 162 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 2/161 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ I+YP HG+ I ++++E+ G + +++ K M + +PV KA IG+RK+ Sbjct: 2 FQVGDKILYPMHGICIIDAVEKKELFGQQELCYILNIQKANMKITIPVDKATKIGVRKVV 61 Query: 74 EAHFVERALKLVR-GKARVKRTMWSRRAQEYD-AKINSGDLIAIAEVVRDLHRTDSQPEK 131 +E L G R +E + K +G++ E++RDL R + + Sbjct: 62 GPEILENILNSFNLGDTDSNIFENQRYCKEINKKKFKTGNINQGTEIIRDLTRKSRRTKL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 + + ++A V E+ V ++ +A+ L++ L+SK Sbjct: 122 GQDDTNMLDNARRVFVSELMEVKGLALEQAVYLLDEALNSK 162 >gi|228910571|ref|ZP_04074385.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228849135|gb|EEM93975.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] Length = 164 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVER-ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L+ G+A + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGEADPSLS-WKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 125 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +++E +A ++ Sbjct: 126 ASEKQMLDNARKMMISEVALVQNVTEHQATEFLQ 159 >gi|75760847|ref|ZP_00740862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899872|ref|YP_002448283.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228903236|ref|ZP_04067369.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228967819|ref|ZP_04128833.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|229072221|ref|ZP_04205428.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|229076225|ref|ZP_04209192.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229081972|ref|ZP_04214463.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|229193002|ref|ZP_04319958.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|74491661|gb|EAO54862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545825|gb|ACK98219.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228590449|gb|EEK48312.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228701349|gb|EEL53844.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228706874|gb|EEL59080.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|228710878|gb|EEL62846.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228791869|gb|EEM39457.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228856410|gb|EEN00937.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 164 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMEQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A M+ E+A V +++E +A ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQ 159 >gi|134301075|ref|YP_001114571.1| CarD family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053775|gb|ABO51746.1| transcriptional regulator, CarD family [Desulfotomaculum reducens MI-1] Length = 155 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 14/157 (8%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK----VPVGKAIDIGM 69 F+ G+ + YP HG G I I+E+E+ G K ++V+ ++ +P+ +D+ + Sbjct: 2 FQIGDKVFYPMHGAGVIEAIEEKEILGNKQLYYVMQIRNMQVMFPMKSDIPLRPVVDLDI 61 Query: 70 RKLSEAHFVERALKL-VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 + F E AL L ++ R + M K+ SGD+ +V+RDL + Sbjct: 62 LDVLFTTFNEEALDLTLKPNQRYRSNM---------NKMKSGDIYQGVQVIRDLILMSKK 112 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + ++ + ++AL ++ E+ V I+E +A++L+ Sbjct: 113 RTLATGDKAMLDNALQILISELVLVKGITEEQAVDLV 149 >gi|163942446|ref|YP_001647330.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864643|gb|ABY45702.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] Length = 159 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 2 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGIRYIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 62 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A ++ Sbjct: 122 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQ 154 >gi|229135557|ref|ZP_04264340.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|229169450|ref|ZP_04297156.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228614008|gb|EEK71127.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228647899|gb|EEL03951.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] Length = 162 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 5 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGIRYIV 64 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 65 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A ++ Sbjct: 125 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQ 157 >gi|220918135|ref|YP_002493439.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955989|gb|ACL66373.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] Length = 404 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 76/161 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 30 LKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVA 89 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 90 TGAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPT 149 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E++ + A + I+ L + Sbjct: 150 KEREQYDNARHLLVHEVSVSLGVPPGLAEDYIDYALMPPAG 190 >gi|197123346|ref|YP_002135297.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173195|gb|ACG74168.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K] Length = 404 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 69/138 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 30 LKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVA 89 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 90 TGAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPT 149 Query: 134 SERQLYESALNRMVREIA 151 ER+ Y++A + +V E++ Sbjct: 150 KEREQYDNARHLLVHEVS 167 >gi|229013922|ref|ZP_04171049.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|229062401|ref|ZP_04199717.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228716872|gb|EEL68559.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228747392|gb|EEL97268.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 162 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 5 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMNQLQKSGIRYIV 64 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 65 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A ++ Sbjct: 125 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQ 157 >gi|111115179|ref|YP_709797.1| transcription factor, putative [Borrelia afzelii PKo] gi|216263817|ref|ZP_03435811.1| putative transcription factor [Borrelia afzelii ACA-1] gi|110890453|gb|ABH01621.1| transcription factor, putative [Borrelia afzelii PKo] gi|215979861|gb|EEC20683.1| putative transcription factor [Borrelia afzelii ACA-1] Length = 162 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKKFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|15594700|ref|NP_212489.1| transcription factor, putative [Borrelia burgdorferi B31] gi|195941293|ref|ZP_03086675.1| transcription factor, putative [Borrelia burgdorferi 80a] gi|216264671|ref|ZP_03436663.1| putative transcription factor [Borrelia burgdorferi 156a] gi|218249763|ref|YP_002374875.1| putative transcription factor [Borrelia burgdorferi ZS7] gi|223889019|ref|ZP_03623610.1| putative transcription factor [Borrelia burgdorferi 64b] gi|224533174|ref|ZP_03673774.1| putative transcription factor [Borrelia burgdorferi WI91-23] gi|224533714|ref|ZP_03674302.1| putative transcription factor [Borrelia burgdorferi CA-11.2a] gi|225549124|ref|ZP_03770099.1| putative transcription factor [Borrelia burgdorferi 94a] gi|226320426|ref|ZP_03795993.1| putative transcription factor [Borrelia burgdorferi 29805] gi|226321672|ref|ZP_03797198.1| putative transcription factor [Borrelia burgdorferi Bol26] gi|2688253|gb|AAC66731.1| transcription factor, putative [Borrelia burgdorferi B31] gi|215981144|gb|EEC21951.1| putative transcription factor [Borrelia burgdorferi 156a] gi|218164951|gb|ACK75012.1| putative transcription factor [Borrelia burgdorferi ZS7] gi|223885835|gb|EEF56934.1| putative transcription factor [Borrelia burgdorferi 64b] gi|224511901|gb|EEF82302.1| putative transcription factor [Borrelia burgdorferi WI91-23] gi|224513007|gb|EEF83370.1| putative transcription factor [Borrelia burgdorferi CA-11.2a] gi|225370350|gb|EEG99788.1| putative transcription factor [Borrelia burgdorferi 94a] gi|226232861|gb|EEH31614.1| putative transcription factor [Borrelia burgdorferi Bol26] gi|226234179|gb|EEH32893.1| putative transcription factor [Borrelia burgdorferi 29805] gi|312148240|gb|ADQ30899.1| transcription factor, putative [Borrelia burgdorferi JD1] gi|312149526|gb|ADQ29597.1| transcription factor, putative [Borrelia burgdorferi N40] Length = 162 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|330838625|ref|YP_004413205.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] gi|329746389|gb|AEB99745.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] Length = 163 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 1/149 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP HG G I+ I++ EV G ++V+ M + +P ++G+R + Sbjct: 2 LQVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIPTDNVDNMGLRDVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE +++ W++R ++ SGD+ +A V R+L D + S Sbjct: 62 PETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVARNLVLQDRLRKISS 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAI 162 ER+L + A +V E+ S S PE + Sbjct: 122 GERRLLDLARQIIVSELVYACSKS-PEEV 149 >gi|224534394|ref|ZP_03674972.1| putative transcription factor [Borrelia spielmanii A14S] gi|224514496|gb|EEF84812.1| putative transcription factor [Borrelia spielmanii A14S] Length = 162 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKKFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|255527262|ref|ZP_05394143.1| transcriptional regulator, CarD family [Clostridium carboxidivorans P7] gi|296187241|ref|ZP_06855637.1| CarD-like transcriptional regulator [Clostridium carboxidivorans P7] gi|255509047|gb|EET85406.1| transcriptional regulator, CarD family [Clostridium carboxidivorans P7] gi|296048112|gb|EFG87550.1| CarD-like transcriptional regulator [Clostridium carboxidivorans P7] Length = 158 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 71/139 (51%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 + + P +G G +T++++ + + ++ I D + L +P + +D +R ++ Sbjct: 6 QKVFVPNYGAGIMTKVEDSKSYDVNKKYVNIFILIDNINLYIPEDRLLDYRIRNITSKEN 65 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137 +++A +++ K + WS+R ++ + KI GD + EV+RDL+ S+ ER+ Sbjct: 66 LDKAFDIIKSKPQTIEKKWSKRYKKNNDKIKEGDFFQMCEVIRDLYYLKSKGTIPPGERR 125 Query: 138 LYESALNRMVREIAAVNSI 156 + + N + EIA + I Sbjct: 126 ILDKVENMVGSEIALLLGI 144 >gi|229019949|ref|ZP_04176742.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] gi|229026183|ref|ZP_04182547.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228735111|gb|EEL85742.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228741333|gb|EEL91540.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] Length = 164 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIINKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SE+Q+ ++A ++ E+A V ++SE +A ++ Sbjct: 127 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQ 159 >gi|260887702|ref|ZP_05898965.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] gi|260862582|gb|EEX77082.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] Length = 175 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 1/162 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M F R + G+ +VYP HG G I+ I++ EV G ++V+ M + +P Sbjct: 1 MRFAWGRAGGVVLLQVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 ++G+R + VE +++ W++R ++ SGD+ +A V R Sbjct: 61 TDNVDNMGLRDVIPETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVAR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAI 162 +L D + S ER+L + A +V E+ S S PE + Sbjct: 121 NLVLQDRLRKISSGERRLLDLARQIIVSELVYACSKS-PEEV 161 >gi|86159279|ref|YP_466064.1| CarD family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775790|gb|ABC82627.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-C] Length = 399 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 77/161 (47%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 30 LKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVA 89 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 90 TGAQMEGVFHYLGAVYDDPELDWKIRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPT 149 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E++ ++ A + I+ L + Sbjct: 150 KEREQYDNARHLLVHEVSVSLAVPPGLAEDYIDYALMPPAG 190 >gi|288555760|ref|YP_003427695.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546920|gb|ADC50803.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] Length = 162 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+H+VYP HG GTI +I+E++V G ++++ F + L +P + G+RK+ Sbjct: 2 FKVGDHVVYPYHGAGTIQDIEEKDVLGETHSYYILHFPLVDVKLMLPENRIDQSGLRKVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + +E ++ ++ + S ++E + + SG++I A ++ L + S+ Sbjct: 62 DQQELEVLVEALQNGPETPPS-TSHFSRETENLLKSGNIIDAAHLISSLSKKQSERANGL 120 Query: 134 --SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +R + A + E+ +N ++E +A I+ Sbjct: 121 HIQDRNHLQKARQMIASELVLMNDMTEEQAYEFID 155 >gi|221217751|ref|ZP_03589219.1| putative transcription factor [Borrelia burgdorferi 72a] gi|225550083|ref|ZP_03771043.1| putative transcription factor [Borrelia burgdorferi 118a] gi|221192428|gb|EEE18647.1| putative transcription factor [Borrelia burgdorferi 72a] gi|225369195|gb|EEG98648.1| putative transcription factor [Borrelia burgdorferi 118a] Length = 162 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKEFEGQIDSKKIKDGGYEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|30264785|ref|NP_847162.1| CarD family transcriptional regulator [Bacillus anthracis str. Ames] gi|47778348|ref|YP_021614.2| CarD family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|165869635|ref|ZP_02214293.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167638161|ref|ZP_02396439.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170705571|ref|ZP_02896035.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] gi|254725089|ref|ZP_05186872.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. A1055] gi|254736826|ref|ZP_05194532.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Western North America USA6153] gi|254754539|ref|ZP_05206574.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Vollum] gi|254757371|ref|ZP_05209398.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Australia 94] gi|30259460|gb|AAP28648.1| transcriptional regulator, CarD family [Bacillus anthracis str. Ames] gi|47552053|gb|AAT34089.2| transcriptional regulator, CarD family [Bacillus anthracis str. 'Ames Ancestor'] gi|164714464|gb|EDR19983.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167513978|gb|EDR89346.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170129696|gb|EDS98559.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] Length = 148 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 2 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 62 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 121 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+Q+ ++A M R + N E++NL Sbjct: 122 SEKQMLDNARKMMFRISSRYN-----ESLNL 147 >gi|219684504|ref|ZP_03539447.1| putative transcription factor [Borrelia garinii PBr] gi|219671866|gb|EED28920.1| putative transcription factor [Borrelia garinii PBr] Length = 162 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDIIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|49187604|ref|YP_030857.1| CarD family transcriptional regulator [Bacillus anthracis str. Sterne] gi|65322084|ref|ZP_00395043.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bacillus anthracis str. A2012] gi|177651210|ref|ZP_02934041.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190568329|ref|ZP_03021237.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|227817506|ref|YP_002817515.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|49181531|gb|AAT56907.1| transcriptional regulator, CarD family [Bacillus anthracis str. Sterne] gi|172083036|gb|EDT68098.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190560585|gb|EDV14562.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|227003355|gb|ACP13098.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] Length = 153 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+Q+ ++A M R + N E++NL Sbjct: 127 SEKQMLDNARKMMFRISSRYN-----ESLNL 152 >gi|51598613|ref|YP_072801.1| transcription factor, putative [Borrelia garinii PBi] gi|219685417|ref|ZP_03540235.1| putative transcription factor [Borrelia garinii Far04] gi|51573184|gb|AAU07209.1| transcription factor, putative [Borrelia garinii PBi] gi|219672973|gb|EED29994.1| putative transcription factor [Borrelia garinii Far04] Length = 162 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|225552173|ref|ZP_03773113.1| putative transcription factor [Borrelia sp. SV1] gi|225371171|gb|EEH00601.1| putative transcription factor [Borrelia sp. SV1] Length = 162 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSKEKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS E Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEV 148 >gi|224531667|ref|ZP_03672299.1| putative transcription factor [Borrelia valaisiana VS116] gi|224511132|gb|EEF81538.1| putative transcription factor [Borrelia valaisiana VS116] Length = 162 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L Sbjct: 2 AFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRAL 61 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 62 VSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILEHEISLALQISFEEA 148 >gi|15613946|ref|NP_242249.1| transcriptional factor [Bacillus halodurans C-125] gi|10173999|dbj|BAB05102.1| transcriptional factor [Bacillus halodurans C-125] Length = 164 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+H+VYP HG G + +I+E+E+ G +FV+ F + + +P + G+RK+ Sbjct: 2 FKIGDHVVYPFHGAGVVQDIEEKEILGETHSYFVLHFPLTDIKVMLPKHRIQQSGLRKVI 61 Query: 74 EAHFVERALK-LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V+ + L +G T ++ +++ + + SG +I A ++ L + Q E++ Sbjct: 62 DQSDVDHLIDALQKGPETPLST--NQFSKDTENLLKSGSIIDAAHLISGLAK--KQAERT 117 Query: 133 ----YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 +R + A + E+ V +ISE +A I+ +L S S Sbjct: 118 NGLHIQDRNFLQKAKQFIASELIVVKNISEEQAYAFIDEHLPSPS 162 >gi|94967584|ref|YP_589632.1| CarD family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549634|gb|ABF39558.1| transcriptional regulator, CarD family [Candidatus Koribacter versatilis Ellin345] Length = 186 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%) Query: 7 RDAMRQ--GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 R AM F G+ +VYP HGVG I +I + + + + + + + VP Sbjct: 6 RSAMNNTLSFIVGDKVVYPNHGVGIIEQISSRTIGAAVQKCYWLKIKASSLRVMVPFDSV 65 Query: 65 IDIGMRKLSEAHFVERALK-LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 +G+R++ + + ++ L GK W R +E K+ +G L+ +A V++ L Sbjct: 66 HLVGLRRVVRNGEITKIIEYLSDGKCESNHD-WKDRFKENSDKMRTGSLMEVAGVLKSLL 124 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 S+ E+++ E A +V E+A S EPE L+ Sbjct: 125 LLGQSKPLSFREKKMLERARYLLVSELAMAKSCEEPEVEELL 166 >gi|146296815|ref|YP_001180586.1| CarD family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410391|gb|ABP67395.1| transcriptional regulator, CarD family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 173 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL- 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 7 YKVGDTIIHPLHGAGEIVEIVEEKVFDNVQKYYVVRILYNGMKILVPVNSAAEIGIRNVI 66 Query: 73 --SEAHFVERALKLVRGKARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 EA+ V LK K + +++R +E K+ SG++ + EV++ L + Sbjct: 67 SEEEANKVFELLKDNNFKVDINNCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAAREKVK 126 Query: 130 EKSYSERQLYESALNRMVREIA 151 S +E+ ++ +A +V E+ Sbjct: 127 GLSTNEKMMFNNAKQILVSELG 148 >gi|297584628|ref|YP_003700408.1| CarD family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143085|gb|ADH99842.1| transcriptional regulator, CarD family [Bacillus selenitireducens MLS10] Length = 164 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP HG G + +I+E+E+ G KL +FV+ F +++ L +P K + G+R + Sbjct: 2 FSIGDCVVYPYHGAGRVEKIEEKEILGNKLLYFVVYFPLNQVTLMLPENKIGESGLRPVI 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ ++ + + + T + + ++E +A + +G + A V+ L+ S+ Sbjct: 62 TKKELDDVVESLCEEVEARETAATAKPYSRENEALLKTGSIYDAARVISLLNAKKSERAN 121 Query: 132 SY--SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +R+ E A +V E+ +N SE +A I+ N+ Sbjct: 122 GLHIEDRKNLERATQFLVSEVKNINGFSEEDAKLFIKNNI 161 >gi|312793424|ref|YP_004026347.1| CarD family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876058|ref|ZP_07736047.1| transcriptional regulator, CarD family [Caldicellulosiruptor lactoaceticus 6A] gi|311797256|gb|EFR13596.1| transcriptional regulator, CarD family [Caldicellulosiruptor lactoaceticus 6A] gi|312180564|gb|ADQ40734.1| transcriptional regulator, CarD family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 168 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 2 YKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNVI 61 Query: 74 EAHFVERALKLVRG---KARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 62 SEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKVK 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEA 161 S +E+ ++ +A +V E+ I+ E Sbjct: 122 GLSTNEKMMFNTAKQILVSELGLAKGIAIEEV 153 >gi|254687524|ref|ZP_05151380.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. CNEVA-9066] gi|254741862|ref|ZP_05199549.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Kruger B] Length = 146 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 2 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 61 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 62 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 121 Query: 134 SERQLYESA 142 SE+Q+ ++A Sbjct: 122 SEKQMLDNA 130 >gi|187935467|ref|YP_001885252.1| CarD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187723620|gb|ACD24841.1| transcriptional regulator, CarD family [Clostridium botulinum B str. Eklund 17B] Length = 160 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 83/159 (52%), Gaps = 2/159 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + +R ++ Sbjct: 2 FKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMIN 61 Query: 74 EAHFVERALKLVRGKARVKR-TMWSRRAQEYDA-KINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L ++ + + + S+ E + KI SG L +V +L + Sbjct: 62 DINTLEDILNHIQDTSDPEELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKAL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + +E+Q+ +A N ++ EI + ISE EA +++ ++S Sbjct: 122 NSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS 160 >gi|302871953|ref|YP_003840589.1| transcriptional regulator, CarD family [Caldicellulosiruptor obsidiansis OB47] gi|302574812|gb|ADL42603.1| transcriptional regulator, CarD family [Caldicellulosiruptor obsidiansis OB47] Length = 168 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 4/142 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 2 YKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNVI 61 Query: 74 EAHFVERALKLVRG---KARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 62 SEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKIK 121 Query: 130 EKSYSERQLYESALNRMVREIA 151 S +E+ ++ +A +V E+ Sbjct: 122 GLSTNEKMMFNTAKQILVSELG 143 >gi|312135061|ref|YP_004002399.1| CarD family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311775112|gb|ADQ04599.1| transcriptional regulator, CarD family [Caldicellulosiruptor owensensis OL] Length = 168 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 4/142 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 2 YKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNVI 61 Query: 74 EAHFVERALKLVRG---KARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 62 SEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKIK 121 Query: 130 EKSYSERQLYESALNRMVREIA 151 S +E+ ++ +A +V E+ Sbjct: 122 GLSTNEKMMFNTAKQILVSELG 143 >gi|222529236|ref|YP_002573118.1| CarD family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312622517|ref|YP_004024130.1| CarD family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|222456083|gb|ACM60345.1| transcriptional regulator, CarD family [Caldicellulosiruptor bescii DSM 6725] gi|312202984|gb|ADQ46311.1| transcriptional regulator, CarD family [Caldicellulosiruptor kronotskyensis 2002] Length = 168 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 2 YKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNVI 61 Query: 74 EAHFVERALKLVRG---KARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 62 SEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKVK 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEA 161 S +E+ ++ +A +V E+ ++ E Sbjct: 122 GLSTNEKMMFNTAKQILVSELGLAKGLAIEEV 153 >gi|312127692|ref|YP_003992566.1| CarD family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777711|gb|ADQ07197.1| transcriptional regulator, CarD family [Caldicellulosiruptor hydrothermalis 108] Length = 168 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 2 YKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNVI 61 Query: 74 EAHFVERALKLVRG---KARVKRT-MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 62 SEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKVK 121 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEA 161 S +E+ ++ +A +V E+ ++ E Sbjct: 122 GLSTNEKMMFNTAKQILVSELGLAKGLAIEEV 153 >gi|281414624|ref|ZP_06246366.1| transcriptional regulator, CarD family protein [Micrococcus luteus NCTC 2665] Length = 137 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 62/117 (52%) Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104 + + + + ++VP +G+R + +A +E ++++R + + T WSRR + Sbjct: 11 YLKLKVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANL 70 Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 K+ SGD+ +AEVVRDL R D S E+++ A +V E+A ++E EA Sbjct: 71 EKLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVSELALAKKVTEEEA 127 >gi|297624690|ref|YP_003706124.1| CarD family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165870|gb|ADI15581.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM 17093] Length = 168 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 2/156 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK-L 72 ++ G+ +V P +GVG + + VAG ++ + F VPV G+R L Sbjct: 8 YKHGDQVVLPPYGVGVVAGTTVRTVAGTDHHYYEVEFPNGTSKAFVPVAAPQAAGLRPAL 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++A + +L G+ + + W+ R + ++SGD IA + +L R D + Sbjct: 68 TKAEVHKVLERLSNGRINLPK-QWAARHRRVTEILSSGDPYQIATLGSELRRWDLERGLP 126 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 +RQ Y AL + EI+AV I+ EA +++ Sbjct: 127 DLDRQAYRRALRLLAGEISAVLGITPKEAREMMDAG 162 >gi|257068130|ref|YP_003154385.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558948|gb|ACU84795.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 179 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL-S 73 + G+ + +P HG I + V G + E+ + D+M + VP +G+R L + Sbjct: 14 KVGDVLTHPVHGPVRIVSTCTRTVRGTEREYVDLEVIGDEMRISVPSDGRDVVGLRTLLA 73 Query: 74 EAHFVERALKL-VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E VE +L +A K+ W+ R + ++ +G L EV+R + R S Sbjct: 74 EPEIVEMITQLGAPIEAPGKKASWAHRIKSLQMQLQTGRLTDRVEVIRAIVRDSGGTPSS 133 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +ER L + A++ + EIA S+S EA L++ Sbjct: 134 LAERNLLKQAIDPLASEIAIARSVSREEAHELLQ 167 >gi|188590479|ref|YP_001920384.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|188500760|gb|ACD53896.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] Length = 160 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R ++ Sbjct: 2 FNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPIDRLPNSKLRMIN 61 Query: 74 EAHFVERALKLVRGKARVKRT-MWSRRAQEYDA-KINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L + + + + S++ E + KI SG L +V +L + Sbjct: 62 DINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKAL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + +E+Q+ +A ++ EI + ISE EA Sbjct: 122 NSTEKQILNTAQKFLIDEIRVIKDISENEA 151 >gi|182419889|ref|ZP_02951127.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237669021|ref|ZP_04529005.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376258|gb|EDT73842.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237657369|gb|EEP54925.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 165 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP GVG I I+E+E G K +++ I + M L +P+ + MR +S Sbjct: 4 FDIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHIS 63 Query: 74 EAHFVERALK----LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 ++ ++ L V+ ++ +T + R + Y K+ SG L E++ +L + Sbjct: 64 DSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDFLEIISNLTELKTIH 123 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + E+ + + ++ EIA IS EA L+++ ++S Sbjct: 124 DLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS 165 >gi|251781081|ref|ZP_04824001.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085396|gb|EES51286.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R ++ Sbjct: 2 FNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPLDRIPNSKLRMIN 61 Query: 74 EAHFVERALKLVRGKARVKRT-MWSRRAQEYDA-KINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L + + + + S++ E + KI SG L +V +L + Sbjct: 62 DINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKAL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + +E+Q+ +A ++ EI + ISE EA Sbjct: 122 NSTEKQILNTAQKFLIDEIRVIKDISENEA 151 >gi|203284271|ref|YP_002222011.1| transcription factor, putative [Borrelia duttonii Ly] gi|201083714|gb|ACH93305.1| transcription factor, putative [Borrelia duttonii Ly] Length = 161 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L Sbjct: 3 FVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRALV 62 Query: 74 EAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE +++ + ++ + + ++ D+++ A++ + L+ Q E Sbjct: 63 SKEKVEEVFDIIKDFEGQIDQKKIKDGSHDF---YKQSDILSTAKLYKFLYVKSMQKELP 119 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 120 FYEKRILNDFELILQHEISLALQISFEEA 148 >gi|203287808|ref|YP_002222823.1| transcription factor, putative [Borrelia recurrentis A1] gi|201085028|gb|ACH94602.1| transcription factor, putative [Borrelia recurrentis A1] Length = 164 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L Sbjct: 3 FVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRALV 62 Query: 74 EAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE +++ + ++ + + ++ D+++ A++ + L+ Q E Sbjct: 63 SKEKVEEVFDIIKDFEGQIDQKKIKDGSHDF---YKQSDILSTAKLYKFLYVKSMQKELP 119 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 120 FYEKRILNDFELILQHEISLALQISFEEA 148 >gi|119953150|ref|YP_945359.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135] gi|119861921|gb|AAX17689.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135] Length = 161 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L Sbjct: 2 AFVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRAL 61 Query: 73 SEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE +++ + ++ + + ++ D+++ A++ + L+ Q E Sbjct: 62 VSKEKVEEVFNIIKDFEEQIDQKKIKDGSHDF---YKQSDILSTAKLYKFLYTKSMQKEL 118 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEA 161 + E+++ + EI+ IS EA Sbjct: 119 PFYEKRILNDFELILQHEISLALQISFEEA 148 >gi|187918225|ref|YP_001883788.1| CarD-like transcriptional regulator [Borrelia hermsii DAH] gi|119861073|gb|AAX16868.1| CarD-like transcriptional regulator [Borrelia hermsii DAH] Length = 161 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 4/162 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L Sbjct: 3 FVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRALV 62 Query: 74 EAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE +++ + ++ + + ++ D+++ A++ + L+ Q E Sbjct: 63 SREKVEEVFDIMKDFEGQIDQKKIKDGSHDF---YKQSDILSTAKLYKFLYTKSMQKELP 119 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + E+++ + EI+ IS EA I+ LS+ S Sbjct: 120 FYEKRILNDFELILQHEISLALQISFEEAKQKIKEVLSTGKS 161 >gi|328951535|ref|YP_004368870.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] gi|328451859|gb|AEB12760.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] Length = 164 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+Q +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+ Sbjct: 1 MKQ-YRPGDKVVLPPYGVGVVAGIAKRTVAGVGRSYYQVEFPGTRSKAFVPVESPGQVGL 59 Query: 70 RK-LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R LS E +L G+ + + W+ R + + GD IA + L R + + Sbjct: 60 RPALSREEVGEILERLKNGRVSLPK-QWAARHRRVTEILAEGDPYRIAVLAGQLRRWEVE 118 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ + A+N + E++ I+ EA L E Sbjct: 119 RGLPDLDRQAFRRAVNLLAEEVSQALEITVEEARQLFE 156 >gi|320335300|ref|YP_004172011.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756589|gb|ADV68346.1| transcriptional regulator, CarD family [Deinococcus maricopensis DSM 21211] Length = 168 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRKL 72 R G+ +VYP HG G + + E+ V G+K ++ V F KD L VPV +A D+G+R+ Sbjct: 7 LREGDSVVYPNHGAGVVRALTERTVLGVKQAYYEVHLFGKDAQVL-VPVARARDLGLRRA 65 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 + V L + + + +R E + + + DL+ + +V L R D Sbjct: 66 TRREDVPNLLAELSTDIPLPESFQARYRAEQEL-LQAADLVTLTRLVGTLVRRD 118 >gi|313679234|ref|YP_004056973.1| CarD family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313151949|gb|ADR35800.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM 14977] Length = 164 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 66/144 (45%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+R Sbjct: 4 YRPGDKVVLPPYGVGVVAGIAQRTVAGIGRSYYQVEFPGSRSKAFVPVESPQQVGLRPAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V + L+ ++ W+ R + ++ G+ IA + L R D++ Sbjct: 64 TRDEVPQILEHLKHGQLPLPKQWAARHRRVTEILSEGNPHRIAILAGQLRRWDAERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSIS 157 +RQ + A+N + E+A I+ Sbjct: 124 LDRQAFRRAINLLAEEVAQALEIT 147 >gi|320449429|ref|YP_004201525.1| transcriptional regulator [Thermus scotoductus SA-01] gi|320149598|gb|ADW20976.1| transcriptional regulator [Thermus scotoductus SA-01] Length = 164 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 67/153 (43%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +GMRK Sbjct: 4 FRPGDKVVLPPYGVGVVAGIAQRSVSGISRAYYQVDFPGSRSKAYVPVEAPQSVGMRKAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 64 APEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ A+ + E++ I+ EA L E Sbjct: 124 LDRQALRRAIYLLAEEVSQTLEITVQEAKRLFE 156 >gi|83952971|ref|ZP_00961698.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] gi|83835633|gb|EAP74935.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] Length = 41 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 27/33 (81%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46 FR +++VYPAHGVG I I+EQE+AG++LE F Sbjct: 9 FRPNDYVVYPAHGVGQIVSIEEQEIAGIELELF 41 >gi|55980137|ref|YP_143434.1| hypothetical protein TTHA0168 [Thermus thermophilus HB8] gi|55771550|dbj|BAD69991.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 164 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 68/153 (44%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK Sbjct: 4 FRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 64 APEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ A++ + E+A I+ EA L E Sbjct: 124 LDRQALRRAIHLLAEEVAQSLEITVQEAKRLFE 156 >gi|218294627|ref|ZP_03495481.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23] gi|218244535|gb|EED11059.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23] Length = 164 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 67/153 (43%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ +V P +GVG + I ++ ++G+ ++ + F + VPV +GMRK Sbjct: 4 FRPGDKVVLPPYGVGVVAGIAQRSISGVSRAYYQVDFPGSRSKAYVPVEAPQSVGMRKAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 64 SPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ A+ + E++ I+ EA L E Sbjct: 124 LDRQALRRAICLLAEEVSQTLEITVQEAKRLFE 156 >gi|46200120|ref|YP_005787.1| transcriptional regulator [Thermus thermophilus HB27] gi|46197748|gb|AAS82160.1| transcriptional regulator [Thermus thermophilus HB27] Length = 164 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 68/153 (44%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK Sbjct: 4 FRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 64 APEEVPVILDLLKNGRMPLPKQWAARHRKTSEILAEGNPYRIAQMAGQLRAWEVERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ A++ + E+A I+ EA L E Sbjct: 124 LDRQALRRAIHLLAEEVAQSLEITVQEAKRLFE 156 >gi|83952331|ref|ZP_00961063.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] gi|83837337|gb|EAP76634.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] Length = 50 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/37 (64%), Positives = 28/37 (75%) Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 TD Q E+SYSERQLYE+AL R+ RE+AAVN E A Sbjct: 1 TDDQREQSYSERQLYEAALERLTREVAAVNGNDEVAA 37 >gi|320333642|ref|YP_004170353.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754931|gb|ADV66688.1| transcriptional regulator, CarD family [Deinococcus maricopensis DSM 21211] Length = 165 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 2/142 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +V P +G+G ++ + VAG ++ + F VPV + GMR Sbjct: 4 FSKGDRVVLPPYGIGVVSGTCTRPVAGTPHAYYQVEFPNTTSRAFVPVDAPMTAGMRPAL 63 Query: 74 EAHFVERAL-KLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + L +L G+ + R W+ R ++ + SGD +A + +L R + + Sbjct: 64 TGEDMPALLERLQEGQLNLPR-QWAARHRKVTEILVSGDPFELATLACELRRWNVERGLP 122 Query: 133 YSERQLYESALNRMVREIAAVN 154 +RQ Y AL + +E+ +N Sbjct: 123 DLDRQAYRRALKLLNQEVHDLN 144 >gi|4154037|emb|CAA22685.1| putative transcriptional regulator [Mycobacterium leprae] Length = 94 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R + Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRR 99 +++ +++R + T WSRR Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWSRR 88 >gi|85707555|ref|ZP_01038627.1| transcriptional regulator, CarD family protein [Roseovarius sp. 217] gi|85667927|gb|EAQ22816.1| transcriptional regulator, CarD family protein [Roseovarius sp. 217] Length = 51 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 36/51 (70%) Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 R+D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L S+++ Sbjct: 1 RSDDQREQSYSERQLYEAALERLTREVAAVSGGDEVLAARQVDEVLVSRAA 51 >gi|229917522|ref|YP_002886168.1| CarD family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468951|gb|ACQ70723.1| transcriptional regulator, CarD family [Exiguobacterium sp. AT1b] Length = 172 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 5/129 (3%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMRK 71 F+TG+ I+Y HGV I +I ++ VAG ++ + + K+ + +PV ++ M Sbjct: 2 FKTGDLIIYSTHGVCRIDDISDKTVAGETKSYYTLHPINNSQKLQISIPVDND-NVMMLT 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 L EA L+ R + R +E+ ++SG+ IA+VV L R Q E Sbjct: 61 LLEADEASEILESFRSPGVEWNPHSNNRNREFLNVVHSGNRHEIAQVVNTLSR--RQIEA 118 Query: 132 SYSERQLYE 140 + ++LYE Sbjct: 119 LQANKKLYE 127 >gi|291294864|ref|YP_003506262.1| CarD family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290469823|gb|ADD27242.1| transcriptional regulator, CarD family [Meiothermus ruber DSM 1279] Length = 164 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 2/154 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 +R G+ +V P +GVG + I ++ VAG ++ + F + VPV +R+ Sbjct: 4 YRPGDKVVLPPYGVGVVAGIAQRSVAGSDRAYYQVDFPGTRSKAYVPVEAPQTTRLRRAL 63 Query: 74 EAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V L L++ G+ + R W+ R ++ + GD IA + L + + Sbjct: 64 SPDQVNEILALLQEGRLPLPR-QWAARHRKTTEILADGDPFRIATLAGQLRAWELEKGLP 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ A++ + EI+ V I+ EA L E Sbjct: 123 DLDRQALRRAMHLLAEEISQVLEITLDEARKLFE 156 >gi|226354827|ref|YP_002784567.1| CarD family transcriptional regulator [Deinococcus deserti VCD115] gi|226316817|gb|ACO44813.1| putative Transcriptional regulator, CarD family [Deinococcus deserti VCD115] Length = 178 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 2/140 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK- 71 F+ G+ +V P +G+G + E+ VAG ++ + F VPV G+R+ Sbjct: 5 AFQIGDRVVLPPYGIGVVCGTCERPVAGQAHAYYQVEFPATASRAYVPVADPACTGIRRA 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 L++ + +L G+ + R WS R + + + G +A + +L R + Q Sbjct: 65 LNDQDLPDLLNQLCHGELELPR-QWSARHRVVNDILAGGKPYELAALTCELRRWNMQRGL 123 Query: 132 SYSERQLYESALNRMVREIA 151 +RQ + A+ + +E++ Sbjct: 124 PDLDRQAFRRAIRLLEQEVS 143 >gi|169335625|ref|ZP_02862818.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM 17244] gi|169258363|gb|EDS72329.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM 17244] Length = 170 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIG-MRK 71 ++ E I+Y GV I+EI E+ G K +++++ K+ M + VPV MRK Sbjct: 2 YKVDEIILYDTEGVCRISEITEKTFGGKKQKYYILNTVSKNSMTIYVPVDNEKQTSKMRK 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 + + + KL+R + +W R + Y I SGD + +++R LH Sbjct: 62 ILSS---DEIYKLIRNMPN-EDLIWIENDGERKETYKQIIQSGDRRGLIKIIRTLHFQKE 117 Query: 128 QPEKS-----YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 Q K S+ Q +SA + E + V I + I I Sbjct: 118 QLTKQGKKLHMSDEQFMKSAQKILHEEFSHVLKIEPNQVIPFI 160 >gi|254518837|ref|ZP_05130893.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912586|gb|EEH97787.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 162 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKL 72 F+ +++VY ++GV +T+I++ + +LE+++++ +KM +K PV I MR+L Sbjct: 2 FKINDYVVYGSNGVCKVTDIEQVTLRNEELEYYILSPVYNEKMTIKTPVNNQ-KILMREL 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111 + LK + V+ RR +EY A I G+ Sbjct: 61 MTKAEIVNLLKEISKNETVEIEDSRRRVEEYKAIIRRGN 99 >gi|160946835|ref|ZP_02094038.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270] gi|158447219|gb|EDP24214.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270] Length = 159 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 1/155 (0%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID-IGMRKLSE 74 GE I YP HG G I I+++++ F+VI ++ ID RKL Sbjct: 3 VGEKIFYPMHGAGLIKSIEDKDLGDYCERFYVIELPFEQNLHIFIKEDDIDKFEFRKLVN 62 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 ++ + + W +R +E ++ S D+ IA V++ L + + + S Sbjct: 63 EDTLDEVYNYLNNEEFPMPNNWVQRYKENTKRLKSSDIFNIAYVLKGLSIRNEKGKLSLK 122 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E + A +V E V+ S+ + +IE ++ Sbjct: 123 ELFMLNLAKRILVSEFVMVSGFSKNKINKIIEYSM 157 >gi|94984278|ref|YP_603642.1| CarD family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554559|gb|ABF44473.1| transcriptional regulator, CarD family [Deinococcus geothermalis DSM 11300] Length = 167 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 1/141 (0%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R FRTG+ +V P +G+G ++ ++ VAG ++ + F VPV G+R Sbjct: 3 RAFFRTGDRVVLPPYGIGVVSGTCQRPVAGSIQVYYQVDFPNTASRAFVPVDAPQSTGLR 62 Query: 71 -KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 L+ A +L + W+ R + + GD IA + +L R + + Sbjct: 63 AALTAADMPGLLQRLQSSQTLNLPRQWAARHRRVTEILVGGDPYEIATLTCELRRWNMER 122 Query: 130 EKSYSERQLYESALNRMVREI 150 +RQ + A+ + +E+ Sbjct: 123 GLPDLDRQAFRRAIRLLEQEV 143 >gi|297567462|ref|YP_003686434.1| CarD family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851911|gb|ADH64926.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM 9946] Length = 164 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 2/154 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK-L 72 +R G+ +V P +GVG + I ++ ++G + ++ + F + VPV MR L Sbjct: 4 YRPGDKVVLPPYGVGVVASIMQRTISGNQRAYYQVEFPNTRSKAYVPVESPQSARMRPAL 63 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E L G+ + R W+ R ++ + GD IA + L + + Sbjct: 64 CREEIEEILELLRNGRLSLPRQ-WAARHRKTSEILAEGDPYRIATLAGQLRAWELERGLP 122 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 +RQ + A++ + E+ +S EA + E Sbjct: 123 DLDRQAFRRAIHLLAEEVCQAMEVSLEEARAMFE 156 >gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] Length = 1198 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 F+ G+++V+ HG+ +I +QEVAG K ++F++ + +D L VP Sbjct: 499 FKPGDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYAQDDK-LYVP 544 >gi|326792245|ref|YP_004310066.1| CarD family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543009|gb|ADZ84868.1| transcriptional regulator, CarD family [Clostridium lentocellum DSM 5427] Length = 160 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ + P G G + I+E+++ E+ +I + +P K R +S Sbjct: 2 FKVGDKVFCPLRGAGIVATIEERKMLDETKEYIIIKLQSSNTTVMIPTDKVEASHFRFVS 61 Query: 74 EAHFVERAL-KLVRGKARVK-RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + L KL + + T+ +R + ++ +G L EV+R+L Sbjct: 62 DETMTNEVLEKLADKETEIHASTVLKQRMKVNKERLMAGSLADYGEVIRELTHIQRGKAL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 + SE + A + E++ + SIS EA L++ Sbjct: 122 NASENAMLMEARKFLADELSLIKSISMKEATKLLD 156 >gi|2393788|gb|AAC45647.1| OrfC [Bacillus subtilis] Length = 116 Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/104 (22%), Positives = 53/104 (50%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114 M + +P K + +R +++ ++ + + + + W +R + KI +G++ Sbjct: 6 MTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQE 65 Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 AEVVRDL R + + SE+++ ++A ++ E+ + I+E Sbjct: 66 GAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITE 109 >gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPV 61 F+ G+++V+ HG+ +EI QEV G + ++F++ + D DK L VP+ Sbjct: 532 FKPGDYVVHATHGIALFSEIARQEVGGKERDYFLLEYADGDK--LYVPL 578 >gi|149190436|ref|ZP_01868707.1| methionyl-tRNA formyltransferase [Vibrio shilonii AK1] gi|148835690|gb|EDL52656.1| methionyl-tRNA formyltransferase [Vibrio shilonii AK1] Length = 315 Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%) Query: 86 RGKARVKRTMWSRRAQ------EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139 RG A ++R++W+ AQ + D +++GD++ IA + + TD+ +L Sbjct: 119 RGAAPIQRSIWAGDAQTGVTIMQMDIGLDTGDMLKIATL--PIEATDTSATMYDKLAELG 176 Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 AL + +IA+ N+ PE N E N +SK SK E NQ Sbjct: 177 PQALVECLADIASGNA--APEKQNDDEANYASKLSKDEAKIDWNQ 219 >gi|15807459|ref|NP_296192.1| hypothetical protein DR_2472 [Deinococcus radiodurans R1] gi|6460292|gb|AAF12015.1|AE002076_7 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 169 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 8/172 (4%) Query: 9 AMRQ-GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +M+Q FR G+ +V P +G+G ++ + +G ++ + F + VP Sbjct: 3 SMKQTAFRPGDRVVLPPYGLGIVSGTCQHTRSGEGCWYYQVDFPESGHLALVPTHSPDQA 62 Query: 68 GMRKLSEAHFVERALK--LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 G+R + RAL+ L RG+ + R SR+ Q + + G +A ++ +L+R Sbjct: 63 GLRPALRQREL-RALRQALERGQLELARQCSSRQRQ-VNEVLRLGQPTQLALLIAELYRW 120 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 Q +RQ A+ + +E V+ + + +A+ + + L + +S E Sbjct: 121 QRQRPLPDLDRQALRQAIRLLQQE---VSGLEDSQALAIRDFLLRATASLNE 169 >gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] Length = 1147 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 F+ G+++V+ HG+ T I QEVAG + ++F++ + D L VP+ Sbjct: 484 FKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDK-LYVPL 530 >gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1166 Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HG+G IK+ EVAG K ++ I +DK DK L VPV Sbjct: 502 LKPGDYVVHANHGIGVYKGIKQIEVAGHKRDYLDIVYDKGDK--LYVPV 548 >gi|323488890|ref|ZP_08094129.1| transcriptional regulator, CarD family protein [Planococcus donghaensis MPA1U2] gi|323397453|gb|EGA90260.1| transcriptional regulator, CarD family protein [Planococcus donghaensis MPA1U2] Length = 169 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPV--GKAIDIGMR 70 F G+HI+Y HG+ I +I + V+ + +++ + + + + PV K + + + Sbjct: 2 FAIGDHIIYSTHGLCKINDIYDMTVSEVTKKYYQLQPLENTLVTISTPVDNDKVVMLKLL 61 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT--DSQ 128 + EA + K ++ V + + +AQ KI SGD + IA V+ L R D+Q Sbjct: 62 QREEALAIIEVFKQPETESEVPQNL---KAQP--KKIQSGDRMQIAGVINGLLRKKFDTQ 116 Query: 129 PEKSYSERQLYESALNRM 146 +K LYE N + Sbjct: 117 IQK----ESLYEHDYNLL 130 >gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM 16511] gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM 16511] Length = 998 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R GE++V+ HGVG I+++EV G EF V+ + + L VPV Sbjct: 360 RPGEYVVHETHGVGIFKGIEKREVLGATREFVVVQYQGEDTLL-VPV 405 >gi|220930374|ref|YP_002507283.1| CarD family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000702|gb|ACL77303.1| transcriptional regulator, CarD family [Clostridium cellulolyticum H10] Length = 175 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMRK 71 F G I+Y HG+ I E+K+ + ++V+ F+ + + PVG +I +K Sbjct: 2 FSVGNTIIYGNHGICKIVEVKDMTIDSNTRPYYVLKPVFENNS-TIYFPVGN--EIAEKK 58 Query: 72 LSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLH 123 + VE L+R + T+W + R + Y + + D A+ ++++ LH Sbjct: 59 MRRILSVEEIYTLIREMPD-ENTIWIENENERKEVYKSILTGTDRSALVKLIKTLH 113 >gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 1160 Score = 37.7 bits (86), Expect = 0.71, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50 F G+++V+P HG+G IK EV G ++ VIA+ Sbjct: 497 FSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAY 533 >gi|261367183|ref|ZP_05980066.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] gi|282570778|gb|EFB76313.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] Length = 167 Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKD-KMCLKVPVGKAIDIG-M 69 F+ G+ + Y GV TI E K +AG + E +++ +D K+C VP + + M Sbjct: 2 FQVGDAVSYGTSGVCTIAEKKNVRLAGQQCECYILKPVYDSTMKIC--VPCNSQVLLDRM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 R L + + L++ A R + Y + SGD A+ ++RD++ Sbjct: 60 RALPSK---QELMDLLQEPAPEHEPDPEVRKEHYRQTLQSGDRHALLRMIRDIY 110 >gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM 43043] gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM 43043] Length = 1208 Score = 37.4 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 R G+H+V+ HGVG E+ ++ VAG E+ VI + K Sbjct: 519 LRPGDHVVHEQHGVGRFVEMMQRTVAGATREYLVIEYAASK 559 >gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] Length = 1195 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPV 61 F+ G+++V+ HGV EI QEV G + ++F++ + DK L VP+ Sbjct: 512 FKPGDYVVHSTHGVALFAEIVRQEVGGKERDYFLLEYAGGDK--LYVPL 558 >gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] Length = 1192 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPV 61 F+ G+++V+ HG+ +EI QEV G + ++F++ + DK L VP+ Sbjct: 510 FKPGDYVVHATHGIALFSEIVRQEVGGKERDYFMLEYAGGDK--LYVPL 556 >gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] Length = 1166 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HG+G IK+ +V G K ++ I +DK DK L VPV Sbjct: 502 LKPGDYVVHANHGIGVYKGIKQIDVGGHKRDYLDIVYDKGDK--LYVPV 548 >gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] Length = 1169 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HGVG IK+ EV G ++ I +DK DK L VPV Sbjct: 503 LKLGDYVVHANHGVGVYKGIKQIEVGGHTRDYLDIVYDKGDK--LYVPV 549 >gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] Length = 1187 Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKM 55 ++ G+++V+ HG+G I QEV G++ ++F++ + D DK+ Sbjct: 508 YQPGDYVVHATHGIGRFASIVRQEVGGLERDYFLLEYADGDKL 550 >gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] Length = 1167 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HG+G IK+ +V+G K ++ I +DK DK L VPV Sbjct: 503 LKPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYLDIVYDKGDK--LYVPV 549 >gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] Length = 1167 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HG+G IK+ +V+G K ++ I +DK DK L VPV Sbjct: 503 LKPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYLDIVYDKGDK--LYVPV 549 >gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1167 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPV 61 + G+++V+ HG+G IK+ +V+G K ++ I +DK DK L VPV Sbjct: 503 LKPGDYVVHINHGIGVYKGIKQIDVSGHKRDYLDIVYDKGDK--LYVPV 549 >gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] Length = 1198 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 25/41 (60%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+++V+ HGVG E+K++EV G E+ V+ + K Sbjct: 521 LKPGDYVVHEQHGVGQFIEMKQREVQGATREYLVLEYGASK 561 >gi|114567389|ref|YP_754543.1| transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338324|gb|ABI69172.1| transcriptional regulator, CarD family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 166 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 14 FRTGEHIVYPAHGVGTITEI-KEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMR 70 F+ +++VY +GV I +I K+ + E++++ ++ + VPV + +I MR Sbjct: 2 FKVKDYVVYGLNGVCQIADIRKDNYDNSNETEYYILKPVYNTSITSIMVPVNNS-NIMMR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +S + V L L+ ++ T W ++R +Y A + +G ++++ L++ Sbjct: 61 AISTKNDV---LSLIAKMPDIETTSWIDNDTQRTNQYKAALRTGKTEEWVKIIKTLYQ 115 >gi|224438472|ref|ZP_03659396.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] gi|313144905|ref|ZP_07807098.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] gi|313129936|gb|EFR47553.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] Length = 1005 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAID 66 GE++V+ +GVG IK+ +VAG+ +F IA+ +DK+ L V ID Sbjct: 367 GEYVVHNDYGVGIFQGIKQAQVAGVVRDFIEIAYQGEDKLLLPVENLNMID 417 >gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614] gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614] Length = 1224 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 M ++KR G+++V+ HGVG E+K++EV G E+ V+ + K Sbjct: 526 MPARRKRQIDPLELSAGDYVVHEQHGVGRFVEMKQREVGGAVREYLVLEYGASK 579 >gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC BAA-974] gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC BAA-974] Length = 1155 Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 +TG+ +V+ HGVG E+ E+ VAG + E+ V+ + K Sbjct: 527 ALKTGDFVVHDQHGVGRFVELVERTVAGARREYVVVEYASSK 568 >gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 731 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52 K DA F+ G+ I + G+GTI +IKEQ+ G +L V+AFDK Sbjct: 673 KTDASDSDFQVGDKIRHSKWGMGTIVQIKEQD-KGNEL---VVAFDK 715 >gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084] gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084] Length = 1171 Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 26/37 (70%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50 F+ G+++V+ HG+ ++I QEVAG + ++F++ + Sbjct: 507 FKPGDYVVHATHGIALFSDIVRQEVAGRERDYFLLEY 543 >gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] Length = 1138 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 F+ G+++V+ HG+ +I Q+V G ++F++ + D L VP Sbjct: 480 FKPGDYVVHATHGIALFKQIVRQDVGGKPRDYFLLIYANDDK-LYVP 525 >gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] Length = 1204 Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 31/141 (21%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 + G+H+V+ HGVG E+ ++ V G E+ VI + K L VP + ++ Sbjct: 528 LKVGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGDR-LYVPTDQLDEVTRYVGG 586 Query: 74 EAHFVER--------------------ALKLVR---------GKARVKRTMWSRRAQEYD 104 E+ + R A +L+R G A T W R ++ Sbjct: 587 ESPTLNRMGGADWAKAKTKAKKAVKEIAGELIRLYSARMASPGHAFGPDTPWQREMEDAF 646 Query: 105 AKINSGD-LIAIAEVVRDLHR 124 +GD L AI EV RD+ R Sbjct: 647 PYAETGDQLEAIDEVKRDMER 667 >gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B] gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B] Length = 1157 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKV 59 + G+++V+ +HG+G ++ EV+G+K ++ VI F DK+ L + Sbjct: 492 EDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPI 540 >gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] Length = 1187 Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 25/42 (59%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 RTG+++V+ HG+G E+ ++ VAG E+ V+ + K Sbjct: 496 ALRTGDYVVHEQHGIGRYVEMVQRTVAGATREYLVLEYASSK 537 >gi|291542940|emb|CBL16050.1| Transcriptional regulators, similar to M. xanthus CarD [Ruminococcus bromii L2-63] Length = 162 Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 11/116 (9%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIG-MRK 71 + GE ++Y ++GV ITEI +++ +E++V+ D L VP + + MR Sbjct: 2 YSIGEIVLYGSNGVCEITEITTKKIGKDSIEYYVLKPVCSDSSTLFVPTQNEMLVSRMRA 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLH 123 + + ++ L + +W + R ++ I+ GD + + E++R +H Sbjct: 62 VLSSDEIKDIL-----SQKTDNEIWIDNKAERCEKIKEIISGGDCMKLVELIRRMH 112 >gi|253576632|ref|ZP_04853960.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844046|gb|EES72066.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ I Y HGV I E+ + +AG+ ++ + + + + +PV +A + ++KL Sbjct: 2 FDKGDLISYSVHGVCRIDEVCVKSLAGVSKTYYELHPLSNETLKISIPVDRA-PLQLQKL 60 Query: 73 SEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 E A+ L+ W R Y A + +GD IA+V L R Sbjct: 61 MGP---EEAMALI-DSFMAPGIPWIDNNHERHHNYSAIVKTGDREGIAKVANTLMRRKQW 116 Query: 129 PEKSY-----SERQLYESALNRMVREIAAV 153 E+++ + QL N E+A V Sbjct: 117 SEQNHKKLGNQDNQLLLGIQNTSFNEMAIV 146 >gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1149 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 Q G+++V+ HG+G I +EV G+ +F IA+ D + L VP+ Sbjct: 477 QELHIGDYVVHNQHGIGKYLGIVNKEVDGIHKDFLHIAYKGDDVLL-VPL 525 >gi|306830612|ref|ZP_07463777.1| transketolase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427120|gb|EFM30227.1| transketolase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 661 Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCLKVPVGKAID 66 + GF +H Y HG G + E QE A +KL V+ +D + + L P KA Sbjct: 143 KPGFNIVDHYTYALHGDGCLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSKAFT 202 Query: 67 IGMRKLSEAHFVERAL 82 ++ EA+ + L Sbjct: 203 EDIKGKFEAYGWQHIL 218 >gi|166234055|sp|Q17IE8|CDK8_AEDAE RecName: Full=Cyclin-dependent kinase 8; AltName: Full=Cell division protein kinase 8; AltName: Full=Mediator complex subunit Cdk8; AltName: Full=Mediator of RNA polymerase II transcription subunit Cdk8 Length = 501 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 HR +S K Y+ +Q+ + L+ REIA + + P INLI V LS K Sbjct: 39 HRKESNDTKDYALKQIEGTGLSMSACREIALLRELKHPNVINLIRVFLSHTDRKV 93 >gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] Length = 1232 Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 R G+H+V+ HG+G E+ ++ V G E+ VI + K Sbjct: 548 LRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSK 588 >gi|157128583|ref|XP_001655140.1| cdk8 [Aedes aegypti] gi|108882204|gb|EAT46429.1| cdk8 [Aedes aegypti] Length = 507 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 HR +S K Y+ +Q+ + L+ REIA + + P INLI V LS K Sbjct: 45 HRKESNDTKDYALKQIEGTGLSMSACREIALLRELKHPNVINLIRVFLSHTDRKV 99 >gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] Length = 1218 Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 R G+H+V+ HG+G E+ ++ V G E+ VI + K Sbjct: 530 LRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSK 570 >gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440] gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440] Length = 1216 Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 R G+H+V+ HG+G E+ ++ V G E+ VI + K Sbjct: 528 LRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSK 568 >gi|308062834|gb|ADO04722.1| transcription-repair coupling factor [Helicobacter pylori Cuz20] Length = 999 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKV 59 +QK GE +V+ +GVG +++ + V G K +F IA F +DK+ L V Sbjct: 351 RQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPV 407 >gi|309777118|ref|ZP_07672082.1| probable transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915127|gb|EFP60903.1| probable transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 165 Score = 34.3 bits (77), Expect = 7.4, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%) Query: 94 TMW----SRRAQEYDAKINSGDLIAIAEVVRDLH-----RTDSQPEKSYSERQLYESALN 144 T W +R +E+ + GD IA+ V++ ++ + ++ + SY++ ++E A Sbjct: 77 TNWITDKKKREEEFRNALRCGDCIALVRVMKTIYAVKEEKARNRKQLSYTDHSIFEQAQQ 136 Query: 145 RMVREIAAVNSISEPEAINLIEVNLS 170 +++ EIA IS EA + I LS Sbjct: 137 QLLEEIAFGAQISVEEADDYIRKKLS 162 >gi|317010243|gb|ADU80823.1| transcription-repair coupling factor [Helicobacter pylori India7] Length = 999 Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKV 59 +QK GE +V+ +GVG +++ + V G K +F IA F +DK+ L V Sbjct: 351 RQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPV 407 >gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] Length = 1209 Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+H+V+ HGVG E+ ++ V G E+ V+ + K Sbjct: 516 LKPGDHVVHEQHGVGRFVEMMQRTVGGATREYLVLEYAASK 556 >gi|188528343|ref|YP_001911030.1| transcription-repair coupling factor [Helicobacter pylori Shi470] gi|188144583|gb|ACD49000.1| transcription-repair coupling factor [Helicobacter pylori Shi470] Length = 999 Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKV 59 +QK GE +V+ +GVG +++ + V G K +F IA F +DK+ L V Sbjct: 351 RQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPV 407 >gi|239627382|ref|ZP_04670413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517528|gb|EEQ57394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 34.3 bits (77), Expect = 7.7, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 6/116 (5%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFVIA-FDKDK-MCLKVPVGKAIDIGMR 70 F+ GE I+Y GV + +I + + +L ++++ ++KD +C+ V K + G+ Sbjct: 2 FKKGEFILYGTVGVCQVEKISRTDFSDNDRLYYYLVPRYEKDTTICIPVDSDKVMMRGIM 61 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +A +A V K R Q Y I SGD + +A +++++ R + Sbjct: 62 SRKDAERFVKAWPDVECKEYAND---RERPQAYKEAIQSGDCLELASMIKEISRME 114 >gi|317179751|dbj|BAJ57539.1| transcription-repair coupling factor [Helicobacter pylori F30] Length = 999 Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKV 59 +QK GE +V+ +GVG +++ + V G K +F IA F +DK+ L V Sbjct: 351 RQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPV 407 >gi|308064333|gb|ADO06220.1| transcription-repair coupling factor [Helicobacter pylori Sat464] Length = 999 Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKV 59 +QK GE +V+ +GVG +++ + V G K +F IA F +DK+ L V Sbjct: 351 RQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPV 407 >gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] Length = 985 Score = 34.3 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 25/37 (67%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 G+++++P HG+G I+ +EV G+K ++ V+ + D Sbjct: 331 GDYLIHPEHGIGRFLGIETREVLGVKRDYLVLQYAGD 367 >gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC 824] gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum ATCC 824] gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum EA 2018] Length = 1171 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + G++IV+ HG+G IK+ EV G K ++ +++ D L VPV Sbjct: 502 LKPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELSYAVDDK-LYVPV 548 >gi|331009405|gb|EGH89461.1| aldehyde dehydrogenase family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 497 Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Query: 16 TGEHIVYPA--HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV----PVGKAIDIGM 69 TG V P GV +I ++E+ G L V+ FD D+ +++ P G A +G Sbjct: 378 TGGTYVEPTIFDGVNNAMKIAQEEIFGPVLS--VLTFDSDEEAIQIANDTPYGLAAAVGT 435 Query: 70 RKLSEAHFVERALK 83 +S AH +AL+ Sbjct: 436 ANISRAHLTAKALR 449 Searching..................................................done Results from round 2 >gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040094|gb|ACT56890.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 188 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 188/188 (100%), Positives = 188/188 (100%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP Sbjct: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST Sbjct: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 Query: 181 SENQDKAA 188 SENQDKAA Sbjct: 181 SENQDKAA 188 >gi|315122139|ref|YP_004062628.1| transcriptional regulator CarD family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495541|gb|ADR52140.1| transcriptional regulator CarD family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 188 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 171/188 (90%), Positives = 179/188 (95%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ MRQGF+TGEHIVYP HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP Sbjct: 1 MTVQQKKSMMRQGFKTGEHIVYPTHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+RT++QPEKSYSERQLYESALNRMVRE+AAVNSISEPEAI+LIEVNLSSK K EK T Sbjct: 121 DLYRTENQPEKSYSERQLYESALNRMVREVAAVNSISEPEAIDLIEVNLSSKRPKDEKPT 180 Query: 181 SENQDKAA 188 +ENQ KAA Sbjct: 181 NENQCKAA 188 >gi|222150214|ref|YP_002551171.1| transcriptional regulator CarD family [Agrobacterium vitis S4] gi|221737196|gb|ACM38159.1| transcriptional regulator CarD family [Agrobacterium vitis S4] Length = 223 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 141/190 (74%), Positives = 162/190 (85%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI FDKDKM LKVP Sbjct: 35 MTTQQKKSSTRQGFKTGEAIVYPAHGVGTITAIEEQEVAGMKLELFVIDFDKDKMRLKVP 94 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 95 VTKAVTIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 154 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R + QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ K K KS Sbjct: 155 DLFRAEHQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLA-KGPKRGKSV 213 Query: 181 SENQ--DKAA 188 E++ ++AA Sbjct: 214 EEDETQEEAA 223 >gi|163759997|ref|ZP_02167081.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43] gi|162282955|gb|EDQ33242.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43] Length = 189 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 135/190 (71%), Positives = 159/190 (83%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE FVERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKASTIGMRKLSETDFVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM RE+AAVN +S+ EA+ LIE NL+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMARELAAVNKMSDTEAVRLIETNLN-KGPKRGKAA 179 Query: 181 SEN--QDKAA 188 E+ Q++AA Sbjct: 180 DEDGAQEEAA 189 >gi|307943601|ref|ZP_07658945.1| transcription factor CarD [Roseibium sp. TrichSKD4] gi|307773231|gb|EFO32448.1| transcription factor CarD [Roseibium sp. TrichSKD4] Length = 194 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 121/195 (62%), Positives = 146/195 (74%), Gaps = 8/195 (4%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F+KDKM L+VP Sbjct: 1 MASTTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEKDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR Sbjct: 61 VAKIASVGMRKLGDPDAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+DSQPE+SYSERQLYE+AL+R+ REIAAVN SE EA IE L KS K+ Sbjct: 121 DLYRSDSQPEQSYSERQLYEAALDRLAREIAAVNKCSETEATKQIEQTLE-KSPNRPKAP 179 Query: 181 SE-------NQDKAA 188 +E Q++AA Sbjct: 180 AEADSTGSDGQEEAA 194 >gi|227823778|ref|YP_002827751.1| putative transcriptional regulator, CarD family [Sinorhizobium fredii NGR234] gi|227342780|gb|ACP26998.1| putative transcriptional regulator, CarD family [Sinorhizobium fredii NGR234] Length = 189 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 139/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI FDKDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFDKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEANLN-KGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDTQDEAA 189 >gi|110635707|ref|YP_675915.1| CarD family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286691|gb|ABG64750.1| transcriptional regulator, CarD family [Chelativorans sp. BNC1] Length = 190 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 130/187 (69%), Positives = 155/187 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ A RQGF+TGE IVYPAHGVG I I++QEVAG KLE FVI F KDKM LKVP Sbjct: 1 MATQQKKSAQRQGFKTGEFIVYPAHGVGQIVAIEDQEVAGHKLELFVIDFQKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 VGKA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 61 VGKATAIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ + K+ Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIETNLAKGPRRGTKAE 180 Query: 181 SENQDKA 187 +++ +K Sbjct: 181 NDDAEKE 187 >gi|86747677|ref|YP_484173.1| CarD family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570705|gb|ABD05262.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris HaA2] Length = 429 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 107/183 (58%), Positives = 140/183 (76%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 230 KKVVTQRQGFKASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 289 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R Sbjct: 290 ANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFR 349 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 +DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ ++ + Sbjct: 350 SDSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEADAE 409 Query: 185 DKA 187 A Sbjct: 410 GDA 412 >gi|150398306|ref|YP_001328773.1| CarD family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029821|gb|ABR61938.1| transcriptional regulator, CarD family [Sinorhizobium medicae WSM419] Length = 189 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 137/190 (72%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E +L+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEAHLN-KGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDAQDEAA 189 >gi|297180170|gb|ADI16392.1| transcriptional regulators, similar to M. xanthus card [uncultured bacterium HF130_12L15] Length = 193 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 130/187 (69%), Positives = 154/187 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ A R GF+T E+IVYPAHGVG I I+EQEVAG KLE FVI F KDKM LKVP Sbjct: 1 MATQQKKTAARNGFKTAEYIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFQKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 61 VAKAASIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPRRGVKAD 180 Query: 181 SENQDKA 187 +E + +A Sbjct: 181 NEGEPEA 187 >gi|299132816|ref|ZP_07026011.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2] gi|298592953|gb|EFI53153.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2] Length = 403 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 107/172 (62%), Positives = 138/172 (80%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+T E +VYPAHGVG I I+EQE+AG LE FVI+F KDKM L+VP K Sbjct: 201 KKVLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGATLELFVISFIKDKMTLRVPTAKV 260 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I++GMRKLS+ V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 261 INVGMRKLSDPALVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 320 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E NL+ + Sbjct: 321 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVEANLAKSPRRG 372 >gi|15967010|ref|NP_387363.1| hypothetical protein SMc03874 [Sinorhizobium meliloti 1021] gi|307302478|ref|ZP_07582235.1| transcriptional regulator, CarD family [Sinorhizobium meliloti BL225C] gi|307316192|ref|ZP_07595636.1| transcriptional regulator, CarD family [Sinorhizobium meliloti AK83] gi|15076283|emb|CAC47836.1| Hypothetical protein SMc03874 [Sinorhizobium meliloti 1021] gi|306898032|gb|EFN28774.1| transcriptional regulator, CarD family [Sinorhizobium meliloti AK83] gi|306903148|gb|EFN33738.1| transcriptional regulator, CarD family [Sinorhizobium meliloti BL225C] Length = 189 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 138/190 (72%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLVEANLN-KGPKRGKAI 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDAQDEAA 189 >gi|163839171|ref|YP_001623576.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952647|gb|ABY22162.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 301 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 82/166 (49%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + + F GE +VYP HG I EIK + + G + + + + + ++VP Sbjct: 136 GKGRIHMVFEIGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVD 195 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R + +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R Sbjct: 196 LVGVRDVVGKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRR 255 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 D S E+++ A ++ E+A E +A +++ L+S Sbjct: 256 DHDRGLSAGEKRMLAKARQILISELALAEKTDEEKAATVLDEVLAS 301 >gi|91974760|ref|YP_567419.1| transcription factor CarD [Rhodopseudomonas palustris BisB5] gi|91681216|gb|ABE37518.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisB5] Length = 432 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 106/180 (58%), Positives = 139/180 (77%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+ GE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 235 KKAVTQRQGFKAGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 294 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R Sbjct: 295 ANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFR 354 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 ++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ + + Sbjct: 355 SESQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEVDAE 414 >gi|254234156|ref|ZP_04927480.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C] gi|124603824|gb|EAY61787.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C] Length = 174 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 92/173 (53%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 + + +R + + F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP Sbjct: 2 LAWSNERGSNQMIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVP 61 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 A +G+R + +++ +++R + T WSRR + K+ SGD+ +AEVVR Sbjct: 62 AENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVR 121 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 DL R D + S E+++ A +V E+A S + +A +++ L++ S Sbjct: 122 DLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 174 >gi|304394153|ref|ZP_07376076.1| CarD family transcriptional regulator [Ahrensia sp. R2A130] gi|303293593|gb|EFL87970.1| CarD family transcriptional regulator [Ahrensia sp. R2A130] Length = 193 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 119/184 (64%), Positives = 142/184 (77%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 K+ RQGF+TGE IVYPAHGVG ITEI++QEVAG +LE FVI F KDKM L+VPV K Sbjct: 2 AAKKATQRQGFKTGEFIVYPAHGVGQITEIEQQEVAGFELELFVIEFAKDKMTLRVPVPK 61 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 +GMRKL+E V+++L V+G+AR+KRTMWSRRAQEYDAKINSGDLI IAEVVRDL Sbjct: 62 IESVGMRKLAEPKLVDKSLMTVQGRARIKRTMWSRRAQEYDAKINSGDLIQIAEVVRDLF 121 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 R+D+QPE+SYSERQLYE+AL RM REI+ V ISE EA+ LIE NL+ + K E Sbjct: 122 RSDTQPEQSYSERQLYEAALERMAREISVVKKISETEAVQLIEANLAKGPRRGPKPEGEE 181 Query: 184 QDKA 187 +D A Sbjct: 182 EDGA 185 >gi|225628327|ref|ZP_03786361.1| transcriptional regulator [Brucella ceti str. Cudo] gi|225616173|gb|EEH13221.1| transcriptional regulator [Brucella ceti str. Cudo] Length = 250 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 132/192 (68%), Positives = 157/192 (81%), Gaps = 5/192 (2%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 60 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 119 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 120 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 179 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K K+ Sbjct: 180 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGPKRGKA 238 Query: 180 TSE---NQDKAA 188 +E ++ +AA Sbjct: 239 EAELDDDEVEAA 250 >gi|86359604|ref|YP_471496.1| CarD family transcriptional regulator [Rhizobium etli CFN 42] gi|86283706|gb|ABC92769.1| probable transcriptional regulator protein, CarD family [Rhizobium etli CFN 42] Length = 190 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 139/191 (72%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLN-KGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|327191760|gb|EGE58762.1| CarD family transcriptional regulator [Rhizobium etli CNPAF512] Length = 199 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 139/191 (72%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 10 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 69 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 70 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 129 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K+ Sbjct: 130 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLN-KGPKRGKA 188 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 189 IEEDDSQDEAA 199 >gi|15890014|ref|NP_355695.1| CarD family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157987|gb|AAK88480.1| transcriptional regulator, CarD family [Agrobacterium tumefaciens str. C58] Length = 189 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 140/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLA-KGPKRGKTV 179 Query: 181 SEN--QDKAA 188 E+ QD+AA Sbjct: 180 EEDDSQDEAA 189 >gi|75674610|ref|YP_317031.1| transcription factor CarD [Nitrobacter winogradskyi Nb-255] gi|74419480|gb|ABA03679.1| transcriptional regulator, CarD family [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 109/182 (59%), Positives = 141/182 (77%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+TGE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 87 KKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 146 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 147 ANVGMRKLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 206 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 ++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ + K+ + + Sbjct: 207 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLAKSPRRGAKAEAGGE 266 Query: 185 DK 186 Sbjct: 267 AD 268 >gi|116254341|ref|YP_770179.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|209551385|ref|YP_002283302.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241206827|ref|YP_002977923.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258989|emb|CAK10098.1| putative CarD family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|209537141|gb|ACI57076.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240860717|gb|ACS58384.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 190 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 140/191 (73%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLN-KGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|90422072|ref|YP_530442.1| CarD family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104086|gb|ABD86123.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisB18] Length = 365 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 140/184 (76%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 +K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 167 AKKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFMKDKMTLRVPTAK 226 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 ++GMRKLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+ Sbjct: 227 VANVGMRKLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 286 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 R+DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ E Sbjct: 287 RSDSQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKTEVEA 346 Query: 184 QDKA 187 A Sbjct: 347 DADA 350 >gi|240851257|ref|YP_002972660.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup] gi|240268380|gb|ACS51968.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup] Length = 194 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 120/188 (63%), Positives = 147/188 (78%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ +GMRKLS + VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKALSVGMRKLSASDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K + K+ Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180 Query: 181 SENQDKAA 188 E D+++ Sbjct: 181 REETDESS 188 >gi|190893877|ref|YP_001980419.1| transcriptional regulator protein, CarD family [Rhizobium etli CIAT 652] gi|190699156|gb|ACE93241.1| probable transcriptional regulator protein, CarD family [Rhizobium etli CIAT 652] Length = 190 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 137/191 (71%), Positives = 162/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+ M REIAAVN++SE +A+ L+E NL+ K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDSMAREIAAVNNMSETDAVRLVETNLN-KGPKRGKA 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 IEEDDSQDEAA 190 >gi|325294135|ref|YP_004279999.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3] gi|325061988|gb|ADY65679.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3] Length = 189 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 139/190 (73%), Positives = 161/190 (84%), Gaps = 3/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ K K K+ Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLA-KGPKRGKAV 179 Query: 181 SEN--QDKAA 188 E+ Q++AA Sbjct: 180 EEDDSQEEAA 189 >gi|298293646|ref|YP_003695585.1| CarD family transcriptional regulator [Starkeya novella DSM 506] gi|296930157|gb|ADH90966.1| transcriptional regulator, CarD family [Starkeya novella DSM 506] Length = 200 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 147/179 (82%), Gaps = 1/179 (0%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K RQGF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI F+KDKM L+V Sbjct: 1 MTSTKKPSTNIRQGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVIHFEKDKMTLRV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV K +GMRKLSE +++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVV Sbjct: 61 PVPKIASVGMRKLSEPTILKKALETLKGRARVKRTMWSRRAQEYEAKINSGDLVAISEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 RDL+R+++QPE+SYSERQLYE+AL+RM RE+AAV++++E EAI LIE NL + K Sbjct: 121 RDLYRSEAQPEQSYSERQLYEAALDRMARELAAVDNLTETEAIKLIEQNLLKGPRRVGK 179 >gi|49474702|ref|YP_032744.1| transcriptional factor regulator [Bartonella quintana str. Toulouse] gi|49240206|emb|CAF26674.1| transcriptional factor regulator [Bartonella quintana str. Toulouse] Length = 194 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 121/187 (64%), Positives = 146/187 (78%), Gaps = 1/187 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHRTSSNAKGFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R++ QPE+SYSERQLY +AL+RM REIA +NS+SE EA+NLIE++LS+K K E T Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALDRMAREIAVINSLSETEAVNLIEMHLSNK-PKCEFKT 179 Query: 181 SENQDKA 187 ++ A Sbjct: 180 KSDETNA 186 >gi|319781058|ref|YP_004140534.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166946|gb|ADV10484.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 129/181 (71%), Positives = 150/181 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T Q+K A R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP Sbjct: 4 ITPQKKSTAARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFSKDKMRLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKAD 183 Query: 181 S 181 + Sbjct: 184 N 184 >gi|220921710|ref|YP_002497011.1| CarD family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946316|gb|ACL56708.1| transcriptional regulator, CarD family [Methylobacterium nodulans ORS 2060] Length = 197 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 116/187 (62%), Positives = 151/187 (80%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR Sbjct: 61 TAKANAVGMRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L+ + + + Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSLAKSPRRAKSAE 180 Query: 181 SENQDKA 187 E + A Sbjct: 181 VEGEPDA 187 >gi|13473303|ref|NP_104870.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099] gi|260461457|ref|ZP_05809704.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum WSM2075] gi|14024051|dbj|BAB50656.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099] gi|259032527|gb|EEW33791.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum WSM2075] Length = 193 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 128/181 (70%), Positives = 149/181 (82%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T Q+K R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP Sbjct: 4 ITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+ Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKAD 183 Query: 181 S 181 + Sbjct: 184 N 184 >gi|222087730|ref|YP_002546267.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725178|gb|ACM28334.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 190 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 141/191 (73%), Positives = 161/191 (84%), Gaps = 4/191 (2%) Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT QQK+ A R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV Sbjct: 1 MTTQQKKPSAARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ K K K Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLN-KGPKRGKV 179 Query: 180 TSEN--QDKAA 188 E+ QD+AA Sbjct: 180 VEEDDSQDEAA 190 >gi|118591279|ref|ZP_01548677.1| transcriptional regulator, CarD family protein [Stappia aggregata IAM 12614] gi|118435951|gb|EAV42594.1| transcriptional regulator, CarD family protein [Stappia aggregata IAM 12614] Length = 194 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 114/176 (64%), Positives = 140/176 (79%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ+VAG LE VI F++DKM L+VP Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQKVAGHSLELLVIVFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 DL R+++QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ S+ Sbjct: 121 DLFRSENQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLAKSPSRI 176 >gi|328542018|ref|YP_004302127.1| CarD-like transcriptional regulator family [polymorphum gilvum SL003B-26A1] gi|326411768|gb|ADZ68831.1| CarD-like transcriptional regulator family [Polymorphum gilvum SL003B-26A1] Length = 192 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 117/186 (62%), Positives = 146/186 (78%), Gaps = 1/186 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGEHIVYP+HGVG IT I+EQ VAG LE VI+F+KDKM L+VP Sbjct: 1 MATITKKAAQRQGFKTGEHIVYPSHGVGQITAIEEQSVAGHSLELLVISFEKDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL++A V++AL+ VRG+ R+KRTMWSRRAQEY+AKINSGDLI+I+EVVR Sbjct: 61 VAKIATVGMRKLADAPTVKKALETVRGRPRIKRTMWSRRAQEYEAKINSGDLISISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+D+QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ ++ K Sbjct: 121 DLYRSDTQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLA-RTPNRAKDA 179 Query: 181 SENQDK 186 D+ Sbjct: 180 EAGDDE 185 >gi|49476179|ref|YP_034220.1| transcriptional factor regulator [Bartonella henselae str. Houston-1] gi|49238987|emb|CAF28287.1| Transcriptional factor regulator [Bartonella henselae str. Houston-1] Length = 194 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 120/183 (65%), Positives = 141/183 (77%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSNAKGFSTSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R+D QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS K + K+ Sbjct: 121 DLFRSDLQPEQSYSERQLYIAALERMAREIAVINSLSETEAINLIEMHLSQKPKRQFKTK 180 Query: 181 SEN 183 + Sbjct: 181 RDE 183 >gi|90420275|ref|ZP_01228183.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans SI85-9A1] gi|90335609|gb|EAS49359.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 127/176 (72%), Positives = 147/176 (83%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 QK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVPV Sbjct: 2 SSQKKASNRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVA 61 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 KA +GMRKLSE FVER+LK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVRDL Sbjct: 62 KAESVGMRKLSETDFVERSLKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVRDL 121 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 +R DSQPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE+NL+ + K Sbjct: 122 YRADSQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVQLIELNLNKGPKRVAK 177 >gi|146337765|ref|YP_001202813.1| CarD family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190571|emb|CAL74573.1| putative transcriptional regulatory protein, CarD family [Bradyrhizobium sp. ORS278] Length = 204 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 106/180 (58%), Positives = 138/180 (76%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K + Sbjct: 1 MPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVAN 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++ Sbjct: 61 VGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSE 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ ++ + Sbjct: 121 SQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADAVAE 180 >gi|163869173|ref|YP_001610425.1| transcriptional factor [Bartonella tribocorum CIP 105476] gi|161018872|emb|CAK02430.1| transcriptional factor [Bartonella tribocorum CIP 105476] Length = 194 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 119/186 (63%), Positives = 143/186 (76%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ +GMRKLS VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR Sbjct: 61 IAKALSVGMRKLSAGDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K + K+ Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180 Query: 181 SENQDK 186 E + Sbjct: 181 REETVE 186 >gi|254504462|ref|ZP_05116613.1| CarD-like transcriptional regulator family [Labrenzia alexandrii DFL-11] gi|222440533|gb|EEE47212.1| CarD-like transcriptional regulator family [Labrenzia alexandrii DFL-11] Length = 199 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 115/177 (64%), Positives = 140/177 (79%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F++DKM L+VP Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKL + V++AL+ V+G+ R+KRTMWSRRAQEY+AKINSGDLIAI+EVVR Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVQGRPRIKRTMWSRRAQEYEAKINSGDLIAISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 DL R++SQPE+SYSERQLYE+AL+RM REIAAVN SE EAI IE NL+ S+ + Sbjct: 121 DLFRSESQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAIKEIEQNLAKSPSRIK 177 >gi|72163306|ref|YP_290963.1| CarD family transcriptional regulator [Thermobifida fusca YX] gi|71917038|gb|AAZ56940.1| transcriptional regulator, CarD family [Thermobifida fusca YX] Length = 160 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 85/159 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + + V+ DK + ++VP A ++G+R Sbjct: 1 MTFKVGDTVVYPHHGAARIEAIETRTIKGEEKTYLVLKVDKGDLTVRVPADNAEEVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A +E +A L++ L+ Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLA 159 >gi|120406288|ref|YP_956117.1| CarD family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959106|gb|ABM16111.1| transcriptional regulator, CarD family [Mycobacterium vanbaalenii PYR-1] Length = 162 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVSQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162 >gi|296268490|ref|YP_003651122.1| CarD family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091277|gb|ADG87229.1| transcriptional regulator, CarD family [Thermobispora bispora DSM 43833] Length = 163 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 85/161 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAARIEAITTRTINGQEKTYLVLKVDKGDLTVQVPAENAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +ER ++R + T WSRR + K+ SGD+ +AEVVRDL+R D + Sbjct: 61 VVGQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLYRRDKERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLNSA 161 >gi|145222036|ref|YP_001132714.1| CarD family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446222|ref|YP_004079101.1| CarD family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214522|gb|ABP43926.1| transcriptional regulator, CarD family [Mycobacterium gilvum PYR-GCK] gi|315264525|gb|ADU01267.1| transcriptional regulator, CarD family [Mycobacterium sp. Spyr1] Length = 162 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162 >gi|158425667|ref|YP_001526959.1| transcription factor protein [Azorhizobium caulinodans ORS 571] gi|158332556|dbj|BAF90041.1| transcription factor protein [Azorhizobium caulinodans ORS 571] Length = 198 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 116/187 (62%), Positives = 147/187 (78%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M+ ++ R GF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI+F+KDKM L+VP Sbjct: 1 MSTKKSSAQARLGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVISFEKDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKLSE V +AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDLIAI+EVVR Sbjct: 61 VPKIASVGMRKLSEGPVVTKALETLKGRARVKRTMWSRRAQEYEAKINSGDLIAISEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+D+QPE+SYSERQLYE+AL+RM RE++AV +I+E E++ LIE NL + Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMARELSAVQNITETESVKLIEQNLQKGPKRGAGKA 180 Query: 181 SENQDKA 187 E +D Sbjct: 181 EEVEDSE 187 >gi|111021431|ref|YP_704403.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1] gi|226363787|ref|YP_002781569.1| hypothetical protein ROP_43770 [Rhodococcus opacus B4] gi|110820961|gb|ABG96245.1| probable transcriptional regulator, CarD family protein [Rhodococcus jostii RHA1] gi|226242276|dbj|BAH52624.1| hypothetical protein [Rhodococcus opacus B4] Length = 162 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 83/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAEGTDSDKAETILDEVLAAAS 162 >gi|118470459|ref|YP_890299.1| CarD family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171746|gb|ABK72642.1| transcriptional regulator, CarD family protein [Mycobacterium smegmatis str. MC2 155] Length = 162 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAENTDDAKAETILDEVLAAAS 162 >gi|226304175|ref|YP_002764133.1| hypothetical protein RER_06860 [Rhodococcus erythropolis PR4] gi|229494349|ref|ZP_04388112.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis SK121] gi|226183290|dbj|BAH31394.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229318711|gb|EEN84569.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis SK121] Length = 162 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 83/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAEGTDTEKAETILDEVLAAAS 162 >gi|148258713|ref|YP_001243298.1| CarD family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410886|gb|ABQ39392.1| transcriptional regulator, CarD family [Bradyrhizobium sp. BTAi1] Length = 278 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 107/183 (58%), Positives = 141/183 (77%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 ++K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 72 EKKLPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 131 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+ Sbjct: 132 VANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 191 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 R++SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ ++ Sbjct: 192 RSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADA 251 Query: 184 QDK 186 + Sbjct: 252 VAE 254 >gi|115522154|ref|YP_779065.1| CarD family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516101|gb|ABJ04085.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris BisA53] Length = 358 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 109/176 (61%), Positives = 138/176 (78%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 ++K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 161 EKKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 220 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 ++GMRKLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL Sbjct: 221 VTNVGMRKLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLF 280 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 R+DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ Sbjct: 281 RSDSQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKT 336 >gi|297563240|ref|YP_003682214.1| CarD family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847688|gb|ADH69708.1| transcriptional regulator, CarD family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 160 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 85/160 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + V+ DK + ++VP A D+G+R Sbjct: 1 MAFKVGDTVVYPHHGAARIEAIETRNIKGEDRIYLVLRVDKGDLTVRVPAANAEDVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A L++ L++ Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLTT 160 >gi|170742914|ref|YP_001771569.1| CarD family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197188|gb|ACA19135.1| transcriptional regulator, CarD family [Methylobacterium sp. 4-46] Length = 197 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 150/179 (83%), Gaps = 1/179 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR Sbjct: 61 TAKANAVGMRKLAEPDLVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L+ KS + K+ Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSLA-KSPRRAKN 178 >gi|54022399|ref|YP_116641.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013907|dbj|BAD55277.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 162 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 84/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDRVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + +A L++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAEGTDDGKAETLLDEVLAAAS 162 >gi|21222627|ref|NP_628406.1| transcriptional factor regulator [Streptomyces coelicolor A3(2)] gi|29830513|ref|NP_825147.1| CarD-like transcriptional regulator [Streptomyces avermitilis MA-4680] gi|182437804|ref|YP_001825523.1| putative CarD-like transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239930480|ref|ZP_04687433.1| putative CarD-like transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|239942338|ref|ZP_04694275.1| putative CarD-like transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988803|ref|ZP_04709467.1| putative CarD-like transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|254387144|ref|ZP_05002415.1| transcriptional factor regulator [Streptomyces sp. Mg1] gi|254388532|ref|ZP_05003766.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC 27064] gi|256786303|ref|ZP_05524734.1| putative CarD-like transcriptional regulator [Streptomyces lividans TK24] gi|282860513|ref|ZP_06269579.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE] gi|289770194|ref|ZP_06529572.1| transcriptional factor regulator [Streptomyces lividans TK24] gi|290959414|ref|YP_003490596.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|291438841|ref|ZP_06578231.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC 14672] gi|291445795|ref|ZP_06585185.1| transcriptional factor regulator [Streptomyces roseosporus NRRL 15998] gi|294630053|ref|ZP_06708613.1| CarD family transcriptional regulator [Streptomyces sp. e14] gi|294814053|ref|ZP_06772696.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus ATCC 27064] gi|295838029|ref|ZP_06824962.1| CarD family transcriptional regulator [Streptomyces sp. SPB74] gi|297193588|ref|ZP_06910986.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297200594|ref|ZP_06917991.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|302520127|ref|ZP_07272469.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302535866|ref|ZP_07288208.1| transcriptional regulator [Streptomyces sp. C] gi|302552344|ref|ZP_07304686.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302559957|ref|ZP_07312299.1| CarD family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|318058492|ref|ZP_07977215.1| transcriptional regulator [Streptomyces sp. SA3_actG] gi|318075598|ref|ZP_07982930.1| transcriptional regulator [Streptomyces sp. SA3_actF] gi|326442457|ref|ZP_08217191.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326778439|ref|ZP_08237704.1| transcriptional regulator, CarD family [Streptomyces cf. griseus XylebKG-1] gi|329936179|ref|ZP_08285972.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|7242753|emb|CAB77326.1| putative transcriptional factor regulator [Streptomyces coelicolor A3(2)] gi|29607625|dbj|BAC71682.1| putative CarD-like transcriptional regulator [Streptomyces avermitilis MA-4680] gi|178466320|dbj|BAG20840.1| putative CarD-like transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194345960|gb|EDX26926.1| transcriptional factor regulator [Streptomyces sp. Mg1] gi|197699155|gb|EDY46088.1| CarD family transcriptional regulator [Streptomyces sp. SPB74] gi|197702253|gb|EDY48065.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC 27064] gi|197709720|gb|EDY53754.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197718134|gb|EDY62042.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260648940|emb|CBG72054.1| putative transcriptional regulator [Streptomyces scabiei 87.22] gi|282564249|gb|EFB69785.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE] gi|289700393|gb|EFD67822.1| transcriptional factor regulator [Streptomyces lividans TK24] gi|291341736|gb|EFE68692.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC 14672] gi|291348742|gb|EFE75646.1| transcriptional factor regulator [Streptomyces roseosporus NRRL 15998] gi|292833386|gb|EFF91735.1| CarD family transcriptional regulator [Streptomyces sp. e14] gi|294326652|gb|EFG08295.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus ATCC 27064] gi|297158399|gb|ADI08111.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] gi|302429022|gb|EFL00838.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302444761|gb|EFL16577.1| transcriptional regulator [Streptomyces sp. C] gi|302469962|gb|EFL33055.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302477575|gb|EFL40668.1| CarD family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|315455531|emb|CBY85030.1| hypothetical protein [Streptomyces sp. ATCC 55098] gi|326658772|gb|EGE43618.1| transcriptional regulator, CarD family [Streptomyces cf. griseus XylebKG-1] gi|328884013|emb|CCA57252.1| CarD transcriptional regulator [Streptomyces venezuelae ATCC 10712] gi|329304289|gb|EGG48169.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 160 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|271962514|ref|YP_003336710.1| carD family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505689|gb|ACZ83967.1| CarD family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 160 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 83/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R Sbjct: 1 MTFQVGDTVVYPHHGAARIEAITTRTIKGEERTYLVLKVDKGDLTVQVPADNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +ER ++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLNS 160 >gi|209883217|ref|YP_002287074.1| transcriptional regulator of CarD family [Oligotropha carboxidovorans OM5] gi|209871413|gb|ACI91209.1| transcriptional regulator of CarD family [Oligotropha carboxidovorans OM5] Length = 323 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 108/172 (62%), Positives = 138/172 (80%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+T E +VYPAHGVG I I+EQE+AG +LE FVI+F KDKM L+VP K Sbjct: 119 KKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGARLELFVISFIKDKMTLRVPTAKV 178 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I++GMRKLS+ V+RAL ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 179 INVGMRKLSDPALVKRALDTLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 238 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ++SQPE+SYSERQLYE+AL+R+ REIA V I+E EAI +E NL+ + Sbjct: 239 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAIKEVEANLAKSPRRG 290 >gi|85713774|ref|ZP_01044764.1| transcription factor CarD [Nitrobacter sp. Nb-311A] gi|85699678|gb|EAQ37545.1| transcription factor CarD [Nitrobacter sp. Nb-311A] Length = 220 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 109/182 (59%), Positives = 140/182 (76%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 22 KKVLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKI 81 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 82 ANVGMRKLSEPDLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 141 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 ++SQPE+SYSERQLYE+AL+R+ REIA V ++E EAI IE L+ + K+ + + Sbjct: 142 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAIKEIEGQLAKSPRRGAKAELDAE 201 Query: 185 DK 186 Sbjct: 202 AD 203 >gi|333026128|ref|ZP_08454192.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071] gi|332745980|gb|EGJ76421.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071] Length = 160 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIDAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|300024663|ref|YP_003757274.1| CarD family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526484|gb|ADJ24953.1| transcriptional regulator, CarD family [Hyphomicrobium denitrificans ATCC 51888] Length = 333 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 106/188 (56%), Positives = 140/188 (74%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 + Q+K R GF+ E +VYPAHGVG I I+EQE+AGM LE FVI FDK+K+ L+VP Sbjct: 146 LAVQKKPVNQRHGFKANEFVVYPAHGVGRIVGIEEQEIAGMSLELFVITFDKEKLTLRVP 205 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 GK +GMRKL++ V++A++ ++G+AR+KRTMWSRRAQEY AKINSGDLI+IAEVVR Sbjct: 206 TGKLASVGMRKLADEGLVKKAMETLKGRARIKRTMWSRRAQEYVAKINSGDLISIAEVVR 265 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+++QPE+SYSERQLYE AL+RM RE+AAV + E A+ I LS + + Sbjct: 266 DLYRSEAQPEQSYSERQLYEDALDRMARELAAVEKLDERGAVQRITEILSKSAKGRRLAD 325 Query: 181 SENQDKAA 188 SE+ +AA Sbjct: 326 SESVGEAA 333 >gi|92116128|ref|YP_575857.1| CarD family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799022|gb|ABE61397.1| transcriptional regulator, CarD family [Nitrobacter hamburgensis X14] Length = 259 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 109/177 (61%), Positives = 139/177 (78%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGFRT E +VYPAHGVG I I+EQE+AG +LE FVI F KDKM L+VP K Sbjct: 63 KKVLTQRQGFRTNEFVVYPAHGVGQILAIEEQEIAGARLELFVINFMKDKMTLRVPTAKI 122 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 123 ANVGMRKLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 182 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 ++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ + K+ S Sbjct: 183 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLAKSPRRGAKAES 239 >gi|154244145|ref|YP_001415103.1| CarD family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158230|gb|ABS65446.1| transcriptional regulator, CarD family [Xanthobacter autotrophicus Py2] Length = 206 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 115/183 (62%), Positives = 146/183 (79%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +K R GF+TGEHIVYP+HGVG I I+EQEVAG KLE FVI+F+KDKM L+VPV Sbjct: 13 SAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVP 72 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 K +GMRKLSE + V+++L+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVVRDL Sbjct: 73 KIATVGMRKLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDL 132 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 +R+D+QPE+SYSERQLYE+AL+RM RE++AVN+I+E EA+ LIE NL + E Sbjct: 133 YRSDAQPEQSYSERQLYEAALDRMARELSAVNNITETEAVKLIEQNLLKGPRRGTAKVVE 192 Query: 183 NQD 185 D Sbjct: 193 EAD 195 >gi|302544415|ref|ZP_07296757.1| CarD family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|307326973|ref|ZP_07606163.1| transcriptional regulator, CarD family [Streptomyces violaceusniger Tu 4113] gi|302462033|gb|EFL25126.1| CarD family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] gi|306887271|gb|EFN18267.1| transcriptional regulator, CarD family [Streptomyces violaceusniger Tu 4113] Length = 160 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A S +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAESTNEDKAEALLDEVLAS 160 >gi|254563203|ref|YP_003070298.1| carD family transcriptional regulator [Methylobacterium extorquens DM4] gi|254270481|emb|CAX26481.1| transcriptional regulator, CarD family [Methylobacterium extorquens DM4] Length = 224 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 111/176 (63%), Positives = 145/176 (82%), Gaps = 1/176 (0%) Query: 1 MTFQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V Sbjct: 29 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 88 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV Sbjct: 89 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 148 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + Sbjct: 149 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRR 204 >gi|134298063|ref|YP_001111559.1| CarD family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134050763|gb|ABO48734.1| transcriptional regulator, CarD family [Desulfotomaculum reducens MI-1] Length = 158 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 87/158 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ D+G+R + Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGKKRQYYILRLPIGDMKVMIPISNCDDVGLRGI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V L+++ G+ V W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 61 IDRDEVSTVLEVLEGQTTVMSGNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A ++ E+ + E +A +LI+ + Sbjct: 121 SGERKMLENARQILISELVLAAEMEETKARSLIDEVFA 158 >gi|170750107|ref|YP_001756367.1| CarD family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656629|gb|ACB25684.1| transcriptional regulator, CarD family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 114/177 (64%), Positives = 149/177 (84%), Gaps = 1/177 (0%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +GMR Sbjct: 12 RQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMR 71 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KL+E V++AL L+ G+AR+KRTMWSRRAQEY+AKINSGDL+A+ EVVRDL R+++QPE Sbjct: 72 KLAEPELVKKALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPE 131 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 +SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ KS + KS +E + +A Sbjct: 132 QSYSERQLYEAALDRIVREISSVNRITETEALKLIEQSLA-KSPRRAKSEAEPEAEA 187 >gi|319899401|ref|YP_004159498.1| transcriptional factor [Bartonella clarridgeiae 73] gi|319403369|emb|CBI76928.1| transcriptional factor [Bartonella clarridgeiae 73] Length = 191 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 114/187 (60%), Positives = 140/187 (74%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASPRNTSSSAKDFLTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ IGMRKLS V RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEV+R Sbjct: 61 IAKALSIGMRKLSTVDSVNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVIR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R+D QPE+SYSERQLY AL+RM REIA VNS++E EAINLIE +L+ KS KS Sbjct: 121 DLFRSDLQPEQSYSERQLYAIALDRMAREIAVVNSLTETEAINLIEKHLTKKSKSEFKSE 180 Query: 181 SENQDKA 187 + + A Sbjct: 181 IDEGNNA 187 >gi|269124964|ref|YP_003298334.1| CarD family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309922|gb|ACY96296.1| transcriptional regulator, CarD family [Thermomonospora curvata DSM 43183] Length = 160 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 83/159 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG I I+ + + G + V+ DK + ++VPV ++G+R Sbjct: 1 MTFTVGDTVVYPHHGAARIEAIETRTIKGEDKTYLVLKVDKGDLTVRVPVENVEEVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLEKVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A +E +A L++ L+ Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLA 159 >gi|311896848|dbj|BAJ29256.1| putative CarD family transcriptional regulator [Kitasatospora setae KM-6054] Length = 160 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + L+VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVQQGDLTLRVPAENAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAETLLDEVLAS 160 >gi|182680042|ref|YP_001834188.1| CarD family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635925|gb|ACB96699.1| transcriptional regulator, CarD family [Beijerinckia indica subsp. indica ATCC 9039] Length = 368 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 108/174 (62%), Positives = 136/174 (78%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A R GF+ E IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP KA+ + Sbjct: 179 AQRHGFKPLEFIVYPAHGVGQIIAIEEQEVAGFKLELFVISFVKDKMILKVPTPKAVSVR 238 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MRKL+EA +++AL+ + G+AR+KRTMWSRRAQEY+AKINSGDLIA+AEVVRDL+R+D+Q Sbjct: 239 MRKLAEADVIDKALETLTGRARIKRTMWSRRAQEYEAKINSGDLIAVAEVVRDLYRSDAQ 298 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 PE+SYSERQLYE+AL+R+ RE+AAV ++E E++ LIE L + E Sbjct: 299 PEQSYSERQLYEAALDRVARELAAVQKLTETESLKLIEAQLLKGPRRGGSKVEE 352 >gi|320009411|gb|ADW04261.1| transcriptional regulator, CarD family [Streptomyces flavogriseus ATCC 33331] Length = 160 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQEGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|240172169|ref|ZP_04750828.1| transcriptional regulator, CarD family protein [Mycobacterium kansasii ATCC 12478] gi|296166638|ref|ZP_06849065.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898010|gb|EFG77589.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 162 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A S + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|114705884|ref|ZP_01438787.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506] gi|114538730|gb|EAU41851.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506] Length = 204 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 122/176 (69%), Positives = 144/176 (81%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 K+ + +GF+TGE IVYPAHGVG I I+EQEVAGMKLE FV+ F+KDKM LKVPV Sbjct: 2 SSPKKASASKGFKTGESIVYPAHGVGKIVAIEEQEVAGMKLELFVVDFEKDKMRLKVPVA 61 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 KA +GMRKLSE FV+RALK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVRDL Sbjct: 62 KAKSVGMRKLSETDFVDRALKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVRDL 121 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 +R D+QPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE NL+ + K Sbjct: 122 YRADTQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVRLIEENLNKGPKRGPK 177 >gi|284989246|ref|YP_003407800.1| CarD family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062491|gb|ADB73429.1| transcriptional regulator, CarD family [Geodermatophilus obscurus DSM 43160] Length = 160 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 82/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 GF GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R Sbjct: 1 MGFTVGETVVYPHHGAALIEAIETRVIKGEERAYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + R +++R + T WSRR + K+ SGD+ +AEVVRDL R D Sbjct: 61 VVGQDGLNRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A L++ L+S Sbjct: 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEVLLDEVLAS 160 >gi|239981206|ref|ZP_04703730.1| putative CarD-like transcriptional regulator [Streptomyces albus J1074] gi|291453071|ref|ZP_06592461.1| transcriptional factor regulator [Streptomyces albus J1074] gi|291356020|gb|EFE82922.1| transcriptional factor regulator [Streptomyces albus J1074] Length = 160 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKNYLVLKVAQGDLTVRVPADNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + Sbjct: 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIRVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160 >gi|319409358|emb|CBI83002.1| transcriptional factor [Bartonella schoenbuchensis R1] Length = 194 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 119/190 (62%), Positives = 147/190 (77%), Gaps = 2/190 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q+K+ + +GF T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MASQRKKTSSVKGFSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ IGMRKLSE+ VERALK ++GKARVKR MWSRRAQEYD KINSG+L+ IAEVVR Sbjct: 61 VAKALSIGMRKLSESDLVERALKTLQGKARVKRAMWSRRAQEYDTKINSGNLVFIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS- 179 DL R++ Q E+SYSERQLY +AL+RM REIA +N++SE EAINLIE +L+ +S + K+ Sbjct: 121 DLFRSELQSEQSYSERQLYAAALDRMAREIAIINNLSETEAINLIETHLTKESKRKFKAG 180 Query: 180 -TSENQDKAA 188 E D +A Sbjct: 181 MDEEKDDSSA 190 >gi|323703787|ref|ZP_08115425.1| transcriptional regulator, CarD family [Desulfotomaculum nigrificans DSM 574] gi|323531256|gb|EGB21157.1| transcriptional regulator, CarD family [Desulfotomaculum nigrificans DSM 574] Length = 158 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 91/158 (57%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ + ++G+R++ Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEKRKYYILRLPIGDMKVMIPINNSEEVGLREI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V++ + +++GK V T W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 61 IAPDEVKQVMGVLQGKTSVMSTNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A ++ E+ + E +A ++I+ + Sbjct: 121 SGERKMLENARQILISELVLATELEEDKARSMIDGVFA 158 >gi|319407756|emb|CBI81403.1| transcriptional factor [Bartonella sp. 1-1C] Length = 191 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 112/187 (59%), Positives = 136/187 (72%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MAPPRNTSFSAEDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ GMRKLS V RA K+++GKAR+KRTMWSRRAQEYD KINSGD+I+IAEVVR Sbjct: 61 VAKALSTGMRKLSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGDIISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R+ QPE+SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS K+ Sbjct: 121 DLFRSALQPEQSYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKSKCEFKNE 180 Query: 181 SENQDKA 187 + + A Sbjct: 181 IDEGNNA 187 >gi|108801703|ref|YP_641900.1| CarD family transcriptional regulator [Mycobacterium sp. MCS] gi|119870854|ref|YP_940806.1| CarD family transcriptional regulator [Mycobacterium sp. KMS] gi|126437690|ref|YP_001073381.1| CarD family transcriptional regulator [Mycobacterium sp. JLS] gi|108772122|gb|ABG10844.1| transcriptional regulator, CarD family [Mycobacterium sp. MCS] gi|119696943|gb|ABL94016.1| transcriptional regulator, CarD family [Mycobacterium sp. KMS] gi|126237490|gb|ABO00891.1| transcriptional regulator, CarD family [Mycobacterium sp. JLS] Length = 162 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 87/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A ++ + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS 162 >gi|15610719|ref|NP_218100.1| transcription factor [Mycobacterium tuberculosis H37Rv] gi|15843196|ref|NP_338233.1| hypothetical protein MT3689 [Mycobacterium tuberculosis CDC1551] gi|31794760|ref|NP_857253.1| putative transcription factor [Mycobacterium bovis AF2122/97] gi|41406573|ref|NP_959409.1| hypothetical protein MAP0475 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464023|ref|YP_879850.1| CarD family transcriptional regulator [Mycobacterium avium 104] gi|118619338|ref|YP_907670.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|121639503|ref|YP_979727.1| putative transcription factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663447|ref|YP_001284970.1| putative transcription factor [Mycobacterium tuberculosis H37Ra] gi|148824789|ref|YP_001289543.1| transcription factor [Mycobacterium tuberculosis F11] gi|167967112|ref|ZP_02549389.1| hypothetical transcription factor [Mycobacterium tuberculosis H37Ra] gi|183985051|ref|YP_001853342.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|215405632|ref|ZP_03417813.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|215413503|ref|ZP_03422180.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|215429084|ref|ZP_03427003.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] gi|215432556|ref|ZP_03430475.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|215447917|ref|ZP_03434669.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|218755367|ref|ZP_03534163.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|219559660|ref|ZP_03538736.1| transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|253800624|ref|YP_003033625.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254366146|ref|ZP_04982190.1| hypothetical transcription factor [Mycobacterium tuberculosis str. Haarlem] gi|254552692|ref|ZP_05143139.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|254773528|ref|ZP_05215044.1| transcriptional regulatory protein [Mycobacterium avium subsp. avium ATCC 25291] gi|254822710|ref|ZP_05227711.1| transcriptional regulatory protein [Mycobacterium intracellulare ATCC 13950] gi|260184500|ref|ZP_05761974.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260198625|ref|ZP_05766116.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260202771|ref|ZP_05770262.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441013|ref|ZP_06430757.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289445177|ref|ZP_06434921.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555847|ref|ZP_06445057.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289571825|ref|ZP_06452052.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289572236|ref|ZP_06452463.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289747420|ref|ZP_06506798.1| transcription factor [Mycobacterium tuberculosis 02_1987] gi|289752298|ref|ZP_06511676.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289755712|ref|ZP_06515090.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289759741|ref|ZP_06519119.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289763762|ref|ZP_06523140.1| transcription factor [Mycobacterium tuberculosis GM 1503] gi|294993703|ref|ZP_06799394.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297636258|ref|ZP_06954038.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297733251|ref|ZP_06962369.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298527062|ref|ZP_07014471.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|306777937|ref|ZP_07416274.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306778466|ref|ZP_07416803.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306786490|ref|ZP_07424812.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306790855|ref|ZP_07429177.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306791178|ref|ZP_07429480.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306795963|ref|ZP_07434265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306801211|ref|ZP_07437879.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306805423|ref|ZP_07442091.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306969715|ref|ZP_07482376.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306974055|ref|ZP_07486716.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307081764|ref|ZP_07490934.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307086380|ref|ZP_07495493.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313660581|ref|ZP_07817461.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|3261556|emb|CAA17859.1| POSSIBLE TRANSCRIPTION FACTOR [Mycobacterium tuberculosis H37Rv] gi|13883549|gb|AAK48047.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31620357|emb|CAD95800.1| PUTATIVE TRANSCRIPTION FACTOR [Mycobacterium bovis AF2122/97] gi|41394922|gb|AAS02792.1| hypothetical protein MAP_0475 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165310|gb|ABK66207.1| transcriptional regulator, CarD family protein [Mycobacterium avium 104] gi|118571448|gb|ABL06199.1| conserved transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|121495151|emb|CAL73637.1| Putative transcription factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151658|gb|EBA43703.1| hypothetical transcription factor [Mycobacterium tuberculosis str. Haarlem] gi|148507599|gb|ABQ75408.1| putative transcription factor [Mycobacterium tuberculosis H37Ra] gi|148723316|gb|ABR07941.1| hypothetical transcription factor [Mycobacterium tuberculosis F11] gi|183178377|gb|ACC43487.1| conserved transcriptional regulatory protein [Mycobacterium marinum M] gi|253322127|gb|ACT26730.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289413932|gb|EFD11172.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289418135|gb|EFD15336.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289440479|gb|EFD22972.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289536667|gb|EFD41245.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289545579|gb|EFD49227.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289687948|gb|EFD55436.1| transcription factor [Mycobacterium tuberculosis 02_1987] gi|289692885|gb|EFD60314.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289696299|gb|EFD63728.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289711268|gb|EFD75284.1| transcription factor [Mycobacterium tuberculosis GM 1503] gi|289715305|gb|EFD79317.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298496856|gb|EFI32150.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|308213809|gb|EFO73208.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308328563|gb|EFP17414.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308328978|gb|EFP17829.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308332800|gb|EFP21651.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308340291|gb|EFP29142.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343630|gb|EFP32481.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308348097|gb|EFP36948.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308352020|gb|EFP40871.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308352807|gb|EFP41658.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308356657|gb|EFP45508.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308360612|gb|EFP49463.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308364200|gb|EFP53051.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323717777|gb|EGB26975.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326905422|gb|EGE52355.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328460355|gb|AEB05778.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 162 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A S + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|27375267|ref|NP_766796.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348403|dbj|BAC45421.1| bll0156 [Bradyrhizobium japonicum USDA 110] Length = 328 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 108/185 (58%), Positives = 140/185 (75%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 ++K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 125 EKKVVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 184 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 ++GMRKLSE V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+ Sbjct: 185 VANVGMRKLSEPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 244 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 R++SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ + Sbjct: 245 RSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIEAQLAKSPRRNAKAEATE 304 Query: 184 QDKAA 188 + A Sbjct: 305 GEADA 309 >gi|319404796|emb|CBI78397.1| transcriptional factor [Bartonella rochalimae ATCC BAA-1498] Length = 191 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 136/187 (72%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MAPPRNTSFSAEDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA+ GMRKLS V RA K+++GKAR+KRTMWSRRAQEYD KINSG++I+IAEVVR Sbjct: 61 VAKALSTGMRKLSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGNIISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R+ QPE+SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS K+ Sbjct: 121 DLFRSALQPEQSYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKSKCDFKNE 180 Query: 181 SENQDKA 187 + + A Sbjct: 181 IDEGNNA 187 >gi|332800107|ref|YP_004461606.1| CarD family transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697842|gb|AEE92299.1| transcriptional regulator, CarD family [Tepidanaerobacter sp. Re1] Length = 158 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 86/155 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+E+ G K +++++ M + +P+ DIG+R++ Sbjct: 1 MFNIGDKVVYPMHGAGVIEAIEEKEILGEKQKYYIMRMPIGDMKVMIPLNNIEDIGVRQV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++RG+ + W+RR + KI SG++ +AEVVR+L D + S Sbjct: 61 VGDEEISEVFNILRGEKSKMSSNWNRRYRANMDKIRSGNIFQVAEVVRNLSLRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 ER++ E+A + +V EI +I E EA+ +IE Sbjct: 121 TGERKMLENAKHILVSEIVLSKNIQEDEALQMIEN 155 >gi|134097051|ref|YP_001102712.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL 2338] gi|291007008|ref|ZP_06564981.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL 2338] gi|133909674|emb|CAL99786.1| CarD family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 162 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 82/161 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDRVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A E +A L++ L++ Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLATA 161 >gi|188583533|ref|YP_001926978.1| CarD family transcriptional regulator [Methylobacterium populi BJ001] gi|179347031|gb|ACB82443.1| transcriptional regulator, CarD family [Methylobacterium populi BJ001] Length = 198 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 114/179 (63%), Positives = 149/179 (83%), Gaps = 2/179 (1%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V Sbjct: 1 MTTAKKTTAAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 RDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ KS + K Sbjct: 121 RDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNRITETEALKLIEQSLA-KSPRRAK 178 >gi|256374519|ref|YP_003098179.1| CarD family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918822|gb|ACU34333.1| transcriptional regulator, CarD family [Actinosynnema mirum DSM 43827] Length = 162 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 84/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A E +A L++ L++ S Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLATAS 162 >gi|15827084|ref|NP_301347.1| transcription factor [Mycobacterium leprae TN] gi|221229562|ref|YP_002502978.1| putative transcription factor [Mycobacterium leprae Br4923] gi|13092632|emb|CAC29828.1| putative transcription factor [Mycobacterium leprae] gi|219932669|emb|CAR70413.1| putative transcription factor [Mycobacterium leprae Br4923] Length = 165 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 85/162 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 4 MIFKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 63 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ ++EVVRDL R D Sbjct: 64 VVGQEGLDQVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVSEVVRDLWRRDQDRGL 123 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A S + +A +++ L++ S Sbjct: 124 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 165 >gi|312138097|ref|YP_004005433.1| card like transcriptional regulator [Rhodococcus equi 103S] gi|325674999|ref|ZP_08154686.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311887436|emb|CBH46748.1| CarD like transcriptional regulator [Rhodococcus equi 103S] gi|325554585|gb|EGD24260.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 162 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 84/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAEGTDDAKAEIILDEVLAAAS 162 >gi|17986562|ref|NP_539196.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|17982170|gb|AAL51460.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] Length = 207 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 131/188 (69%), Positives = 153/188 (81%), Gaps = 2/188 (1%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K K+ Sbjct: 137 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGPKRGKA 195 Query: 180 TSENQDKA 187 +E D Sbjct: 196 EAELDDDE 203 >gi|218532096|ref|YP_002422912.1| CarD family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140688|ref|YP_002965168.1| transcriptional regulator, CarD family [Methylobacterium extorquens AM1] gi|218524399|gb|ACK84984.1| transcriptional regulator, CarD family [Methylobacterium chloromethanicum CM4] gi|240010665|gb|ACS41891.1| transcriptional regulator, CarD family [Methylobacterium extorquens AM1] Length = 196 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 111/176 (63%), Positives = 145/176 (82%), Gaps = 1/176 (0%) Query: 1 MTFQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V Sbjct: 1 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + Sbjct: 121 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRR 176 >gi|163853280|ref|YP_001641323.1| transcription factor CarD [Methylobacterium extorquens PA1] gi|163664885|gb|ABY32252.1| transcription factor CarD [Methylobacterium extorquens PA1] Length = 196 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 112/176 (63%), Positives = 145/176 (82%), Gaps = 1/176 (0%) Query: 1 MTFQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V Sbjct: 1 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 P KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLI++ EVV Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLISVTEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + Sbjct: 121 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRR 176 >gi|296131792|ref|YP_003639039.1| transcriptional regulator, CarD family [Thermincola sp. JR] gi|296030370|gb|ADG81138.1| transcriptional regulator, CarD family [Thermincola potens JR] Length = 158 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 84/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+EV G ++V+ M + +P D+G+R++ Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEVLGEVRSYYVMRLPIGDMKVMIPTSNVKDLGLRQV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V+R L ++ K V W++R + KI SG++ +AEVVR+L R D + S Sbjct: 61 IDEEGVQRVLNILSEKDTVMSANWNKRYRTNMEKIKSGNIFEVAEVVRNLMRRDQEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A ++ E+ + E + ++++ + Sbjct: 121 TGERKMLENARQILISELVLARGVKEEKVQSMLDEVFA 158 >gi|331699819|ref|YP_004336058.1| CarD family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954508|gb|AEA28205.1| transcriptional regulator, CarD family [Pseudonocardia dioxanivorans CB1190] Length = 164 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 83/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRTIKGEERKYLVLKVAQGDLTVRVPAENAEVVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A E A L++ L++ + Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDEERAEVLLDEVLATAA 162 >gi|319406281|emb|CBI79918.1| transcriptional factor [Bartonella sp. AR 15-3] Length = 191 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 137/187 (73%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP Sbjct: 1 MAPPRNTSSSAKDFSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ GMRKLS + RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEVVR Sbjct: 61 IAKALSTGMRKLSTVDSMNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL R+D QPE+SYSERQLY AL+RM REIA +NS++E EAINLIE L+ KS K+ Sbjct: 121 DLFRSDLQPEQSYSERQLYTIALDRMAREIAVINSLTEMEAINLIEKYLTKKSKCEFKNE 180 Query: 181 SENQDKA 187 + A Sbjct: 181 IDEGSNA 187 >gi|23502623|ref|NP_698750.1| transcriptional regulator [Brucella suis 1330] gi|82700550|ref|YP_415124.1| transcription factor CarD [Brucella melitensis biovar Abortus 2308] gi|148558867|ref|YP_001259610.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|161619691|ref|YP_001593578.1| hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365] gi|163845343|ref|YP_001622998.1| hypothetical protein BSUIS_B1242 [Brucella suis ATCC 23445] gi|189024848|ref|YP_001935616.1| CarD family transcriptional regulator [Brucella abortus S19] gi|225853216|ref|YP_002733449.1| hypothetical protein BMEA_A1818 [Brucella melitensis ATCC 23457] gi|254694417|ref|ZP_05156245.1| hypothetical protein Babob3T_07112 [Brucella abortus bv. 3 str. Tulya] gi|254698076|ref|ZP_05159904.1| hypothetical protein Babob28_10303 [Brucella abortus bv. 2 str. 86/8/59] gi|254700418|ref|ZP_05162246.1| hypothetical protein Bsuib55_06119 [Brucella suis bv. 5 str. 513] gi|254703537|ref|ZP_05165365.1| hypothetical protein Bsuib36_06359 [Brucella suis bv. 3 str. 686] gi|254708586|ref|ZP_05170414.1| hypothetical protein BpinM_16983 [Brucella pinnipedialis M163/99/10] gi|254708772|ref|ZP_05170583.1| hypothetical protein BpinB_00646 [Brucella pinnipedialis B2/94] gi|254714615|ref|ZP_05176426.1| hypothetical protein BcetM6_15022 [Brucella ceti M644/93/1] gi|254717513|ref|ZP_05179324.1| hypothetical protein BcetM_14151 [Brucella ceti M13/05/1] gi|254719759|ref|ZP_05181570.1| hypothetical protein Bru83_09478 [Brucella sp. 83/13] gi|256030298|ref|ZP_05443912.1| hypothetical protein BpinM2_06566 [Brucella pinnipedialis M292/94/1] gi|256045367|ref|ZP_05448261.1| hypothetical protein Bmelb1R_12807 [Brucella melitensis bv. 1 str. Rev.1] gi|256061797|ref|ZP_05451932.1| hypothetical protein Bneo5_15748 [Brucella neotomae 5K33] gi|256255678|ref|ZP_05461214.1| hypothetical protein BcetB_15638 [Brucella ceti B1/94] gi|256258180|ref|ZP_05463716.1| hypothetical protein Babob9C_12716 [Brucella abortus bv. 9 str. C68] gi|256263295|ref|ZP_05465827.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9] gi|256370172|ref|YP_003107683.1| transcriptional regulator, CarD family [Brucella microti CCM 4915] gi|260167972|ref|ZP_05754783.1| transcriptional regulator, CarD family protein [Brucella sp. F5/99] gi|260547126|ref|ZP_05822864.1| transcription factor CarD [Brucella abortus NCTC 8038] gi|260565739|ref|ZP_05836222.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M] gi|260568843|ref|ZP_05839311.1| transcription factor CarD [Brucella suis bv. 4 str. 40] gi|260755460|ref|ZP_05867808.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758682|ref|ZP_05871030.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762517|ref|ZP_05874854.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884478|ref|ZP_05896092.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261214731|ref|ZP_05929012.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219348|ref|ZP_05933629.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261222884|ref|ZP_05937165.1| transcriptional regulator [Brucella ceti B1/94] gi|261316093|ref|ZP_05955290.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316265|ref|ZP_05955462.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322409|ref|ZP_05961606.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261325799|ref|ZP_05964996.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750916|ref|ZP_05994625.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754170|ref|ZP_05997879.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757414|ref|ZP_06001123.1| transcription factor CarD [Brucella sp. F5/99] gi|265984778|ref|ZP_06097513.1| transcriptional regulator [Brucella sp. 83/13] gi|265987329|ref|ZP_06099886.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265991795|ref|ZP_06104352.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995635|ref|ZP_06108192.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265998843|ref|ZP_06111400.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306839455|ref|ZP_07472263.1| transcriptional regulator [Brucella sp. NF 2653] gi|306844751|ref|ZP_07477336.1| transcriptional regulator [Brucella sp. BO1] gi|23348628|gb|AAN30665.1| transcriptional regulator, putative [Brucella suis 1330] gi|82616651|emb|CAJ11733.1| Transcription factor CarD [Brucella melitensis biovar Abortus 2308] gi|148370124|gb|ABQ60103.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|161336502|gb|ABX62807.1| Hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365] gi|163676066|gb|ABY40176.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020420|gb|ACD73142.1| Transcription factor CarD [Brucella abortus S19] gi|225641581|gb|ACO01495.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000335|gb|ACU48734.1| transcriptional regulator, CarD family [Brucella microti CCM 4915] gi|260095491|gb|EEW79369.1| transcription factor CarD [Brucella abortus NCTC 8038] gi|260151112|gb|EEW86207.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M] gi|260154227|gb|EEW89309.1| transcription factor CarD [Brucella suis bv. 4 str. 40] gi|260669000|gb|EEX55940.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672943|gb|EEX59764.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675568|gb|EEX62389.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874006|gb|EEX81075.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916338|gb|EEX83199.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921468|gb|EEX88121.1| transcriptional regulator [Brucella ceti B1/94] gi|260924437|gb|EEX91005.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261295099|gb|EEX98595.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295488|gb|EEX98984.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261301779|gb|EEY05276.1| transcriptional regulator [Brucella neotomae 5K33] gi|261305119|gb|EEY08616.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737398|gb|EEY25394.1| transcription factor CarD [Brucella sp. F5/99] gi|261740669|gb|EEY28595.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261743923|gb|EEY31849.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262553532|gb|EEZ09301.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262766919|gb|EEZ12537.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263002751|gb|EEZ15154.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263093262|gb|EEZ17359.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9] gi|264659526|gb|EEZ29787.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663370|gb|EEZ33631.1| transcriptional regulator [Brucella sp. 83/13] gi|306274923|gb|EFM56693.1| transcriptional regulator [Brucella sp. BO1] gi|306405400|gb|EFM61671.1| transcriptional regulator [Brucella sp. NF 2653] gi|326409773|gb|ADZ66838.1| Transcription factor CarD [Brucella melitensis M28] gi|326539490|gb|ADZ87705.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 191 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 131/188 (69%), Positives = 153/188 (81%), Gaps = 2/188 (1%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K K+ Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGPKRGKA 179 Query: 180 TSENQDKA 187 +E D Sbjct: 180 EAELDDDE 187 >gi|312194274|ref|YP_004014335.1| CarD family transcriptional regulator [Frankia sp. EuI1c] gi|311225610|gb|ADP78465.1| transcriptional regulator, CarD family [Frankia sp. EuI1c] Length = 160 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 82/159 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R Sbjct: 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNIGMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A +E +A +++ L+ Sbjct: 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159 >gi|86742930|ref|YP_483330.1| CarD family transcriptional regulator [Frankia sp. CcI3] gi|158312226|ref|YP_001504734.1| CarD family transcriptional regulator [Frankia sp. EAN1pec] gi|288923580|ref|ZP_06417692.1| transcriptional regulator, CarD family [Frankia sp. EUN1f] gi|289642338|ref|ZP_06474486.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca glomerata] gi|86569792|gb|ABD13601.1| transcriptional regulator, CarD family [Frankia sp. CcI3] gi|158107631|gb|ABW09828.1| transcriptional regulator, CarD family [Frankia sp. EAN1pec] gi|288345079|gb|EFC79496.1| transcriptional regulator, CarD family [Frankia sp. EUN1f] gi|289507870|gb|EFD28821.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca glomerata] Length = 160 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 82/159 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R Sbjct: 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNVGMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A +E +A +++ L+ Sbjct: 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159 >gi|111225860|ref|YP_716654.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a] gi|111153392|emb|CAJ65148.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a] Length = 160 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 82/159 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R Sbjct: 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEERLYLVLKVAQGDLTVRVPADNVGMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A +E +A +++ L+ Sbjct: 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159 >gi|302530715|ref|ZP_07283057.1| transcription regulator CarD [Streptomyces sp. AA4] gi|302439610|gb|EFL11426.1| transcription regulator CarD [Streptomyces sp. AA4] Length = 163 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 81/161 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A E +A L++ L + Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLETA 161 >gi|300790484|ref|YP_003770775.1| CarD family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799998|gb|ADJ50373.1| CarD family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 163 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 81/161 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A E +A L++ L + Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLETA 161 >gi|225181295|ref|ZP_03734740.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus AHT 1] gi|225168075|gb|EEG76881.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus AHT 1] Length = 164 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 82/155 (52%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+E+ G + ++++ M + +P+ IG+R++ Sbjct: 1 MFNIGDKVVYPMHGAGVIEAIEEKEILGARKRYYIMNIPIGDMKVMIPMDNVDQIGLREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + H VE+ L ++R T W+RR + KI SGD+ +AEVVR+L + + S Sbjct: 61 IDTHGVEQVLTILRDNHSKMSTNWNRRYRANMEKIKSGDIFQVAEVVRNLMLREREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 ER++ +SA +V E+ + S + ++ Sbjct: 121 TGERKMLDSAKQILVSELVLAQNTSAQDVDEILNQ 155 >gi|152964866|ref|YP_001360650.1| CarD family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151359383|gb|ABS02386.1| transcriptional regulator, CarD family [Kineococcus radiotolerans SRS30216] Length = 160 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 83/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + V+ + + ++VP +G+R Sbjct: 1 MAFTVGETVVYPHHGAALIEEIKTRTIKGEDKLYLVLKVAQGDLTIEVPADNVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R ++R + T WSRR + K+ SGD++ +AEVVRDL R D Sbjct: 61 VVGREGLDRVFSVLRTPYAEEPTNWSRRYKANLEKLASGDVVKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A +L++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAENTNEDKAESLLDEVLAS 160 >gi|254473139|ref|ZP_05086537.1| transcription factor CarD [Pseudovibrio sp. JE062] gi|211957860|gb|EEA93062.1| transcription factor CarD [Pseudovibrio sp. JE062] Length = 193 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 114/193 (59%), Positives = 145/193 (75%), Gaps = 5/193 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M K+ A RQGF+TGEHI+YP+HGVG IT I+EQ VAG LE VI F++DKM L+VP Sbjct: 1 MATPAKKTAQRQGFKTGEHIIYPSHGVGLITAIEEQTVAGYSLELLVIEFEQDKMTLRVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V K +GMRKLS+A V+++L+ + GK RVKRTMWSRRAQEY+AKINSGDL++ AEVVR Sbjct: 61 VAKIASVGMRKLSDASTVKKSLETIAGKPRVKRTMWSRRAQEYEAKINSGDLVSTAEVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 DL+R+D+QPE+SYSERQLYE+AL+RM REIAAV ++ EAI IE LS+ + K+ Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMAREIAAVQKQTDTEAIRQIEGVLSTAPGRAAKAA 180 Query: 181 SE-----NQDKAA 188 Q++AA Sbjct: 181 PAAGEDGGQEEAA 193 >gi|62290636|ref|YP_222429.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|254689925|ref|ZP_05153179.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254730960|ref|ZP_05189538.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256114331|ref|ZP_05455069.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256160471|ref|ZP_05458160.1| transcriptional regulator [Brucella ceti M490/95/1] gi|297249030|ref|ZP_06932738.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|62196768|gb|AAX75068.1| hypothetical transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|297174163|gb|EFH33520.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 194 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 131/188 (69%), Positives = 153/188 (81%), Gaps = 2/188 (1%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 123 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K K+ Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGPKRGKA 182 Query: 180 TSENQDKA 187 +E D Sbjct: 183 EAELDDDE 190 >gi|257057465|ref|YP_003135297.1| transcriptional regulator, CarD family [Saccharomonospora viridis DSM 43017] gi|256587337|gb|ACU98470.1| transcriptional regulator, CarD family [Saccharomonospora viridis DSM 43017] Length = 163 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 80/161 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + R ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLNRVFDVLRAPHTDEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A E +A L++ L + Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTDESKAEVLLDEVLETA 161 >gi|296447999|ref|ZP_06889905.1| transcriptional regulator, CarD family [Methylosinus trichosporium OB3b] gi|296254509|gb|EFH01630.1| transcriptional regulator, CarD family [Methylosinus trichosporium OB3b] Length = 546 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 107/174 (61%), Positives = 133/174 (76%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF+T E IVYPAHGVG I I+ QEVAG LE FV+ F KDKM LKVPV K +GMRKL Sbjct: 359 GFKTNEFIVYPAHGVGQIMAIETQEVAGFSLELFVVHFVKDKMTLKVPVSKVAAVGMRKL 418 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E VE+AL + G+ARVKRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QPE+S Sbjct: 419 AEPDVVEKALGTLTGRARVKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQPEQS 478 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 YSERQLYE+AL+RM RE+AAV + + E++ LIE L+ + +KS + + Sbjct: 479 YSERQLYEAALDRMAREVAAVRKLIDSESLKLIESFLAKSPRRGQKSEDASDEA 532 >gi|258513613|ref|YP_003189835.1| transcriptional regulator, CarD family [Desulfotomaculum acetoxidans DSM 771] gi|257777318|gb|ACV61212.1| transcriptional regulator, CarD family [Desulfotomaculum acetoxidans DSM 771] Length = 158 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 86/158 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G ++++ M + +P+ D+G+R++ Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEIKHYYILRLPIGNMKVMIPIDHGRDVGLRQV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V+ L+++ K+ W+RR + KI SG++ +AEVVR+L + D + S Sbjct: 61 ITRDDVQMVLRILSDKSTSMPPNWNRRYRANLEKIKSGNIYEVAEVVRNLIKRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A ++ E+ + E +A +L++ + Sbjct: 121 SGERKMLENARQILISELVLATELEEDKAQSLVDGVFA 158 >gi|224992000|ref|YP_002646689.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo 172] gi|224775115|dbj|BAH27921.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo 172] Length = 162 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPRHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A S + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162 >gi|316931531|ref|YP_004106513.1| CarD family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599245|gb|ADU41780.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris DX-1] Length = 264 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 105/172 (61%), Positives = 135/172 (78%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 64 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 123 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 124 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 183 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ + Sbjct: 184 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRRG 235 >gi|169830398|ref|YP_001716380.1| CarD family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637242|gb|ACA58748.1| transcriptional regulator, CarD family [Candidatus Desulforudis audaxviator MP104C] Length = 158 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 86/158 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+E+ G + +++V+ M + VP +IG+R++ Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEILGERQQYYVLRLPVGNMKVMVPTANGPNIGLRQV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V++ +++ + W+RR + KI SG++ +AEVVR+L R + + S Sbjct: 61 IGQEEVQKVFGILKDVSTQMPGNWNRRYRANLEKIKSGNIYEVAEVVRNLARREREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++ ESA ++ E+ + E +A +++E + Sbjct: 121 SGEKRMLESARQILISELVLATEVEEDKARSMLEEMFA 158 >gi|121602125|ref|YP_988461.1| CarD family transcriptional regulator [Bartonella bacilliformis KC583] gi|120614302|gb|ABM44903.1| transcriptional regulator, CarD family [Bartonella bacilliformis KC583] Length = 192 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 117/190 (61%), Positives = 144/190 (75%), Gaps = 4/190 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M QQK+ + GF T E+IVYP HGVG I I+EQEVAG KLE FVI F KDKM +KVP Sbjct: 1 MASQQKKTS--HGFSTSEYIVYPTHGVGQIMVIEEQEVAGHKLELFVIHFAKDKMDVKVP 58 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 + KA+ GMRKLSE VE+ALK+++GKAR+KR MWSRRAQEYD KINSG+ + IAEVVR Sbjct: 59 IAKALSTGMRKLSEPASVEKALKILQGKARIKRIMWSRRAQEYDTKINSGNFMFIAEVVR 118 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS--SKSSKTEK 178 DL R+D QPE+SYSERQLY +AL+RM REI+ +N++SE EA+NLIE +L+ KSS K Sbjct: 119 DLFRSDLQPEQSYSERQLYAAALDRMSREISVINNLSETEAVNLIEKHLNEGQKSSFEAK 178 Query: 179 STSENQDKAA 188 ++D A Sbjct: 179 IDEADEDSKA 188 >gi|259417460|ref|ZP_05741379.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B] gi|259346366|gb|EEW58180.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B] Length = 193 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 102/166 (61%), Positives = 128/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KA+DIG Sbjct: 28 SKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAVDIG 87 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 88 MRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 147 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 148 REQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 193 >gi|84515406|ref|ZP_01002768.1| putative CarD-like transcriptional regulator [Loktanella vestfoldensis SKA53] gi|84510689|gb|EAQ07144.1| putative CarD-like transcriptional regulator [Loktanella vestfoldensis SKA53] Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 98/168 (58%), Positives = 118/168 (70%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F + +VYPAHGVG I ++ QEVAG +LE FVIAF+KDKM L+VP KA D Sbjct: 58 MTKKKSEFSPDQFVVYPAHGVGKIVSVETQEVAGFELEMFVIAFEKDKMTLRVPTHKATD 117 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMR L+ V ALK +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Sbjct: 118 VGMRALATPDVVNHALKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQD 177 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E+SYSERQLYE+AL R+ RE AAV E A I L +++ Sbjct: 178 DQREQSYSERQLYEAALERLTREFAAVAGDDENAAAAQIGSVLVGRAA 225 >gi|147676622|ref|YP_001210837.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146272719|dbj|BAF58468.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 158 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 87/154 (56%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ ++G+R + Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEKRQYYILRLPVGDMKVMIPITSGEEVGLRGV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V+R ++R ++ W+RR + KI SG++ +AEVVR+L + D + S Sbjct: 61 IDREGVQRVFHILRQQSSAMSPNWNRRYRANLEKIKSGNIYEVAEVVRNLVKRDREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 ER++ ESA ++ E+ + E +A +L++ Sbjct: 121 SGERKMLESARQILLSELVLATELEEEKAQSLLD 154 >gi|192288919|ref|YP_001989524.1| CarD family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282668|gb|ACE99048.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris TIE-1] Length = 278 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 105/172 (61%), Positives = 135/172 (78%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 80 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 139 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 140 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 199 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ + Sbjct: 200 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRRG 251 >gi|39933565|ref|NP_945841.1| CarD-like transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647411|emb|CAE25932.1| possible CarD-like transcriptional regulator [Rhodopseudomonas palustris CGA009] Length = 220 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 105/172 (61%), Positives = 135/172 (78%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K Sbjct: 22 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 81 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R Sbjct: 82 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 141 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ + Sbjct: 142 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRRG 193 >gi|319948870|ref|ZP_08022983.1| CarD family transcriptional regulator [Dietzia cinnamea P4] gi|319437472|gb|EFV92479.1| CarD family transcriptional regulator [Dietzia cinnamea P4] Length = 164 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 85/163 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG TI I+ + V G + E+ V+ + + +KVP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAATIQAIEMRTVRGTEKEYLVLKVSQGDLTVKVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ +++R + + T WSRR + K+ SGD+ +AEVVRDL R D Sbjct: 61 VVDQAGLDKVFEVLRTEHAEEPTNWSRRYKANGEKLASGDVNKVAEVVRDLWRRDLDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S E+++ A +V E+A E A L++ L S + Sbjct: 121 SAGEKRMLAKARQVLVGELALAERSDEERADALLDEVLGSAAP 163 >gi|296138335|ref|YP_003645578.1| transcriptional regulator, CarD family [Tsukamurella paurometabola DSM 20162] gi|296026469|gb|ADG77239.1| transcriptional regulator, CarD family [Tsukamurella paurometabola DSM 20162] Length = 162 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + +KVP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIEIKTIGGREREYLVLKVAQGDLTVKVPAENAEVVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + + +A +L++ L++ S Sbjct: 121 SAGEKRMLTKARQILVGELALAEATDDGKAESLLDEALAAAS 162 >gi|239832849|ref|ZP_04681178.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825116|gb|EEQ96684.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 209 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 125/178 (70%), Positives = 146/178 (82%), Gaps = 1/178 (0%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ + + Sbjct: 137 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLAKGPKRGK 194 >gi|317123120|ref|YP_004103123.1| CarD family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593100|gb|ADU52396.1| transcriptional regulator, CarD family [Thermaerobacter marianensis DSM 12885] Length = 190 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 80/175 (45%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+EV G + ++V+ M + +P A G+R + Sbjct: 1 MFEVGDRVVYPMHGAGVIEAIEEREVLGKRHRYYVLRLPVGDMRVMIPTTTASRCGLRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A V L + A W+ R +E+ K+ +GD++ +A VVR+L + S Sbjct: 61 IPAEQVPAVLDALGDPAPPMDPNWNHRYREHADKLRTGDVLEVAAVVRNLSARQRERGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 ER+L + A +V E+ + + + L++ L + E + + Sbjct: 121 GGERRLLDQARQILVSELTLASGLDQAAVDALVDRCLEGGAGDGPGPFPERGEAS 175 >gi|153008468|ref|YP_001369683.1| CarD family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560356|gb|ABS13854.1| transcriptional regulator, CarD family [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 125/178 (70%), Positives = 146/178 (82%), Gaps = 1/178 (0%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ + + Sbjct: 121 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLAKGPKRGK 178 >gi|317126037|ref|YP_004100149.1| CarD family transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590125|gb|ADU49422.1| transcriptional regulator, CarD family [Intrasporangium calvum DSM 43043] Length = 160 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I EI + + G + + + + ++VP +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEEINTRTIKGEDKLYLKLKVAQGDLTIEVPAENCDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D Sbjct: 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A ++++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTDEDKAESILDEVLAS 160 >gi|84687443|ref|ZP_01015321.1| transcriptional regulator, CarD family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664601|gb|EAQ11087.1| transcriptional regulator, CarD family protein [Rhodobacterales bacterium HTCC2654] Length = 169 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 100/166 (60%), Positives = 127/166 (76%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A + FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA ++G Sbjct: 4 AKKLDFRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVPTNKATEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHR D Q Sbjct: 64 MRSLSSPDVVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRNDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGGDEAAAQEKVDGVLTSRAA 169 >gi|89055799|ref|YP_511250.1| CarD family transcriptional regulator [Jannaschia sp. CCS1] gi|88865348|gb|ABD56225.1| transcriptional regulator, CarD family [Jannaschia sp. CCS1] Length = 172 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 98/168 (58%), Positives = 121/168 (72%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + F +++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA Sbjct: 1 MTKARKTLDFSPNDYVVYPAHGVGQIITIEEQEVAGLNLELFVISFEKDKMTLRVPTAKA 60 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMR LS+ V +AL ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHR Sbjct: 61 TEVGMRPLSDPTVVSKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHR 120 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 D Q E+SYSERQLYE+AL R+ RE+A V I E A + LS + Sbjct: 121 ADDQREQSYSERQLYEAALERLTRELAVVKGIDEAGAGAQLVDVLSKR 168 >gi|260434064|ref|ZP_05788035.1| transcriptional regulator, CarD family [Silicibacter lacuscaerulensis ITI-1157] gi|260417892|gb|EEX11151.1| transcriptional regulator, CarD family [Silicibacter lacuscaerulensis ITI-1157] Length = 169 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 129/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR + +VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP KA + G Sbjct: 4 SKKLEFRPNDFVVYPAHGVGKIISIEEQEVAGFKLELFVISFEKDKMTLRVPTNKATESG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R LS +++A+K +RGKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 LRSLSTPDVIDQAMKTLRGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL+R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALDRLTREVAAVSGADEIAAAKQVDEVLTSRAA 169 >gi|313902845|ref|ZP_07836242.1| transcriptional regulator, CarD family [Thermaerobacter subterraneus DSM 13965] gi|313466965|gb|EFR62482.1| transcriptional regulator, CarD family [Thermaerobacter subterraneus DSM 13965] Length = 166 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 80/162 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G + ++++ M L +P A G+R + Sbjct: 1 MFQVGDRVVYPMHGAGVIEAIEEREVLGERHRYYILRLPVGDMRLMIPTASAPQSGLRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A V L+ + + W+ R +E+ K+ SGD++ +A VVR+L S Sbjct: 61 IPADQVPAVLEALCEPVPPLDSNWNHRYREHADKLRSGDILEVAVVVRNLSARQKARGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+L + A +V E+A + EA L+E +L + Sbjct: 121 GGERRLLDQARQILVSELALAGGMGRDEADALVERHLGAAEP 162 >gi|159043338|ref|YP_001532132.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911098|gb|ABV92531.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 170 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 101/170 (59%), Positives = 125/170 (73%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA Sbjct: 1 MSKANKSNEFRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVPTNKA 60 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++GMR LS V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR Sbjct: 61 TEVGMRSLSSPDIVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHR 120 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 D Q E+SYSERQLYE+AL R+ REIAAV+ E A ++ L S+++ Sbjct: 121 NDDQREQSYSERQLYEAALERLTREIAAVSGDDEGNAQKRVDDVLVSRAA 170 >gi|294851010|ref|ZP_06791686.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294821653|gb|EFG38649.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 194 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 130/188 (69%), Positives = 152/188 (80%), Gaps = 2/188 (1%) Query: 1 MTFQQKRDA-MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M+ QQK+ R GF+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV KA IGMRKLSE +VERALK+V+G+ARVKRTMW RRAQEYDAKINSGDLI+I+EVV Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWLRRAQEYDAKINSGDLISISEVV 123 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K K+ Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGPKRGKA 182 Query: 180 TSENQDKA 187 +E D Sbjct: 183 EAELDDDE 190 >gi|323138996|ref|ZP_08074056.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC 49242] gi|322395750|gb|EFX98291.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC 49242] Length = 485 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 103/169 (60%), Positives = 131/169 (77%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + GF+ E IVYPAHGVG I ++ QEVAG LE FV++F KDKM LKVP K ++GM Sbjct: 299 QKHGFKQSEFIVYPAHGVGQIIGVEIQEVAGFSLELFVVSFIKDKMILKVPTSKVANVGM 358 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 RKL+E + V++AL + G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QP Sbjct: 359 RKLAEGNVVDKALATLSGRARIKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQP 418 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 E+SYSERQLYE+AL+RM REIAAV + + EA+ LIE L + +K Sbjct: 419 EQSYSERQLYEAALDRMAREIAAVRKLIDSEALKLIESFLQKGPRRGQK 467 >gi|169627671|ref|YP_001701320.1| putative CarD-like transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239638|emb|CAM60666.1| Putative CarD-like transcriptional regulator [Mycobacterium abscessus] Length = 162 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 85/162 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + + Sbjct: 61 VVGREGLDTVFQVLRAPHTEEPTNWSRRFKANQEKLASGDVKKVAEVVRDLWRREQERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E+A + + +A +++ L++ S Sbjct: 121 SAGEKRMLAKARQILVGELALAENTNAAKADTILDEVLAAAS 162 >gi|217977551|ref|YP_002361698.1| transcriptional regulator, CarD family [Methylocella silvestris BL2] gi|217502927|gb|ACK50336.1| transcriptional regulator, CarD family [Methylocella silvestris BL2] Length = 456 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 109/180 (60%), Positives = 133/180 (73%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + + GF+ E+IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP K Sbjct: 268 SGSRQSGFKPNEYIVYPAHGVGQIVAIEEQEVAGFKLELFVISFVKDKMILKVPTPKVTS 327 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKL+EA V R+L + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+D Sbjct: 328 VGMRKLAEADVVRRSLDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSD 387 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 SQPE+SYSERQLYE+AL+RM RE+ V ++E EA+ IE L + K+ D Sbjct: 388 SQPEQSYSERQLYEAALDRMAREVVIVEKLTETEALKAIEAQLQKGPRRGGKAEEIEVDD 447 >gi|56696304|ref|YP_166661.1| CarD family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678041|gb|AAV94707.1| transcriptional regulator, CarD family [Ruegeria pomeroyi DSS-3] Length = 169 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 98/166 (59%), Positives = 128/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP KA + G Sbjct: 4 SKKLEFRPNDYVVYPAHGVGQILSIEEQEVAGFKLELFVISFEKDKMTLRVPTNKATESG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 LRSLSSPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGADEMAAAKQVDEVLTSRAA 169 >gi|197104173|ref|YP_002129550.1| transcriptional regulator,CarD family [Phenylobacterium zucineum HLK1] gi|196477593|gb|ACG77121.1| transcriptional regulator,CarD family [Phenylobacterium zucineum HLK1] Length = 171 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 97/168 (57%), Positives = 125/168 (74%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F G+H+VYPAHGVG + I+ QEVAG+KLE +VI FD +KM L+VP KA Sbjct: 1 MSKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKT 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R L++ V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR + Sbjct: 61 AGLRPLADTGLVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +QPE+SYSERQLYESAL+RM RE+AA+ I AI ++ +L ++ Sbjct: 121 NQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLNKSLVKATA 168 >gi|258651110|ref|YP_003200266.1| CarD family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554335|gb|ACV77277.1| transcriptional regulator, CarD family [Nakamurella multipartita DSM 44233] Length = 160 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 82/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I + + V G++ + V+ + + +KVP A +G+R Sbjct: 1 MVFNVGETVVYPHHGAALIQATETRTVKGVEKLYLVLKVAQGDLTVKVPADNAEIVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + Sbjct: 61 VVDRTGLDHVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E A +++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTNEVRAEGILDEVLAS 160 >gi|77462983|ref|YP_352487.1| CarD family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461857|ref|YP_001042971.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146277597|ref|YP_001167756.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|221638839|ref|YP_002525101.1| CarD family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332557859|ref|ZP_08412181.1| Transcriptional regulator, CarD family protein [Rhodobacter sphaeroides WS8N] gi|77387401|gb|ABA78586.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides 2.4.1] gi|126103521|gb|ABN76199.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides ATCC 17029] gi|145555838|gb|ABP70451.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides ATCC 17025] gi|221159620|gb|ACM00600.1| Transcriptional regulator, CarD family [Rhodobacter sphaeroides KD131] gi|332275571|gb|EGJ20886.1| Transcriptional regulator, CarD family protein [Rhodobacter sphaeroides WS8N] Length = 169 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 99/164 (60%), Positives = 127/164 (77%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + FR E +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP KA ++GMR Sbjct: 6 KPEFRPNEFVVYPAHGVGRIISIEEQEIAGIRLELFVISFEKDKMTLRVPTHKATEVGMR 65 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 LS V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHRTD Q E Sbjct: 66 SLSTPDVVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRTDDQRE 125 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +SYSERQLYE+AL R+ RE+AAV+ + E A ++ L S+++ Sbjct: 126 QSYSERQLYEAALERLTREVAAVSGVDEAGAQKAVDAVLVSRAA 169 >gi|313835593|gb|EFS73307.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA2] gi|314928689|gb|EFS92520.1| CarD-like transcriptional regulator [Propionibacterium acnes HL044PA1] gi|314970294|gb|EFT14392.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA3] Length = 181 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAI 65 + + F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP Sbjct: 16 KGVAQMTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLD 75 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R + + +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R Sbjct: 76 LVGVRDVVDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRR 135 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + S E+++ A +V E+A + + +A +++ L+S Sbjct: 136 ERDRGLSAGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 181 >gi|126733165|ref|ZP_01748912.1| transcriptional regulator, CarD family, putative [Roseobacter sp. CCS2] gi|126716031|gb|EBA12895.1| transcriptional regulator, CarD family, putative [Roseobacter sp. CCS2] Length = 168 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 99/168 (58%), Positives = 120/168 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F E +VYPAHGVG I I+ QEVAG +LE FVI+F+KDKM L+VP KA Sbjct: 1 MSKKKYDFSPNEFVVYPAHGVGKIVSIETQEVAGFELEMFVISFEKDKMTLRVPTDKATH 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMR L+ V A+K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Sbjct: 61 VGMRALATPDVVSHAMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E+SYSERQLYE+AL R+ REIAAV E A I+ L S+++ Sbjct: 121 DQREQSYSERQLYEAALERLTREIAAVAGNDENAAAAEIDSVLVSRAA 168 >gi|126738718|ref|ZP_01754414.1| transcriptional regulator, CarD family protein [Roseobacter sp. SK209-2-6] gi|126719899|gb|EBA16606.1| transcriptional regulator, CarD family protein [Roseobacter sp. SK209-2-6] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 127/166 (76%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA ++G Sbjct: 4 SKKLEFRPNDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGADEILAAKQVDEVLTSRAA 169 >gi|254463989|ref|ZP_05077400.1| transcriptional regulator, CarD family [Rhodobacterales bacterium Y4I] gi|206684897|gb|EDZ45379.1| transcriptional regulator, CarD family [Rhodobacterales bacterium Y4I] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 128/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA ++G Sbjct: 4 SKKLEFRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS +E+A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVIEQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGNDEIAAAKQVDEVLTSRAA 169 >gi|309812604|ref|ZP_07706349.1| CarD-like protein [Dermacoccus sp. Ellin185] gi|308433455|gb|EFP57342.1| CarD-like protein [Dermacoccus sp. Ellin185] Length = 160 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG TI EIK +++ G ++ V+ + + ++VP +G+R Sbjct: 1 MEFKVGETVVYPHHGAATIEEIKVRKIKGEDKQYLVLNVAQGDLTIEVPAENCDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E+ +++R + + T WSRR + K+ SGD+I +AEVVRDL R D Sbjct: 61 VVDKAGLEKVFEVLRAEHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A ++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEHTNEDKAEATLDEVLAS 160 >gi|119384562|ref|YP_915618.1| CarD family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374329|gb|ABL69922.1| transcriptional regulator, CarD family [Paracoccus denitrificans PD1222] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 100/166 (60%), Positives = 129/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A + FR + +VYP HGVG I I+EQEVAG++LE FVI+F+KDKM L+VP +A +IG Sbjct: 4 AKKTEFRPDDFVVYPTHGVGRIVSIEEQEVAGLRLEMFVISFEKDKMTLRVPTARATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS VERAL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D Q Sbjct: 64 MRGLSTPDLVERALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRNDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL+R+ RE+AAV+ + E A +E L+++++ Sbjct: 124 REQSYSERQLYEAALDRLTREVAAVSGMDEAGAQKRVETVLTARAA 169 >gi|260576851|ref|ZP_05844834.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2] gi|259020888|gb|EEW24201.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 127/166 (76%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR E +VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA +IG Sbjct: 4 SKKPEFRPNEFVVYPAHGVGKIISIEEQEIAGLHLELFVISFEKDKMTLRVPTHKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR+D Q Sbjct: 64 MRGLSSPDIVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLLSIAEVVRDLHRSDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ + E A + L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGVDEAGAQKTVGTVLTSRAA 169 >gi|84500895|ref|ZP_00999130.1| transcriptional regulator, CarD family protein [Oceanicola batsensis HTCC2597] gi|84390962|gb|EAQ03380.1| transcriptional regulator, CarD family protein [Oceanicola batsensis HTCC2597] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 96/166 (57%), Positives = 126/166 (75%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A + FR +++VYPAHGVG I I+ QE+AG+ LE FVI+F+KDKM L+VP KA ++G Sbjct: 4 AKKAEFRPNDYVVYPAHGVGQIVSIESQEIAGISLELFVISFEKDKMTLRVPTNKATEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDL+AIAEVVRDLHR D Q Sbjct: 64 MRSLSTPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLVAIAEVVRDLHRNDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E +A ++ L S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGADEVDAARKVDEVLVSRAA 169 >gi|302384121|ref|YP_003819944.1| CarD family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302194749|gb|ADL02321.1| transcriptional regulator, CarD family [Brevundimonas subvibrioides ATCC 15264] Length = 186 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 99/175 (56%), Positives = 130/175 (74%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP KA G+R L+ Sbjct: 9 FKVGDAVVYPAHGVGKVAAVEVQEVAGMSLEVYVVTFDHEKMTLRVPTKKAKTAGLRSLA 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVRDLHR DSQPE+SY Sbjct: 69 SEDVVTKALSTLKGRARIKRTMWSRRAQEYEAKINSGDLVCIAEVVRDLHRADSQPEQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 SERQLYESAL+RM RE+AA N I + A+ L+ +LS+K + + ++D A Sbjct: 129 SERQLYESALDRMAREVAAANRIDKDAAVQLLSKSLSAKKANAPVAEVADEDSEA 183 >gi|254476379|ref|ZP_05089765.1| transcriptional regulator, CarD family [Ruegeria sp. R11] gi|214030622|gb|EEB71457.1| transcriptional regulator, CarD family [Ruegeria sp. R11] Length = 169 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 127/166 (76%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KA +IG Sbjct: 4 SKKPEFRPDDYVVYPAHGVGQIISIEEQEVAGFKLELFVITFEKDKMTLRVPTHKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169 >gi|296392879|ref|YP_003657763.1| CarD family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180026|gb|ADG96932.1| transcriptional regulator, CarD family [Segniliparus rotundus DSM 44985] Length = 162 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 83/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G++ E+ V+ + ++VP A IG+R Sbjct: 1 MNFKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGHGDLTVRVPAENAEYIGIRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVSDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E++L A +V E+A S + +A L++ L+ S Sbjct: 121 SAGEKRLLAKARQVLVGELALAESSDDAKAEGLLDEVLAQAS 162 >gi|254511434|ref|ZP_05123501.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium KLH11] gi|221535145|gb|EEE38133.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium KLH11] Length = 170 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 95/166 (57%), Positives = 126/166 (75%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQ+VAG LE FVI+F+KDKM L+VP K + G Sbjct: 4 SKKLEFRPNDYVVYPAHGVGQIISIEEQDVAGFSLELFVISFEKDKMTLRVPTNKVTESG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 LRSLSSPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGADEISAAKQVDEVLTSRAA 169 >gi|317507825|ref|ZP_07965526.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253867|gb|EFV13236.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 162 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 84/162 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G++ E+ V+ + + ++VP A IG+R Sbjct: 1 MNFKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGQGDLTVRVPAENAEYIGIRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVSDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E++L A +V E+A S + +A L++ L+ S Sbjct: 121 SAGEKRLLAKARQVLVGELALAESSDDEKAECLLDEVLAEAS 162 >gi|163738513|ref|ZP_02145928.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis BS107] gi|163743575|ref|ZP_02150952.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis 2.10] gi|161383160|gb|EDQ07552.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis 2.10] gi|161388434|gb|EDQ12788.1| transcriptional regulator, CarD family protein [Phaeobacter gallaeciensis BS107] Length = 170 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 98/166 (59%), Positives = 126/166 (75%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP KA +IG Sbjct: 4 SKKPEFRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVPTNKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169 >gi|284028991|ref|YP_003378922.1| CarD family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808284|gb|ADB30123.1| transcriptional regulator, CarD family [Kribbella flavida DSM 17836] Length = 161 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ +++ G + V+ ++ + ++VP +G+R Sbjct: 1 MTFTVGETVVYPNHGAAVIEDIETRQIKGEDKTYLVLRIVAQNDLVVRVPACNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +ER ++R + T WSRR + K++SGD++ +AEVVRDL R + Sbjct: 61 DVVDQAGLERVFDVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A +++ L+S Sbjct: 121 LSAGEKRMLAKARQILVSELALAEHTNEDKAEAILDEVLAS 161 >gi|220930938|ref|YP_002507846.1| transcriptional regulator, CarD family [Halothermothrix orenii H 168] gi|219992248|gb|ACL68851.1| transcriptional regulator, CarD family [Halothermothrix orenii H 168] Length = 176 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 87/175 (49%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + + + F+ G+ +VYP HG GTI I+ + + G + +++++ M + +PV K Sbjct: 2 ANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEK 61 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 +IG+R + + + LKL++G W+RR + K+ +GD+ + EVVR+L Sbjct: 62 VEEIGVRNIIDEEEADNVLKLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLT 121 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 D + S E+++ +A ++ E+ + E E +I+ + E+ Sbjct: 122 IRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVEEIIDNVFEENPNLDEE 176 >gi|99080417|ref|YP_612571.1| CarD family transcriptional regulator [Ruegeria sp. TM1040] gi|99036697|gb|ABF63309.1| transcriptional regulator, CarD family [Ruegeria sp. TM1040] Length = 169 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 103/166 (62%), Positives = 128/166 (77%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP KAIDIG Sbjct: 4 SKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 169 >gi|220927797|ref|YP_002504706.1| CarD family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998125|gb|ACL74726.1| transcriptional regulator, CarD family [Clostridium cellulolyticum H10] Length = 159 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 76/157 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G I I+E+E+ G ++V+ + + +P DIG+R + Sbjct: 1 MYNVGDKIVYPMHGAGVIESIEEKEILGKTCSYYVMKIPIGDLKVMIPTNNITDIGIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ + W++R +E KI SGD+ +A+VVR L + + + S Sbjct: 61 ISVSEADSVFDFLKNGQHEIPSNWNKRYRENMVKIKSGDIFEVADVVRGLMQREKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 ER++ SA ++ E+ I++ + I+ L Sbjct: 121 TGERKMLSSAKQILISELVLAKGINQHDVEVKIQEYL 157 >gi|152977078|ref|YP_001376595.1| CarD family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025830|gb|ABS23600.1| transcriptional regulator, CarD family [Bacillus cytotoxicus NVH 391-98] Length = 159 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K D G+R + Sbjct: 1 MFQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVQDSGIRYV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + AL V A K W +R K+ SGD + AEVVRDL + + + Sbjct: 61 VDQTTLNHALVDVHNGAPDKSLSWKQRYTLNMEKMKSGDFVDGAEVVRDLLHRNKERTLN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A ++ E+A V ++SE +A + ++ ++ Sbjct: 121 ASEKQMLDNARRILISEVALVQNVSENQATDFLQNTIN 158 >gi|312113407|ref|YP_004011003.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii ATCC 17100] gi|311218536|gb|ADP69904.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii ATCC 17100] Length = 187 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 107/175 (61%), Positives = 134/175 (76%), Gaps = 1/175 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 GF+ E++VYP HGVG I I+EQE+AG KLE FVI F+KDKM L+VP K GMRKL Sbjct: 11 GFKANEYVVYPTHGVGRIVAIEEQEIAGCKLELFVINFEKDKMTLRVPTSKTQSAGMRKL 70 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S+A + RA++ +RG+ARVKRTMWSRRAQEY+AKINSGDLI IAEVVRDL+R+D+QPE+S Sbjct: 71 SDAAVLARAMETLRGRARVKRTMWSRRAQEYEAKINSGDLITIAEVVRDLYRSDAQPEQS 130 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 YSERQLYESAL+RM REIAA + E AI + L +K+ + K E+++K Sbjct: 131 YSERQLYESALDRMAREIAAAQDVDESIAIQKVAEAL-TKAGRLRKQEVEDEEKK 184 >gi|89069370|ref|ZP_01156729.1| transcriptional regulator, CarD family protein [Oceanicola granulosus HTCC2516] gi|89045137|gb|EAR51208.1| transcriptional regulator, CarD family protein [Oceanicola granulosus HTCC2516] Length = 171 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 99/166 (59%), Positives = 124/166 (74%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F +H+VYPAHGVG I I++QEVAG +LE FVI+F+KDKM L+VP KA ++G Sbjct: 4 SRKNEFSPNDHVVYPAHGVGQIVSIEKQEVAGFELELFVISFEKDKMTLRVPTHKAEEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q Sbjct: 64 MRSLSSPDVVAHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ REIAAV E A I+ L S+++ Sbjct: 124 REQSYSERQLYEAALERLTREIAAVGGNDEVAAAKEIDDVLVSRAA 169 >gi|326203337|ref|ZP_08193202.1| transcriptional regulator, CarD family [Clostridium papyrosolvens DSM 2782] gi|325986595|gb|EGD47426.1| transcriptional regulator, CarD family [Clostridium papyrosolvens DSM 2782] Length = 159 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 78/157 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G I I+E+E+ G K ++V+ + + +P DIG+R + Sbjct: 1 MYNVGDKIVYPMHGAGVIESIEEKEILGKKCSYYVMKIPIGDLKVMIPTNNITDIGIRGV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ + W++R +E KI SGD+ +A+VVR L + + + S Sbjct: 61 ISVSEADNVFNFLKDGQHEIPSNWNKRYRENMVKIKSGDIFEVADVVRSLMQREKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 ER++ SA ++ E+ V I++ E I+ L Sbjct: 121 TGERKMLSSAKQILISELVLVKGINQHEVEIKIQEYL 157 >gi|257068115|ref|YP_003154370.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM 4810] gi|256558933|gb|ACU84780.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM 4810] Length = 160 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 78/160 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I E+K + + G + + + + ++VP +G+R Sbjct: 1 MNFAVGETVVYPHHGAALIEEVKTRTIKGEDRTYLKLKVAQGDLTIEVPADNVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ ++R + T WSRR + K+ SGD+ +AEVVRDL R D Sbjct: 61 VVDKEGLDEVFDVLRQPYTEEPTNWSRRYKANVEKLASGDVKKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E A ++++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTDEGNAESILDEVLAS 160 >gi|260426540|ref|ZP_05780519.1| transcriptional regulator, CarD family [Citreicella sp. SE45] gi|260421032|gb|EEX14283.1| transcriptional regulator, CarD family [Citreicella sp. SE45] Length = 170 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 99/170 (58%), Positives = 126/170 (74%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + FR +++VYPAHGVG I I+EQE+AG+KLE FVI+F+KDKM L+VP KA Sbjct: 1 MTTKTKKNEFRPNDYVVYPAHGVGQIVLIEEQEIAGIKLELFVISFEKDKMTLRVPTHKA 60 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +IGMR LS V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR Sbjct: 61 SEIGMRSLSSPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHR 120 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L +++ Sbjct: 121 ADDQREQSYSERQLYEAALERLTREVAAVSGGDEVAAARQVDEVLGLRAA 170 >gi|149202302|ref|ZP_01879275.1| transcriptional regulator, CarD family protein [Roseovarius sp. TM1035] gi|149144400|gb|EDM32431.1| transcriptional regulator, CarD family protein [Roseovarius sp. TM1035] Length = 169 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 98/164 (59%), Positives = 126/164 (76%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA +IGMR Sbjct: 6 KSEFRPDDYVVYPAHGVGQIVSIEEQEIAGITLELFVISFEKDKMTLRVPTNKATEIGMR 65 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 LS V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR+D Q E Sbjct: 66 GLSSPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRSDDQRE 125 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +SYSERQLYE+AL R+ RE+AAV+ E A ++ L S+++ Sbjct: 126 QSYSERQLYEAALERLTREVAAVSGGDEVLAARKVDEVLVSRAA 169 >gi|114764920|ref|ZP_01444093.1| transcriptional regulator, CarD family protein [Pelagibaca bermudensis HTCC2601] gi|114542632|gb|EAU45656.1| transcriptional regulator, CarD family protein [Roseovarius sp. HTCC2601] Length = 169 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 100/166 (60%), Positives = 126/166 (75%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR +++VYPAHGVG I I+EQEVAGM LE FVI+F+KDKM L+VP KA +IG Sbjct: 4 SKKNEFRPNDYVVYPAHGVGQIMSIEEQEVAGMTLELFVISFEKDKMTLRVPTHKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q Sbjct: 64 MRSLSSPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L +++ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVSGGDEVAAARQVDEVLGLRAA 169 >gi|311741767|ref|ZP_07715578.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314773|gb|EFQ84679.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 161 Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 90/161 (55%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ +++ G + ++ V+ ++ + ++VP +G+R Sbjct: 1 MAFTVGETVVYPNHGAAVIEDIETRKIKGEERDYLVLRIIAQNDLVVRVPACNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + +A +ER ++R + + T WSRR + K++SGD++ +AEVVRDL R D + Sbjct: 61 DVVDADGLERVFSVLRAEHVEEPTNWSRRYKANLEKLHSGDVLKVAEVVRDLWRRDHERG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A ++ L+S Sbjct: 121 LSAGEKRMLAKARQILVSELALAENTNEDKAELRLDEVLAS 161 >gi|297572193|ref|YP_003697967.1| CarD family transcripitonal regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932540|gb|ADH93348.1| transcriptional regulator, CarD family [Arcanobacterium haemolyticum DSM 20595] Length = 181 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 88/177 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I +I E+ + G K + + + M ++VP +G+R Sbjct: 1 MSFKVGETVVYPHHGAAYIEDISEKMMRGEKRLYLTLRIIQGDMVIQVPADSIEQVGLRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +S +ER ++R + + + WSRR + K+ SGD+ +AEVVRDL R +S Sbjct: 61 VSNDEQLERVFAVLREENVEEPSNWSRRYKANGEKLTSGDVNKVAEVVRDLTRRNSDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 S E+++ A + E+A IS+ EA L+ L + + S S ++A Sbjct: 121 SAGEKRMLAQARGILGSEVALGRGISDEEAAELLNEILGEFTPSPDSSESAGTPESA 177 >gi|50955384|ref|YP_062672.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951866|gb|AAT89567.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 160 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 85/160 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R Sbjct: 1 MLFEVGETVVYPHHGAATITEVKKRTIKGEEKLYLKLNVTQGDLTIEVPADNVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I ++EVVRDL R D Sbjct: 61 VIGREGLDRVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A ++ E+A + +A +L++ L+S Sbjct: 121 SAGEKRMLAKARQILISELALAEKTDDEKASSLLDEVLAS 160 >gi|294678311|ref|YP_003578926.1| CarD family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477131|gb|ADE86519.1| transcriptional regulator, CarD family [Rhodobacter capsulatus SB 1003] Length = 169 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 97/164 (59%), Positives = 126/164 (76%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + FR + +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP KA+DIGMR Sbjct: 6 KTEFRPDDFVVYPAHGVGKIISIEEQEIAGLRLELFVISFEKDKMTLRVPTHKAVDIGMR 65 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 LS V +AL+ ++GKA+VKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D Q E Sbjct: 66 GLSSPDVVTKALETLKGKAKVKRAMWSRRAQEYEQKINSGDLLSIAEVVRDLHRADDQRE 125 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +SYSERQLYE+AL R+ RE+AAV+ E A ++ L +++ Sbjct: 126 QSYSERQLYEAALERLTREVAAVSGTDEAGAAKKVDEVLVGRAA 169 >gi|16124906|ref|NP_419470.1| hypothetical protein CC_0653 [Caulobacter crescentus CB15] gi|221233627|ref|YP_002516063.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000] gi|13421868|gb|AAK22638.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962799|gb|ACL94155.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000] Length = 185 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 99/168 (58%), Positives = 124/168 (73%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 F G+H+VYPAHGVG+I I+ QEVAGM LE +VI FD +KM L+VP KA Sbjct: 18 NMSKTGLEFSVGDHVVYPAHGVGSIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTKKAK 77 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 G+R L+E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR Sbjct: 78 TAGLRPLAEGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRA 137 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++QPE+SYSERQLYESAL+RM RE+AA+ I AI ++ +L + Sbjct: 138 ENQPEQSYSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKAA 185 >gi|329890831|ref|ZP_08269174.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568] gi|328846132|gb|EGF95696.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568] Length = 181 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 97/168 (57%), Positives = 125/168 (74%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F+ G+ +VYPAHGVG + I+ QEVAGM LE +V+ F+ +KM L+VP KA Sbjct: 2 TSKTGLEFKVGDAVVYPAHGVGKVAAIETQEVAGMALEVYVVTFEHEKMTLRVPTKKAKT 61 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R L+ V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR + Sbjct: 62 AGLRTLAADDTVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE 121 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +QPE+SYSERQLYESAL+RM RE+AA N I + A+ L+ +LS+K Sbjct: 122 TQPEQSYSERQLYESALDRMAREVAAANKIDKDAAMALLGKSLSAKKP 169 >gi|254418588|ref|ZP_05032312.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3] gi|196184765|gb|EDX79741.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3] Length = 176 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 97/168 (57%), Positives = 125/168 (74%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP KA Sbjct: 2 TSKTGLEFKVGDAVVYPAHGVGKVAAVETQEVAGMSLEVYVVTFDHEKMTLRVPTKKAAT 61 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R L+ V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR D Sbjct: 62 AGLRSLAADDVVTKALTTLKGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAD 121 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +QPE+SYSERQLYESAL+RM RE+AA N I + A+ L+ +LS+K Sbjct: 122 TQPEQSYSERQLYESALDRMAREVAAANKIDKDAAVELLAKSLSAKKP 169 >gi|154252146|ref|YP_001412970.1| CarD family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156096|gb|ABS63313.1| transcriptional regulator, CarD family [Parvibaculum lavamentivorans DS-1] Length = 350 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 108/178 (60%), Positives = 136/178 (76%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R F+ E +VYPAHGVG I +I+EQEVAG KLE FVI FDK+KM L+VP KA +GMR Sbjct: 173 RANFKAKEFVVYPAHGVGQILDIEEQEVAGHKLELFVINFDKEKMTLRVPTNKAGAVGMR 232 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 KLS+A V+ A++ +RG+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDL+R++ QPE Sbjct: 233 KLSDAGVVDSAIETLRGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLYRSERQPE 292 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 +SYSERQLYE+AL+RM RE+AAV I E AI +E L + + S+ +AA Sbjct: 293 QSYSERQLYEAALDRMAREVAAVERIGEDAAIERVEQALQGAAKTDKAPKSDEASEAA 350 >gi|325962196|ref|YP_004240102.1| CarD family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468283|gb|ADX71968.1| transcriptional regulator, CarD family [Arthrobacter phenanthrenivorans Sphe3] Length = 160 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R Sbjct: 1 MVFEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D Sbjct: 61 VVGKDGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A ++ E+A E +A ++++ L+S Sbjct: 121 SAGEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160 >gi|332976449|gb|EGK13297.1| CarD family transcriptional regulator [Desmospora sp. 8437] Length = 162 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 81/158 (51%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M + F+ G+ IVYP HG G I ++E+E+ G K +++I + + +P + D+G+ Sbjct: 1 MGRLFQVGDKIVYPLHGAGVIDAVEEKEILGKKQRYYIIHMSLGNVQIMIPADRIDDMGL 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + +E L W++R + K+ +GD+ EV+RDL + + + Sbjct: 61 RHIVDPDTMENVFLLFNDDPSASSGSWNQRFRMNMDKMKTGDIFKTTEVIRDLAQINKEK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 E++L ++A ++ E+ V I E +AI L++ Sbjct: 121 SLGTGEKKLLDNAKQILISELVLVKEIEEEQAIQLLDE 158 >gi|262200966|ref|YP_003272174.1| transcription factor CarD [Gordonia bronchialis DSM 43247] gi|262084313|gb|ACY20281.1| transcription factor CarD [Gordonia bronchialis DSM 43247] Length = 162 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 87/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R Sbjct: 1 MNFKVGDTVVYPHHGAARVEDIVTRTIKGEQIEYLVLKVADGDMTVQIPSTKLEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + Sbjct: 61 VVGQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E++ + + +A ++++ L++ S Sbjct: 121 SAGEKRMLTRARRVLVDELSLAQNTDDEKATSILDEVLAAAS 162 >gi|254449905|ref|ZP_05063342.1| transcriptional regulator, CarD family [Octadecabacter antarcticus 238] gi|198264311|gb|EDY88581.1| transcriptional regulator, CarD family [Octadecabacter antarcticus 238] Length = 170 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 96/168 (57%), Positives = 120/168 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + + + +VYPAHGVG I I+ QE+AG +LE FVIAF+KDKM L+VP KA D Sbjct: 1 MAKKKYDYSPNDFVVYPAHGVGKIVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAED 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMR L+ V +K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Sbjct: 61 VGMRSLASTEVVADCMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E+SYSERQLYE+AL R+ RE AAV + +E EA I L S++ Sbjct: 121 DQREQSYSERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSRAP 168 >gi|291297677|ref|YP_003508955.1| CarD family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566897|gb|ADD39862.1| transcriptional regulator, CarD family [Stackebrandtia nassauensis DSM 44728] Length = 161 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 86/161 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I ++ + + G++ E+ V+ ++ + ++VP G +G+R+ Sbjct: 1 MSFSVGETVVYPHHGAALIEAVETRTIKGVEQEYLVLRVEQGDLTVRVPAGNVELVGVRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + A + ++R + T WSRR + K+ SG+ + +AEVVRDL R D + Sbjct: 61 VVGAEGLTEVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRDRERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + +V E+A + ++ +A L++ L+ Sbjct: 121 SAGEKRMLTKARDILVGEVALAEASTKDDAEVLLDKVLAEA 161 >gi|188584806|ref|YP_001916351.1| transcriptional regulator, CarD family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349493|gb|ACB83763.1| transcriptional regulator, CarD family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 161 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 87/161 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I ++E+EV G K ++++ M + +P + IG+R++ Sbjct: 1 MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + V++ L +++ + W++R + KI SGD+ +AEV+R+L D + S Sbjct: 61 VDKNSVKKVLAILKAEETNVNHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E+++ E+A +V E+ I E +A +I L + S Sbjct: 121 TGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTTS 161 >gi|116669291|ref|YP_830224.1| CarD family transcriptional regulator [Arthrobacter sp. FB24] gi|119961222|ref|YP_946691.1| CarD-like transcriptional regulator [Arthrobacter aurescens TC1] gi|220911627|ref|YP_002486936.1| CarD family transcripitonal regulator [Arthrobacter chlorophenolicus A6] gi|116609400|gb|ABK02124.1| transcriptional regulator, CarD family [Arthrobacter sp. FB24] gi|119948081|gb|ABM06992.1| putative CarD-like transcriptional regulator [Arthrobacter aurescens TC1] gi|219858505|gb|ACL38847.1| transcriptional regulator, CarD family [Arthrobacter chlorophenolicus A6] Length = 160 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R Sbjct: 1 MVFEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D Sbjct: 61 VVGKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A ++ E+A E +A ++++ L+S Sbjct: 121 SAGEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160 >gi|158319511|ref|YP_001512018.1| CarD family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139710|gb|ABW18022.1| transcriptional regulator, CarD family [Alkaliphilus oremlandii OhILAs] Length = 167 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 84/157 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYP HG G I I+E+E+ G + +++++ M + +P+ + DIG+RK+ Sbjct: 1 MFNIGEKVVYPIHGAGVIESIEEREILGERRKYYIMKMPIGDMQVMIPLDQIDDIGIRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + L+++ W+RR + I +GD+ +A+VVR+L + + S Sbjct: 61 IDVEEIGSVLEILASDTTKMHQNWNRRYRANMDLIKTGDIYEVADVVRNLTLMEKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 ER++ +A ++ EI V ISE EA L+E + Sbjct: 121 TGERKMLNNARQILLSEIVLVAEISEEEASKLVEKVI 157 >gi|326332061|ref|ZP_08198346.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium Broad-1] gi|325950199|gb|EGD42254.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium Broad-1] Length = 161 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ + + G + ++ V+ + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPNHGAAVIEDIEMRTIKGEERQYLVLRIIAQQDLVVRVPANNLELVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + ++R +++R + + T WSRR + K++SGD++ +AEVVRDL R + Sbjct: 61 DVVDKDGLDRVFEVLRAEHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A L++ L+S Sbjct: 121 LSAGEKRMLAKARQILVSELALCEHTNEDKAEVLLDEVLAS 161 >gi|84498455|ref|ZP_00997225.1| transcriptional regulator, CarD-like regulator [Janibacter sp. HTCC2649] gi|84381198|gb|EAP97082.1| transcriptional regulator, CarD-like regulator [Janibacter sp. HTCC2649] Length = 160 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I EI ++ + G++ + + + + ++VP +G+R Sbjct: 1 MVFKVGETVVYPHHGAARIEEINKRTIKGVERLYLKLKVAQGDLVIEVPAENCDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E+ +++R + T WSRR + K+ SGD+I +AEVVRDL R D Sbjct: 61 VVDKAGLEKVFEVLRAPFAEEPTNWSRRFKANLEKLASGDVIKVAEVVRDLWRRDKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLSKARQILVSELALAEKTDEEKAETILDEVLAS 160 >gi|119718259|ref|YP_925224.1| CarD family transcriptional regulator [Nocardioides sp. JS614] gi|119538920|gb|ABL83537.1| transcriptional regulator, CarD family [Nocardioides sp. JS614] Length = 161 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ +++ G ++ V+ + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + ++R ++R + T WSRR + K++SGD++ +AEVVRDL R + Sbjct: 61 DVVDKEGLDRVFDVLRAAHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A L++ L+S Sbjct: 121 LSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS 161 >gi|89893187|ref|YP_516674.1| hypothetical protein DSY0441 [Desulfitobacterium hafniense Y51] gi|219666460|ref|YP_002456895.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332635|dbj|BAE82230.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536720|gb|ACL18459.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 158 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 84/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+EV G +++V+ M + +P+ +G+R + Sbjct: 1 MFDIGDRVVYPMHGAGIIEAIEEREVLGESHQYYVMNIPVGNMKVYIPLKNVNQLGIRGV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V + LK++ ++ + W+RR + +I SGD+ ++AEVVR L + D + S Sbjct: 61 ISSEEVPQVLKILENESTLPALAWNRRYRANMDRIKSGDIYSVAEVVRSLSQRDREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++Y++A +V E+ + E I+ L+ Sbjct: 121 TGEKKMYDNAYQILVSELILAEGVQADEMSERIKGLLA 158 >gi|150392190|ref|YP_001322239.1| CarD family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952052|gb|ABR50580.1| transcriptional regulator, CarD family [Alkaliphilus metalliredigens QYMF] Length = 159 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 77/156 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ IVYP HG G I I+E+E+ G K +++++ M + +P+ ++G+R + Sbjct: 1 MFNIGDKIVYPMHGAGVIEAIEEKEILGKKRKYYIMKMPLGDMQVMIPLDHIEEVGIRSI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE+ ++ W+RR + I GD+ A+AEVVR+L D + S Sbjct: 61 IGLAEVEQVFAVLAADTTKMPQNWNRRYRANMDLIKGGDIYAVAEVVRNLLLRDREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 ER++ +A +V E+ E E ++ IE Sbjct: 121 TGERKMLNNAKQILVSEVVLSTDKEEQEVLDWIENV 156 >gi|328908150|gb|EGG27909.1| putative transcriptional regulator [Propionibacterium sp. P08] Length = 161 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 86/161 (53%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R Sbjct: 1 MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R + Sbjct: 61 DVVDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + + +A +++ L+S Sbjct: 121 LSAGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 161 >gi|332669115|ref|YP_004452123.1| CarD family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338153|gb|AEE44736.1| transcriptional regulator, CarD family [Cellulomonas fimi ATCC 484] Length = 160 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPHHGAALIEEIKTRTIRGEDKIYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ Sbjct: 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEHTEEEKAEAILDEVLAS 160 >gi|229087271|ref|ZP_04219415.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44] gi|228696061|gb|EEL48902.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44] Length = 164 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVATSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + L W +R K+ +GDL AEVVRDL R + + + Sbjct: 67 DKNTLNDVLVGFHNGEADSSLSWKQRYTMNMEKMKNGDLSDGAEVVRDLIRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A ++ E+A V ++SE +A + ++ ++ Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATDFLQDTIN 163 >gi|302870278|ref|YP_003838915.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029] gi|315503446|ref|YP_004082333.1| transcriptional regulator, card family [Micromonospora sp. L5] gi|302573137|gb|ADL49339.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029] gi|315410065|gb|ADU08182.1| transcriptional regulator, CarD family [Micromonospora sp. L5] Length = 161 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 82/161 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I I+ + + G E+ V+ + + ++VP A +G+R+ Sbjct: 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEPREYLVLRVAQGDLTVRVPAENAEIVGVRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + Sbjct: 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + +V E+A ++ EA L++ L+ Sbjct: 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161 >gi|238061419|ref|ZP_04606128.1| CarD family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|330470463|ref|YP_004408206.1| transcriptional regulator, card family protein [Verrucosispora maris AB-18-032] gi|237883230|gb|EEP72058.1| CarD family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|328813434|gb|AEB47606.1| transcriptional regulator, card family protein [Verrucosispora maris AB-18-032] Length = 161 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 82/161 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I I+ + + G ++ V+ + + ++VP A +G+R+ Sbjct: 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEPKQYLVLRVAQGDLTVRVPAENAEIVGVRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + Sbjct: 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + +V E+A ++ EA L++ L+ Sbjct: 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161 >gi|295691061|ref|YP_003594754.1| CarD family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432964|gb|ADG12136.1| transcriptional regulator, CarD family [Caulobacter segnis ATCC 21756] Length = 167 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 99/167 (59%), Positives = 123/167 (73%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F G+H+VYPAHGVG I I+ QEVAGM LE +VI FD +KM L+VP KA Sbjct: 1 MSKTGLEFSVGDHVVYPAHGVGNIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTKKAKT 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R L+E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR + Sbjct: 61 AGLRPLAEGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 +QPE+SYSERQLYESAL+RM RE+AA+ I AI ++ +L + Sbjct: 121 NQPEQSYSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKAA 167 >gi|269796457|ref|YP_003315912.1| CarD family transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269098642|gb|ACZ23078.1| transcriptional regulator, CarD family [Sanguibacter keddieii DSM 10542] Length = 160 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPHHGAALIEEIKTRTIRGEDKLYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDADRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLARARQILVSELALAEHTEEEKAEAILDEVLAS 160 >gi|126727502|ref|ZP_01743336.1| putative CarD-like transcriptional regulator [Rhodobacterales bacterium HTCC2150] gi|126703282|gb|EBA02381.1| putative CarD-like transcriptional regulator [Rhodobacterales bacterium HTCC2150] Length = 172 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 99/164 (60%), Positives = 123/164 (75%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 FR E +VYPAHGVG I I++QE+AG+++E FV+AF+KDKM L+VP KA+ +GMR Sbjct: 6 NYAFRPNEFVVYPAHGVGQIVRIEDQEIAGIEMELFVVAFEKDKMTLRVPTEKALHVGMR 65 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 LS V RA+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E Sbjct: 66 SLSSPETVTRAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDEQRE 125 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +SYSERQLYE+AL R+ RE+AAV E A I+ L S++ Sbjct: 126 QSYSERQLYEAALERLTREVAAVGGTDEVVAGQQIDGVLMSRAP 169 >gi|144899571|emb|CAM76435.1| Transcription factor CarD-like [Magnetospirillum gryphiswaldense MSR-1] Length = 164 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 86/160 (53%), Positives = 118/160 (73%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + I+ QE+ GMKL+ FVI F++D+M L+VPV KA G+RKL Sbjct: 5 SFAEGDYVVYPTHGVGQVMAIENQEIGGMKLQLFVITFERDRMTLRVPVAKATKSGLRKL 64 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDL+R +QP++S Sbjct: 65 SSRKDMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRNANQPDQS 124 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 YSERQ+YE+AL R+ E+AAV I A + L++ Sbjct: 125 YSERQIYEAALERLAAELAAVEGIDAEAAAAKLCELLAAA 164 >gi|126729325|ref|ZP_01745139.1| transcriptional regulator, CarD family protein [Sagittula stellata E-37] gi|126710315|gb|EBA09367.1| transcriptional regulator, CarD family protein [Sagittula stellata E-37] Length = 171 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 98/166 (59%), Positives = 124/166 (74%), Gaps = 1/166 (0%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A + FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA ++G Sbjct: 7 AKKAEFRPNDYVVYPAHGVGQIVSIEEQEIAGISLELFVISFEKDKMTLRVPTHKASEVG 66 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Q Sbjct: 67 MRSLSSPDVVSEAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADDQ 126 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE+AL R+ RE+AAV E A ++ L +++ Sbjct: 127 REQSYSERQLYEAALERLTREVAAVTG-DEAAAAKQVDEVLGLRAA 171 >gi|83859720|ref|ZP_00953240.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii HTCC2633] gi|83852079|gb|EAP89933.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii HTCC2633] Length = 172 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 91/170 (53%), Positives = 128/170 (75%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K + F+ +++VYPAHGVG + ++++ VAG +E +V++F++DKM L+VP KA Sbjct: 3 KKSANDNKTFKKSDYVVYPAHGVGRVVGVEKESVAGFDIEVYVVSFEQDKMTLRVPTAKA 62 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 GMR L+ ++ ALK ++GK +VKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR Sbjct: 63 TAAGMRPLASDDVLKDALKTLKGKPKVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHR 122 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + QPE SYSERQLYESAL+RMVRE+AAV + +A+ ++ L+ K++ Sbjct: 123 QEDQPEPSYSERQLYESALDRMVREVAAVEKVDREKALEMLTTTLTKKAA 172 >gi|269957734|ref|YP_003327523.1| CarD family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306415|gb|ACZ31965.1| transcriptional regulator, CarD family [Xylanimonas cellulosilytica DSM 15894] Length = 160 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R Sbjct: 1 MTFEVGETVVYPHHGAALIEEIKVRTIRGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ Sbjct: 61 VVDQQGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLSKARQILVSELALAEHTEEDKAEAILDEVLAS 160 >gi|145596771|ref|YP_001161068.1| transcription factor CarD [Salinispora tropica CNB-440] gi|159040183|ref|YP_001539436.1| CarD family transcriptional regulator [Salinispora arenicola CNS-205] gi|145306108|gb|ABP56690.1| transcriptional regulator, CarD family [Salinispora tropica CNB-440] gi|157919018|gb|ABW00446.1| transcriptional regulator, CarD family [Salinispora arenicola CNS-205] Length = 161 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 83/161 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R+ Sbjct: 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLRVAQGDLTVRVPAENAEIVGVRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + Sbjct: 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + +V E+A ++ EA L++ L+ Sbjct: 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161 >gi|225022144|ref|ZP_03711336.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii ATCC 33806] gi|224945077|gb|EEG26286.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii ATCC 33806] Length = 235 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 77/157 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R Sbjct: 40 MEFKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRD 99 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + +R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 100 VVGEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGL 159 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 S E+++ A +V E+A E +A L+ Sbjct: 160 SAGEKRMLAKARQVLVGELALAEIKDEAKANELLAEV 196 >gi|308176321|ref|YP_003915727.1| CarD transcriptional regulator-like protein [Arthrobacter arilaitensis Re117] gi|307743784|emb|CBT74756.1| CarD transcriptional regulator-like protein [Arthrobacter arilaitensis Re117] Length = 161 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 84/161 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK +++ G + + + + + ++VP +G+R Sbjct: 1 MVFEVGETVVYPHHGAAMIEEIKMRKIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ ++R + + T WSRR + K+ SGD+I +AEVVRDL R ++ Sbjct: 61 VVGQEGLDHVFDVLRAEFTEEPTNWSRRYKANVEKLASGDVIKVAEVVRDLWRRENDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A ++ E+A + E +A +L++ L+S Sbjct: 121 SAGEKRMLAKARQVLISELALAKDLDEAKAESLLDEVLASA 161 >gi|50841843|ref|YP_055070.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] gi|289424334|ref|ZP_06426117.1| CarD-like protein [Propionibacterium acnes SK187] gi|289428813|ref|ZP_06430493.1| CarD-like protein [Propionibacterium acnes J165] gi|295129919|ref|YP_003580582.1| CarD-like protein [Propionibacterium acnes SK137] gi|50839445|gb|AAT82112.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] gi|289155031|gb|EFD03713.1| CarD-like protein [Propionibacterium acnes SK187] gi|289157814|gb|EFD06037.1| CarD-like protein [Propionibacterium acnes J165] gi|291375973|gb|ADD99827.1| CarD-like protein [Propionibacterium acnes SK137] gi|313765551|gb|EFS36915.1| CarD-like transcriptional regulator [Propionibacterium acnes HL013PA1] gi|313772900|gb|EFS38866.1| CarD-like transcriptional regulator [Propionibacterium acnes HL074PA1] gi|313793078|gb|EFS41145.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA1] gi|313802474|gb|EFS43696.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA2] gi|313806489|gb|EFS44996.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA2] gi|313811040|gb|EFS48754.1| CarD-like transcriptional regulator [Propionibacterium acnes HL083PA1] gi|313814459|gb|EFS52173.1| CarD-like transcriptional regulator [Propionibacterium acnes HL025PA1] gi|313815048|gb|EFS52762.1| CarD-like transcriptional regulator [Propionibacterium acnes HL059PA1] gi|313817358|gb|EFS55072.1| CarD-like transcriptional regulator [Propionibacterium acnes HL046PA2] gi|313821898|gb|EFS59612.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA1] gi|313824206|gb|EFS61920.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA2] gi|313826574|gb|EFS64288.1| CarD-like transcriptional regulator [Propionibacterium acnes HL063PA1] gi|313828758|gb|EFS66472.1| CarD-like transcriptional regulator [Propionibacterium acnes HL063PA2] gi|313831803|gb|EFS69517.1| CarD-like transcriptional regulator [Propionibacterium acnes HL007PA1] gi|313834653|gb|EFS72367.1| CarD-like transcriptional regulator [Propionibacterium acnes HL056PA1] gi|313840116|gb|EFS77830.1| CarD-like transcriptional regulator [Propionibacterium acnes HL086PA1] gi|314915809|gb|EFS79640.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA4] gi|314917081|gb|EFS80912.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA1] gi|314921357|gb|EFS85188.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA3] gi|314922287|gb|EFS86118.1| CarD-like transcriptional regulator [Propionibacterium acnes HL001PA1] gi|314926712|gb|EFS90543.1| CarD-like transcriptional regulator [Propionibacterium acnes HL036PA3] gi|314931320|gb|EFS95151.1| CarD-like transcriptional regulator [Propionibacterium acnes HL067PA1] gi|314954856|gb|EFS99262.1| CarD-like transcriptional regulator [Propionibacterium acnes HL027PA1] gi|314958792|gb|EFT02894.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA1] gi|314961081|gb|EFT05182.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA2] gi|314964491|gb|EFT08591.1| CarD-like transcriptional regulator [Propionibacterium acnes HL082PA1] gi|314965395|gb|EFT09494.1| CarD-like transcriptional regulator [Propionibacterium acnes HL082PA2] gi|314969590|gb|EFT13688.1| CarD-like transcriptional regulator [Propionibacterium acnes HL037PA1] gi|314974656|gb|EFT18751.1| CarD-like transcriptional regulator [Propionibacterium acnes HL053PA1] gi|314977148|gb|EFT21243.1| CarD-like transcriptional regulator [Propionibacterium acnes HL045PA1] gi|314980436|gb|EFT24530.1| CarD-like transcriptional regulator [Propionibacterium acnes HL072PA2] gi|314982506|gb|EFT26599.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA3] gi|314985754|gb|EFT29846.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA1] gi|314987277|gb|EFT31368.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA2] gi|314989179|gb|EFT33270.1| CarD-like transcriptional regulator [Propionibacterium acnes HL005PA3] gi|315078494|gb|EFT50525.1| CarD-like transcriptional regulator [Propionibacterium acnes HL053PA2] gi|315082043|gb|EFT54019.1| CarD-like transcriptional regulator [Propionibacterium acnes HL078PA1] gi|315082817|gb|EFT54793.1| CarD-like transcriptional regulator [Propionibacterium acnes HL027PA2] gi|315086173|gb|EFT58149.1| CarD-like transcriptional regulator [Propionibacterium acnes HL002PA3] gi|315087758|gb|EFT59734.1| CarD-like transcriptional regulator [Propionibacterium acnes HL072PA1] gi|315091050|gb|EFT63026.1| CarD-like transcriptional regulator [Propionibacterium acnes HL110PA4] gi|315094138|gb|EFT66114.1| CarD-like transcriptional regulator [Propionibacterium acnes HL060PA1] gi|315097488|gb|EFT69464.1| CarD-like transcriptional regulator [Propionibacterium acnes HL038PA1] gi|315099939|gb|EFT71915.1| CarD-like transcriptional regulator [Propionibacterium acnes HL059PA2] gi|315101748|gb|EFT73724.1| CarD-like transcriptional regulator [Propionibacterium acnes HL046PA1] gi|315104787|gb|EFT76763.1| CarD-like transcriptional regulator [Propionibacterium acnes HL050PA2] gi|315106406|gb|EFT78382.1| CarD-like transcriptional regulator [Propionibacterium acnes HL030PA1] gi|315110296|gb|EFT82272.1| CarD-like transcriptional regulator [Propionibacterium acnes HL030PA2] gi|327329340|gb|EGE71100.1| transcriptional regulator, CarD family [Propionibacterium acnes HL103PA1] gi|327331426|gb|EGE73165.1| transcriptional regulator, CarD family [Propionibacterium acnes HL096PA2] gi|327333413|gb|EGE75133.1| transcriptional regulator, CarD family [Propionibacterium acnes HL096PA3] gi|327334936|gb|EGE76647.1| transcriptional regulator, CarD family [Propionibacterium acnes HL097PA1] gi|327445569|gb|EGE92223.1| CarD-like transcriptional regulator [Propionibacterium acnes HL013PA2] gi|327447189|gb|EGE93843.1| CarD-like transcriptional regulator [Propionibacterium acnes HL043PA1] gi|327449777|gb|EGE96431.1| CarD-like transcriptional regulator [Propionibacterium acnes HL043PA2] gi|327454626|gb|EGF01281.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA3] gi|327456698|gb|EGF03353.1| CarD-like transcriptional regulator [Propionibacterium acnes HL083PA2] gi|327457026|gb|EGF03681.1| CarD-like transcriptional regulator [Propionibacterium acnes HL092PA1] gi|328755681|gb|EGF69297.1| CarD-like transcriptional regulator [Propionibacterium acnes HL087PA1] gi|328756461|gb|EGF70077.1| CarD-like transcriptional regulator [Propionibacterium acnes HL025PA2] gi|328758809|gb|EGF72425.1| CarD-like transcriptional regulator [Propionibacterium acnes HL020PA1] gi|328761841|gb|EGF75353.1| transcriptional regulator, CarD family [Propionibacterium acnes HL099PA1] gi|332674759|gb|AEE71575.1| putative transcriptional regulator [Propionibacterium acnes 266] Length = 161 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 85/161 (52%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R Sbjct: 1 MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +E +++R + + WSRR + K++SG+++ +AEVVRDL R + Sbjct: 61 DVVDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +++ A +++ L+S Sbjct: 121 LSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161 >gi|125975421|ref|YP_001039331.1| CarD family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005283|ref|ZP_05430249.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 2360] gi|281419382|ref|ZP_06250397.1| transcriptional regulator, CarD family [Clostridium thermocellum JW20] gi|125715646|gb|ABN54138.1| transcriptional regulator, CarD family [Clostridium thermocellum ATCC 27405] gi|255990719|gb|EEU00835.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 2360] gi|281407002|gb|EFB37265.1| transcriptional regulator, CarD family [Clostridium thermocellum JW20] gi|316939546|gb|ADU73580.1| transcriptional regulator, CarD family [Clostridium thermocellum DSM 1313] Length = 158 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 84/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G I I+E+E+ G K ++V+ +M + +P+ IG+R++ Sbjct: 1 MYNIGDKIVYPMHGAGVIESIEEREILGKKQSYYVVKIPIGEMKVLIPIKNVDGIGIREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ +++ KA T W++R +E +KI SG++ +A+VVR L D S Sbjct: 61 ISEEDADKVFLILKNKALPSNTNWNKRYRENMSKIKSGNIFEVADVVRCLMLRDKLKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E+++ SA ++ E+ +++ E +I+ +S Sbjct: 121 TGEKKMLNSAKQILISELVLAKNMNPMEIEGMIDKYIS 158 >gi|312144273|ref|YP_003995719.1| transcriptional regulator, CarD family [Halanaerobium sp. 'sapolanicus'] gi|311904924|gb|ADQ15365.1| transcriptional regulator, CarD family [Halanaerobium sp. 'sapolanicus'] Length = 166 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 77/155 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG GTI I+ + + K +++++ +M + +PV K IG+R + Sbjct: 1 MYKIGDKVVYPNHGAGTIVGIETKTILDEKKKYYIMKLPIGEMKVMIPVDKIDKIGIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 KL+ G+ W+RR + K+ +GD+ +AEVVR+L D + S Sbjct: 61 ISEEKANDVFKLLNGEKSKMSQNWNRRYRANQEKLKTGDIFEVAEVVRNLSIRDREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 E+++ +A ++ E+ + E E ++ Sbjct: 121 TGEKKMLSNARKILISELVLAKDMDEEEIAEKMDD 155 >gi|256833291|ref|YP_003162018.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM 20603] gi|256686822|gb|ACV09715.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM 20603] Length = 161 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 80/161 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + ++VP +G+R Sbjct: 1 MSFTVGETVVYPHHGAALIEEIKTRTIRGEDKTYLKLRVAQGDLVIEVPAENIDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVGKEGLDEVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDTDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLSRARQILVSELALAERTEEDKAEAILDEVLASS 161 >gi|296284819|ref|ZP_06862817.1| transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 182 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 89/176 (50%), Positives = 127/176 (72%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K Sbjct: 6 MAAKALAFDVGDYVVYPKHGVGRVVELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVEA 65 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 IGMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 66 IGMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRPD 125 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L + + ++T E Sbjct: 126 DQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALEKILSVLREHAPQYYENTEE 181 >gi|329848406|ref|ZP_08263434.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19] gi|328843469|gb|EGF93038.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19] Length = 172 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 93/171 (54%), Positives = 123/171 (71%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 R F G+ +VYPAHGVGT+ ++ QEVAG LE FV+ FD +KM L+VP Sbjct: 2 SADTLTLSRFDFSVGDKVVYPAHGVGTVAAVETQEVAGYALEVFVVTFDHEKMTLRVPTK 61 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 KA G+R L+ + +AL ++G+AR+KRTMWSRRAQEY+AKINSG L+++AEVVRDL Sbjct: 62 KAKTAGLRHLAAEAVMSQALVTLKGRARIKRTMWSRRAQEYEAKINSGCLVSLAEVVRDL 121 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 +R+DSQPE+SYSERQLYESAL+RM RE+AA+ I A+ L+ NL+ + Sbjct: 122 YRSDSQPEQSYSERQLYESALDRMAREVAAIEKIDRDAAVALLNKNLTKAA 172 >gi|309389958|gb|ADO77838.1| transcriptional regulator, CarD family [Halanaerobium praevalens DSM 2228] Length = 168 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 78/165 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG GTI I + + K E++++ +M + +PV K IG+R + Sbjct: 1 MYKIGDKVVYPNHGAGTIVGIDTKTILDEKKEYYIMKLPIGEMKVMIPVDKIDKIGIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +L+ G+ W+RR + K+ +GD+ +AEVVR+L D S Sbjct: 61 ISEEKADEVFELLDGEKSKMSQNWNRRFRANQEKLKTGDIFEVAEVVRNLSIRDRDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 E+++ +A ++ E+ + E ++ + + + Sbjct: 121 TGEKKMLSNARQILISELVLAKDMDEESVSEKMDDLFTLSEEEVD 165 >gi|88855757|ref|ZP_01130420.1| transcriptional regulator, CarD-like regulator [marine actinobacterium PHSC20C1] gi|88815081|gb|EAR24940.1| transcriptional regulator, CarD-like regulator [marine actinobacterium PHSC20C1] Length = 160 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R Sbjct: 1 MLFEVGETVVYPHHGAATITEVKKRTIKGEEKIYLKLNVTQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + K+ SGD+I ++EVVRDL R D Sbjct: 61 VIGREGLDQVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A ++ E+A E +A +++ L+S Sbjct: 121 SAGEKRMLAKARQILISELALAEKTDEEKASLVLDEVLAS 160 >gi|323359180|ref|YP_004225576.1| CarD family transcriptional regulator [Microbacterium testaceum StLB037] gi|323275551|dbj|BAJ75696.1| transcriptional regulator, similar to M. xanthus CarD [Microbacterium testaceum StLB037] Length = 160 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TI E+KE+ + G ++ + + + ++VP +G+R Sbjct: 1 MLFEVGETVVYPHHGAATIIEVKERVIKGETKKYLKLNVTQGDLVIEVPADNVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R ++R + T WSRR + K+ SGD+I ++EVVRDL R D Sbjct: 61 VIGKEGLDRVFDVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E A +++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTDEDRASVVLDEVLAS 160 >gi|56551117|ref|YP_161956.1| CarD family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761475|ref|ZP_04759563.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753230|ref|YP_003226123.1| CarD family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542691|gb|AAV88845.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374382|gb|EER63879.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552593|gb|ACV75539.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 184 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 130/182 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F G+++VYP HGVG + E++ QE+AG +LE +V+ F+K++M L+VP KA Sbjct: 1 MASKALSFVVGDYVVYPKHGVGRVVELQSQEIAGTRLELYVLRFEKERMTLRVPTNKAEA 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS + ++ A++ ++GK R+KRTMWSRRAQEY+ KINSGDL++IAEVVRDL R D Sbjct: 61 VGMRKLSSSATLQEAIQTLKGKPRIKRTMWSRRAQEYETKINSGDLVSIAEVVRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 QPE+SYSERQ++E A +R+ RE+ A+ + E +A++ I L + +++ ++ E + Sbjct: 121 DQPEQSYSERQIFEGAASRLARELGAMENTDEAQALDKIFDVLKAAAAEHRQAVKELAKE 180 Query: 187 AA 188 A Sbjct: 181 EA 182 >gi|310815308|ref|YP_003963272.1| transcriptional regulator, CarD family protein [Ketogulonicigenium vulgare Y25] gi|308754043|gb|ADO41972.1| transcriptional regulator, CarD family protein [Ketogulonicigenium vulgare Y25] Length = 169 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 103/166 (62%), Positives = 124/166 (74%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F ++IVYPAHGVG I I+EQEVAG KLE FVIAF+KDKM L+VP KAI+IG Sbjct: 4 SKKPEFHPNDYIVYPAHGVGQILSIEEQEVAGFKLELFVIAFEKDKMTLRVPTNKAIEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR L+ + V+ ALK ++GKA+VK+ MWSRRAQEYD KINSGDLIAIAEVVRDLHR D Q Sbjct: 64 MRALASSDVVDHALKTLKGKAKVKKAMWSRRAQEYDEKINSGDLIAIAEVVRDLHRADDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 E+SYSERQLYE AL R+ RE+AAVN E I L +++ Sbjct: 124 REQSYSERQLYERALERLTRELAAVNGKDEVSMAREIGTLLVGRAA 169 >gi|87198150|ref|YP_495407.1| CarD family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133831|gb|ABD24573.1| transcriptional regulator, CarD family [Novosphingobium aromaticivorans DSM 12444] Length = 174 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 124/174 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F G+++VYP HGVG + E++++E+AGMKL+ +V+ F+K++M L+VPV K Sbjct: 1 MAGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEA 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 IGMRKLS + AL ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 61 IGMRKLSSDKTLREALDTLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K ++ Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKILAILNEHAPKYYETA 174 >gi|282853418|ref|ZP_06262755.1| CarD-like protein [Propionibacterium acnes J139] gi|282582871|gb|EFB88251.1| CarD-like protein [Propionibacterium acnes J139] Length = 161 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 85/161 (52%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R Sbjct: 1 MTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRVLGQNDLVVRVPASNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +E +++R + + WSRR + K++SG+++ +AEVVRDL R + Sbjct: 61 DVVDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +++ A +++ L+S Sbjct: 121 LSAGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161 >gi|255325865|ref|ZP_05366957.1| transcriptional regulator, CarD family [Corynebacterium tuberculostearicum SK141] gi|311740175|ref|ZP_07714007.1| CarD family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297077|gb|EET76402.1| transcriptional regulator, CarD family [Corynebacterium tuberculostearicum SK141] gi|311304730|gb|EFQ80801.1| CarD family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 194 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 89/172 (51%), Gaps = 4/172 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 ++ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP+ A ++G+R Sbjct: 1 MEYKVGEVVVYPHHGAAVIEDIETREMGGETLEYLVLHINQSDLVVRVPIKNADNVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 S E+++ A +V E+A + E +A ++E + E+ + Sbjct: 121 SAGEKRMLGKARTILVGELALAKPVDEKKADTMMEEI----DATIERHRAAG 168 >gi|302390930|ref|YP_003826750.1| CarD family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203007|gb|ADL11685.1| transcriptional regulator, CarD family [Acetohalobium arabaticum DSM 5501] Length = 169 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 81/141 (57%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F TG+ IVYP HG GTIT+I+++EV G +++V+ +M + +P+ DIG+R++ Sbjct: 1 MFETGDKIVYPNHGAGTITDIEKKEVLGETKKYYVMQLPIGEMRVMIPMDNVDDIGIREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + V+ ++++G+ W+RR + KI SGD+ +AEVVR+L D + S Sbjct: 61 ISSDRVDDVFQILKGEKSEMSQNWNRRYRANTEKIKSGDIFEVAEVVRNLTLRDIEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAV 153 E+++ ++ ++ E+ Sbjct: 121 TGEKKMLSNSRQILISELVLA 141 >gi|326383079|ref|ZP_08204768.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395] gi|326198215|gb|EGD55400.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395] Length = 162 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 87/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R Sbjct: 1 MNFKVGDTVVYPHHGAARVEDIVIRTIKGEEIEYLVLKVADGDMTVQIPSSKLEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + Sbjct: 61 VVGQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A +V E++ ++ +A ++++ L++ S Sbjct: 121 SAGEKRMLTRARRVLVDELSLAQHTNDEKADSMLDEILAAAS 162 >gi|255262370|ref|ZP_05341712.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62] gi|255104705|gb|EET47379.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62] Length = 171 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 104/174 (59%), Positives = 128/174 (73%), Gaps = 5/174 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M+ ++KRD F + +VYPAHGVG + I+EQEVAG +LE FVIAF+KDKM L+VP Sbjct: 1 MSKKKKRD-----FEPNDFVVYPAHGVGKVVSIEEQEVAGFELELFVIAFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KAI++GMR LS V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKAIEVGMRSLSTPDVVNHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 DLHR D Q E+SYSERQLYE+AL R+ REIAA S E A I L S+++ Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREIAATGSGDEAIAAQEITDVLQSRAA 169 >gi|163746984|ref|ZP_02154341.1| transcriptional regulator, CarD family, putative [Oceanibulbus indolifex HEL-45] gi|161380098|gb|EDQ04510.1| transcriptional regulator, CarD family, putative [Oceanibulbus indolifex HEL-45] Length = 170 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 105/172 (61%), Positives = 126/172 (73%), Gaps = 5/172 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQIVSIEEQEVAGIALELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSTPDVINHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+ Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAAAKQVGDVLESR 167 >gi|254441381|ref|ZP_05054874.1| CarD-like transcriptional regulator family [Octadecabacter antarcticus 307] gi|198251459|gb|EDY75774.1| CarD-like transcriptional regulator family [Octadecabacter antarcticus 307] Length = 170 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 95/166 (57%), Positives = 119/166 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + + + +VYPAHGVG + I+ QE+AG +LE FVIAF+KDKM L+VP KA + Sbjct: 1 MAKKKYDYSPNDFVVYPAHGVGKVVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAEE 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMR L+ V +K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D Sbjct: 61 VGMRSLASTDVVADCMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 Q E+SYSERQLYE+AL R+ RE AAV + +E EA I L S+ Sbjct: 121 DQREQSYSERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSR 166 >gi|229819270|ref|YP_002880796.1| CarD family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565183|gb|ACQ79034.1| transcriptional regulator, CarD family [Beutenbergia cavernae DSM 12333] Length = 160 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EI + + G + + + + + ++VP +G+R Sbjct: 1 MTFNVGETVVYPHHGAALIEEISTRVIRGEEKLYLRLRVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ +++R + T WSRR + KI SGD+I +AEVVRDL R D Sbjct: 61 VVGKEGLDKVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E A +++ L+S Sbjct: 121 SAGEKRMLARARQILVSELALAEKTEEDRAEAILDEVLAS 160 >gi|167648071|ref|YP_001685734.1| CarD family transcriptional regulator [Caulobacter sp. K31] gi|167350501|gb|ABZ73236.1| transcriptional regulator, CarD family [Caulobacter sp. K31] Length = 170 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 97/168 (57%), Positives = 126/168 (75%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F G+H+VYPAHGVG+I ++ QEVAGM LE ++I FD +KM L+VP KA Sbjct: 1 MSKSGLEFSVGDHVVYPAHGVGSIQGVETQEVAGMSLEVYIITFDHEKMTLRVPTKKAKT 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R L+E + V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR + Sbjct: 61 AGLRPLAEGNVVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +QPE+SYSERQLYESAL+RM RE+AA+ I AI ++ +L ++ Sbjct: 121 NQPEQSYSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKTAA 168 >gi|46201683|ref|ZP_00208209.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 87/160 (54%), Positives = 118/160 (73%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+RKL Sbjct: 5 SFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRKL 64 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++S Sbjct: 65 SSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQS 124 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 YSERQ+YE+AL R+ E+AAV I A ++ L + Sbjct: 125 YSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA 164 >gi|301060351|ref|ZP_07201214.1| CarD-like protein [delta proteobacterium NaphS2] gi|300445547|gb|EFK09449.1| CarD-like protein [delta proteobacterium NaphS2] Length = 159 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 86/155 (55%), Gaps = 1/155 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPAHGVG I +I+ QE++G K +F+V+ + M + +P +G+R + Sbjct: 1 MFQVGDLAVYPAHGVGVIEKIESQEISGCKQDFYVMRILDNDMIIMIPTTNVDHVGLRDI 60 Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ + + W+RR +EY KI +G + +AEV RDL E Sbjct: 61 IPKTELPKLFSILKKRDVTLDSQTWNRRYREYMEKIKTGSVFEVAEVYRDLLILRYDKEL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S+ ER++ ++A +V+EI+ I+E + + ++ Sbjct: 121 SFGERKMLDTARTLLVKEISLAKEITESQVESDLD 155 >gi|320095399|ref|ZP_08027078.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977670|gb|EFW09334.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 171 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG TI EI + + G + + + ++ + ++VP +G+R Sbjct: 1 MSFEIGQTVVYPHHGAATIEEITTRSIRGAEKTYLKLRVNQGDLTIEVPADNVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + Sbjct: 61 IVDEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 S E+++ A + E+A I + +A ++ L+ +E Sbjct: 121 STGEKRMLTKARGILTSELALARGIDKADAAARLDGILAEGRIDEAGLDAE 171 >gi|51894260|ref|YP_076951.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857949|dbj|BAD42107.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 159 Score = 206 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 84/159 (52%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+++EV G + ++V+ M + VP G+R + Sbjct: 1 MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ L+++R + W+ R + KI SGD++A+AEVVR L + + + S Sbjct: 61 MSEQVFQQVLEVLRSRPTQAEKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 ER++ +SA ++ EI + + +A +L++ L+ Sbjct: 121 TGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ 159 >gi|163736061|ref|ZP_02143484.1| transcriptional regulator, CarD family, putative [Roseobacter litoralis Och 149] gi|161390657|gb|EDQ15003.1| transcriptional regulator, CarD family, putative [Roseobacter litoralis Och 149] Length = 170 Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 5/172 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQILSIEEQEVAGISLELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+ Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESR 167 >gi|256824253|ref|YP_003148213.1| CarD family transcriptional regulator [Kytococcus sedentarius DSM 20547] gi|256687646|gb|ACV05448.1| transcriptional regulator, CarD family [Kytococcus sedentarius DSM 20547] Length = 160 Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I E+K+++V G ++ + + + + ++VP +G+R Sbjct: 1 MTFEVGETVVYPHHGAALIEEVKQRKVKGKEMTYLKLKVAQGDLTIEVPAENCDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A +E+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + Sbjct: 61 VVDAEGLEKVFGVLRAENCEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E A ++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTDEERAEATLDEVLAS 160 >gi|260887702|ref|ZP_05898965.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] gi|260862582|gb|EEX77082.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] Length = 175 Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 77/171 (45%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M F R + G+ +VYP HG G I+ I++ EV G ++V+ M + +P Sbjct: 1 MRFAWGRAGGVVLLQVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 ++G+R + VE +++ W++R ++ SGD+ +A V R Sbjct: 61 TDNVDNMGLRDVIPETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVAR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 +L D + S ER+L + A +V E+ S S E + ++ L+ Sbjct: 121 NLVLQDRLRKISSGERRLLDLARQIIVSELVYACSKSPEEVKSWMDGILAE 171 >gi|110679120|ref|YP_682127.1| CarD family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109455236|gb|ABG31441.1| transcriptional regulator, CarD family, putative [Roseobacter denitrificans OCh 114] Length = 170 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 5/172 (2%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT +K D FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP Sbjct: 1 MTKSKKLD-----FRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVP 55 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+ Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESR 167 >gi|228993464|ref|ZP_04153374.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228999501|ref|ZP_04159079.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|229007057|ref|ZP_04164684.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228754206|gb|EEM03624.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228760212|gb|EEM09180.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|228766286|gb|EEM14930.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 85/157 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKIRQYCVIHMVISDMQVMIPMDKVENSGIRYVV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + L + W +R K+ +G+L+ AEVVRDL R + + + Sbjct: 67 DKNTLNDVLVDIHNGEADHSLSWKQRYTMNMEKMKNGNLLDGAEVVRDLIRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A ++ E+A V ++SE +A +++ ++ Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATYILQDTIN 163 >gi|227876780|ref|ZP_03994889.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243] gi|269976308|ref|ZP_06183304.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1] gi|306817728|ref|ZP_07451470.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307701599|ref|ZP_07638616.1| CarD-like protein [Mobiluncus mulieris FB024-16] gi|227842677|gb|EEJ52877.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243] gi|269935637|gb|EEZ92175.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649542|gb|EFM46825.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307613278|gb|EFN92530.1| CarD-like protein [Mobiluncus mulieris FB024-16] Length = 160 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 85/160 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EI + + G++ E+ + + + +++P +G+R Sbjct: 1 MTFTVGETVVYPHHGAAVIEEITTRVIGGVEREYLKLRVAQADLTIQIPSENVEMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E +++R + + WSRR + KI +GD++ +AEVVRDL R DS+ Sbjct: 61 VVDKEGLEHVFEVLRTTKTEEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSKKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A N ++ L+S Sbjct: 121 SAGEKRMLSKARQILVSELALAEKTNEEDASNRLDEVLAS 160 >gi|300859178|ref|YP_003784161.1| putative transcription factor [Corynebacterium pseudotuberculosis FRC41] gi|300686632|gb|ADK29554.1| putative transcription factor [Corynebacterium pseudotuberculosis FRC41] gi|302206868|gb|ADL11210.1| Transcriptional regulator [Corynebacterium pseudotuberculosis C231] gi|308277120|gb|ADO27019.1| Transcriptional regulator [Corynebacterium pseudotuberculosis I19] Length = 193 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 4/174 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVDDEGLQKVFGFLREIDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185 S E+++ A +V E+A +I E +A + L+ + E+ + D Sbjct: 121 SAGEKRMLAKARQVLVGELALAENIDENKA----DELLAQVDATVERHRAAGVD 170 >gi|117927289|ref|YP_871840.1| CarD family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647752|gb|ABK51854.1| transcriptional regulator, CarD family [Acidothermus cellulolyticus 11B] Length = 160 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 82/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R Sbjct: 1 MTFKVGETVVYPHHGAALIEAIETRVINGQEKTYLVLKVAQGDLTVRVPAENAEFVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D Sbjct: 61 VVSQDGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A +++ L S Sbjct: 121 SAGEKRMLAKARQILVSELALAEGTNEDKAEAILDEVLGS 160 >gi|298345944|ref|YP_003718631.1| putative transcription factor CarD [Mobiluncus curtisii ATCC 43063] gi|304390353|ref|ZP_07372306.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654533|ref|ZP_07907439.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|298236005|gb|ADI67137.1| possible transcription factor CarD [Mobiluncus curtisii ATCC 43063] gi|304326109|gb|EFL93354.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490997|gb|EFU80616.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 160 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 86/160 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R Sbjct: 1 MTFKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS Sbjct: 61 VVDEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A ++ L+S Sbjct: 121 SAGEKRMLTKARQILVSELALAEKTNEEDASLRLDEVLAS 160 >gi|239916921|ref|YP_002956479.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC 2665] gi|289706880|ref|ZP_06503221.1| CarD-like transcriptional regulator [Micrococcus luteus SK58] gi|239838128|gb|ACS29925.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC 2665] gi|289556430|gb|EFD49780.1| CarD-like transcriptional regulator [Micrococcus luteus SK58] Length = 160 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + + ++VP +G+R Sbjct: 1 MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A +E ++++R + + T WSRR + K+ SGD+ +AEVVRDL R D Sbjct: 61 VVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ A +V E+A ++E EA ++ L Sbjct: 121 SAGEKRMLSKARQVLVSELALAKKVTEEEAEGRLDKVLE 159 >gi|315657561|ref|ZP_07910443.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492033|gb|EFU81642.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 160 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 86/160 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R Sbjct: 1 MTFKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS Sbjct: 61 VVDEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A +E +A ++ L+S Sbjct: 121 SAGEKRMLSKARQILVSELALAEKTNEEDASLRLDEVLAS 160 >gi|114799783|ref|YP_762092.1| CarD family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739957|gb|ABI78082.1| transcriptional regulator, CarD family [Hyphomonas neptunium ATCC 15444] Length = 174 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 101/160 (63%), Positives = 126/160 (78%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 +K +A F G+ +VYPAHGVG IT I+ Q VAGM+LE +V+AFD+DKM L+VP + Sbjct: 2 AKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNR 61 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 A GMR L+ + V+ ALK + GKAR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLH Sbjct: 62 AEASGMRALAGSKLVDDALKTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLH 121 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163 R D QPE+SYSERQLYESAL+RM RE+AAV +I + +A+ Sbjct: 122 RGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAME 161 >gi|83313417|ref|YP_423681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948258|dbj|BAE53122.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 167 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 86/160 (53%), Positives = 117/160 (73%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+R L Sbjct: 8 SFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRML 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++S Sbjct: 68 SSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 YSERQ+YE+AL R+ E+AAV I A ++ L + Sbjct: 128 YSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA 167 >gi|83591305|ref|YP_431314.1| CarD family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83574219|gb|ABC20771.1| transcriptional regulator, CarD family [Moorella thermoacetica ATCC 39073] Length = 158 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 86/158 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ +G+R++ Sbjct: 1 MFKVGDKVVYPMHGAGVIEAIEEREVLGKKRKYYILRLPLGDMKVMIPLESEQAVGLREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ +K+++ W+RR + K+ SG++ +AEVV +L R + S Sbjct: 61 IDEKEIQEVIKILKEPRSNGSGNWNRRYRANLEKMRSGNIYQLAEVVGNLSRREHDQGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A ++ E+A + + + N++E L+ Sbjct: 121 TGERKMLENARQMLISELALARNAEKNQVENMLEKLLA 158 >gi|25029078|ref|NP_739132.1| putative transcription factor [Corynebacterium efficiens YS-314] gi|23494365|dbj|BAC19332.1| putative transcription factor [Corynebacterium efficiens YS-314] Length = 200 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 90/178 (50%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+ Sbjct: 1 MGMDFKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGV 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 RDVVGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDR 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 S E+++ A +V E+A ++ E +A + + + ++++K Sbjct: 121 GLSAGEKRMLAKARQVLVGELALAETVDEAKADAFLAEVDETIARHRADLLGDDEEKK 178 >gi|297627026|ref|YP_003688789.1| CarD family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922791|emb|CBL57369.1| transcriptional regulator CarD [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 161 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 1/161 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMR 70 F GE +VYP HG I + + +++ G + V+ + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPNHGAAVIEDTETRKIKGEDTLYLVLRILGQTDLVVRVPACNLDLVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +E+ ++R + T WSRR + K++SGD++ ++EVVRDL R + + Sbjct: 61 DVVDEEGLEKVFSVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVSEVVRDLWRREKERG 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + E A +++ L+S Sbjct: 121 LSAGEKRMLAKARQILVSELALAEKVEEERAEVMLDEVLAS 161 >gi|229106940|ref|ZP_04237040.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229118992|ref|ZP_04248336.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228664467|gb|EEL19964.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228676495|gb|EEL31241.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] Length = 158 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 83/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIMHIFQHGESDKLLPWKQRYKVNTDKIKTGEIQDGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE+++ ++A ++ E+ + I+E + + Sbjct: 125 NTSEKKMLDNAHEFLISELGLIKGITENQIKSF 157 >gi|212716130|ref|ZP_03324258.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM 16992] gi|212661497|gb|EEB22072.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM 16992] Length = 198 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A N + EI+ + E EA L++VNL + ++ EK +E ++A Sbjct: 121 GLSAGEKRMLTKARNILTSEISLSEKLDETEAQRLLDVNLGYEPAQPGDEKHHTEAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|114570846|ref|YP_757526.1| CarD family transcriptional regulator [Maricaulis maris MCS10] gi|114341308|gb|ABI66588.1| transcriptional regulator, CarD family [Maricaulis maris MCS10] Length = 169 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 96/166 (57%), Positives = 122/166 (73%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F+ G+ IVYPAHGVG +T +++ VAG +E +V+ F++DKM L+VP K Sbjct: 1 MTKNDKSFKKGDFIVYPAHGVGRVTGVEKDSVAGFDIEVYVVTFEQDKMTLRVPTAKTEA 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 GMR LS V+ ALK ++GKA+VKRTMWSRRAQEY+AKINSGDLI IAEVVRDLHR + Sbjct: 61 SGMRPLSSDKIVKDALKTLKGKAKVKRTMWSRRAQEYEAKINSGDLIQIAEVVRDLHRAE 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 QPE+SYSERQLYESAL+RMVRE+AAV I A ++ +L+ K Sbjct: 121 DQPEQSYSERQLYESALDRMVRELAAVEEIEHEAAREMLSTSLAKK 166 >gi|254486669|ref|ZP_05099874.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101] gi|214043538|gb|EEB84176.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101] Length = 171 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 100/164 (60%), Positives = 122/164 (74%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR E +VYPAHGVG I ++EQE+AG+ LE FVIAF+KDKM L+VP KA +IG Sbjct: 4 SKKLDFRPNEFVVYPAHGVGQIVSVEEQEIAGISLELFVIAFEKDKMTLRVPTHKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDTITHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 E+SYSERQLYE+AL R+ RE+AAV E A + L S+ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVAGGDELAAAKQVGDVLESR 167 >gi|302331432|gb|ADL21626.1| Transcriptional regulator [Corynebacterium pseudotuberculosis 1002] Length = 193 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 4/174 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVDDEGLQKVFGFLREIDVEEAGNWSRRFKANQGRLASGDVNKVAEVVRDLWRRDQGRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185 S E+++ A +V E+A +I E +A + L+ + E+ + D Sbjct: 121 SAGEKRMLAKARQVLVGELALAENIDENKA----DELLAQVDATVERHRAAGVD 170 >gi|300934651|ref|ZP_07149907.1| putative transcription factor [Corynebacterium resistens DSM 45100] Length = 199 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 80/156 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E G K+++ V+ ++ + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAVIEGIEQREFKGEKVDYLVLRINQGDLSVRVPAANAEKVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S E+++ A +V E+A + + + L+E Sbjct: 121 SAGEKRMLAKARQILVGELALAEGVDDKKTDALLEE 156 >gi|332981599|ref|YP_004463040.1| CarD family transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699277|gb|AEE96218.1| transcriptional regulator, CarD family [Mahella australiensis 50-1 BON] Length = 162 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 1/154 (0%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP HG G + I+E+E+ G+ +++++ + + +P+ A DIG+R + + Sbjct: 3 QIGDKVVYPMHGAGVVEAIEEKEILGVTQKYYILKLPVCDVKIMIPLSSADDIGIRHIID 62 Query: 75 AHFVERALKLV-RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 +R L + + T W+RR + KI SGD+ +A+VVR L + Q S Sbjct: 63 EDESKRVLAALSQNNQDGDNTNWNRRYRINMDKIKSGDIYEVADVVRSLMIREKQKGLSA 122 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 ER++ SA +V E+A NS E LIE Sbjct: 123 GERKMLNSAKQILVSELALANSTGTDEIERLIEE 156 >gi|68535372|ref|YP_250077.1| putative transcription factor [Corynebacterium jeikeium K411] gi|68262971|emb|CAI36459.1| putative transcription factor [Corynebacterium jeikeium K411] Length = 196 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 80/166 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R Sbjct: 1 MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 S E+++ A +V E+A + + + L+ ++ E Sbjct: 121 SAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAAIKRHRE 166 >gi|260578403|ref|ZP_05846317.1| transcription factor [Corynebacterium jeikeium ATCC 43734] gi|258603425|gb|EEW16688.1| transcription factor [Corynebacterium jeikeium ATCC 43734] Length = 196 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 77/154 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R Sbjct: 1 MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 S E+++ A +V E+A + + + L+ Sbjct: 121 SAGEKRMLAKARQILVGELALAEGVDDKKTDALL 154 >gi|85709786|ref|ZP_01040851.1| transcriptional regulator [Erythrobacter sp. NAP1] gi|85688496|gb|EAQ28500.1| transcriptional regulator [Erythrobacter sp. NAP1] Length = 178 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 84/178 (47%), Positives = 125/178 (70%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K Sbjct: 1 MASNAPAFTVGDYVVYPKHGVGRVIELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVES 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 IGMRKLS ++ A+ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D Sbjct: 61 IGMRKLSSDKTLKEAMDTLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L + + + +++ Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEETDEPTALEKILEVLREHAPQYYDNDDDSK 178 >gi|227502085|ref|ZP_03932134.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306836888|ref|ZP_07469843.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|227077144|gb|EEI15107.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304567229|gb|EFM42839.1| CarD family transcriptional regulator [Corynebacterium accolens ATCC 49726] Length = 194 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 4/172 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 ++ GE +VYP HG I +I+ +E+ G +LE+ V+ ++ + ++VP A ++G+R Sbjct: 1 MEYKVGEVVVYPHHGAAVIEDIETREMGGEELEYLVLHINQSDLVVRVPKKNADNVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 S E+++ A +V E+A + + +A ++E + E+ + Sbjct: 121 SAGEKRMLGKARTILVGELALAQPVDDKKADTMMEEI----DATIERHRAAG 168 >gi|86137857|ref|ZP_01056433.1| transcriptional regulator, CarD family protein [Roseobacter sp. MED193] gi|85825449|gb|EAQ45648.1| transcriptional regulator, CarD family protein [Roseobacter sp. MED193] Length = 170 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 100/164 (60%), Positives = 124/164 (75%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR E++VYPAHGVG I ++EQEVAG LE FVI F+KDKM L+VP KAI++G Sbjct: 4 SKKLAFRPDEYVVYPAHGVGQIISVEEQEVAGFALELFVITFEKDKMTLRVPTNKAIEVG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q Sbjct: 64 MRSLSSPDVIAQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 E+SYSERQLYE+AL R+ RE+AAV E A + L+S+ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVAGGDEILAAKQVGDVLTSR 167 >gi|325000162|ref|ZP_08121274.1| CarD family transcriptional regulator [Pseudonocardia sp. P1] Length = 163 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 84/163 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ + + G ++++ V+ + + +++P +G+R Sbjct: 1 MVFKVGETVVYPHHGAALIEAIETRTIKGEEVQYLVLKVQQGDLTVRIPADNVEVVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + Sbjct: 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANWEKLTSGDVNKVAEVVRDLWRREKDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S E+++ A +V E+A E A L++ L++ ++ Sbjct: 121 SAGEKRMLGKARQILVSELALAEGTDEERAEVLLDEVLATATA 163 >gi|42782726|ref|NP_979973.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987] gi|42738652|gb|AAS42581.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987] Length = 158 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E+AG K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGEKQQYYVIKMLGSNMELMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157 >gi|254461053|ref|ZP_05074469.1| transcriptional regulator, CarD family [Rhodobacterales bacterium HTCC2083] gi|206677642|gb|EDZ42129.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium HTCC2083] Length = 172 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 103/159 (64%), Positives = 120/159 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR E +VYPAHGVG + ++EQEVA +KLE +VIAF+KDKM L+VP KAIDIGMR LS Sbjct: 9 FRVNEFVVYPAHGVGKVVSVEEQEVADVKLELYVIAFEKDKMTLRVPTHKAIDIGMRSLS 68 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SY Sbjct: 69 TGDEVAHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSY 128 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SERQLYE+AL R+ REI AV E A I L S+ Sbjct: 129 SERQLYEAALERLTREIGAVQGGDEDAAARQITDVLMSR 167 >gi|329946263|ref|ZP_08293857.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527555|gb|EGF54550.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 160 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + GE +VYP HG I +I++++V G + + + + + + VP IG+R Sbjct: 1 MTYEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVDETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E EA + ++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAQKTPEDEAESRLDEVLAS 160 >gi|75760996|ref|ZP_00741000.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491513|gb|EAO54725.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 83/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R Sbjct: 14 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRP 73 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 74 VTDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTL 133 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 134 NTSEKKLLDDAYKFLVSELELIKGITENQIKSF 166 >gi|94497220|ref|ZP_01303792.1| transcriptional regulator, CarD family protein [Sphingomonas sp. SKA58] gi|94423325|gb|EAT08354.1| transcriptional regulator, CarD family protein [Sphingomonas sp. SKA58] Length = 175 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 126/174 (72%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA Sbjct: 1 MAAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEG 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 61 VGMRKLSSNKTLEEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEETDEPSALQKILRILNEAAPKYAKVE 174 >gi|288957083|ref|YP_003447424.1| transcriptional regulator [Azospirillum sp. B510] gi|288909391|dbj|BAI70880.1| transcriptional regulator [Azospirillum sp. B510] Length = 166 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 82/165 (49%), Positives = 122/165 (73%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F G+ +VYPAHGVG + I+ +AG++++ + I F+K++M LKVPV KA + G Sbjct: 2 SNKLDFDAGDFVVYPAHGVGRVEGIETHSIAGLEVQLYAITFEKERMTLKVPVTKARNAG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R+LS ++ AL+ ++G++RV+RTMWSRRAQEY+AKINSGD ++IAEVVRDL+R Q Sbjct: 62 LRRLSSKDRIKVALETLQGRSRVRRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGADQ 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++SYSERQ+Y++AL R+ RE+AAV I E +A +E LS + Sbjct: 122 SDQSYSERQIYQAALERLARELAAVEKIDETKATERLESVLSKAA 166 >gi|83955682|ref|ZP_00964262.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. NAS-14.1] gi|83839976|gb|EAP79152.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. NAS-14.1] Length = 171 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 101/164 (61%), Positives = 122/164 (74%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + FR E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP KA +IG Sbjct: 4 SKKLDFRPNEFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVPTHKATEIG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 MR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q Sbjct: 64 MRALSSPDVISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQ 123 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 E+SYSERQLYE+AL R+ RE+AAV E A + L S+ Sbjct: 124 REQSYSERQLYEAALERLTREVAAVAGGDELAASKQVGDVLESR 167 >gi|315498116|ref|YP_004086920.1| transcriptional regulator, card family [Asticcacaulis excentricus CB 48] gi|315416128|gb|ADU12769.1| transcriptional regulator, CarD family [Asticcacaulis excentricus CB 48] Length = 169 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 95/169 (56%), Positives = 126/169 (74%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 A F+TG+ +VYPAHGVGT+ ++ QEVAG +LE +V+ FD +KM L+VP KA Sbjct: 1 MTTVAAELEFKTGDKVVYPAHGVGTVAAVESQEVAGYQLEVYVVTFDHEKMTLRVPTKKA 60 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 G+R L+ A + +AL ++G+ARVKRTMWSRRAQEY+AKINSGDL++IAEVVRDLHR Sbjct: 61 KTAGLRHLAPAAVMSQALVTLKGRARVKRTMWSRRAQEYEAKINSGDLVSIAEVVRDLHR 120 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++QPE+SYSERQLYESAL+RM RE+AA+ I A+ L+ +L + Sbjct: 121 AENQPEQSYSERQLYESALDRMAREVAAIEKIDRDAAVALLNKSLIKAA 169 >gi|296118942|ref|ZP_06837515.1| transcriptional regulator, CarD family [Corynebacterium ammoniagenes DSM 20306] gi|295968040|gb|EFG81292.1| transcriptional regulator, CarD family [Corynebacterium ammoniagenes DSM 20306] Length = 195 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 85/173 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP +G+R Sbjct: 1 MEFKVGEVVVYPHHGAAKIEAIEHREMGGEMLEYLVLQINQSDLVVRVPSKNVEQVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 S E+++ A +V E+A + E +A +++ S+ E++ Sbjct: 121 SAGEKRMLAKARQILVGELALAQPVDEKKADTMMDEIESTIQRHRAAGLVEDK 173 >gi|315226414|ref|ZP_07868202.1| CarD family transcriptional regulator [Parascardovia denticolens DSM 10105] gi|315120546|gb|EFT83678.1| CarD family transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 260 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R Sbjct: 31 MEYKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADAVDKVGVR 90 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQP 129 ++ V + +++R ++T WSRR + KI +GD+ IAEVVRDL R D + Sbjct: 91 EVVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDEH 150 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A N + EIA I + EA L++VNL + + EK ++ ++A Sbjct: 151 GLSAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHHAQAPEEA 210 Query: 188 A 188 A Sbjct: 211 A 211 >gi|308274564|emb|CBX31163.1| hypothetical protein N47_E46750 [uncultured Desulfobacterium sp.] Length = 183 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 2/168 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + F G+ VYPAHGVG I I+ + V G K +F++I ++ M + +P +G+R Sbjct: 16 REFHVGDLAVYPAHGVGRIEAIENKIVNGEKHDFYIIKVLENGMVIMIPTWNVDSVGLRD 75 Query: 72 LSEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + V + ++ K + W+RR ++Y KI +G L +AEV RDL+ Sbjct: 76 VISEGEVPKIYDFMKSKKETPIDTQTWNRRYRDYMDKIKTGSLYDVAEVFRDLYLLKLTK 135 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 + S+ ER+L+++A +V+E++ + SE + + IE SK + + Sbjct: 136 DLSFGERKLFDTAQTLLVKELSTARNTSEDKIFSEIESLFISKENPKD 183 >gi|325066494|ref|ZP_08125167.1| CarD family transcriptional regulator [Actinomyces oris K20] gi|326772504|ref|ZP_08231788.1| transcriptional regulator, CarD family [Actinomyces viscosus C505] gi|326637136|gb|EGE38038.1| transcriptional regulator, CarD family [Actinomyces viscosus C505] Length = 160 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + GE +VYP HG I +I++++V G + + + + + + VP IG+R Sbjct: 1 MTYEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVDETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E EA + ++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160 >gi|172041356|ref|YP_001801070.1| putative transcription factor [Corynebacterium urealyticum DSM 7109] gi|171852660|emb|CAQ05636.1| putative transcription factor [Corynebacterium urealyticum DSM 7109] Length = 190 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 78/156 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E G +++ V+ + + ++VP A +G+R Sbjct: 1 MDFKVGDTVVYPHHGAAQIEGIEQREFKGETVDYLVLRLYQGDLSVRVPAANAEKVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD +AEVVRDL R D Sbjct: 61 VVGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLTSGDQNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S E+++ A +V E+A + + + +A ++ Sbjct: 121 SAGEKRMLAKARQILVGELALADGVDDKKADAMLAE 156 >gi|153005358|ref|YP_001379683.1| CarD family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028931|gb|ABS26699.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 1/168 (0%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + M F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ K Sbjct: 3 ATQATQMAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNK 62 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 +G+R++ V R ++R K V T W+RR +EY KI +G + IAEV+RDL Sbjct: 63 VGSVGLREIIGEKDVRRVYTILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDL 122 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + S + S+ ER++ ++A + +++E+A E + + ++ + Sbjct: 123 YLLRSDKDLSFGERKMLDTARSLLIKELAIAKECGEDDVEDDLKKIFN 170 >gi|305680364|ref|ZP_07403172.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266] gi|305659895|gb|EFM49394.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266] Length = 196 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 77/157 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + +R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 S E+++ A +V E+A E +A L+ Sbjct: 121 SAGEKRMLAKARQVLVGELALAEIKDEAKANELLAEV 157 >gi|163939058|ref|YP_001643942.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861255|gb|ABY42314.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] Length = 153 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 84/152 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ +++ + K W +R + KI +G++ AEVVRDL R + + Sbjct: 61 TDILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 TSEKKMLDNAHEFLISELGLIKGITENQIKSF 152 >gi|167629441|ref|YP_001679940.1| transcriptional regulator, card family, putative [Heliobacterium modesticaldum Ice1] gi|167592181|gb|ABZ83929.1| transcriptional regulator, card family, putative [Heliobacterium modesticaldum Ice1] Length = 158 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 85/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I ++E+EV G K ++V+ M + VP G+ +IG+R++ Sbjct: 1 MFAIGDKVVYPMHGAGVIEAVEEREVLGEKRLYYVLRLSLGDMRILVPSGQIAEIGLRQV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +A ++ + +++ + V W RR + K+ +GD+ A+AEVVR+L R + + S Sbjct: 61 IDAIEADQVMSVLQSRKSVMSNNWHRRYRANLDKMKTGDVYAVAEVVRNLIRRNQEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ E+A +V E+ + ++ L+ Sbjct: 121 TGERRMLENAKQILVSELVLAYDTPPEQIEAMLSRLLA 158 >gi|259505930|ref|ZP_05748832.1| transcription factor [Corynebacterium efficiens YS-314] gi|259166411|gb|EEW50965.1| transcription factor [Corynebacterium efficiens YS-314] Length = 198 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 89/176 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+R Sbjct: 1 MDFKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 S E+++ A +V E+A ++ E +A + + + ++++K Sbjct: 121 SAGEKRMLAKARQVLVGELALAETVDEAKADAFLAEVDETIARHRADLLGDDEEKK 176 >gi|184201518|ref|YP_001855725.1| hypothetical protein KRH_18720 [Kocuria rhizophila DC2201] gi|183581748|dbj|BAG30219.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 161 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 83/161 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TI EIK + V G + + + + + ++VP +G+R Sbjct: 1 MVFEVGETVVYPHHGAATIEEIKTRTVKGEEKMYLRLKVTQGDLMIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ + +++ + + + WSRR + K+ SGD++ +AEVVRDL R D Sbjct: 61 VVDEDGLKQVIAVLQAQDAEEASNWSRRYKANLEKLASGDVLKVAEVVRDLWRRDRGKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A + E+A I E EA ++ LS+ Sbjct: 121 SAGEKRMLTKARQILTSELALAKKIDEEEAEKRLDDILSAA 161 >gi|218898141|ref|YP_002446552.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|218543299|gb|ACK95693.1| transcriptional regulator, CarD family [Bacillus cereus G9842] Length = 153 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 83/152 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + K W +R + KI +G++ AEVVRDL R + + Sbjct: 61 TDILALKHIIHIFQHEKSCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE++L + A +V E+ + I+E + + Sbjct: 121 TSEKKLLDDAYKFLVSELELIKGITENQIKSF 152 >gi|227834038|ref|YP_002835745.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] gi|262183476|ref|ZP_06042897.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] gi|227455054|gb|ACP33807.1| putative transcription factor [Corynebacterium aurimucosum ATCC 700975] Length = 194 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 87/173 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG IT I+ +E+ G +LE+ V+ ++ + ++VP +G+R Sbjct: 1 MEFKVGEVVVYPHHGAAKITAIETREMGGEELEYLVLQINQSDLVVRVPSKNVEMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFSVLREVDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 S E+++ A +V E++ + E +A ++E ++ E++ Sbjct: 121 SAGEKRMLAKARQILVGELSLAKPVDEKKADTMMEEINATIERHRAAGLVEDK 173 >gi|229132055|ref|ZP_04260918.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|228651455|gb|EEL07427.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] Length = 158 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 84/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ +++ + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE+++ ++A ++ E+ + I+E + + Sbjct: 125 NTSEKKMLDNAHEFLISELGLIKGITENQIKSF 157 >gi|228901595|ref|ZP_04065773.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228908832|ref|ZP_04072664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228850842|gb|EEM95664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228858007|gb|EEN02489.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 83/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITENQIKSF 157 >gi|302390636|ref|YP_003826457.1| transcriptional regulator, CarD family [Thermosediminibacter oceani DSM 16646] gi|302201264|gb|ADL08834.1| transcriptional regulator, CarD family [Thermosediminibacter oceani DSM 16646] Length = 158 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 88/158 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+E+ G K +++V+ M + +P+ +IG+R++ Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEILGEKQKYYVMRMPFGNMRVMIPINSVKEIGVRQI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +++ LK++RG+ W+ R + KI SG++ +AEVVR+L + + S Sbjct: 61 VSDEEIDQVLKILRGEKSKMPANWNHRYRANMEKIKSGNIFQVAEVVRNLGLREKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER+++E+A +V EIA +I E A +IE L Sbjct: 121 AGERRMFENAKQILVSEIALSKNIDEKSAHEMIENALG 158 >gi|288556410|ref|YP_003428345.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547570|gb|ADC51453.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] Length = 158 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGKKQQYYVIKMSIGNMQVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + W +R + KI +G L AEVVRDL + + + Sbjct: 67 DIIALKNIIHIFQHGESDSLLSWKQRYKVNTDKIKTGKLQECAEVVRDLMQMKKEKTLNT 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGFIKGITENQIKSF 157 >gi|228994492|ref|ZP_04154342.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228765250|gb|EEM13954.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 167 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 81/149 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R Sbjct: 14 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRP 73 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + W +R + KI +G++ AEVVRDL R + Sbjct: 74 VTDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 133 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPE 160 + SE+++ ++A ++ E+ + I+E + Sbjct: 134 NTSEKKMLDNAHEFLISELGLIKGITENQ 162 >gi|237784959|ref|YP_002905664.1| putative transcription factor [Corynebacterium kroppenstedtii DSM 44385] gi|237757871|gb|ACR17121.1| putative transcription factor [Corynebacterium kroppenstedtii DSM 44385] Length = 196 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 85/175 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG I + +++++ G +++ V+ + + ++VP A +G+R Sbjct: 1 MEFNIGDTVVYPHHGAAVIEKKEQRQIKGETVDYLVLKVHQGDLTVRVPEKNAESVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 S E+++ A +V E+A + + +A + + + + K E++D Sbjct: 121 SAGEKRMLAKARQVLVGELALADGTDDAKADAMYQEAQEAIARHRAKLLGEDEDS 175 >gi|229162478|ref|ZP_04290439.1| Transcriptional regulator, CarD [Bacillus cereus R309803] gi|228620957|gb|EEK77822.1| Transcriptional regulator, CarD [Bacillus cereus R309803] Length = 158 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 82/151 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|320532511|ref|ZP_08033328.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171 str. F0337] gi|320135273|gb|EFW27404.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171 str. F0337] Length = 160 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + GE +VYP HG I +I++++V G + + + + + + VP IG+R Sbjct: 1 MTYEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVDETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E+++ A +V E+A E EA + ++ L+S Sbjct: 121 PAGEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160 >gi|108760890|ref|YP_630846.1| CarD family transcriptional regulator CdnL [Myxococcus xanthus DK 1622] gi|108464770|gb|ABF89955.1| transcriptional regulator, CarD family [Myxococcus xanthus DK 1622] Length = 164 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+ Sbjct: 1 MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGL 60 Query: 70 RKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+ Sbjct: 61 REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + S+ ER++ ++A + +++E++ SE E + ++ + Sbjct: 121 KDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFN 162 >gi|229015358|ref|ZP_04172376.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|228745937|gb|EEL95922.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 158 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 83/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLIRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE+++ ++A ++ E+ + I+E + + Sbjct: 125 NTSEKKMLDNAHEFLISELGLIKGITENQIKSF 157 >gi|85375450|ref|YP_459512.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84788533|gb|ABC64715.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 178 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 123/177 (69%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VP K Sbjct: 1 MAAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVES 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 IGMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D Sbjct: 61 IGMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 QPE+SYSERQ++E+A +R+ RE+AA+ E A+ I L + + + E+ Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYNNEEED 177 >gi|227505965|ref|ZP_03936014.1| CarD family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197487|gb|EEI77535.1| CarD family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 195 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 87/173 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP +G+R Sbjct: 1 MEFKVGEVVVYPHHGAARIADIEHREMGGETLEYLVLQINQSDLVVRVPSKNVELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFSVLREIDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 S E+++ A +V E+A + + E +A ++E ++ E++ Sbjct: 121 SAGEKRMLAKARQILVGELALASPVDEKKADTMLEEIDATIERHRAAGIVEDK 173 >gi|332186920|ref|ZP_08388661.1| carD-like/TRCF domain protein [Sphingomonas sp. S17] gi|332012930|gb|EGI54994.1| carD-like/TRCF domain protein [Sphingomonas sp. S17] Length = 177 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 87/169 (51%), Positives = 124/169 (73%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++VYP HGVG + E+++QE+AGM+LE +V+ F+K++M L+VP KA +GMRKLS Sbjct: 8 FDVGDYVVYPKHGVGRVIELQKQEIAGMQLELYVLRFEKERMTLRVPTNKAESVGMRKLS 67 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEVVRDL R D QPE+SY Sbjct: 68 SDKTMREAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVVRDLFRADDQPEQSY 127 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 SERQ++E+A +R+ RE+AA+ + E A I L + ++ K Sbjct: 128 SERQIFEAATSRLARELAAMEEVDEQRAQEKILEILRAAAAIYNKEKPA 176 >gi|302342168|ref|YP_003806697.1| CarD family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638781|gb|ADK84103.1| transcriptional regulator, CarD family [Desulfarculus baarsii DSM 2075] Length = 161 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 86/155 (55%), Gaps = 1/155 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ VYPAHGVG I ++E+ + G + F+++ ++ M + VP A +G+R + Sbjct: 1 MFDLGQLAVYPAHGVGRIEAVEEKTIGGAQQCFYILRILENDMIIMVPTANAGAVGLRPI 60 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + L ++R ++ W+RR ++Y +KI +G + +AEV+RDL S E Sbjct: 61 IPTEEVPQVLSILRDHDVIIENQTWNRRYRDYMSKIKTGSVYEVAEVLRDLFILKSDKEL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 S+ ER++ ++A N +V+E++ +E +E Sbjct: 121 SFGERKMLDTARNLLVKELSIAQQQTEDVVAAQVE 155 >gi|229007995|ref|ZP_04165557.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228753269|gb|EEM02745.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] Length = 167 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 81/149 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R Sbjct: 14 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRP 73 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + W +R + KI +G++ AEVVRDL R + Sbjct: 74 VTDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 133 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPE 160 + SE+++ E+A ++ E+ + I+E + Sbjct: 134 NTSEKKMLENAHEFLISELGLIKGITENQ 162 >gi|296537276|ref|ZP_06899162.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296262394|gb|EFH09133.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 74/165 (44%), Positives = 114/165 (69%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 F+ G+H+VYP HGVG + I+ VAG +L+ ++ F++++M L+VP+ KA Sbjct: 62 GNQGSEFKAGDHVVYPTHGVGQVQGIESMAVAGTELKVIIVTFEENRMTLRVPLNKAASS 121 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 G+RKL+ + A++ ++G+AR+KRTMWSRRAQEY+ KINSGD + IAEVVRDLHR Sbjct: 122 GLRKLAGGDRMGEAMETLKGRARIKRTMWSRRAQEYEQKINSGDPVQIAEVVRDLHRNAG 181 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 QP++S+SERQ+YE A++R+ E+AA++ + A+ + +L Sbjct: 182 QPDQSFSERQIYELAMDRLAAEVAAIDGTDKNGAMTKLLEHLKQG 226 >gi|206973195|ref|ZP_03234117.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|229191421|ref|ZP_04318406.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|206732079|gb|EDZ49279.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228592103|gb|EEK49937.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 81/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VIDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYRFLVSELELIKGITENQIKSF 157 >gi|294012721|ref|YP_003546181.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676051|dbj|BAI97569.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 175 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 126/174 (72%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA Sbjct: 1 MAAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEG 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 61 VGMRKLSSNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEETDEPSALKKILRILNEAAPKHAKVE 174 >gi|149185279|ref|ZP_01863596.1| transcriptional regulator [Erythrobacter sp. SD-21] gi|148831390|gb|EDL49824.1| transcriptional regulator [Erythrobacter sp. SD-21] Length = 177 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 125/176 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + F G+++VYP HGVG + E++ +E+AGM+L+ +V+ F+K++M L+VPV K Sbjct: 1 MASKADAFDVGDYVVYPKHGVGRVIELQSEEIAGMQLDLYVLRFEKERMTLRVPVNKVES 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 IGMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D Sbjct: 61 IGMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182 QPE+SYSERQ++E+A +R+ RE+AA+ E A+ I L + + ++T E Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYENTEE 176 >gi|148273673|ref|YP_001223234.1| CarD family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831603|emb|CAN02571.1| putative transcriptional regulator, CarD family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 160 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 82/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TI E+K++ + G + + + ++ + ++VP +G+R Sbjct: 1 MLFEVGETVVYPHHGAATIIEVKKRVIRGEEKLYLKLDVNQGGLQIEVPAENVDMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + Sbjct: 61 VIGREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+ + + A +V E+A E A L++ L+S Sbjct: 121 SAGEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160 >gi|114769349|ref|ZP_01446975.1| transcriptional regulator, CarD family protein [alpha proteobacterium HTCC2255] gi|114550266|gb|EAU53147.1| transcriptional regulator, CarD family protein [alpha proteobacterium HTCC2255] Length = 170 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 93/161 (57%), Positives = 122/161 (75%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR + +VYPAHGVG I ++ QE+AG ++E FVIAF+KDKM L+VP KA +GMR L+ Sbjct: 10 FRLNDFVVYPAHGVGKIMTVETQEIAGTQMELFVIAFEKDKMTLRVPTAKATAVGMRNLA 69 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 VE+A+K ++G+ARVKR MWSRRAQEY+ KINSGDL++IAEVVRDLHR D + E+SY Sbjct: 70 SEELVEKAMKTLKGRARVKRAMWSRRAQEYEQKINSGDLMSIAEVVRDLHRNDEEREQSY 129 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 SERQLYE+AL R+ RE+AAV+ E A + L +++S Sbjct: 130 SERQLYEAALERLTREVAAVDGTDEGVAAEKVTDILVARAS 170 >gi|229073467|ref|ZP_04206599.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228709655|gb|EEL61697.1| Transcriptional regulator, CarD [Bacillus cereus F65185] Length = 158 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 82/153 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYRFLVSELELIKGITENQIKSF 157 >gi|260905792|ref|ZP_05914114.1| transcriptional regulator, CarD family protein [Brevibacterium linens BL2] Length = 160 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 82/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG TI +IK++ + G + + + + ++VP +G+R Sbjct: 1 MSFEVGDTVVYPHHGAATIQDIKKRTIKGEEKLYLKLQVAHGDLVIEVPAENCDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + VE+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + Sbjct: 61 VVGEEGVEKVFNVLRAEFVEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLWRREQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E EA +++ L+S Sbjct: 121 STGEKRMLSKARQILVSELALAEKKEESEAEAILDEVLAS 160 >gi|229191260|ref|ZP_04318247.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228592177|gb|EEK50009.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 84/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISKMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157 >gi|260881580|ref|ZP_05404736.2| transcriptional regulator, CarD family [Mitsuokella multacida DSM 20544] gi|260848409|gb|EEX68416.1| transcriptional regulator, CarD family [Mitsuokella multacida DSM 20544] Length = 166 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 76/159 (47%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP HG G I+ I+ EV G ++V+ M + +P A ++G+R + Sbjct: 5 QIGDKVVYPMHGAGVISGIENCEVLGEGKSYYVLEMPLGNMKVMIPTDNADNVGLRDVIP 64 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 V+ +++ + + W++R ++ SGD+ +A V R+L D + S Sbjct: 65 QQKVDEVREVLEEEPEKPKGSWNKRFHANLDRMKSGDICDVAAVARNLILQDRRRHISSG 124 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ER+L + A +V E+ + E N + LS+ + Sbjct: 125 ERRLLDLAKQILVSELVYACDKTPKEVENWLTSVLSANA 163 >gi|227500782|ref|ZP_03930831.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098] gi|227217087|gb|EEI82445.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098] Length = 159 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 81/158 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I I+++E G + ++F++ M + +P K D+ +R + Sbjct: 1 MFKIGDKIVYPMHGAGIIDSIEKKEFLGEEKDYFILKMPIGDMDISIPTNKINDMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +R LK++ + + W+ R ++ + +GD+ IA++VR+L D S Sbjct: 61 ISKEEGDRVLKILDDEPSDMSSNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDKDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L + + E+ S+ + EA +I+ ++ Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLEKEEAEKMIDESIG 158 >gi|86157697|ref|YP_464482.1| CarD family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197122995|ref|YP_002134946.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917784|ref|YP_002493088.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774208|gb|ABC81045.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172844|gb|ACG73817.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K] gi|219955638|gb|ACL66022.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 93/169 (55%), Gaps = 1/169 (0%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + + F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ Sbjct: 2 SATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMN 61 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 K +G+R++ V R ++R K V T W+RR +EY KI +G + IAEV+RD Sbjct: 62 KVGSVGLREIIGEKDVRRVYGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRD 121 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 L+ S + S+ ER++ ++A + +++E+A + E + + ++ + Sbjct: 122 LYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQDVEDDLKKIFN 170 >gi|225351869|ref|ZP_03742892.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157116|gb|EEG70455.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 198 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EI+ + E EA L++VNL + ++ E+ +E ++A Sbjct: 121 GLSAGEKRMLTKARSILTSEISLSEHLDEAEAQRLLDVNLGYEPAQPGDEEHHTEAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|170783048|ref|YP_001711382.1| putative transcription factor regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157618|emb|CAQ02816.1| putative transcription factor regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 160 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TI E+K++ + G++ + + ++ + ++VP +G+R Sbjct: 1 MLFEVGETVVYPHHGAATIIEVKKRVIRGVEKLYLKLDVNQGGLQIEVPAENVDMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + Sbjct: 61 VIGREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+ + + A +V E+A E A L++ L+S Sbjct: 121 SAGEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160 >gi|229018847|ref|ZP_04175694.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] gi|229025088|ref|ZP_04181515.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228736198|gb|EEL86766.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228742468|gb|EEL92621.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] Length = 158 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 82/151 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPMGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 TLKALTHIIDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|229002840|ref|ZP_04160720.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|228758404|gb|EEM07571.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] Length = 158 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 81/149 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPE 160 + SE+++ E+A ++ E+ + I+E + Sbjct: 125 NTSEKKMLENAHEFLISELGLIKGITENQ 153 >gi|213965110|ref|ZP_03393308.1| transcriptional regulator, CarD family protein [Corynebacterium amycolatum SK46] gi|213952224|gb|EEB63608.1| transcriptional regulator, CarD family protein [Corynebacterium amycolatum SK46] Length = 191 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 4/177 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG I I E+E+ G +++ V+ + + ++VP A +G+R Sbjct: 1 MEFSIGDTVVYPHHGAAKIENIIERELNGETVQYLVLQILQSDLNIQVPAKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLGSGDINKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188 S E+++ A +V E+A + + E + +E + + E+ + Q+ AA Sbjct: 121 SAGEKRMLSKARQVLVGELALADGVDEAK----VEEVFARVDATIERHRALAQEGAA 173 >gi|228998394|ref|ZP_04157985.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] gi|229005881|ref|ZP_04163575.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228755345|gb|EEM04696.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4] gi|228761315|gb|EEM10270.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17] Length = 158 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALTHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITENQMKSF 157 >gi|260892305|ref|YP_003238402.1| transcriptional regulator, CarD family [Ammonifex degensii KC4] gi|260864446|gb|ACX51552.1| transcriptional regulator, CarD family [Ammonifex degensii KC4] Length = 159 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 1/159 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG G I I+E+E+ G K E++V+ F + M + VP+ +IG+R+ Sbjct: 1 MFKVGDKVVYPMHGAGIIEAIEEKEILGQKREYYVLRFPIGNNMKVMVPIDNCQEIGLRR 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + V+ LKL+R W+ R + KI SG++ A+AEVVR+L R + + Sbjct: 61 VIDKSEVQNVLKLLRSSCTAMPANWNHRYRANLEKIKSGNIYAVAEVVRNLARRERERGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S E+++ E+A ++ E+ + E EA L++ + Sbjct: 121 SSGEKRMLENAKQILISELVLAMEMKEEEARQLLDRAFA 159 >gi|163941254|ref|YP_001646138.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229012829|ref|ZP_04169997.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|229061220|ref|ZP_04198570.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|229134451|ref|ZP_04263264.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|229168365|ref|ZP_04296090.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|163863451|gb|ABY44510.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] gi|228615191|gb|EEK72291.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228649072|gb|EEL05094.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|228718091|gb|EEL69731.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228748431|gb|EEL98288.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 158 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 82/151 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK + +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKRQYYVIKMSASNMEVMIPMGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALTNIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|115378642|ref|ZP_01465793.1| transcriptional regulator, CarD family [Stigmatella aurantiaca DW4/3-1] gi|310820620|ref|YP_003952978.1| carD domain-containing protein transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364354|gb|EAU63438.1| transcriptional regulator, CarD family [Stigmatella aurantiaca DW4/3-1] gi|309393692|gb|ADO71151.1| Transcriptional regulator, CarD domain protein [Stigmatella aurantiaca DW4/3-1] Length = 165 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+ Sbjct: 1 MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGLVGL 60 Query: 70 RKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+ Sbjct: 61 REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + S+ ER++ ++A + +++E++ SE E + ++ + Sbjct: 121 KDLSFGERKMLDTARSLLIKELSLAKDCSEEEIESDLKKIFN 162 >gi|148556439|ref|YP_001264021.1| CarD family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501629|gb|ABQ69883.1| transcriptional regulator, CarD family [Sphingomonas wittichii RW1] Length = 172 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 87/168 (51%), Positives = 123/168 (73%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++ QE+AG KLE +V+ F+K++M L+VP KA Sbjct: 1 MAAKALSFVVGDYVVYPKHGVGRVVELQSQEIAGAKLELYVLRFEKERMTLRVPTNKAEA 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS + + AL ++GK ++KRTMWSRRAQEY+AKINSGDL++I+EVVRDL R D Sbjct: 61 VGMRKLSSSVTMGEALTTLKGKPKIKRTMWSRRAQEYEAKINSGDLVSISEVVRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 QPE+SYSERQ++E+A +R+ RE+AA+ ++ EP A I L ++ Sbjct: 121 DQPEQSYSERQIFEAATSRLARELAAMEAVDEPTAQEKILDILRKAAA 168 >gi|119025686|ref|YP_909531.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765270|dbj|BAF39449.1| possible transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 198 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA + E EA L++VNL + + E +E ++A Sbjct: 121 GLSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLGYEPPRPGDEDHHTEAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|311114871|ref|YP_003986092.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946365|gb|ADP39069.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 235 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 4/180 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71 G++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R Sbjct: 39 GYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 98 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 99 IVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEHG 158 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A + ++ EIA I E +A L+ VNL E+ ++ ++AA Sbjct: 159 LSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNLGYADPLPGDEQHHTQAPEEAA 218 >gi|229817858|ref|ZP_04448140.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM 20098] gi|229784758|gb|EEP20872.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM 20098] Length = 197 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ D + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAARVEAITERTVRGVTREYLELSVLSADGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA I E EA L++VNL +K EK ++ ++A Sbjct: 121 GLSAGEKRMLTKARSILTSEIALSEKIEESEAQRLLDVNLGYSPAKPGDEKHHTQEPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|254293138|ref|YP_003059161.1| CarD family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041669|gb|ACT58464.1| transcriptional regulator, CarD family [Hirschia baltica ATCC 49814] Length = 171 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 99/174 (56%), Positives = 129/174 (74%), Gaps = 3/174 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M Q +M F +HIVYPAHGVG +T ++ QEVA MKLE +V+AF++DK+ L+VP Sbjct: 1 MANQAGTGSM---FEVEQHIVYPAHGVGRVTAVEVQEVADMKLEVYVVAFEQDKLILRVP 57 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 KA GMR L+ V A+K + G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVR Sbjct: 58 TAKAKSSGMRSLASTKVVGDAIKTLGGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVR 117 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 DLHR D QP++SYSERQLYESAL+RM RE+A V +I EA+ + +L+ +++ Sbjct: 118 DLHRADDQPDQSYSERQLYESALDRMARELAVVENIEHTEAVARLSQSLAQRAA 171 >gi|19553858|ref|NP_601860.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62391499|ref|YP_226901.1| CarD-like transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21325433|dbj|BAC00055.1| Transcriptional regulators, similar to M. xanthus CarD [Corynebacterium glutamicum ATCC 13032] gi|41326841|emb|CAF20685.1| CarD-like transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 198 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 87/176 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 S E+++ A +V E+A ++ + +A + + + + ++K Sbjct: 121 SAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDETIARHRADLLGDEEEKK 176 >gi|307294532|ref|ZP_07574374.1| transcriptional regulator, CarD family [Sphingobium chlorophenolicum L-1] gi|306879006|gb|EFN10224.1| transcriptional regulator, CarD family [Sphingobium chlorophenolicum L-1] Length = 175 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 126/174 (72%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA Sbjct: 1 MAAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEG 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 61 VGMRKLSSNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEETDEPSALKKILRILNEAAPKHVKVE 174 >gi|116751073|ref|YP_847760.1| CarD family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700137|gb|ABK19325.1| transcriptional regulator, CarD family [Syntrophobacter fumaroxidans MPOB] Length = 159 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 1/158 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPAHGVG I ++ + + G K +F+++ + M + +PV A +G+R L Sbjct: 1 MFKIGDLAVYPAHGVGKIESVETKSIGGKKQDFYIMRILDNDMKIMIPVPNAHTVGLRGL 60 Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ + V W+RR +EY KI +G + +AEV+RDL E Sbjct: 61 IGLEDISKVYDILQKREVSVNGGTWNRRYREYMEKIKTGSIYELAEVLRDLTVLKGDKEL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S+ ER++ ++A +++E++ V ISE E I L Sbjct: 121 SFGERKMLDTARTLLLKELSIVQDISEEEVDKGIRDML 158 >gi|154487498|ref|ZP_02028905.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis L2-32] gi|154084016|gb|EDN83061.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis L2-32] Length = 198 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA + E EA L++VNL ++ + E +E ++A Sbjct: 121 GLSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLGYEAPRPGDEDHHTEAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|296128524|ref|YP_003635774.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM 20109] gi|296020339|gb|ADG73575.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM 20109] Length = 160 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 81/160 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I EIK + + G + + + + ++VP +G+R Sbjct: 1 MTFTVGETVVYPHHGAAKIEEIKSRTIRGEEKIYLKLKVAHGDLTIEVPAENVDLVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ Sbjct: 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLSRRDADRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A E +A +++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEKTEEEKAEAILDEVLAS 160 >gi|75758584|ref|ZP_00738703.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493930|gb|EAO57027.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 81/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R Sbjct: 14 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRP 73 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ + + + K W +R + K+ +G++ AEVVRDL R + Sbjct: 74 VIDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKAL 133 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 134 NTSEKKLLDDAYRFLVSELELIKGITENQIKSF 166 >gi|103485742|ref|YP_615303.1| CarD family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975819|gb|ABF51970.1| transcriptional regulator, CarD family [Sphingopyxis alaskensis RB2256] Length = 175 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 86/168 (51%), Positives = 120/168 (71%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A F G+++VYP HGVG + E+++ E+AGM+LE +V+ F+K+KM L+VP KA Sbjct: 1 MSASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEG 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +GMRKLS ++ AL+++ K +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D Sbjct: 61 VGMRKLSSDKTLKEALQVLTTKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 QPE+SYSERQ++E+A +R+ RE+AA+ E A I L+ + Sbjct: 121 DQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKILQILNEHAP 168 >gi|315605258|ref|ZP_07880304.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313075|gb|EFU61146.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 172 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 84/166 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R Sbjct: 1 MSFEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + Sbjct: 61 IVDEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 S E+++ A + + E+A +I + A ++ L+ + E Sbjct: 121 STGEKRMLTKARSILTSELALARNIEKTAAAERLDSVLAEGRIEIE 166 >gi|171743211|ref|ZP_02919018.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC 27678] gi|283455808|ref|YP_003360372.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1] gi|306823056|ref|ZP_07456432.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801155|ref|ZP_07695284.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022] gi|171278825|gb|EDT46486.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC 27678] gi|283102442|gb|ADB09548.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1] gi|304553688|gb|EFM41599.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308222044|gb|EFO78327.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022] Length = 198 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EI+ + E EA L++VNL ++ + ++ +E +A Sbjct: 121 GLSAGEKRMLTKARSILTSEISLSEHLEEGEAQRLLDVNLGYEAPQPGDDQHHTEAPQEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|228924323|ref|ZP_04087573.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835349|gb|EEM80740.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 158 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 83/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++FVI KM + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISKMQVMIPTGKIVNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYRFLVSELELIKGITENQIKSF 157 >gi|229031301|ref|ZP_04187307.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228730059|gb|EEL81033.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] Length = 158 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILNIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157 >gi|228905766|ref|ZP_04069681.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228853883|gb|EEM98626.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 81/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ + + + K W +R + K+ +G++ AEVVRDL R + Sbjct: 65 VIDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYRFLVSELELIKGITENQIKSF 157 >gi|228905590|ref|ZP_04069538.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228854065|gb|EEM98775.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 82/153 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSIRNMQVMIPTGKILSSSIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHGESDRLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + S++++ ++A ++ E+ + I+E + + Sbjct: 125 NTSDKKMLDNAHEFLISELGLIKGITENQIKSF 157 >gi|47565141|ref|ZP_00236184.1| CarD-like transcriptional regulator [Bacillus cereus G9241] gi|47557927|gb|EAL16252.1| CarD-like transcriptional regulator [Bacillus cereus G9241] Length = 162 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 83/161 (51%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+ Sbjct: 1 MDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGI 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + ++ L + W +R K+ +G+L AEVVRDL R + + Sbjct: 61 RYIVDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKER 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 121 ALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 161 >gi|23465567|ref|NP_696170.1| transcriptional regulator [Bifidobacterium longum NCC2705] gi|23326233|gb|AAN24806.1| possible transcriptional regulator [Bifidobacterium longum NCC2705] Length = 197 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + ++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVSASEVAKVFDILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + EIA I E EA L++VNL + ++ +K + ++A Sbjct: 121 GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|229174309|ref|ZP_04301842.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228609166|gb|EEK66455.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 158 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 79/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+ G K +++VI M + +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEITGEKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITAIAHILDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157 >gi|228992334|ref|ZP_04152265.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] gi|228767359|gb|EEM15991.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442] Length = 158 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + R + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALTRIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITENQMKSF 157 >gi|300780458|ref|ZP_07090314.1| CarD family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534568|gb|EFK55627.1| CarD family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 197 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 81/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I +I+++E+ G L+F V+ + + ++VPV A +G+R Sbjct: 1 MDFKVGEVVVYPHHGAARIADIEQREMGGETLDFLVLNILQSDLSVRVPVKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVNEDGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 S E+++ A +V E+A I E +A ++ Sbjct: 121 SAGEKRMLGKARQILVGELALAEPIDEAKADDM 153 >gi|256397245|ref|YP_003118809.1| CarD family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363471|gb|ACU76968.1| transcriptional regulator, CarD family [Catenulispora acidiphila DSM 44928] Length = 160 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 87/160 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I +I+ + + G E+ V+ + + ++VP KA +G+R Sbjct: 1 MTFKVGETVVYPHHGAALIEDIEIRVIKGEPKEYLVLKVAQGDLTVRVPSEKAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +ER ++R + T WSRR + KI SGD+I +AEVVRDL R D Sbjct: 61 VVDQGGLERVFDVLRAPHTEEPTNWSRRYKANIEKIQSGDVIKVAEVVRDLWRRDRDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A + +E +A +++ L+S Sbjct: 121 SAGEKRMLAKARQILVSELALAEATNEDKADAILDEVLAS 160 >gi|16077580|ref|NP_388394.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|81345932|sp|P96659|YDEB_BACSU RecName: Full=Uncharacterized protein ydeB gi|1881322|dbj|BAA19349.1| ydeB [Bacillus subtilis] gi|2632813|emb|CAB12320.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 153 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 79/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 61 TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 ASEKKMLDNAYEFLISELEVIKGITEKQIKSF 152 >gi|228966014|ref|ZP_04127081.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228793684|gb|EEM41220.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] Length = 158 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 82/153 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDVYKFLVSELELIKGITENQIKSF 157 >gi|229191731|ref|ZP_04318708.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228591725|gb|EEK49567.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] Length = 158 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPTGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|332970720|gb|EGK09700.1| CarD family transcriptional regulator [Desmospora sp. 8437] Length = 168 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 1/168 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+E+ G ++V+ M + +P+ K IG+R++ Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEILGESQRYYVMRMPVGDMKVMIPMSKVDSIGLREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + ++ + + + W+RR + K+ SGD+ +A+VVR L D + S Sbjct: 61 VDEKTISEVIERLANGSAEVSSNWNRRYRANLDKMKSGDIHDLADVVRCLMLRDKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV-NLSSKSSKTEKS 179 ER++ ++A ++ E+ + E +A L++ LS + E++ Sbjct: 121 TGERKMLDNARQILISELVLAKEMEESQAFGLLDEIILSESKPRVERA 168 >gi|89096669|ref|ZP_01169561.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL B-14911] gi|89088684|gb|EAR67793.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL B-14911] Length = 160 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 83/158 (52%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R F+ +++VYP HGVG I I+E+EV G K +++VI M + +P GK ++ Sbjct: 2 RYGGDYLFQIDDNVVYPMHGVGIIKAIEEKEVLGEKQQYYVIKMLVGNMEVMIPAGKIVN 61 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R +++ +++ + + + + W +R + KI +G + EVVRDL R Sbjct: 62 SGIRPVTDIIALKQLMNIFQNGETDRLLPWKQRFKVNTDKIKTGKIQECTEVVRDLMRMK 121 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + + SERQ+ +A ++ E+ + I+E + + Sbjct: 122 KEKALNTSERQMLNNAHEILISELGLMKGITENQIKSF 159 >gi|218781211|ref|YP_002432529.1| CarD family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762595|gb|ACL05061.1| transcriptional regulator, CarD family [Desulfatibacillum alkenivorans AK-01] Length = 177 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 1/169 (0%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + + F + VYPAHGVG I ++ + + G K F+++ ++ M + +P Sbjct: 9 SNQDASEEYTFSVNDLAVYPAHGVGRIEAVETRTIGGEKQSFYIMRILENDMVIMIPTQN 68 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 +G+R++ V + ++ K W+RR ++Y KI +G L +A V RDL Sbjct: 69 VESVGLREVIRKGDVSQVYAILGEKEIPPDNQTWNRRYRDYMEKIKTGSLFEVAGVFRDL 128 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + S+ ER+L ++A +++E++ S +E ++ IE L S Sbjct: 129 YLLKVTKDLSFGERKLLDTAQTLLLKELSIAKSCTEEVIMSEIESLLES 177 >gi|148262071|ref|YP_001236198.1| CarD family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405583|ref|YP_004285665.1| CarD family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403752|gb|ABQ32279.1| transcriptional regulator, CarD family [Acidiphilium cryptum JF-5] gi|325052445|dbj|BAJ82783.1| CarD family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 266 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 85/165 (51%), Positives = 116/165 (70%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 Q+ A + F+ G+H+VYP HGVG + I +E+AG KLE I FD+++M L+VPV KA Sbjct: 99 QRAIAKAETFKPGDHVVYPTHGVGKVERIAAEEIAGQKLELIHITFDENRMTLRVPVNKA 158 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 G+RKLS + L ++G+ARVKRTMWSRRAQEY+AKINSGD +AIAEVVRDLHR Sbjct: 159 RTAGLRKLSSRKQFDEVLATLKGRARVKRTMWSRRAQEYEAKINSGDPMAIAEVVRDLHR 218 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 QP++S+SERQ++E AL+R+ E A+ + + AI+ + L Sbjct: 219 NAGQPDQSFSERQIFEQALDRLAAEYGALEGLDKQGAIDKLLDFL 263 >gi|145296658|ref|YP_001139479.1| hypothetical protein cgR_2565 [Corynebacterium glutamicum R] gi|140846578|dbj|BAF55577.1| hypothetical protein [Corynebacterium glutamicum R] Length = 198 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 87/176 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 S E+++ A +V E+A ++ + +A + + + + ++K Sbjct: 121 SAGEKRMLSKARQVLVGELALAETVDDVKADAFLSQVDETIARHRADLLGDEEEKK 176 >gi|228922354|ref|ZP_04085661.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837409|gb|EEM82743.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 158 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|324327548|gb|ADY22808.1| transcriptional regulator, CarD family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 158 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 82/151 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP HG G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|324328612|gb|ADY23872.1| transcriptional regulator, CarD family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 159 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 82/158 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 121 ASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 158 >gi|229080349|ref|ZP_04212874.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228703018|gb|EEL55479.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] Length = 156 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 80/155 (51%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + + Sbjct: 1 MGYMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNI 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + + R + + + + W +R + KI +G++ AEV+RDL R + Sbjct: 61 RPVIDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 121 ALNTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 155 >gi|52142365|ref|YP_084467.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|51975834|gb|AAU17384.1| possible transcriptional regulator, CarD family [Bacillus cereus E33L] Length = 158 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 79/153 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + ++ + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VIDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITENQIKSF 157 >gi|319442432|ref|ZP_07991588.1| putative transcription factor [Corynebacterium variabile DSM 44702] Length = 194 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 78/154 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG + I+++E G +++ V+ + + +KVP A +G+R Sbjct: 1 MEFNIGDVVVYPHHGAAEVKGIEQREFKGQSVDYLVLRILQGDLLVKVPAANAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +++ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNRVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 S E+++ A +V E+A + + ++ +I Sbjct: 121 SAGEKRMLAKARQVLVGELALAEGVDDKKSDEVI 154 >gi|229175432|ref|ZP_04302945.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228608040|gb|EEK65349.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 164 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQIMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDGILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163 >gi|294786789|ref|ZP_06752043.1| transcriptional regulator, CarD family [Parascardovia denticolens F0305] gi|294485622|gb|EFG33256.1| transcriptional regulator, CarD family [Parascardovia denticolens F0305] Length = 230 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R Sbjct: 1 MEYKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADAVDKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQP 129 ++ V + +++R ++T WSRR + KI +GD+ IAEVVRDL R D + Sbjct: 61 EVVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A N + EIA I + EA L++VNL + + EK ++ ++A Sbjct: 121 GLSAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHHAQAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|317481883|ref|ZP_07940910.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916674|gb|EFV38069.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 197 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 5/182 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + ++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT---EKSTSENQDK 186 S E+++ A + EIA I E EA L++VNL + ++ + T+E +D Sbjct: 121 GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEDA 180 Query: 187 AA 188 AA Sbjct: 181 AA 182 >gi|158522831|ref|YP_001530701.1| CarD family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511657|gb|ABW68624.1| transcriptional regulator, CarD family [Desulfococcus oleovorans Hxd3] Length = 188 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+ +VYPAHGVG I I+ + + + +F+++ + M + +P +G+R + Sbjct: 20 YQPGDLVVYPAHGVGRIETIESRNIGDTRQDFYIMKILETNMVIMIPTQNLTAVGIRNVI 79 Query: 74 EAHFVERALKLVRGKARV---KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 V + ++R + W+RR +EY KI +G L +AEV RDL + Sbjct: 80 CKKEVSKIYNIIRSQEECGAGDNQTWNRRYKEYMDKIKTGSLYEVAEVFRDLFLLKMTKD 139 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S+ ER+L ++A +V+E++ E I+ IE Sbjct: 140 LSFGERKLLDTAQGLLVKELSIAKGAEEKTVISEIESFFPKMPP 183 >gi|154508491|ref|ZP_02044133.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC 17982] gi|293194140|ref|ZP_06609941.1| transcriptional regulator, CarD family [Actinomyces odontolyticus F0309] gi|153798125|gb|EDN80545.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC 17982] gi|292819782|gb|EFF78793.1| transcriptional regulator, CarD family [Actinomyces odontolyticus F0309] Length = 172 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 85/172 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R Sbjct: 1 MSFEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + Sbjct: 61 IVDEDGLEEVLSVLRAPYIEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 S E+++ A + E+A +I + A ++ L+ + E+ E Sbjct: 121 STGEKRMLTKARGILTSELALARNIEKSAAAERLDAVLAEGRIEVEEDAVEE 172 >gi|325478954|gb|EGC82056.1| CarD-like protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 159 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 78/158 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K D+ +R + Sbjct: 1 MFKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINDMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ LK++ W+ R ++ + +GD+ IA +VR+L D S Sbjct: 61 ITKEEGDKVLKILDEDPSDMSENWTTRYRQNQEILKTGDVYEIARMVRNLAILDKDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L + + E+ S+ + EA +I+ ++ Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLDKEEAEAMIDESIG 158 >gi|46190223|ref|ZP_00121736.2| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bifidobacterium longum DJO10A] gi|189439614|ref|YP_001954695.1| transcriptional_regulator [Bifidobacterium longum DJO10A] gi|213692627|ref|YP_002323213.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546164|ref|ZP_03976213.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133013|ref|YP_004000352.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322688825|ref|YP_004208559.1| transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690813|ref|YP_004220383.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189428049|gb|ACD98197.1| Transcriptional_regulator [Bifidobacterium longum DJO10A] gi|213524088|gb|ACJ52835.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227213145|gb|EEI81017.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517113|emb|CBK70729.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. longum F8] gi|311774000|gb|ADQ03488.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320455669|dbj|BAJ66291.1| putative transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320458778|dbj|BAJ69399.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460161|dbj|BAJ70781.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] Length = 197 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + ++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + EIA I E EA L++VNL + ++ +K + ++A Sbjct: 121 GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|257065690|ref|YP_003151946.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM 20548] gi|256797570|gb|ACV28225.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM 20548] Length = 159 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 79/158 (50%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K ++ +R + Sbjct: 1 MFKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINEMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + LK++ W+ R ++ + +GD+ IA++VR+L D+ S Sbjct: 61 ITKEEGDEVLKILDDDPSDMSNNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDNDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L + + E+ S+ + EA +I+ ++ Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLKKEEAEAMIDESIG 158 >gi|296453869|ref|YP_003661012.1| CarD family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183300|gb|ADH00182.1| transcriptional regulator, CarD family [Bifidobacterium longum subsp. longum JDM301] Length = 197 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNARKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + ++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + EIA I E EA L++VNL + ++ +K + ++A Sbjct: 121 GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|229158326|ref|ZP_04286393.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|228625284|gb|EEK82044.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] Length = 164 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 163 >gi|75761918|ref|ZP_00741841.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490589|gb|EAO53882.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++ Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 76 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 136 SEKKMLDNAYEFLISELGLIEGITENQIKSF 166 >gi|42783903|ref|NP_981150.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987] gi|206977288|ref|ZP_03238185.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217962204|ref|YP_002340774.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|228987970|ref|ZP_04148076.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141451|ref|ZP_04269988.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|42739833|gb|AAS43758.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987] gi|206744439|gb|EDZ55849.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217066173|gb|ACJ80423.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|228642014|gb|EEK98308.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|228771774|gb|EEM20234.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 164 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163 >gi|228909469|ref|ZP_04073294.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228850246|gb|EEM95075.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|228943459|ref|ZP_04105903.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976286|ref|ZP_04136757.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783390|gb|EEM31498.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816239|gb|EEM62420.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 84/153 (54%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISKMQVMIPKGKILNSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ ++ + + + + K W +R + KI +G++ AEVVRDL R + Sbjct: 65 VTDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A ++ E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLISELELIKGITENQIKSF 157 >gi|30021746|ref|NP_833377.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969394|ref|ZP_03230349.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|218230882|ref|YP_002368460.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228953921|ref|ZP_04115959.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959831|ref|ZP_04121505.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047328|ref|ZP_04192927.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|229071154|ref|ZP_04204380.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|229080862|ref|ZP_04213379.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|229111070|ref|ZP_04240629.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|229128920|ref|ZP_04257896.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|229146213|ref|ZP_04274588.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|229151843|ref|ZP_04280042.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|229179932|ref|ZP_04307278.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|296504148|ref|YP_003665848.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171] gi|29897301|gb|AAP10578.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|206736435|gb|EDZ53593.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|218158839|gb|ACK58831.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228603613|gb|EEK61088.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|228631656|gb|EEK88286.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|228637272|gb|EEK93727.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|228654625|gb|EEL10487.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|228672433|gb|EEL27718.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|228702440|gb|EEL54909.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228712094|gb|EEL64043.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228724070|gb|EEL75416.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|228799825|gb|EEM46768.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805741|gb|EEM52322.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|296325200|gb|ADH08128.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|221308340|ref|ZP_03590187.1| hypothetical protein Bsubs1_02893 [Bacillus subtilis subsp. subtilis str. 168] gi|221312662|ref|ZP_03594467.1| hypothetical protein BsubsN3_02869 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317585|ref|ZP_03598879.1| hypothetical protein BsubsJ_02828 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321861|ref|ZP_03603155.1| hypothetical protein BsubsS_02899 [Bacillus subtilis subsp. subtilis str. SMY] gi|291482932|dbj|BAI84007.1| hypothetical protein BSNT_00885 [Bacillus subtilis subsp. natto BEST195] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 79/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R + Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPV 65 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 66 TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 126 ASEKKMLDNAYEFLISELEVIKGITEKQIKSF 157 >gi|212696984|ref|ZP_03305112.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM 7454] gi|212676072|gb|EEB35679.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM 7454] Length = 159 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 75/158 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 1 MFKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E+ L ++ K W+ R +E + +GD+ IA +VRDL D S Sbjct: 61 ISKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L A M E+ S+ + +A +I+ ++ Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDQAEKMIDESIG 158 >gi|270284727|ref|ZP_05966557.2| transcriptional regulator [Bifidobacterium gallicum DSM 20093] gi|270276297|gb|EFA22151.1| transcriptional regulator [Bifidobacterium gallicum DSM 20093] Length = 198 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +AH V + +++R K WSRR + K+ +GD+ IAEVVRDL + D + Sbjct: 61 DIVDAHEVAKVFEILRTPIIEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA + E EA L++VNL ++ S D+A Sbjct: 121 GLSAGEKRMLTKARSVLTSEIALSEKLEETEAQRLLDVNLGYSEPLPGDDRHHSFAPDEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|45656119|ref|YP_000205.1| CarD transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599352|gb|AAS68842.1| transcriptional regulator (CarD family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 197 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++VYP HGVG I EI ++ + G K + +V+ KM + +PV KA + +R + + Sbjct: 29 KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIID 88 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +++ + L++ W R Q KI SG + + EV R+L R S E S Sbjct: 89 KKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIM 148 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 ER+LYESA N + E+A +++ EA NL+ L+S S +EK E Sbjct: 149 ERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEEE 197 >gi|326941362|gb|AEA17258.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 153 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 81/152 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R + Sbjct: 1 MFQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 61 TDITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 ASEKKMLDNAYEFLISELGLIEGITENQIKSF 152 >gi|229077167|ref|ZP_04209871.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229100763|ref|ZP_04231596.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228682650|gb|EEL36695.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228706186|gb|EEL58471.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] Length = 158 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 79/153 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + +++ + + W +R + KI +G++ AEV+RDL R + Sbjct: 65 VIDILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQEGAEVIRDLIRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157 >gi|229173800|ref|ZP_04301340.1| Transcriptional regulator, CarD [Bacillus cereus MM3] gi|228609650|gb|EEK66932.1| Transcriptional regulator, CarD [Bacillus cereus MM3] Length = 156 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 80/155 (51%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + + Sbjct: 1 MGYMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNI 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + + R + + + + W +R + KI +G++ AEV+RDL R + Sbjct: 61 RPVIDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 121 ALNTSEKKLLDDAYKFLVSELELIKGITEKQMKSF 155 >gi|325845929|ref|ZP_08169127.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481835|gb|EGC84867.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 159 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 75/158 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 1 MFKIGDKIVYPMHGAGVIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E+ L ++ K W+ R +E + +GD+ IA +VRDL D S Sbjct: 61 ISKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L A M E+ S+ + +A +I+ ++ Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDQAEKMIDESIG 158 >gi|228940730|ref|ZP_04103293.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973650|ref|ZP_04134232.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980206|ref|ZP_04140520.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228779564|gb|EEM27817.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228786111|gb|EEM34108.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818974|gb|EEM65036.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 158 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|126650362|ref|ZP_01722590.1| transcriptional regulator, CarD family protein [Bacillus sp. B14905] gi|126593012|gb|EAZ86994.1| transcriptional regulator, CarD family protein [Bacillus sp. B14905] Length = 158 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G++IVYP HGVG I I+E+E++G K +++VI M + +P GK + +R ++ Sbjct: 7 FEIGDNIVYPMHGVGIIKAIEEKEISGEKQQYYVIKMLIGNMQIMIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KIN+G + EVVRDL R + + Sbjct: 67 DIIALKHIINIFQHGESDRLLPWKQRYKVNTDKINTGKIQECTEVVRDLIRMKKEQGLNS 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+ + + Sbjct: 127 SEKKMLDNAHEFLISELVLIKGITVNQIKSF 157 >gi|227495622|ref|ZP_03925938.1| possible transcription factor CarD [Actinomyces coleocanis DSM 15436] gi|226830854|gb|EEH63237.1| possible transcription factor CarD [Actinomyces coleocanis DSM 15436] Length = 169 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE IVYP HG TI EI +E G K + + + + ++VP +G R Sbjct: 1 MTFHIGETIVYPHHGAATIEEINVREFKGEKRTYLTLRVAQGDLTIQVPADNVEMVGGRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + + ++ + + +WSRR ++ KI SG + ++AEVVRDL R D+ Sbjct: 61 VVDEGGFQEVVDILHEDSTDEPAIWSRRYKQNQEKIASGSIRSVAEVVRDLTRRDAVKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S E+ + A + E+A I E A ++ L + Sbjct: 121 SAGEKCMLSKARQILTSEVALARGIDEAAAHICLDEILEEVAG 163 >gi|83942849|ref|ZP_00955310.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. EE-36] gi|83846942|gb|EAP84818.1| transcriptional regulator, CarD family protein [Sulfitobacter sp. EE-36] Length = 160 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 99/156 (63%), Positives = 118/156 (75%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP KA +IGMR LS Sbjct: 1 NEFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVPTHKATEIGMRALSSPD 60 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SYSER Sbjct: 61 VISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSER 120 Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 QLYE+AL R+ RE+AAV E A + L S+ Sbjct: 121 QLYEAALERLTREVAAVAGGDELAASKQVGDVLESR 156 >gi|299144435|ref|ZP_07037515.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518920|gb|EFI42659.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 161 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 1/156 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+++E+ G +++++ + M + VPV A ++G+R++ Sbjct: 1 MFDIGDKVVYPMHGAGVIVAIEDREILGEIRKYYILKMPINDMKVMVPVENADEVGVREI 60 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + L+++ + W+RR + +I SG++ IA+VVR L R DS+ Sbjct: 61 LDEDKMNLVLEVLSCNEITNMPKNWNRRYRFNMDRIKSGNIEEIAKVVRCLERLDSKKSL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S ER++ A +V E+ V + S E L++ Sbjct: 121 STGERKMLNGAKQIIVSEMVLVYNKSVEEITELVDK 156 >gi|224282833|ref|ZP_03646155.1| transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|310287288|ref|YP_003938546.1| transcriptional regulator, CarD family [Bifidobacterium bifidum S17] gi|311064136|ref|YP_003970861.1| transcriptional regulator CarD [Bifidobacterium bifidum PRL2010] gi|313139992|ref|ZP_07802185.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251224|gb|ADO52972.1| transcriptional regulator, CarD family [Bifidobacterium bifidum S17] gi|310866455|gb|ADP35824.1| CarD transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313132502|gb|EFR50119.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 198 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + I E+ V G+K E+ + + + VPV A +G+R Sbjct: 1 MGYKVGDMVVYPRHGAARVEAITERVVKGVKREYLQLTVLSSDGLVINVPVENAQKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + +A+ V + +++R K WSRR + K+ +GD+ IAEVVRDL + D + Sbjct: 61 DIVDANEVAKVFEILRTPIVEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA + E E L++VNL K EK SE + Sbjct: 121 GLSAGEKRMLTRARSILTSEIALSEDLDEAEIQRLLDVNLGFSEPKPGDEKHHSEAPAEP 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|301056223|ref|YP_003794434.1| CarD-like transcriptional regulator [Bacillus anthracis CI] gi|300378392|gb|ADK07296.1| CarD-like transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 159 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 82/158 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 121 ASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 158 >gi|321314162|ref|YP_004206449.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|320020436|gb|ADV95422.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 158 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 79/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R + Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPV 65 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 66 TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 126 ASEKKMLDNAYEFLISELEVIKGITEKQIKSF 157 >gi|218898740|ref|YP_002447151.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228902146|ref|ZP_04066310.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228966545|ref|ZP_04127598.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|218545939|gb|ACK98333.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228793267|gb|EEM40817.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228857572|gb|EEN02068.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 158 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157 >gi|227547934|ref|ZP_03977983.1| CarD family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079945|gb|EEI17908.1| CarD family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 204 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ GE +VYP HG I +I+E+E+ G L+F V+ + + ++VPV + +G+R Sbjct: 1 MEFKVGEVVVYPHHGAARIADIEEREMGGETLDFLVLKILQSDLEVRVPVKNSELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVNEAGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 S E+++ A +V E+A + E +A + Sbjct: 121 SAGEKRMLGKARQILVGELALATPVDEAKAEEM 153 >gi|330838625|ref|YP_004413205.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] gi|329746389|gb|AEB99745.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC 35185] Length = 163 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP HG G I+ I++ EV G ++V+ M + +P ++G+R + Sbjct: 3 QVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIPTDNVDNMGLRDVIP 62 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 VE +++ W++R ++ SGD+ +A V R+L D + S Sbjct: 63 ETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVARNLVLQDRLRKISSG 122 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 ER+L + A +V E+ S S E + ++ L+ Sbjct: 123 ERRLLDLARQIIVSELVYACSKSPEEVKSWMDGILAE 159 >gi|118478884|ref|YP_896035.1| CarD family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418109|gb|ABK86528.1| transcriptional regulator, CarD family [Bacillus thuringiensis str. Al Hakam] Length = 167 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 75 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 76 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 136 SEKKMLDNAHEFLISELGLIEGITENQIKSF 166 >gi|49481535|ref|YP_038761.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479850|ref|YP_897001.1| CarD family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196032819|ref|ZP_03100232.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196040853|ref|ZP_03108151.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|196043838|ref|ZP_03111075.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|218905945|ref|YP_002453779.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225866704|ref|YP_002752082.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|228929769|ref|ZP_04092786.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936026|ref|ZP_04098836.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948465|ref|ZP_04110747.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093818|ref|ZP_04224917.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|229124284|ref|ZP_04253475.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|229186972|ref|ZP_04314126.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|49333091|gb|AAT63737.1| transcriptional regulator, CarD family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118419075|gb|ABK87494.1| transcriptional regulator, CarD family [Bacillus thuringiensis str. Al Hakam] gi|195994248|gb|EDX58203.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196025174|gb|EDX63844.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|196028307|gb|EDX66916.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|218538565|gb|ACK90963.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225788519|gb|ACO28736.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|228596526|gb|EEK54192.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|228659185|gb|EEL14834.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|228689703|gb|EEL43511.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|228811224|gb|EEM57563.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823794|gb|EEM69616.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829948|gb|EEM75568.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 164 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 163 >gi|15603905|ref|NP_220420.1| hypothetical protein RP026 [Rickettsia prowazekii str. Madrid E] gi|3860596|emb|CAA14497.1| unknown [Rickettsia prowazekii] Length = 201 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 77/172 (44%), Positives = 114/172 (66%), Gaps = 1/172 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP Sbjct: 28 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 87 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 88 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 147 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 148 DLHKN-VDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 198 >gi|284043149|ref|YP_003393489.1| transcriptional regulator, CarD family [Conexibacter woesei DSM 14684] gi|283947370|gb|ADB50114.1| transcriptional regulator, CarD family [Conexibacter woesei DSM 14684] Length = 171 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 85/163 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+++VYP HG G + + +++E+ G E+ I + M + VP A G+R+ Sbjct: 1 MEFEIGDNVVYPHHGAGKVLKKEDKEILGETREYLTIKILHNDMTVMVPTANAAVAGLRR 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + V++ L +++ + W+RR + KI +GD+ +AEVVR+L +++ Sbjct: 61 VIDEETVKKVLAVLQDECSDMPKNWNRRFKHNRDKIKTGDIYELAEVVRNLAIREAEKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S E+Q++ A + E+ + E +A ++ L++ +S Sbjct: 121 STGEKQMFTRAKKILASELMYALEMEEEQAEEHLDELLAASAS 163 >gi|52140791|ref|YP_086042.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|222098186|ref|YP_002532243.1| transcriptional regulator, card family [Bacillus cereus Q1] gi|228917367|ref|ZP_04080920.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229032373|ref|ZP_04188344.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|229198880|ref|ZP_04325571.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|51974260|gb|AAU15810.1| transcriptional regulator, CarD family [Bacillus cereus E33L] gi|221242244|gb|ACM14954.1| transcriptional regulator, CarD family [Bacillus cereus Q1] gi|228584583|gb|EEK42710.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|228728936|gb|EEL79941.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228842294|gb|EEM87389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 164 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163 >gi|269217464|ref|ZP_06161318.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon 848 str. F0332] gi|269213085|gb|EEZ79425.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon 848 str. F0332] Length = 163 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 86/162 (53%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + GE +VYP HG I ++ +++ G + + + + + ++VP D+G+R Sbjct: 1 MSYTIGETVVYPHHGAARIEDVFTRKIRGEEKTYLKLRVVQGDLEIQVPADMLEDVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +S+ +++ ++R + + + WSRR + K+ SGD+I +AEVVRDL R D+ Sbjct: 61 VSDDEQLKQVFTVLRAEQIEEPSNWSRRYKANSEKLTSGDVIKVAEVVRDLTRRDADRHL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E+++ A + E+A +SE EA+ L++ L + Sbjct: 121 SAGEKRMLSQARQILGSEVALARQVSEGEALELLDEILGESA 162 >gi|229075538|ref|ZP_04208525.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229098087|ref|ZP_04229035.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|229104182|ref|ZP_04234854.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229117105|ref|ZP_04246484.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228666273|gb|EEL21736.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228679199|gb|EEL33404.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|228685278|gb|EEL39208.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|228707517|gb|EEL59703.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] Length = 158 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 82/151 (54%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI + M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSANNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|157825168|ref|YP_001492888.1| transcriptional regulator [Rickettsia akari str. Hartford] gi|157799126|gb|ABV74380.1| Transcriptional regulator [Rickettsia akari str. Hartford] Length = 177 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 1/171 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T + + + GF+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 5 TQSENKTEQKSGFKIGQRIVYPAHGVGEITNIEYNTIAGTEIKVYVISFSQDKMTLKVPV 64 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD Sbjct: 65 SRAAVVGLRAVASRKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 LH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 LHKN-VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174 >gi|227496787|ref|ZP_03927058.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434] gi|226833703|gb|EEH66086.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434] Length = 164 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 85/163 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG I +I++++V G + + + + + + VP IG+R Sbjct: 1 MTFEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVDYIGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +A +E+ ++R + T WSRR + KI SGD+I +AEVVRDL R D+ Sbjct: 61 VVDAAGLEKVFDVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S E+++ A +V E+A E A + ++ L+S ++ Sbjct: 121 SAGEKRMLSKARQILVSELALAEKTEEEAAESKLDEVLASGTA 163 >gi|47567932|ref|ZP_00238639.1| CarD-like transcriptional regulator [Bacillus cereus G9241] gi|47555410|gb|EAL13754.1| CarD-like transcriptional regulator [Bacillus cereus G9241] Length = 158 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|256546065|ref|ZP_05473418.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398182|gb|EEU11806.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 159 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 75/158 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R + Sbjct: 1 MFKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKANINKMNIRDV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E L ++ + + W+ R +E + +GD+ IA +VRDL D S Sbjct: 61 ISKKEGEEILAILEQDPKDLNSNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +E++L A M E+ S+ + +A +I+ ++ Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDDAEKMIDESIG 158 >gi|165870992|ref|ZP_02215643.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167641498|ref|ZP_02399747.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170709170|ref|ZP_02899595.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] gi|164713203|gb|EDR18729.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167510580|gb|EDR85977.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170125925|gb|EDS94827.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] Length = 153 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 81/152 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R + Sbjct: 1 MFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 61 TDIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 ASEKKMLDNAHEFLISELGLIEGITENQIKSF 152 >gi|209965508|ref|YP_002298423.1| CarD-like transcriptional regulator protein, putative [Rhodospirillum centenum SW] gi|209958974|gb|ACI99610.1| CarD-like transcriptional regulator protein, putative [Rhodospirillum centenum SW] Length = 166 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 81/165 (49%), Positives = 114/165 (69%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + F G+H+VYPAHGVG I I+ +A + + I F+K++M LKVPV KA G Sbjct: 2 SENLEFAAGDHVVYPAHGVGKIIGIETHSIAEQTVTLYAIQFEKERMTLKVPVAKARAAG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R+LS ++ AL+ ++G +R+KR MWSRRAQEY+AKINSGD ++IAEVVRDL+R + Q Sbjct: 62 LRRLSSKDRIKAALETLQGPSRIKRIMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGEDQ 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++SYSERQ+Y +AL R+ RE+A V I E +A +E LS + Sbjct: 122 SDQSYSERQIYHAALERLARELAVVEKIDERKATERLEAVLSKAA 166 >gi|148272243|ref|YP_001221804.1| putative transcription factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830173|emb|CAN01106.1| putative transcription factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 164 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 84/161 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R Sbjct: 1 MIFEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D Sbjct: 61 VIDSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGV 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A ++ EA +++ L+ Sbjct: 121 SAGEKRMLSKARQILVSELALAQKSTDEEASVVLDGVLAQS 161 >gi|30263594|ref|NP_845971.1| CarD family transcriptional regulator [Bacillus anthracis str. Ames] gi|47528992|ref|YP_020341.1| CarD family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186442|ref|YP_029694.1| CarD family transcriptional regulator [Bacillus anthracis str. Sterne] gi|52141890|ref|YP_084935.1| CarD family transcriptional regulator [Bacillus cereus E33L] gi|65320919|ref|ZP_00393878.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bacillus anthracis str. A2012] gi|167636360|ref|ZP_02394661.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0442] gi|170689537|ref|ZP_02880724.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0465] gi|177652471|ref|ZP_02934938.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190564601|ref|ZP_03017522.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|196034117|ref|ZP_03101527.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196038188|ref|ZP_03105497.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|196044624|ref|ZP_03111859.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|218904774|ref|YP_002452608.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225865630|ref|YP_002751008.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|227813522|ref|YP_002813531.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|228928695|ref|ZP_04091731.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934921|ref|ZP_04097752.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947260|ref|ZP_04109554.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229092619|ref|ZP_04223770.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|229123162|ref|ZP_04252368.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|229157223|ref|ZP_04285303.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|229185880|ref|ZP_04313053.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|229602120|ref|YP_002867837.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0248] gi|254686212|ref|ZP_05150071.1| CarD family transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726022|ref|ZP_05187804.1| CarD family transcriptional regulator [Bacillus anthracis str. A1055] gi|254738685|ref|ZP_05196388.1| CarD family transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254744757|ref|ZP_05202435.1| CarD family transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753003|ref|ZP_05205039.1| CarD family transcriptional regulator [Bacillus anthracis str. Vollum] gi|254759274|ref|ZP_05211300.1| CarD family transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055137|ref|YP_003793348.1| CarD family transcriptional regulator [Bacillus anthracis CI] gi|30258229|gb|AAP27457.1| transcriptional regulator, CarD family [Bacillus anthracis str. Ames] gi|47504140|gb|AAT32816.1| transcriptional regulator, CarD family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180369|gb|AAT55745.1| transcriptional regulator, CarD family [Bacillus anthracis str. Sterne] gi|51975359|gb|AAU16909.1| transcriptional regulator, CarD family [Bacillus cereus E33L] gi|167528287|gb|EDR91064.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0442] gi|170666494|gb|EDT17270.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0465] gi|172082145|gb|EDT67212.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190563918|gb|EDV17882.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|195993191|gb|EDX57149.1| transcriptional regulator, CarD family [Bacillus cereus W] gi|196024659|gb|EDX63331.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108] gi|196030596|gb|EDX69194.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99] gi|218535293|gb|ACK87691.1| transcriptional regulator, CarD family [Bacillus cereus AH820] gi|225788624|gb|ACO28841.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102] gi|227004447|gb|ACP14190.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|228597592|gb|EEK55239.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1] gi|228626287|gb|EEK83034.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342] gi|228660255|gb|EEL15889.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201] gi|228690772|gb|EEL44548.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42] gi|228812507|gb|EEM58834.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824821|gb|EEM70622.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831014|gb|EEM76615.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229266528|gb|ACQ48165.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0248] gi|300377306|gb|ADK06210.1| transcriptional regulator, CarD family [Bacillus cereus biovar anthracis str. CI] Length = 158 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|229073067|ref|ZP_04206256.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228710053|gb|EEL62038.1| Transcriptional regulator, CarD [Bacillus cereus F65185] Length = 158 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 79/153 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + R + + + + W +R + KI +G++ AEV+RDL R + Sbjct: 65 VIDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157 >gi|229119116|ref|ZP_04248445.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228664336|gb|EEL19848.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] Length = 158 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 80/153 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E++G K ++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKELSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + +++ + + W +R + KI +G++ AEV+RDL R + Sbjct: 65 VIDILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQKGAEVIRDLIRMKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157 >gi|49479453|ref|YP_037723.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206976148|ref|ZP_03237057.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217961056|ref|YP_002339624.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|222097108|ref|YP_002531165.1| transcriptional regulator, card family [Bacillus cereus Q1] gi|228986740|ref|ZP_04146870.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229140266|ref|ZP_04268823.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|49331009|gb|AAT61655.1| transcriptional regulator, CarD family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206745602|gb|EDZ57000.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97] gi|217063672|gb|ACJ77922.1| transcriptional regulator, CarD family [Bacillus cereus AH187] gi|221241166|gb|ACM13876.1| transcriptional regulator, CarD family [Bacillus cereus Q1] gi|228643199|gb|EEK99473.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26] gi|228773071|gb|EEM21507.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 158 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|229030844|ref|ZP_04186866.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] gi|228730493|gb|EEL81451.1| Transcriptional regulator, CarD [Bacillus cereus AH1271] Length = 158 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 79/153 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R Sbjct: 5 YMFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNIRP 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + R + + + + W +R + KI +G++ AEV+RDL R + Sbjct: 65 VIDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKAL 124 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164 + SE++L + A +V E+ + I+E + + Sbjct: 125 NTSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157 >gi|332653050|ref|ZP_08418795.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] gi|332518196|gb|EGJ47799.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] Length = 158 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 77/158 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +V+P HG G + I +++V G+ E++V+ M + VP +IG+R + Sbjct: 1 MFQIGDKVVHPMHGAGIVDSIVQKKVNGVMREYYVLKLPVRAMVVMVPTENCEEIGVRPI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +R L + W+RR +E +I SGDL +A VV+ L D Q S Sbjct: 61 VDREQADRVLAAIPDIQVEMTQNWNRRYRENMERIKSGDLFEVARVVKGLMLRDVQKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ SA ++ EI S S + I+ L+ Sbjct: 121 TGERKMLHSAKQILISEIVMCQSSSYEDVEACIDHALA 158 >gi|304321707|ref|YP_003855350.1| transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300609|gb|ADM10208.1| transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 308 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 92/175 (52%), Positives = 121/175 (69%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + R Q F+ I+YPAHGVG I ++++Q + ++E FVI F+ +KM L+VPV K Sbjct: 134 AEARRDKNQKFKVNTQIIYPAHGVGNIVDLEKQTIGDFEVELFVIDFEHEKMKLRVPVAK 193 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 A GMR LS ++ AL+L+ G+ARVKRTMWSRRAQEY+AKINSGDL+++AEVVRDL Sbjct: 194 AAASGMRNLSTTEQIDDALELLEGRARVKRTMWSRRAQEYEAKINSGDLVSVAEVVRDLF 253 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 R D QPE+SYSERQL+E A R RE+AAV S +AI+ I ++L K K Sbjct: 254 RADDQPEQSYSERQLFEQARERFGREVAAVRKKSLEKAIDEIHIHLDRKEKVEAK 308 >gi|294084639|ref|YP_003551397.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664212|gb|ADE39313.1| Transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 168 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 116/161 (72%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HGVG I + +EVAG++LE V+ F++D+M L+VP+ KA +G+R L Sbjct: 8 AFEEGDFVVYPTHGVGRILGTETREVAGIELEMLVVRFEQDRMTLRVPMEKAKTLGLRTL 67 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S + +++A+ ++GKARV+RTMWSRRA EY+ KI SGD ++IAEVVRDLHR +Q E+S Sbjct: 68 SSSKQMDQAITTLQGKARVRRTMWSRRAAEYETKIKSGDPVSIAEVVRDLHRRTNQSEQS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 YSERQ+Y++AL R+ RE AA+ I + A +E ++ + Sbjct: 128 YSERQMYQAALERLAREYAAIEKIDQDAAALKLEDMMAEAA 168 >gi|170781116|ref|YP_001709448.1| hypothetical protein CMS_0684 [Clavibacter michiganensis subsp. sepedonicus] gi|169155684|emb|CAQ00804.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 164 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 84/161 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R Sbjct: 1 MIFEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D Sbjct: 61 VIDSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGV 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S E+++ A +V E+A ++ EA +++ L+ Sbjct: 121 SAGEKRMLAKARQILVSELALAQKSTDEEASVVLDGVLAQS 161 >gi|83308694|emb|CAJ01604.1| putative transcriptional factor regulator [Methylocapsa acidiphila] Length = 175 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 101/155 (65%), Positives = 123/155 (79%) Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80 VYPAHGVG I I+EQ VAG KLE FVI+F KDKM LKVP K +GMRKL+EA V++ Sbjct: 2 VYPAHGVGQIIAIEEQVVAGFKLELFVISFIKDKMILKVPTPKVASVGMRKLAEAGVVKK 61 Query: 81 ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYE 140 AL + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+D+QPE+SYSERQLYE Sbjct: 62 ALDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSDAQPEQSYSERQLYE 121 Query: 141 SALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 +AL+RM REI V ++E E++ +IE L + Sbjct: 122 AALDRMAREIVVVQKLTETESLKVIEGQLLKGPRR 156 >gi|313887993|ref|ZP_07821671.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845948|gb|EFR33331.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 160 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 1/158 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ IVYP HG G I I+E+E+ G +++++ + + + VPV A +IG+R + Sbjct: 1 MFNIGDKIVYPMHGAGEIVAIEEREILGDVHKYYIMRLPINDLKVMVPVKNAKEIGVRDI 60 Query: 73 SEAHFVERALKLVRGKARV-KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 S+A +E+ LK + + V W+RR + KI SGDL+ IA+VVR L D + Sbjct: 61 SDADTMEKVLKALSSEEEVSMPKNWNRRYRYNLDKIKSGDLMEIADVVRSLESLDREKSL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S ER++ A +V E+ V + E LI+ + Sbjct: 121 STGERKILNEAKQIIVSEMVLVFEKNVEEVTKLIDDAI 158 >gi|308235377|ref|ZP_07666114.1| CarD-like protein [Gardnerella vaginalis ATCC 14018] Length = 198 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R Sbjct: 1 MGYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + ++ EIA I E +A L+ VNL E+ ++ ++A Sbjct: 121 GLSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNLGYADPLPGDEQHHTQAPEEA 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|154685003|ref|YP_001420164.1| YdeB [Bacillus amyloliquefaciens FZB42] gi|154350854|gb|ABS72933.1| YdeB [Bacillus amyloliquefaciens FZB42] Length = 153 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 79/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG GTI I+E++ K +++VI M + +P K + +R + Sbjct: 1 MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + K W +R KI +G++ AEVVRDL R + + Sbjct: 61 TDIRALKHIIHIFQHGESDKLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 SSEKKMLDNAYEFLISELEVIKGITEKQIKSF 152 >gi|15616497|ref|NP_244803.1| transcriptional regulator [Bacillus halodurans C-125] gi|10176560|dbj|BAB07654.1| transcriptional regulator [Bacillus halodurans C-125] Length = 153 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 78/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+H+VYP HG G I I+E+E+AG + ++FVI + M + +P K +R + Sbjct: 1 MFQIGDHVVYPMHGAGIIKAIEEKEIAGERKQYFVIKMSINNMDVMIPADKISSTNIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ +++ + + + + W R + K+ +G + AEVVRDL R + + Sbjct: 61 TDLTALKQIIHIFQHGESEQLLPWKERYKMNADKMKTGHIQEGAEVVRDLMRIKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ + A + E+ + I+E + Sbjct: 121 PSEKKMLDDAREFLNSELGLIEGITENHIKSF 152 >gi|229197758|ref|ZP_04324477.1| Transcriptional regulator, CarD [Bacillus cereus m1293] gi|228585703|gb|EEK43802.1| Transcriptional regulator, CarD [Bacillus cereus m1293] Length = 158 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 80/151 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DITALIHIINIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|294790738|ref|ZP_06755896.1| transcriptional regulator, CarD family [Scardovia inopinata F0304] gi|294458635|gb|EFG26988.1| transcriptional regulator, CarD family [Scardovia inopinata F0304] Length = 219 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R Sbjct: 1 MEYKVGDTVVYPRHGAARIEEISERTLRGVTRTYLRLTVLSSDGLEISVPADSVEKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQP 129 ++ V + +++R ++T WSRR + KI +GD+ IAEVVRDL R D Sbjct: 61 EIVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDDH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + EIA I + EA L++VNL + + +K ++ + Sbjct: 121 GLSAGEKRMLSKARGILTSEIALSEGIDDDEAQRLLDVNLGYQDPEPGDDKHHAKAPQEP 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|320354570|ref|YP_004195909.1| CarD family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123072|gb|ADW18618.1| transcriptional regulator, CarD family [Desulfobulbus propionicus DSM 2032] Length = 159 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 1/156 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ VYPAHGVG I IK Q + G+ F+V+ + M + +P + ++G+R + Sbjct: 1 MFSKGDMAVYPAHGVGLIEAIKTQSIGGIDQSFYVMKILDNDMTIMIPTATSANVGLRAI 60 Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + + +++ + ++ W+RR +EY KI +G + +A V+RDL + Sbjct: 61 ISGEDVPKVIDILKERDIKITAQTWNRRYREYMEKIKTGSVFEVAVVLRDLFLLKEDKDL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 SY ER++ ++A N +V+E++ + E IE Sbjct: 121 SYGERKMLDTAKNLLVKELSLAKQMEEGMIEQQIEK 156 >gi|163797039|ref|ZP_02190995.1| Transcriptional regulator [alpha proteobacterium BAL199] gi|159177786|gb|EDP62337.1| Transcriptional regulator [alpha proteobacterium BAL199] Length = 166 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 80/166 (48%), Positives = 120/166 (72%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 F+TG+ +VYP HGVG I + Q VAG +L+ VI F++D+M L++PVGKA Sbjct: 1 MTKKSSEFKTGDFVVYPTHGVGLIKGTETQIVAGTELDLLVIDFEQDRMTLRIPVGKART 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R+LS ++ AL+ ++G+A+V+RTMWSRRAQEY+AKINSGD ++IAEVVRDL R+ Sbjct: 61 SGLRRLSSRKQMDVALQKLKGRAKVRRTMWSRRAQEYEAKINSGDPVSIAEVVRDLRRSS 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 +Q ++SYSERQ+Y++A++R+ RE A + I E A++ +E + + Sbjct: 121 NQADQSYSERQMYQAAIDRLAREFAKIEQIDEVTAVDRLEKLMDAA 166 >gi|91206102|ref|YP_538457.1| transcriptional regulator [Rickettsia bellii RML369-C] gi|157826465|ref|YP_001495529.1| transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069646|gb|ABE05368.1| Transcriptional regulator [Rickettsia bellii RML369-C] gi|157801769|gb|ABV78492.1| Transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 178 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + K + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM +KVPV Sbjct: 7 SEDKTEQQKSEFKIGQRIVYPAHGVGEITNIENHTIAGTEIKVYVISFPQDKMTVKVPVS 66 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++A+AEV+RDL Sbjct: 67 RATVVGLRAVASKKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAVAEVLRDL 126 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 H+ ++SYSER LYE+ALNR+ E+A + +I EAIN + L K Sbjct: 127 HKN-VDNDRSYSERTLYEAALNRLAGELAILENIDSSEAINKLVEVLREK 175 >gi|227489404|ref|ZP_03919720.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227540998|ref|ZP_03971047.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090582|gb|EEI25894.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183258|gb|EEI64230.1| CarD family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 193 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG + + +++E G +F V+ + ++VPV A +G+R Sbjct: 1 MEFNVGDIVVYPHHGAAEVAKTEQREHKGEMTDFLVLKILHSDLVVRVPVANAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVGKEGLEKVFGMLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL---IEVNLS-SKSSKTEKSTSENQDKA 187 S E+++ A +V E+A + + A + + L+ + ++ K SE + + Sbjct: 121 SAGEKRMLAKARQILVGELALAGPVDDKLADDFEARLTEELNRQREARAPKLASELEPEE 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|51473313|ref|YP_067070.1| hypothetical protein RT0102 [Rickettsia typhi str. Wilmington] gi|51459625|gb|AAU03588.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 177 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVP Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGNEIKVYVISFSQDKMTLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 64 VSRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 124 DLHKN-VDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 174 >gi|116327105|ref|YP_796825.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332238|ref|YP_801956.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119849|gb|ABJ77892.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125927|gb|ABJ77198.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 181 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 2/183 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++K + + G+++VYP HGVG I EI ++ + G K + +V+ KM + +P Sbjct: 1 MAAKKKNSEIEH--KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIP 58 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA + +R + + +++ + L++ W R Q KI SG + + EV R Sbjct: 59 VDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCR 118 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 +L R S E S ER+LYESA N + E+A +++ EA NL+ L+S + +EK Sbjct: 119 NLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLAPSEKKA 178 Query: 181 SEN 183 E+ Sbjct: 179 EED 181 >gi|67458425|ref|YP_246049.1| transcriptional regulator [Rickettsia felis URRWXCal2] gi|67003958|gb|AAY60884.1| Transcriptional regulator [Rickettsia felis URRWXCal2] Length = 177 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 5 TQSENKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 64 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD Sbjct: 65 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 LH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 LHKN-VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174 >gi|157964091|ref|YP_001498915.1| transcriptional regulator [Rickettsia massiliae MTU5] gi|157843867|gb|ABV84368.1| Transcriptional regulator [Rickettsia massiliae MTU5] Length = 195 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 23 TQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 82 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD Sbjct: 83 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 142 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 LH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 143 LHKN-VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 192 >gi|239948445|ref|ZP_04700198.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes scapularis] gi|239922721|gb|EER22745.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes scapularis] Length = 177 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 5 TQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 64 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD Sbjct: 65 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 LH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 LHKN-VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174 >gi|95929125|ref|ZP_01311870.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans DSM 684] gi|95135026|gb|EAT16680.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans DSM 684] Length = 162 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ VYPA GVG I I+ +E +G + +F+V+ M + VP A +GMR Sbjct: 1 MLFSVGDKAVYPAQGVGIIESIETKEFSGEEHDFYVLRICDSDMTIMVPTANAEQVGMRG 60 Query: 72 LSEAHFVERALKLVRGKARVKR--TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 L + V++ +++ + + WSRR +EY+ KI SGDL+ +A V+R+L+ + Sbjct: 61 LVDKAHVQKVYDVLQNTDAMAGSISSWSRRQREYNEKIKSGDLLEVAAVLRELYMIGNGK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 E SY E+++ E A +V+E+A + E + + +E Sbjct: 121 ELSYGEKKVLELARRLVVKEVAFAEGVEEDQICSRVEGV 159 >gi|311066998|ref|YP_003971921.1| putative transcriptional regulator [Bacillus atrophaeus 1942] gi|310867515|gb|ADP30990.1| putative transcriptional regulator [Bacillus atrophaeus 1942] Length = 153 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 80/152 (52%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K + +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEYSEEKQQYYVIKMSISNMQVMIPTRKILSSSIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + W +R + KI +G++ AEVVRDL R + + Sbjct: 61 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 121 SSEKKMLDNAYEFLISELEVIKGITENQIKSF 152 >gi|289178764|gb|ADC86010.1| CarD-like transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 223 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + EI ++ V G+ E+ ++ D + + VPV +G+R Sbjct: 26 MGYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVR 85 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + + V R +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 86 DIVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEH 145 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA +SE E L++VNL + + +E ++ Sbjct: 146 GLSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLGYAEPQEGDAEHHTEVPEEP 205 Query: 188 A 188 A Sbjct: 206 A 206 >gi|292571621|gb|ADE29536.1| Transcriptional regulator [Rickettsia prowazekii Rp22] Length = 177 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 77/172 (44%), Positives = 114/172 (66%), Gaps = 1/172 (0%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 63 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R Sbjct: 64 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 DLH+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 124 DLHKN-VDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 174 >gi|295694809|ref|YP_003588047.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912] gi|295410411|gb|ADG04903.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912] Length = 165 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G I I+E+EV G ++++ + + VP+ + +G+R++ Sbjct: 1 MFNVGDRVVYPMHGAGVIESIEEREVLGKTGRYYIMRMPVGDIKVMVPIEQTGAVGLREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +A V + L ++ + + W+RR ++ KI SGD AIA+VVR L D S Sbjct: 61 VDAEGVHKILDILFDEGTQETAAWNRRYRDNMDKIKSGDAFAIADVVRQLAWLDRHKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 E+++YE A ++ E+ + +A L Sbjct: 121 TGEKRMYEMARQILLSELRLA--APQEDADRL 150 >gi|227485949|ref|ZP_03916265.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172] gi|227235994|gb|EEI86009.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172] Length = 160 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 78/159 (49%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ IVYP HG G I +++ E G + E++++ +M + +P D +R Sbjct: 1 MMFKVGDKIVYPMHGAGVIDAVEKIEFMGEEREYYILKMPIGEMDISIPADNMKDANIRF 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + L ++ K + W++R ++ + +GD+ IA++VR+L DS Sbjct: 61 IISKEEGLEVLAILDDKPTEMNSNWTKRYRDNQEILKTGDIFEIAKMVRNLAILDSDKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S +E++L A + E+ S+ + EA +I+ ++ Sbjct: 121 STTEKKLLNRARRILASELVMAGSLEKEEAEKMIDESIG 159 >gi|157803212|ref|YP_001491761.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel] gi|157784475|gb|ABV72976.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel] Length = 175 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 1/170 (0%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 Q + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV Sbjct: 4 TTQSEHKTKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFAQDKMTLKVPVN 63 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDL Sbjct: 64 RATIVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDL 123 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 H+ ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 124 HKN-VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 172 >gi|15891953|ref|NP_359667.1| hypothetical protein RC0030 [Rickettsia conorii str. Malish 7] gi|157827900|ref|YP_001494142.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932588|ref|YP_001649377.1| carD-like transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|238650343|ref|YP_002916195.1| carD-like transcriptional regulator [Rickettsia peacockii str. Rustic] gi|15619064|gb|AAL02568.1| unknown [Rickettsia conorii str. Malish 7] gi|157800381|gb|ABV75634.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907675|gb|ABY71971.1| carD-like transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|238624441|gb|ACR47147.1| carD-like transcriptional regulator [Rickettsia peacockii str. Rustic] Length = 173 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 1/167 (0%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A Sbjct: 5 TQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAA 64 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ Sbjct: 65 VVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKN 124 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 -VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170 >gi|294827601|ref|NP_710430.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|293385445|gb|AAN47448.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] Length = 181 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 2/183 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++K + + G+++VYP HGVG I EI ++ + G K + +V+ KM + +P Sbjct: 1 MAAKKKNSEIEH--KVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIP 58 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA + +R + + +++ + L++ W R Q KI SG + + EV R Sbjct: 59 VDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCR 118 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 +L R S E S ER+LYESA N + E+A +++ EA NL+ L+S S +EK Sbjct: 119 NLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKA 178 Query: 181 SEN 183 E Sbjct: 179 EEE 181 >gi|295394468|ref|ZP_06804691.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972647|gb|EFG48499.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 175 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 73/144 (50%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 ++R + F+ G+ +VYP HG TI EIK + + G + + + ++VP Sbjct: 9 RERGKNKMSFQVGDTVVYPHHGAATIQEIKTRTIKGEDKLYLKLQVSHGDLTIEVPAENC 68 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +G+R + +E+ +++R + + T WSRR + K SGD+I +AEVVRDL R Sbjct: 69 DLVGVRDVVGEEGLEKVFQVLRAEVTEEPTNWSRRYKANLEKFQSGDVIKVAEVVRDLWR 128 Query: 125 TDSQPEKSYSERQLYESALNRMVR 148 + S E+++ A +V Sbjct: 129 REQDRGLSTGEKRMLAKARQVLVS 152 >gi|282883398|ref|ZP_06291990.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|300813669|ref|ZP_07093991.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281296754|gb|EFA89258.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|300512211|gb|EFK39389.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 160 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 1/158 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG GTI I+++E+ G K E++V+ +K+ + +PV KA ++G+RK+ Sbjct: 1 MFKIGDKVVYPMHGAGTIVAIEDREILGKKHEYYVLLLPINKLKVMIPVKKADEVGVRKI 60 Query: 73 SEAHFVERALKLVRGKARVK-RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 E +E L+++ + + K T W+RR + KI SG+LI IA V++ L + DS+ Sbjct: 61 MEISEMEEVLEILSSEEKFKMPTNWNRRYRFNLDKIKSGNLIEIAGVIKSLEKLDSKKSL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S ER++ A ++ E+A V E +++++ + Sbjct: 121 STGERKILNEARIIIISEMALVFDKDVDEVVSMVDEAI 158 >gi|228916274|ref|ZP_04079844.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843472|gb|EEM88550.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 158 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 81/151 (53%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ ++ +R ++ Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGEILNSNIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + + + + + W +R + KI +G + AEVVRDL R + + Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157 >gi|229586256|ref|YP_002844757.1| Transcriptional regulator [Rickettsia africae ESF-5] gi|228021306|gb|ACP53014.1| Transcriptional regulator [Rickettsia africae ESF-5] Length = 173 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A Sbjct: 6 QSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAV 65 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ Sbjct: 66 VGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKN- 124 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170 >gi|83591419|ref|YP_425171.1| CarD family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574333|gb|ABC20884.1| transcriptional regulator, CarD family [Rhodospirillum rubrum ATCC 11170] Length = 165 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 85/164 (51%), Positives = 118/164 (71%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + + TG+ +VYP HGVG + +I++Q + G LE VI F++++M L++P+ K + G Sbjct: 2 SNQLQYETGDFVVYPTHGVGQVLDIEKQVIGGYDLELLVIGFERERMKLRIPMPKVRESG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R+LS +E AL +RGKARVKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +Q Sbjct: 62 LRRLSTKKVMESALVTLRGKARVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNATQ 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 PE+SYSERQ+YE AL R+ E+AA+ I A +E LS+ Sbjct: 122 PEQSYSERQIYELALERLTCELAAIEDIDASTATQKVEKLLSAA 165 >gi|256372655|ref|YP_003110479.1| CarD family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256009239|gb|ACU54806.1| transcriptional regulator, CarD family [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 76/159 (47%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VYP HG IT + E G E+FV+ + +++PV ++G+R+ Sbjct: 1 MPFDVGDKVVYPQHGAAVITGREVVEAFGEAKEYFVVTVAYGDLTVRLPVDAVDEVGLRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + VE ++ K WSRR + + K+ SGD+ +AEVVR+L D Sbjct: 61 VINDEEVEEVFAVLGKKDVRMPANWSRRYKNHLEKVKSGDIYQVAEVVRNLTLRDHDKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S ER++ A +V E+ ++ EA ++ L+ Sbjct: 121 SAGERRMLAKARQVLVSELTFALDVAPEEAEARLDKALA 159 >gi|162449975|ref|YP_001612342.1| putative transcription factor [Sorangium cellulosum 'So ce 56'] gi|161160557|emb|CAN91862.1| putative transcription factor [Sorangium cellulosum 'So ce 56'] Length = 168 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 1/156 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ VYPA GV + I+E+++AG + F+V+ + VPV A +G+R++ Sbjct: 9 FKVGDKAVYPAQGVAEVVNIEEKDIAGNRQRFYVLRILDTDRKIMVPVSNASAVGLRQVI 68 Query: 74 EAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++R + W+RR + + KI +G + +AEV+RDL+R + + S Sbjct: 69 SEQEIREIFDILRERTIAFDNQTWNRRYRGFMDKIKTGSIYDVAEVLRDLYRLKTDKQLS 128 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 + ER++ ++A +V+EIA +E + IE Sbjct: 129 FGERRMLDTARTLIVKEIAIARGQTEEQVKTEIEAI 164 >gi|310826140|ref|YP_003958497.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737874|gb|ADO35534.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 157 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 86/157 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G + +I+E+E+ ++++ + M + +PV KA ++G+R + Sbjct: 1 MYEIGDKIVYPMHGAGVVKDIEEKEIFDTTQMYYLMEIVSEGMEILIPVDKADEVGVRDI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +E+ L + + WS+R Q+ + SGD+ +A+VV++L D + S Sbjct: 61 VTSDVIEKMLDSLEEPSDQMNGNWSKRYQDNMDILKSGDIFDVAKVVKNLTLLDRKKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+++ SA N ++ E+ V S+ E++ +IE + Sbjct: 121 TGEKKMLTSARNFLISEMVLVQGRSKEESLQVIEEKI 157 >gi|315186624|gb|EFU20383.1| transcriptional regulator, CarD family [Spirochaeta thermophila DSM 6578] Length = 218 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 81/176 (46%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT + F+ +H+VYP GVG + I+E+E G L ++VI M + VP Sbjct: 1 MTSRNTSAQPEPQFKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA +IG+R + AL + + T W R Q + G ++ IA VVR Sbjct: 61 VHKAAEIGIRPIVSREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 L+ E ER+L+++AL +V EI+ IS E I L +S+ Sbjct: 121 ALYYRSKIKELPILERKLFDNALRILVDEISFALEISAKEVEARIFQQLEQESAPI 176 >gi|291456490|ref|ZP_06595880.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM 20213] gi|291381767|gb|EFE89285.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM 20213] Length = 197 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 2/167 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R Sbjct: 1 MSYQVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVSGSEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 S E+++ A + EIA I E EA L++VNL ++ Sbjct: 121 GLSAGEKRMLTKARAILTSEIALSEKIDETEAQRLLDVNLGYAPAQV 167 >gi|298253496|ref|ZP_06977286.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1] gi|297532263|gb|EFH71151.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1] Length = 215 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 4/179 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R + Sbjct: 20 YQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRDI 79 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPEK 131 A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 80 VGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHGL 139 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A + ++ EIA I E EA L++VNL K + E + ++ A Sbjct: 140 SAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQEGDENHHTVAPEEPA 198 >gi|34581009|ref|ZP_00142489.1| hypothetical protein [Rickettsia sibirica 246] gi|28262394|gb|EAA25898.1| unknown [Rickettsia sibirica 246] Length = 173 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 1/167 (0%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A Sbjct: 5 TQSEQKSEFKIGQRIVYPAHGVGEITNIEYYTIAGTEIKVYVISFSQDKMTLKVPVSRAA 64 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH+ Sbjct: 65 VVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKN 124 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++SYSER LYESALNR+ E+A + +I EAIN + L K Sbjct: 125 -VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170 >gi|77917722|ref|YP_355537.1| putative transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77543805|gb|ABA87367.1| transcriptional regulator, CarD family [Pelobacter carbinolicus DSM 2380] Length = 161 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPA GVG I I+ +E G K++F+V+ M + +PV +GMR L Sbjct: 1 MFKIGDMAVYPAQGVGVIEAIESKEFVGQKMDFYVLRIVDSDMTIMIPVNNVDSVGMRSL 60 Query: 73 SEAHFVERALKLVRGKARVKRT--MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + V +++ K + + WSRR ++Y+ KI SGD+ +AEV+R+L+ E Sbjct: 61 IDKDRVRTVYDILKDKTQNQGNLASWSRRQRDYNEKIRSGDVFEVAEVLRELYMIREDKE 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 SY E+++ E A +V+EIA + E + + +E Sbjct: 121 LSYGEKKVLELARKLVVKEIALADGKDEQQVTDRVES 157 >gi|298530964|ref|ZP_07018365.1| transcriptional regulator, CarD family [Desulfonatronospira thiodismutans ASO3-1] gi|298508987|gb|EFI32892.1| transcriptional regulator, CarD family [Desulfonatronospira thiodismutans ASO3-1] Length = 177 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 3/176 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYPA GVG + +I+EQ++ G K +++ + + L VPV A ++G+R + Sbjct: 1 MFSVGELVVYPAQGVGRVEKIEEQDLGGAKAVLYIVRILSNNVTLMVPVNNADNVGLRPV 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 S + L + ++ W+RR +EY K+ S DL +A V+++L Sbjct: 61 SGKGQGQEILSFLEDRSDFTGYSGQNWNRRYREYSDKLKSKDLQDVAYVLKELFLISRDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185 E S+ ER+L E A+ + E++ SI + EA + +E + S + + +D Sbjct: 121 ELSFGERRLMEQAMGLISMELSYALSIDQEEAKSRVEALFADILSPEVQEHDDQED 176 >gi|194015928|ref|ZP_03054543.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012283|gb|EDW21850.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 74/152 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVINMSISHMKVMIPTRKISGSRIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + + + + + W R KI +G + AEVVRDL R + + Sbjct: 61 TDILALNNVMDIFQHGESDQIPTWKERHTINTNKIKTGSIQDGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ + A ++ E+ + I+E + + Sbjct: 121 ASEKKMLDDAHEFLLSELEVIKGITEKQIKSF 152 >gi|157691253|ref|YP_001485715.1| transcription regulator CarD [Bacillus pumilus SAFR-032] gi|157680011|gb|ABV61155.1| CarD family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 153 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 75/152 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R + Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVIKMSISHMKVMIPTRKISGSRIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + + + + + W R KI +GD+ AEVVRDL R + + Sbjct: 61 TDLLALNNVMHVFQHGESDQLLTWKERHTINTNKIKTGDIQDGAEVVRDLMRMKKEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ + A ++ E+ + I+E + + Sbjct: 121 ASEKKMLDEAHEFLLSELEVIEGITEKQIKSF 152 >gi|332703818|ref|ZP_08423906.1| transcriptional regulator, CarD family [Desulfovibrio africanus str. Walvis Bay] gi|332553967|gb|EGJ51011.1| transcriptional regulator, CarD family [Desulfovibrio africanus str. Walvis Bay] Length = 194 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R+ R F + +VYPA GVG + I+ QE+ G EF+++ + + L VPV A + Sbjct: 19 REGTRPVFSPNDLVVYPAQGVGRVERIQRQEIGGASTEFYIVRILSNNVTLMVPVPNARN 78 Query: 67 IGMRKLSEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 +G+R + A E L+ ++ ++ W+RR +EY K+ SG L +A V+++L Sbjct: 79 VGLRPVCSATSGEAILESLKDRSDFTGYTGQNWNRRYREYSEKLKSGALEDVAYVLKELL 138 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI----EVNLSS 171 + E S+ ER+L E A+N + E++ + E I E L+ Sbjct: 139 LIGNDKELSFGERRLLEQAMNLITLELSFCLEKPQKEIQERINSLFEDVLNK 190 >gi|297243682|ref|ZP_06927613.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD] gi|296888433|gb|EFH27174.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD] Length = 208 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 4/179 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRKL 72 ++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R + Sbjct: 13 YQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRDI 72 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPEK 131 A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 73 VGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHGL 132 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 S E+++ A + ++ EIA I E EA L++VNL K + E + ++ A Sbjct: 133 SAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQKGDENHHTVAPEEPA 191 >gi|51246583|ref|YP_066467.1| transcription factor [Desulfotalea psychrophila LSv54] gi|50877620|emb|CAG37460.1| related to transcription factor [Desulfotalea psychrophila LSv54] Length = 165 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 1/158 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPAHGVG I ++ Q VAG F+V+ + M + +P + +G+R + Sbjct: 8 FVAGDMAVYPAHGVGVIKSVETQTVAGTDQSFYVMEIMGNNMTIMIPTASSEKVGLRAIV 67 Query: 74 EAHFVERALKLVRGKARVK-RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V + ++ + W+RR ++Y KI +G + +A V+RDL + S Sbjct: 68 SEEQVSEVVTILEDRDVELGSQTWNRRYRDYMEKIKTGSVHEVAAVLRDLFLLSVDKDLS 127 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 Y ER++ ++A +V+E++ I E + I+ S Sbjct: 128 YGERKMLDTAKGLLVKELSLAKKIEEVAMSDQIDAIFS 165 >gi|154497963|ref|ZP_02036341.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC 29799] gi|150272953|gb|EDN00110.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC 29799] Length = 158 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 77/158 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IV+P HG G + I ++V G+ E++++ M + VP + +IG+R + Sbjct: 1 MFQVGDKIVHPMHGAGVVDSIVRKKVNGVVREYYILKLPVGGMLVMVPTEHSEEIGVRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + +R L + W+RR +E ++ SGDL+ +A VV+ L R D S Sbjct: 61 CQRDEADRVLAAIPDIEVDMTQNWNRRYRENMMRLKSGDLLEVARVVKGLMRRDEDRGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ SA ++ EI + S + I +S Sbjct: 121 TGERKMLHSAKQILISEIVLSQNASYEDVEARINGAMS 158 >gi|283783080|ref|YP_003373834.1| CarD-like protein [Gardnerella vaginalis 409-05] gi|283440982|gb|ADB13448.1| CarD-like protein [Gardnerella vaginalis 409-05] Length = 198 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70 ++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R Sbjct: 1 MEYQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + A V + +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + ++ EIA I E EA L++VNL K + E + ++ Sbjct: 121 GLSAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQEGDENHHTVAPEEP 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|327439855|dbj|BAK16220.1| transcriptional regulator, similar to M. xanthus CarD [Solibacillus silvestris StLB046] Length = 153 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 79/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ GE+I+YP HG G I ++E+E+ G K + ++I M + +P+ K + +R + Sbjct: 1 MFQIGENIIYPMHGAGIIKAVEEKEILGEKQQCYIIKMSVGNMQITIPMDKILSSSIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ L + + + W +R + K+ +G ++ AEVVRDL R + + Sbjct: 61 TDIIELKHILHIFQHGESDEVLPWRQRYKVNTDKVKTGKILECAEVVRDLMRMKEEKALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ + ++ E+ + I+E + + Sbjct: 121 TSEKEMLNNTHQFLISELGLIKGITENQIKSF 152 >gi|307719573|ref|YP_003875105.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306533298|gb|ADN02832.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 217 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 77/165 (46%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT + F+ +H+VYP GVG + I+E+E G L ++VI M + VP Sbjct: 1 MTSRNTSAQPEPQFKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V KA +IG+R + AL + + T W R Q + G ++ IA VVR Sbjct: 61 VHKAAEIGIRPIVSREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 L+ E ER+L+++AL +V EI+ IS E I Sbjct: 121 ALYYRSKIKELPILERKLFDNALRILVDEISFALEISAKEVEARI 165 >gi|291059888|gb|ADD72623.1| transcription factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 243 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 73/164 (44%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R + Sbjct: 70 AFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTI 129 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ERAL+ + W R Q SG ++ A VVR L+ E Sbjct: 130 VKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELP 189 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ER+LY+SA E+ + PE LI L Sbjct: 190 IQERRLYDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENP 233 >gi|15639502|ref|NP_218952.1| transcription factor (carD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025741|ref|YP_001933513.1| transcription factor [Treponema pallidum subsp. pallidum SS14] gi|3322803|gb|AAC65499.1| transcription factor (carD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018316|gb|ACD70934.1| transcription factor [Treponema pallidum subsp. pallidum SS14] Length = 208 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 73/164 (44%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R + Sbjct: 35 AFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTI 94 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ERAL+ + W R Q SG ++ A VVR L+ E Sbjct: 95 VKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELP 154 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 ER+LY+SA E+ + PE LI L Sbjct: 155 IQERRLYDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENP 198 >gi|183222034|ref|YP_001840030.1| CarD family transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912101|ref|YP_001963656.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776777|gb|ABZ95078.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780456|gb|ABZ98754.1| Transcriptional regulator, CarD family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 193 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 6/191 (3%) Query: 1 MTFQQKRDAMRQ-GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 M ++ + ++ F+ G+++VYP HGVG +TE+ ++ + G K + + + KM + + Sbjct: 1 MATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSI 60 Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119 PV +A+D+G+R + + +++ L L++ W R Q KI SG + +A+V Sbjct: 61 PVDRAMDVGIRSIIDKKEIKKVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVC 120 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS-----KSS 174 R+L+R E S ER+LYESA N + EIA + + EA N++ L++ Sbjct: 121 RNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQEEAGNIVSDVLAASVQGIAPP 180 Query: 175 KTEKSTSENQD 185 K ++ D Sbjct: 181 PPPKELDDDLD 191 >gi|85859811|ref|YP_462013.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722902|gb|ABC77845.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB] Length = 161 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 88/159 (55%), Gaps = 1/159 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPA GVG I I+ +EV G +F+++ + M + +P G A +G+R+L Sbjct: 1 MFKVGDLAVYPAQGVGVIEAIESREVMGSTQKFYIMKIMSNGMKIMIPTGSAESVGLREL 60 Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + ++++ K + + W++R +EY KI +G + IA V+RDL + Sbjct: 61 ILEDDVPKVYEILKNKDITIDKQTWNKRYREYLEKIKTGSVFEIARVLRDLLILKNDKNL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S+ ER++ ++A + +++EI+ ++ E + ++ S Sbjct: 121 SFGERKMMDTAKSLLIKEISIASNAEETKIEQDLKTIFS 159 >gi|229013922|ref|ZP_04171049.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] gi|229062401|ref|ZP_04199717.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228716872|gb|EEL68559.1| Transcriptional regulator, CarD [Bacillus cereus AH603] gi|228747392|gb|EEL97268.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048] Length = 162 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 82/161 (50%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+ Sbjct: 1 MDDLFQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMNQLQKSGI 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + ++ L W +R K+ +G+L AEVVRDL R + + Sbjct: 61 RYIVDKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKER 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE+Q+ ++A ++ E+A V ++SE +A ++ ++ Sbjct: 121 ALNASEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 161 >gi|229135557|ref|ZP_04264340.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] gi|229169450|ref|ZP_04297156.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228614008|gb|EEK71127.1| Transcriptional regulator, CarD [Bacillus cereus AH621] gi|228647899|gb|EEL03951.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196] Length = 162 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 82/161 (50%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+ Sbjct: 1 MDDLFQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGI 60 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + + ++ L W +R K+ +G+L AEVVRDL R + + Sbjct: 61 RYIVDKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKER 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE+Q+ ++A ++ E+A V ++SE +A ++ ++ Sbjct: 121 ALNASEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 161 >gi|262197699|ref|YP_003268908.1| CarD family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081046|gb|ACY17015.1| transcriptional regulator, CarD family [Haliangium ochraceum DSM 14365] Length = 162 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ VYPA GV + I+ +E+ F+V+ +M + VP KA +G+R ++ Sbjct: 4 FSIGDKAVYPAQGVAEVVGIENKEINSTICSFYVLKVLDTEMQILVPKDKADQVGLRPVA 63 Query: 74 EAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE ++R + + + W+RR + + KI +G L +AEV RDL+R S S Sbjct: 64 SDEEVEEVFDILREQDIHIDKQTWNRRYRGFMEKIKTGSLFEVAEVFRDLYRLKSTKTLS 123 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ER++ ++A N +V+E+A + E +E ++ Sbjct: 124 FGERRMLDTAKNLIVKELAVARNWDEQRVEKELEKAFAA 162 >gi|8131942|gb|AAF73146.1|AF149031_1 unknown [Sinorhizobium meliloti] Length = 162 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 118/163 (72%), Positives = 138/163 (84%), Gaps = 3/163 (1%) Query: 28 GTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRG 87 G I I+EQEVAGMKLE FVI F+KDKM LKVPV KA+ IGMRKLSE FV+RALK+V+G Sbjct: 1 GQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDRALKVVQG 60 Query: 88 KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMV 147 KARVKRTMWSRRAQEYDAKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM Sbjct: 61 KARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMA 120 Query: 148 REIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN--QDKAA 188 REIAAVN +SE EA+ L+E NL+ K K K+ E+ QD+AA Sbjct: 121 REIAAVNRMSETEAVRLVEANLN-KGPKRGKAIEEDDAQDEAA 162 >gi|163942446|ref|YP_001647330.1| CarD family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864643|gb|ABY45702.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis KBAB4] Length = 159 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 81/158 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 1 MFQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGIRYI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 61 VDKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A ++ E+A V ++SE +A ++ ++ Sbjct: 121 ASEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 158 >gi|242280390|ref|YP_002992519.1| CarD family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123284|gb|ACS80980.1| transcriptional regulator, CarD family [Desulfovibrio salexigens DSM 2638] Length = 171 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 3/169 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYP+ GVG + I+ QE+ G EF+++ + + L VPV A ++G+R + Sbjct: 1 MFELDQLVVYPSQGVGKVERIESQEIGGATAEFYIVRILSNNVTLMVPVMNAHNVGLRAV 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + ++ ++ W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CDKDAGMEIFESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLQDVAYVLKELFLIGRDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 E S+ ER+L E A+ + E++ + + E I S K E+ Sbjct: 121 ELSFGERRLLEQAMGLVSMELSFALDLDQEEIKEDINALFSDVLEKQEE 169 >gi|323700581|ref|ZP_08112493.1| transcriptional regulator, CarD family [Desulfovibrio sp. ND132] gi|323460513|gb|EGB16378.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans ND132] Length = 171 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 3/171 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A+++G+R + Sbjct: 1 MFKVDELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAVNVGLRSV 60 Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A + + ++ + W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CPADVGQAIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELFLIGKDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 E S+ ER+L E A+ + E+A S+ E I + + EK+ Sbjct: 121 ELSFGERRLLEQAMGLVSMELAYSLDRSQEEIKGDINEMFADVIAAQEKND 171 >gi|183601479|ref|ZP_02962849.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219683979|ref|YP_002470362.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241191021|ref|YP_002968415.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196427|ref|YP_002969982.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219085|gb|EDT89726.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219621629|gb|ACL29786.1| possible transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249413|gb|ACS46353.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250981|gb|ACS47920.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794010|gb|ADG33545.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 198 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-DKMCLKVPVGKAIDIGMR 70 G++ G+ +VYP HG + EI ++ V G+ E+ ++ D + + VPV +G+R Sbjct: 1 MGYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQP 129 + + V R +++R K WSRR + KI +GD+ IAEVVRDL + D + Sbjct: 61 DIVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEH 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKA 187 S E+++ A + + EIA +SE E L++VNL + + +E ++ Sbjct: 121 GLSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLGYAEPQEGDAEHHTEVPEEP 180 Query: 188 A 188 A Sbjct: 181 A 181 >gi|229019949|ref|ZP_04176742.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] gi|229026183|ref|ZP_04182547.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228735111|gb|EEL85742.1| Transcriptional regulator, CarD [Bacillus cereus AH1272] gi|228741333|gb|EEL91540.1| Transcriptional regulator, CarD [Bacillus cereus AH1273] Length = 164 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 81/157 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIINKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A ++ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 163 >gi|224368792|ref|YP_002602953.1| transcriptional regulator (CarD family protein) [Desulfobacterium autotrophicum HRM2] gi|223691508|gb|ACN14791.1| transcriptional regulator (CarD family protein) [Desulfobacterium autotrophicum HRM2] Length = 153 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80 VYPAHGVG I I+ +E+ G + F+++ + M + +P +G+R++ + V Sbjct: 3 VYPAHGVGCIESIESKEINGENMNFYMMKIVDNGMVIMIPTANVESVGLREVIKQKDVPE 62 Query: 81 ALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139 ++++ K + + W+RR +EY KI +G + IAEV RDL + + + S+ ER+L Sbjct: 63 VYRIMQEKGPDLDKQTWNRRYREYMDKIKTGSIYDIAEVFRDLFQLKLEKDLSFGERKLL 122 Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ++A N +V+E++ ++ E + IE + Sbjct: 123 DTAQNLLVQELSMAKNMDEAAMMTEIEQLFN 153 >gi|229099195|ref|ZP_04230127.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] gi|229105347|ref|ZP_04235994.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|229118208|ref|ZP_04247566.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228665255|gb|EEL20739.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3] gi|228678059|gb|EEL32289.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28] gi|228684176|gb|EEL38122.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29] Length = 164 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 80/157 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLNDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQDVSEHQATEFLQETIN 163 >gi|206969561|ref|ZP_03230515.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228954994|ref|ZP_04117011.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147285|ref|ZP_04275636.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|229181033|ref|ZP_04308368.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|296505181|ref|YP_003666881.1| CarD family transcriptional regulator [Bacillus thuringiensis BMB171] gi|206735249|gb|EDZ52417.1| transcriptional regulator, CarD family [Bacillus cereus AH1134] gi|228602590|gb|EEK60076.1| Transcriptional regulator, CarD [Bacillus cereus 172560W] gi|228636186|gb|EEK92665.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24] gi|228804721|gb|EEM51323.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|296326233|gb|ADH09161.1| CarD family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 164 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +++E +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163 >gi|229048423|ref|ZP_04193990.1| Transcriptional regulator, CarD [Bacillus cereus AH676] gi|228722938|gb|EEL74316.1| Transcriptional regulator, CarD [Bacillus cereus AH676] Length = 164 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +++E +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163 >gi|30022787|ref|NP_834418.1| CarD family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229129995|ref|ZP_04258959.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] gi|29898346|gb|AAP11619.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579] gi|228653439|gb|EEL09313.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4] Length = 164 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163 >gi|228941895|ref|ZP_04104439.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974826|ref|ZP_04135389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981418|ref|ZP_04141717.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228778301|gb|EEM26569.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407] gi|228784886|gb|EEM32902.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817728|gb|EEM63809.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942500|gb|AEA18396.1| CarD family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 164 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMNQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +++E +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163 >gi|78045099|ref|YP_361149.1| CarD family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997214|gb|ABB16113.1| transcriptional regulator, CarD family [Carboxydothermus hydrogenoformans Z-2901] Length = 160 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 87/158 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G +VYP HG G I EI+E+ A ++++V++F M L +PV K +G+R + Sbjct: 1 MFKVGAKVVYPMHGAGIIREIEERLAADRVMKYYVLSFWATNMILWLPVEKVERVGLRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE+ +++ + W++R + + KI S D++AIA+VVRDL R + S Sbjct: 61 IGKDMVEKVFAVLKEGEEKIHSNWNKRYKNHVDKIKSNDILAIADVVRDLRRREKVKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E++L ESA +V E+ V E + + +IE ++ Sbjct: 121 TGEKKLLESARQILVSELILVLEEDEEKVLAMIEEAIT 158 >gi|258591297|emb|CBE67594.1| CarD-like transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 162 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 82/159 (51%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 +RTG +VYP HGVG I I+ +EV G F+V+ + M + VP A +G+R+ Sbjct: 1 MMYRTGTKVVYPTHGVGWIEAIENKEVGGGPQAFYVVRIIGNGMTILVPTKNAKRVGLRE 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + EA + + L +++ + W+RR ++ +I +G L +A V+R L + Sbjct: 61 VIEASEIPKILAILKKNDLEISSNWNRRFKDNLERIRTGSLFEVALVLRKLVLLQKERSL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S+ E+ + E+ +V EI+ + I + A L+E + Sbjct: 121 SFGEKTMLENVRRLIVSEISHASGIDQERAKVLVEQAVG 159 >gi|28493316|ref|NP_787477.1| transcriptional regulator [Tropheryma whipplei str. Twist] gi|28572573|ref|NP_789353.1| transcription regulator CarD [Tropheryma whipplei TW08/27] gi|28410705|emb|CAD67091.1| putative CarD-family transcriptional regulator [Tropheryma whipplei TW08/27] gi|28476357|gb|AAO44446.1| transcriptional regulator [Tropheryma whipplei str. Twist] Length = 160 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 84/160 (52%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG +I EIK++ + G ++ + + + ++VP K +G+R Sbjct: 1 MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRG 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ R ++++R + T WSRR + KI SGD+ + EVVRDL R + Sbjct: 61 VIDSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S E+++ A +V E+A ++ +A L++ L+ Sbjct: 121 SAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE 160 >gi|228923471|ref|ZP_04086756.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836197|gb|EEM81553.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 83/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L+ AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLLDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163 >gi|38234538|ref|NP_940305.1| putative CarD-like transcriptional factor [Corynebacterium diphtheriae NCTC 13129] gi|38200801|emb|CAE50505.1| Putative CarD-like transcriptional factor [Corynebacterium diphtheriae] Length = 193 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP A +G+R Sbjct: 1 MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ +R + WSRR + ++ SGD+ +AEVVRDL R D Sbjct: 61 VVDDDGLQKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 S E+++ A +V E+A + E + E L+ + E+ +EN+ Sbjct: 121 SAGEKRMLAKARQVLVGELALAENKDEKQ----TEEILAQVDATIERHRAENK 169 >gi|218235392|ref|YP_002369513.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228960989|ref|ZP_04122619.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] gi|229112178|ref|ZP_04241720.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|229152915|ref|ZP_04281097.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|218163349|gb|ACK63341.1| transcriptional regulator, CarD family [Bacillus cereus B4264] gi|228630528|gb|EEK87175.1| Transcriptional regulator, CarD [Bacillus cereus m1550] gi|228671294|gb|EEL26596.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15] gi|228798706|gb|EEM45689.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar pakistani str. T13001] Length = 164 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163 >gi|304439404|ref|ZP_07399316.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372186|gb|EFM25780.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 160 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ +VYP HG G I +I+++E+ G ++++ +M + VPV +A +IG+R + Sbjct: 1 MYSIGDKVVYPMHGAGVIVDIEKKEILGEIRNYYILKMPIQEMKVMVPVEQAEEIGVRPI 60 Query: 73 SEAHFVERALKLVRGKAR-VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ L+ ++ + + W+RR + KI +GD++ IA+VVR L R D++ Sbjct: 61 YGTEEMKEVLETLQSDKKLDMPSNWNRRFRFSTEKIKTGDIVEIAKVVRCLVRMDNEKNL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSIS 157 S ER+L +A +V E+A + + Sbjct: 121 STGERKLLNNAKKIIVSEMALIYEKT 146 >gi|228910571|ref|ZP_04074385.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] gi|228849135|gb|EEM93975.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200] Length = 164 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGEADPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +++E +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163 >gi|75760847|ref|ZP_00740862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899872|ref|YP_002448283.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228903236|ref|ZP_04067369.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] gi|228967819|ref|ZP_04128833.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|229072221|ref|ZP_04205428.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|229076225|ref|ZP_04209192.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|229081972|ref|ZP_04214463.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|229193002|ref|ZP_04319958.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|74491661|gb|EAO54862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545825|gb|ACK98219.1| transcriptional regulator, CarD family [Bacillus cereus G9842] gi|228590449|gb|EEK48312.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876] gi|228701349|gb|EEL53844.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2] gi|228706874|gb|EEL59080.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18] gi|228710878|gb|EEL62846.1| Transcriptional regulator, CarD [Bacillus cereus F65185] gi|228791869|gb|EEM39457.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar sotto str. T04001] gi|228856410|gb|EEN00937.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222] Length = 164 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 82/157 (52%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMEQLKKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V +++E +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163 >gi|297568584|ref|YP_003689928.1| transcriptional regulator, CarD family [Desulfurivibrio alkaliphilus AHT2] gi|296924499|gb|ADH85309.1| transcriptional regulator, CarD family [Desulfurivibrio alkaliphilus AHT2] Length = 165 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 A + FR G+ VYPAHGVG I I+ ++V ++ F+V+ F + M + +P Sbjct: 1 MSATLEMFRVGDMAVYPAHGVGKIESIESRKVGELEQSFYVMRFIESNMTVMIPTTTCDT 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARV-KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R + A V++ ++ + + W++R +EY KI +G + IA V+RDL Sbjct: 61 VGLRNIISADDVQQVFAILNQRDVETESQPWNQRYREYTNKIKTGSIFEIAAVLRDLLLL 120 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + S+ ER++ ++A +V+EIA I E + I+ S Sbjct: 121 RGDKDLSFGERKMVDTAKTLLVKEIALAKQIQEEQVAEHIDRIFS 165 >gi|303238352|ref|ZP_07324887.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus CD2] gi|302594056|gb|EFL63769.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus CD2] Length = 159 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 79/158 (50%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G I I+E+E+ G K ++V+ M + +P IG+R++ Sbjct: 1 MYNVGDRIVYPMHGAGIIESIEEREILGSKQSYYVVRIPIGDMKVMIPTKNVTGIGIREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +R ++ + + W++R +E KI SG++ +A+VVR L + + S Sbjct: 61 ISERDADRVFSVLGAENNSANSNWNKRYRENMVKIKSGNIYEVADVVRSLMVREKEKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER++ SA ++ E+ +++ E +I L+ Sbjct: 121 TGERKMLSSAKQILISELVLAKNMNAIEIEKIISKFLN 158 >gi|229163710|ref|ZP_04291657.1| Transcriptional regulator, CarD [Bacillus cereus R309803] gi|228619772|gb|EEK76651.1| Transcriptional regulator, CarD [Bacillus cereus R309803] Length = 164 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 81/157 (51%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTLRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + + L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLNDILLEFQQGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 SE+Q+ ++A M+ E+A V ++SE +A ++ ++ Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163 >gi|56962605|ref|YP_174331.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] gi|56908843|dbj|BAD63370.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] Length = 153 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 78/152 (51%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HG G I I+E ++ K ++++I + M + +P K ++ +R + Sbjct: 1 MFQIGDNIVYPMHGAGVIEAIEEIDLLEEKQQYYIIKMSINNMKVMIPTSKIVNSRIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + + + + W +R + KI G++ AEVVRDL R + + Sbjct: 61 TDILAINHIIHIFQHGESDTLLPWKQRYKVNADKIKMGEMQEGAEVVRDLRRIKKEKTLN 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE++L ++A ++ E+ V I++ + + Sbjct: 121 TSEKELLDNAYEFLLSELEVVKGITDRQIKSF 152 >gi|227824939|ref|ZP_03989771.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226905438|gb|EEH91356.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 162 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 85/162 (52%), Gaps = 2/162 (1%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M F G+ ++YP HG I +++++ + G ++++FV M + VP G +G+ Sbjct: 1 MAYMFTVGDKVLYPMHGAAVIRDVEQKVIDGRQIDYFVFDMLLSNMKVMVPAGNVEKVGI 60 Query: 70 RKLSEAHFVERALKLVRGKA--RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 R + + + + ++++ + R+KR W+RR Y K+ +G + +A+VVR L + Sbjct: 61 RPIVDKSVMPKVEEVLKARPENRMKRITWNRRYNMYIDKMKTGSIFEVADVVRTLAVQEE 120 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + S ER+L +A ++ E+ V S+ E ++ +E + Sbjct: 121 DKKLSTGERRLLSTAKQILLSEVMLVESVDEEKSEAWLEKFI 162 >gi|157692393|ref|YP_001486855.1| transcription factor CarD [Bacillus pumilus SAFR-032] gi|157681151|gb|ABV62295.1| possible transcription factor CarD [Bacillus pumilus SAFR-032] Length = 158 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R + Sbjct: 1 MFQIGDKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMP--NMQMMIPRGRINQLGIRPV 58 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + W +R E K+ +G + A+VV+DL R + + + Sbjct: 59 ADQATLKVVMNNFAEETNDDTLTWKQRYDENLKKLKTGAIEDGADVVKDLMRRNQKKALN 118 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SE+++ E A +V EI+ +S+ E ++ +E L Sbjct: 119 SSEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155 >gi|46579983|ref|YP_010791.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120602605|ref|YP_967005.1| CarD family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46449399|gb|AAS96050.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str. Hildenborough] gi|120562834|gb|ABM28578.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris DP4] gi|311234019|gb|ADP86873.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris RCH1] Length = 171 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F E +VYPA GVG + I+ QEV G+ EF+++ + + L VPV A ++G+R L Sbjct: 1 MFSPDELVVYPAQGVGKVERIERQEVGGVTAEFYIVRILTNNVTLMVPVKNAANVGLRPL 60 Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + + W+RR +EY K+ S DL +A V+R+L Sbjct: 61 CSTERANEIMLSLEDRSGFTGYTGQNWNRRYREYSEKLKSPDLGDVAYVLRELLLIGKDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E S+ ER+L E A++ +V E++ V +++ E IE Sbjct: 121 ELSFGERRLLEQAMSLLVVELSHVQGLTQEEVRANIE 157 >gi|301167408|emb|CBW26990.1| putative transcriptional regulator [Bacteriovorax marinus SJ] Length = 176 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G++ V P HGVG + +I+E+EV G KL F++I + M + VP + G+R+L Sbjct: 20 MFNIGDYAVCPGHGVGQVCDIEEKEVGGDKLSFYIIKIIANGMTVMVPTNS--ENGIREL 77 Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + +L++ V + W+RR +EY KI +G L+ IA+V+R L ++ Sbjct: 78 VGNEEINEVYELLQDHDVEVDNSTWNRRYREYMTKIKTGSLLEIADVLRALFLLRAKKNL 137 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S+ E+++ E + + +EI+ N E I+ + Sbjct: 138 SFGEKKMLEQCRDLLAQEISLSNGNDTKEISTTIDDYFN 176 >gi|116624660|ref|YP_826816.1| CarD family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227822|gb|ABJ86531.1| transcriptional regulator, CarD family [Candidatus Solibacter usitatus Ellin6076] Length = 170 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 79/162 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP GVG I I + +F+++ F M + VP A +IG+R+ Sbjct: 2 MTFQIGDKVVYPNQGVGIIENISIRSFGSAFEKFYLLRFGCSSMTVLVPFSNAANIGLRR 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +++ + R L + W R +E K+ SGDL+ AEV + L + Sbjct: 62 VTKDREISRILSYLATGWCPLNPDWKVRFKENTDKMQSGDLLKAAEVFKVLLQLHVDKPL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S+ E+++ + A + +V EI+ ++ E A+ L++ L+ Sbjct: 122 SFREKKMLDRARHMLVSEISIARNVPEIHAVGLMQRALAKAG 163 >gi|189183652|ref|YP_001937437.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda] gi|189180423|dbj|BAG40203.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda] Length = 169 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 105/164 (64%), Gaps = 1/164 (0%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 ++ F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G Sbjct: 4 QQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSASG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R +S ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL++ + Sbjct: 64 LRAISYKTDTDKIYKILCSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKNA-E 122 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++SYSER +YESA+ R+ RE+A + S+ E I + L ++ Sbjct: 123 VDRSYSERTIYESAITRLARELAILESLKYEEIIEKLTEILKNR 166 >gi|283853058|ref|ZP_06370314.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B] gi|283571525|gb|EFC19529.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B] Length = 170 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A + ++ ++ ++ W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CTAEEGQAIIETLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLGDVAYVLKELLLIGQNK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV----NLSSKSSK 175 E S+ ER+L E A + + E+A + E ++I L K + Sbjct: 121 ELSFGERRLLEQATSLLTLELALAMDKEQQEIKDIINEIFADVLQPKPEE 170 >gi|328952413|ref|YP_004369747.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans DSM 11109] gi|328452737|gb|AEB08566.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans DSM 11109] Length = 169 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 1/164 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ VYPAHGVG I I+++E++G F+++ + M + +P A ++G+R + Sbjct: 1 MFQLGDLAVYPAHGVGVIESIEDKEISGNHQTFYIMRILDNNMIIMIPTHNASNVGLRGI 60 Query: 73 SEAHFVERALKLVRGKAR-VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + V +++ K R V+ W+RR ++Y KI +G L +AEV+RDL + Sbjct: 61 IDGQAVTTIYEILAKKDRVVEHQTWNRRYRDYMEKIKTGSLFHVAEVLRDLTLLKLDKDL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 S+ ER++ ++A N +V+E++ E + I L + + Sbjct: 121 SFGERKMLDTAKNLLVKELSIAEKKEEDKIEQKINSLLELTAME 164 >gi|297587316|ref|ZP_06945961.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575297|gb|EFH94016.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 160 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 86/157 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G ITE++ +EV G+K +++++ +M + +PV K D+G+R + Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYYILQMPMGEMKISIPVDKINDMGIRFV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ + +++ + W++R +E K+ +GD+ A V + L+ D S Sbjct: 61 AQEEIIHSLRDILKNSEVDFPSNWNKRYKENLEKLRTGDIKETAIVYKGLYELDCSKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+++ ++ ++ EIA+ +I +A +++ + Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNIKPSKAESMVNELI 157 >gi|284048085|ref|YP_003398424.1| transcriptional regulator, CarD family [Acidaminococcus fermentans DSM 20731] gi|283952306|gb|ADB47109.1| transcriptional regulator, CarD family [Acidaminococcus fermentans DSM 20731] Length = 159 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ ++YP HG I ++++++ G + +FV+ M + +P IG+R + Sbjct: 1 MFTVGDKVLYPMHGAAVIKNVEQKQIDGHPVNYFVLKMLLSDMKVLIPEVNVDKIGLRPI 60 Query: 73 SEAHFVERALKLVRGKAR--VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + +++ + +KR W+RR Y K+ +GD+ +A+VVR L +++ + Sbjct: 61 VNKAILPKVEDVLKARPENKMKRITWNRRYNMYVDKMKTGDIFEVADVVRTLAVQETEKK 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S ER+L +A ++ E V S+ E ++ ++ Sbjct: 121 LSAGERRLLTTAKQILLSEFMLVESVDEEKSEKWLDQ 157 >gi|148284672|ref|YP_001248762.1| putative transcriptional factor regulator [Orientia tsutsugamushi str. Boryong] gi|146740111|emb|CAM80284.1| putative transcriptional factor regulator [Orientia tsutsugamushi str. Boryong] Length = 169 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 105/164 (64%), Gaps = 1/164 (0%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 ++ F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G Sbjct: 4 QQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSG 63 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R +S ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL++ + Sbjct: 64 LRAISYKTDTDKIYKILSSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKNA-E 122 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++SYSER +YESA+ R+ RE+A + S+ E I + L ++ Sbjct: 123 VDRSYSERIIYESAITRLARELAILESVKYEEIIEKLTEILKNR 166 >gi|315924877|ref|ZP_07921094.1| CarD family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621776|gb|EFV01740.1| CarD family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 159 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 85/158 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + G+ IVYP HG G I I+E ++ ++ + + M + +PV KA ++G+R++ Sbjct: 1 MYNIGDKIVYPMHGAGVIKNIQEMDIFEKTQMYYKVTIAAEGMEILIPVDKAEEVGLREI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E L+++ + WS+R Q+ ++ SGD+I +A+V R+L D + S Sbjct: 61 PTHQDLEAMLQVLSQPEDKMTSNWSKRYQDNMDQMKSGDIIDVAKVTRNLMLLDRRKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ++++ +A N ++ E+ ++ + EA +IE ++ Sbjct: 121 SGDKKMLMTAKNFLISEMMLIDGKEKEEACKIIETTVA 158 >gi|134301075|ref|YP_001114571.1| CarD family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053775|gb|ABO51746.1| transcriptional regulator, CarD family [Desulfotomaculum reducens MI-1] Length = 155 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ + YP HG G I I+E+E+ G K ++V+ M + P+ DI +R + Sbjct: 1 MFQIGDKVFYPMHGAGVIEAIEEKEILGNKQLYYVMQIR--NMQVMFPMKS--DIPLRPV 56 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ +A ++R + K+ SGD+ +V+RDL + + Sbjct: 57 VDLDILDVLFTTFNEEALDLTLKPNQRYRSNMNKMKSGDIYQGVQVIRDLILMSKKRTLA 116 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ++ + ++AL ++ E+ V I+E +A++L+ ++ Sbjct: 117 TGDKAMLDNALQILISELVLVKGITEEQAVDLVNGVIN 154 >gi|89893788|ref|YP_517275.1| hypothetical protein DSY1042 [Desulfitobacterium hafniense Y51] gi|219668161|ref|YP_002458596.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333236|dbj|BAE82831.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538421|gb|ACL20160.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 161 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ I YP +G G I IKE+EV G K ++ + K+ + +P+ + DIG+R++ Sbjct: 1 MFQVGDKIFYPLYGAGIIEAIKEKEVLGKKQFYYFLNIPHIKLKIMIPIERTHDIGIREV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQ--EYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + ++ L + + ++R + +KI +GD+ EV+RDL R + Sbjct: 61 VKPDVLQHVLDDLYNGTTDPLSDNNQRYRRDMNKSKIKTGDIYKGTEVIRDLMRKSKVKK 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S ++ + E+AL + E V + + +A++L+ ++ Sbjct: 121 LSAEDKAMLENALQILTSEFIQVRGVCKEQAVHLLNEVIN 160 >gi|317152592|ref|YP_004120640.1| transcription factor carD [Desulfovibrio aespoeensis Aspo-2] gi|316942843|gb|ADU61894.1| transcription factor CarD [Desulfovibrio aespoeensis Aspo-2] Length = 171 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A ++G+R + Sbjct: 1 MFKVNELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAKNVGLRSV 60 Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + ++ + W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CSLRVGQEIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLSDVAYVLKELFLIGRDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E S+ ER+L E A+ + E+A + I + Sbjct: 121 ELSFGERRLLEQAMGLVSMELAYSVDRPQDAVKADINAMFA 161 >gi|302379533|ref|ZP_07268018.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3] gi|302312440|gb|EFK94436.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3] Length = 160 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 87/157 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R + Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E + +++ + + W++R +E K+ GD+ A V + L+ DS S Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAVVYKGLYELDSSKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+++ ++ ++ EIA+ ++ EA +++ + Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAESMVNDLI 157 >gi|169824929|ref|YP_001692540.1| CarD family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831734|dbj|BAG08650.1| transcriptional regulator CarD family [Finegoldia magna ATCC 29328] Length = 160 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 87/157 (55%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R + Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E + +++ + + W++R +E K+ GD+ A V + L+ DS S Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAIVYKGLYELDSSKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+++ ++ ++ EIA+ ++ EA +++ + Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAESMVNDLI 157 >gi|78357172|ref|YP_388621.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219577|gb|ABB38926.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 171 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + ++ Q V G + EF+++ + + L VPV A+++G+R L Sbjct: 1 MFVPDQLVVYPAQGVGKVERLESQVVGGAEAEFYIVRILSNNVTLMVPVKNAVNVGLRAL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A ++ L ++ ++ W+RR +EY K+ SG L +A V+++L Sbjct: 61 CSAEEGQKILDSLQDRSDFTGYTGQNWNRRYREYSEKLKSGSLEDVAYVLKELLLIGKDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 E S+ ER+L E ++ + E+A ++ + IEV Sbjct: 121 ELSFGERRLLEQSMGLITLELAHALDTTQEDVKARIEV 158 >gi|325474975|gb|EGC78161.1| transcriptional regulator [Treponema denticola F0402] Length = 209 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 81/170 (47%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G Sbjct: 2 SKKFVFSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R++ E ALK + W R Q SG ++ VVR L++ Sbjct: 62 IRRIVTKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKT 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 E ER+LY+SA EIAA +++ E I ++L EK Sbjct: 122 KELPIQERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171 >gi|42527792|ref|NP_972890.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] gi|41818620|gb|AAS12809.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 208 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 81/170 (47%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G Sbjct: 2 SKKFVFSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R++ E ALK + W R Q SG ++ VVR L++ Sbjct: 62 IRRIVTKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKT 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 E ER+LY+SA EIAA +++ E I ++L EK Sbjct: 122 KELPIQERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171 >gi|121535694|ref|ZP_01667498.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans Nor1] gi|121305725|gb|EAX46663.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans Nor1] Length = 164 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 68/150 (45%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +VYP HG G + ++E EV G K ++V+ M + +P + G+R + Sbjct: 4 VGDKVVYPMHGAGIVEALEEHEVLGKKQYYYVLTMFYGGMRVMIPQDQVGQSGLRAVVGE 63 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 + + +++ W+RR KI SG ++ +AEVVR+L + + S E Sbjct: 64 TEIAQVKEVLSASPEQDTGNWNRRINNSLTKIKSGSILEVAEVVRNLMKQEVTRRLSTGE 123 Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLI 165 R+L ++A ++ E+ + Sbjct: 124 RRLLDTAKQILISELVLACDKDVDSVEGWV 153 >gi|258404969|ref|YP_003197711.1| transcriptional regulator, CarD family [Desulfohalobium retbaense DSM 5692] gi|257797196|gb|ACV68133.1| transcriptional regulator, CarD family [Desulfohalobium retbaense DSM 5692] Length = 174 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 4/174 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + I+ QE+ G + +F+++ + + L VPV A ++G+R + Sbjct: 1 MFSEKQLVVYPAQGVGEVERIESQEIGGTRADFYIVRILSNNVTLMVPVANAENVGLRSV 60 Query: 73 SEAHFVERALKLVRGKARVK---RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A L+ ++ ++ W+RR +EY K+ SG+L ++ V+++L Sbjct: 61 CGADEGRLVLEGLKDRSDFMGYSGQNWNRRYREYSEKLKSGELDDVSYVLKELILIGRDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 E S+ ER+L E A+ + EIA + IE + K + E+ Sbjct: 121 ELSFGERRLLEQAMTLITMEIAYALGTQQDAVRKEIEEIFADI-LKRPGADEED 173 >gi|218885594|ref|YP_002434915.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756548|gb|ACL07447.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 171 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 3/171 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + ++ Q V G+ +F+++ + + L VPV A ++G+R L Sbjct: 1 MFAQDQLVVYPAQGVGKVERVESQVVGGVATDFYIVRILGNNVTLMVPVRNAANVGLRSL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 L+ +R ++ W+RR +EY K+ SGDL +A V+R+L Sbjct: 61 CAPELGAEILESLRDRSGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLRELLLIGRDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 E S+ ER+L E A+ + E+A V ++ IE EKS Sbjct: 121 ELSFGERRLLEQAMGLITLELACVLDRTQDNVRAEIEEMFQDVLQAREKSE 171 >gi|330994677|ref|ZP_08318600.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1] gi|329758318|gb|EGG74839.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1] Length = 196 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 98/159 (61%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGVDEIAGTKLEMIQISFPGNQMTLRIPLSKARKSGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + E + + + + Sbjct: 158 SERKLFEAAQERFVAEVAVLEGKDPTEVLEKLTEVMKAA 196 >gi|194014646|ref|ZP_03053263.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061] gi|194013672|gb|EDW23237.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061] Length = 157 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R++ Sbjct: 1 MFQIGNKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMP--NMQMMIPRGRINQLGIRQV 58 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + W +R E K+ +G + A+VV+DL R + + + Sbjct: 59 ADQATLKVVMNNFAEETNDDTLTWKQRYDENMKKLKTGAIEDGADVVKDLMRRNQKKALN 118 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 SE+++ E A +V EI+ +S+ E ++ +E L Sbjct: 119 SSEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155 >gi|149919688|ref|ZP_01908166.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] gi|149819459|gb|EDM78889.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] Length = 165 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 1/159 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 Q F G VYPAHGV I ++ + V G L F+ + + + VPV KA + GM Sbjct: 3 AAQRFDIGSTAVYPAHGVADIIGVETKTVGGHDLSFYQLQVRGSGLKIIVPVNKANENGM 62 Query: 70 RKLSEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R L+ ++R +++R + R W+RR + + KI +G + +AEV RDL SQ Sbjct: 63 RPLAGPDAIDRTFQILRDHDVPIDRQTWNRRYRNFMDKIRAGAIEGVAEVYRDLALLRSQ 122 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S+ ER++ +A + +V E+A SE E ++ Sbjct: 123 KTLSHGEREMLRTARDLLVGELAVARETSESEVAEELDS 161 >gi|303234185|ref|ZP_07320831.1| CarD-like protein [Finegoldia magna BVS033A4] gi|302494726|gb|EFL54486.1| CarD-like protein [Finegoldia magna BVS033A4] Length = 160 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 85/157 (54%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R + Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E + +++ + + W++R + K+ GD+ A V + L+ DS S Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKGNLEKLRIGDIKETAVVYKGLYELDSSKGLS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 E+++ ++ ++ EIA+ ++ EA ++ + Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAEKMVNDLI 157 >gi|296332858|ref|ZP_06875318.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673204|ref|YP_003864876.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150138|gb|EFG91027.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411448|gb|ADM36567.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 158 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 81/152 (53%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G++IVYP HGVG I I+E+E+ G K +++VI M + +P K + +R + Sbjct: 6 MFQIGDNIVYPMHGVGIIEAIEEKEILGKKQQYYVIKMTISNMQVMIPTRKILSSSIRPV 65 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 ++ ++ + + + + W +R KI +G++ AEVVRDL R + + Sbjct: 66 TDIRALKHIIHIFQHGESDRLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN 125 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164 SE+++ ++A ++ E+ + I+E + + Sbjct: 126 ASEKKMLDNAYEFLISELEVIKGITENQIKSF 157 >gi|115372710|ref|ZP_01460016.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1] gi|115370191|gb|EAU69120.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1] Length = 361 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 2/180 (1%) Query: 6 KRDAMRQGFR--TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 R M +G + G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K Sbjct: 32 TRGDMPEGLQLSVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAK 91 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 IG+RK++ VE+ +R + W +RA+ ++ G ++ +AEVV+ L Sbjct: 92 VQAIGVRKVAGPAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQ 151 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 ER+LY++A + +V E+AA SI E A + I++ L + K T Sbjct: 152 VLSELRPLPTKERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRTVAE 211 >gi|42523769|ref|NP_969149.1| putative CarD-like transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39575976|emb|CAE80142.1| putative CarD-like transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 164 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F G++ VYP +GV + I+ +E+ G K F+ + + + +P G+R Sbjct: 2 QTFDVGDNAVYPGYGVVKVVSIETKEMLGTKTTFYNMQLVDTGLKIMIPTTNVKSAGLRP 61 Query: 72 LSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + R + +++ K ++ W+RR +EY KI +G + IAEV+RDL + E Sbjct: 62 IISKSEASRVVGILKEKDIKIDNQTWNRRYREYMEKIKTGSVFEIAEVLRDLFLLKADKE 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISE 158 S+ ER++ +SA + +++E+ S E Sbjct: 122 LSFGERKMLDSARSLLLKELTLATSQEE 149 >gi|94967584|ref|YP_589632.1| CarD family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549634|gb|ABF39558.1| transcriptional regulator, CarD family [Candidatus Koribacter versatilis Ellin345] Length = 186 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 2/180 (1%) Query: 7 RDAMRQ--GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 R AM F G+ +VYP HGVG I +I + + + + + + + VP Sbjct: 6 RSAMNNTLSFIVGDKVVYPNHGVGIIEQISSRTIGAAVQKCYWLKIKASSLRVMVPFDSV 65 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +G+R++ + + ++ + W R +E K+ +G L+ +A V++ L Sbjct: 66 HLVGLRRVVRNGEITKIIEYLSDGKCESNHDWKDRFKENSDKMRTGSLMEVAGVLKSLLL 125 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 S+ E+++ E A +V E+A S EPE L+ L + +++S + Sbjct: 126 LGQSKPLSFREKKMLERARYLLVSELAMAKSCEEPEVEELLGRALQKCKLRFPEASSIAE 185 >gi|332298572|ref|YP_004440494.1| transcriptional regulator, CarD family [Treponema brennaborense DSM 12168] gi|332181675|gb|AEE17363.1| transcriptional regulator, CarD family [Treponema brennaborense DSM 12168] Length = 217 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 79/181 (43%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M + + F + IVYP+ GVG ITEI E++ L ++VI + M + VP Sbjct: 1 MVYYMTMSDTKMTFEVNQKIVYPSQGVGKITEITEKKFKDNVLPYYVIYLEVSDMTVMVP 60 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 V + ++G+R + +A++++ + + W R Q + G + IA +VR Sbjct: 61 VNRVEELGIRAIVSQQEALQAIEMMGEEVEPVTSDWKLRYQMNLDLLKKGSVSDIATIVR 120 Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 L+ E ER+LY+SA + EI+ + E L+ L + Sbjct: 121 CLYHRSKVKELPILERKLYDSAKKLLEDEISFALEKTPKEVETLLLAKLEPLGLLRDSKH 180 Query: 181 S 181 S Sbjct: 181 S 181 >gi|256828487|ref|YP_003157215.1| CarD family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577663|gb|ACU88799.1| transcriptional regulator, CarD family [Desulfomicrobium baculatum DSM 4028] Length = 176 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F E +VYPA GVG + I+ QE+ G+ E ++ + + L VPV A ++G+R + Sbjct: 1 MFSVDELVVYPAQGVGKVERIETQEIGGVATELIIVRILSNNVTLMVPVKNARNVGLRGV 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + ++ + W+RR +EY K+ S DL +A V+++L Sbjct: 61 YTPEQADEIRVYLQDRTDFTGYSGQNWNRRYREYSEKLKSSDLRDVAYVLKELILIGKDK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E S+ ER+L E A+ + E++ + E IE + Sbjct: 121 ELSFGERRLLEQAMGLISLELSFALKQDQAEVKKSIEDLFA 161 >gi|15613946|ref|NP_242249.1| transcriptional factor [Bacillus halodurans C-125] gi|10173999|dbj|BAB05102.1| transcriptional factor [Bacillus halodurans C-125] Length = 164 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+H+VYP HG G + +I+E+E+ G +FV+ F + + +P + G+RK+ Sbjct: 1 MFKIGDHVVYPFHGAGVVQDIEEKEILGETHSYFVLHFPLTDIKVMLPKHRIQQSGLRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP--E 130 + V+ + ++ + ++ +++ + + SG +I A ++ L + ++ Sbjct: 61 IDQSDVDHLIDALQKGPETPLST-NQFSKDTENLLKSGSIIDAAHLISGLAKKQAERTNG 119 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +R + A + E+ V +ISE +A I+ +L S S Sbjct: 120 LHIQDRNFLQKAKQFIASELIVVKNISEEQAYAFIDEHLPSPSE 163 >gi|258542109|ref|YP_003187542.1| CarD family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633187|dbj|BAH99162.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-01] gi|256636244|dbj|BAI02213.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-03] gi|256639299|dbj|BAI05261.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-07] gi|256642353|dbj|BAI08308.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-22] gi|256645408|dbj|BAI11356.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-26] gi|256648463|dbj|BAI14404.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-32] gi|256651516|dbj|BAI17450.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654507|dbj|BAI20434.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO 3283-12] Length = 196 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 98/159 (61%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + + E + + + + Sbjct: 158 SERKLFEAAQERFVAEVAVLENKDPTEVLESLTAVMKAA 196 >gi|89894787|ref|YP_518274.1| hypothetical protein DSY2041 [Desulfitobacterium hafniense Y51] gi|89334235|dbj|BAE83830.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 174 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 5/173 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++ Sbjct: 1 MFQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQV 60 Query: 73 SEAHFVERALKLVRGKARVK---RTMWSRRAQE-YDAKINSGDLIAIAEVVRDLHRTDSQ 128 + V+ L+ + +R ++ K+ SGD+ +E++RDL R + Sbjct: 61 VNSEVVDDVLRFFFEGDTDPVMFESN-NRFYRDINKKKMKSGDIYQESEIIRDLTRKSNL 119 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 + + + +AL + EI V I +A+ +++ ++ + EK + Sbjct: 120 HKLGMEDNNMLHTALQLVTSEIVQVKGIEMEKAVEMLQSVINQAKEEKEKQEA 172 >gi|257456307|ref|ZP_05621504.1| transcription factor [Treponema vincentii ATCC 35580] gi|257446393|gb|EEV21439.1| transcription factor [Treponema vincentii ATCC 35580] Length = 198 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 2/175 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F E +VYP GVG I EI E++ L ++VI FD+ M + VP KA ++G+R + Sbjct: 5 SFTVKERVVYPGQGVGEIVEISEKKFKDEMLTYYVIYFDESDMTVLVPAMKAAELGIRTI 64 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A + AL + K + W R Q +G ++ A +VR L+ E Sbjct: 65 VSADEAQAALAFLSEKFDPIPSDWKMRYQMNLDLFKTGSILDNASIVRSLYHRSKIKELP 124 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS--SKSSKTEKSTSENQD 185 ER+LY+SA E++ + E +I L SK++ K + D Sbjct: 125 IQERKLYDSAYRIFYDELSYALQKPKSEIEAMIHSYLEVLSKNAPAGKQEQLDDD 179 >gi|30264785|ref|NP_847162.1| CarD family transcriptional regulator [Bacillus anthracis str. Ames] gi|47778348|ref|YP_021614.2| CarD family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|165869635|ref|ZP_02214293.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167638161|ref|ZP_02396439.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170705571|ref|ZP_02896035.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] gi|254725089|ref|ZP_05186872.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. A1055] gi|254736826|ref|ZP_05194532.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Western North America USA6153] gi|254754539|ref|ZP_05206574.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Vollum] gi|254757371|ref|ZP_05209398.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Australia 94] gi|30259460|gb|AAP28648.1| transcriptional regulator, CarD family [Bacillus anthracis str. Ames] gi|47552053|gb|AAT34089.2| transcriptional regulator, CarD family [Bacillus anthracis str. 'Ames Ancestor'] gi|164714464|gb|EDR19983.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0488] gi|167513978|gb|EDR89346.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0193] gi|170129696|gb|EDS98559.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0389] Length = 148 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 68/136 (50%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120 Query: 133 YSERQLYESALNRMVR 148 SE+Q+ ++A M R Sbjct: 121 ASEKQMLDNARKMMFR 136 >gi|219669222|ref|YP_002459657.1| CarD family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539482|gb|ACL21221.1| transcriptional regulator, CarD family [Desulfitobacterium hafniense DCB-2] Length = 174 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 89/173 (51%), Gaps = 5/173 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++ Sbjct: 1 MFQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQV 60 Query: 73 SEAHFVERALKLVRGKARVK---RTMWSRRAQE-YDAKINSGDLIAIAEVVRDLHRTDSQ 128 + V+ L+ + +R ++ K+ SGD+ +E++RDL R + Sbjct: 61 VNSEVVDDVLRFFFEGDTDPVMFESN-NRFYRDINKKKMKSGDIYQESEIIRDLTRKSNL 119 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 + + + +AL + EI V + +A+ +++ ++ + EK + Sbjct: 120 HKLGMEDNNMLHTALQLVTSEIVQVKGVEMEKAVEMLQSVINQAKDEKEKQEA 172 >gi|320538285|ref|ZP_08038170.1| CarD-like transcriptional regulator [Treponema phagedenis F0421] gi|320144861|gb|EFW36592.1| CarD-like transcriptional regulator [Treponema phagedenis F0421] Length = 205 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + + F + +VYP GVG ITEI ++E L+++VI + M + VPV +A ++G Sbjct: 2 SKKFTFAVNQKVVYPGQGVGEITEICKKEFKEEMLQYYVIYLEDSDMTMMVPVMRAEELG 61 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R + E AL + + W R Q SG ++ + +VR L+ Sbjct: 62 IRTIVSKKDAESALDFLSKEVEQGPLDWKMRYQMNLDLFKSGGVLDNSTIVRSLYHRSKI 121 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 E ER+LY+SA EI+A + + E +LI L Sbjct: 122 KELPIQERKLYDSAYRIFEDEISAALGLPQNEIKSLIHTYLEK 164 >gi|254687524|ref|ZP_05151380.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. CNEVA-9066] gi|254741862|ref|ZP_05199549.1| transcriptional regulator, CarD family protein [Bacillus anthracis str. Kruger B] Length = 146 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 66/134 (49%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120 Query: 133 YSERQLYESALNRM 146 SE+Q+ ++A Sbjct: 121 ASEKQMLDNARKMF 134 >gi|329114138|ref|ZP_08242900.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001] gi|326696214|gb|EGE47893.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001] Length = 196 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 97/159 (61%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + E + + + + Sbjct: 158 SERKLFEAAQERFVAEVAVLEKKDPTEVLESLTAVMKAA 196 >gi|49187604|ref|YP_030857.1| CarD family transcriptional regulator [Bacillus anthracis str. Sterne] gi|65322084|ref|ZP_00395043.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Bacillus anthracis str. A2012] gi|177651210|ref|ZP_02934041.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190568329|ref|ZP_03021237.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|227817506|ref|YP_002817515.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] gi|49181531|gb|AAT56907.1| transcriptional regulator, CarD family [Bacillus anthracis str. Sterne] gi|172083036|gb|EDT68098.1| transcriptional regulator, CarD family [Bacillus anthracis str. A0174] gi|190560585|gb|EDV14562.1| transcriptional regulator, CarD family [Bacillus anthracis Tsiankovskii-I] gi|227003355|gb|ACP13098.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC 684] Length = 153 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 68/135 (50%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R + Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ L + W +R K+ +G+L AEVVRDL R + + + Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126 Query: 134 SERQLYESALNRMVR 148 SE+Q+ ++A M R Sbjct: 127 SEKQMLDNARKMMFR 141 >gi|114328507|ref|YP_745664.1| carD-like transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316681|gb|ABI62741.1| carD-like transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 216 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 1/164 (0%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T Q A +Q F+TG+ +VYP HGVG + + Q+VAG K+E I+F +++M +++P Sbjct: 18 TAAQSSPAAKQ-FKTGDAVVYPGHGVGRVDHVGMQDVAGHKIEMIQISFAENQMTIRLPA 76 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 K G+RKLS E+A+ + G+ R+ + MWS+RAQEY A+INSGDL+A+AE++RD Sbjct: 77 AKVATTGLRKLSSKADAEKAIAALSGRPRISKVMWSKRAQEYQARINSGDLLALAELLRD 136 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 L R + S+SERQ++E+AL+R EIA V + + + Sbjct: 137 LRRNAGSQDGSFSERQIFETALDRFASEIATVRGEDKADTSQQL 180 >gi|302340584|ref|YP_003805790.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM 11293] gi|301637769|gb|ADK83196.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM 11293] Length = 171 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 77/160 (48%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ +H+VYP GVG IT+I+E+ + G K ++VI + M + +P K + G+R Sbjct: 11 PAFKVNQHVVYPLQGVGIITDIQERVLKGKKTLYYVIYLELSDMTVMIPTDKTDERGIRA 70 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + E+AL+L+ + W R Q + SG + IA VVR L+ E Sbjct: 71 IVPKEEAEKALQLISEEYEPVTADWKMRYQMNLDLLRSGSINDIATVVRALYHRSKVKEL 130 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 ER+LY+ A+ ++ E+ + + LI L S Sbjct: 131 PIQERKLYDDAMKILIDEVTCSLGKKKSDVEELIFERLES 170 >gi|94264420|ref|ZP_01288210.1| Transcription factor CarD [delta proteobacterium MLMS-1] gi|93455177|gb|EAT05395.1| Transcription factor CarD [delta proteobacterium MLMS-1] Length = 166 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 D F+ G+ VYPAHGVG I I+ ++V ++ F+VI + M + +P + Sbjct: 1 MDVALDTFQVGDMAVYPAHGVGRIESIESRQVGELEQSFYVIRIVESNMTVMIPTKSCNN 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVK-RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +G+R + V++ ++ + W++R +EY +I +G + IA V+RDL Sbjct: 61 VGLRNIICPGDVKQVFAILGERGLEMVSQPWNQRYREYTNRIKTGSVFEIAAVLRDLLLL 120 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + E S+ ER++ E+A +++EIA E + I+ SS Sbjct: 121 RADKELSFGERKMVETARGLLIKEIALATDNDEEQVAQRIDRIFSS 166 >gi|328949054|ref|YP_004366391.1| CarD family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449378|gb|AEB15094.1| transcriptional regulator, CarD family [Treponema succinifaciens DSM 2489] Length = 206 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 75/169 (44%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + F + +VYP+ GVG ITEI +++ ++ I + M + VPV ++ D+G+R Sbjct: 5 KTEFSVNQKVVYPSQGVGKITEIFKKDFNNEPTYYYKIYLEVSDMNVMVPVSRSKDLGIR 64 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + AL + + W R Q + G + IA +VR L+ E Sbjct: 65 AIVSKDEAQTALNSISDDFEPPTSDWKLRYQMNLDLLKKGTIGDIAAIVRCLYHRSKVKE 124 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 ER+LY++A + EIA IS E ++ L K EK Sbjct: 125 LPILERKLYDNAKKLLEDEIAEAFGISNKEVEAMLHEKLEPLGLKIEKK 173 >gi|162147634|ref|YP_001602095.1| CarD family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542263|ref|YP_002274492.1| CarD family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786211|emb|CAP55793.1| Transcriptional regulator, CarD family [Gluconacetobacter diazotrophicus PAl 5] gi|209529940|gb|ACI49877.1| transcriptional regulator, CarD family [Gluconacetobacter diazotrophicus PAl 5] Length = 196 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 97/159 (61%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLAKARKAGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + + + + + Sbjct: 158 SERKLFEAAQERFVAEVAVLEGKEPTAVLEALTAAMKAA 196 >gi|296116291|ref|ZP_06834907.1| transcriptional regulator, CarD family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977110|gb|EFG83872.1| transcriptional regulator, CarD family protein [Gluconacetobacter hansenii ATCC 23769] Length = 196 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 97/159 (61%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA G+RK+ Sbjct: 38 FREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLSKARKSGLRKIV 97 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R + S+ Sbjct: 98 SREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSF 157 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + + + + + Sbjct: 158 SERKLFEAAQERFVAEVAVLEGKEPAIVLETLTAVMKAA 196 >gi|262277939|ref|ZP_06055732.1| transcriptional regulator, CarD family [alpha proteobacterium HIMB114] gi|262225042|gb|EEY75501.1| transcriptional regulator, CarD family [alpha proteobacterium HIMB114] Length = 255 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 110/171 (64%), Gaps = 3/171 (1%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 ++ ++ ++ ++++YP HG+G I + + +AG++ + I KDK+ L +P + Sbjct: 82 QETEKRTYKVKDYVIYPKHGIGQIISVDKLTIAGIEASVYKIEITKDKLNLTIPTNQQQH 141 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +R LS + + +AL +++GKA++KRTMWSRRA EY+ KINSGD+ IAEVVRDL++ Sbjct: 142 --LRPLSSLNQINKALSILKGKAKIKRTMWSRRAAEYEQKINSGDIYQIAEVVRDLNKNT 199 Query: 127 SQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 P ++SYSERQL+E A +R++ E++ V ISE E + L K +T Sbjct: 200 DMPVDQSYSERQLFEKAYDRLLGEVSIVLKISEEEGKARLNKALGKKVEET 250 >gi|71083129|ref|YP_265848.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique HTCC1062] gi|71062242|gb|AAZ21245.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique HTCC1062] Length = 299 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K Sbjct: 100 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 158 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 159 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 217 Query: 125 TDSQ-PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 D ++SYSERQL+E A R++ E V IS + ++ L K+ + Sbjct: 218 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGISLEDTQKKLDKALKRNLEGQAKAVAAP 277 Query: 184 Q 184 Sbjct: 278 T 278 >gi|330837541|ref|YP_004412182.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM 17374] gi|329749444|gb|AEC02800.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM 17374] Length = 161 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 75/161 (46%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+HIVYP GVG I I+E+ G ++VI M +K+P+ KA ++G+R Sbjct: 1 MKFSVGDHIVYPLQGVGIIKCIEERNFQGEPQPYYVIHIAISDMIVKIPIAKAAEMGIRA 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + A+ + K W R Q + G + +IA+VV+ L+ E Sbjct: 61 IVPPSEAQEAIDSISSKYDPLPVDWKTRYQMNVDLLQQGSIASIAQVVQALYHRSKVKEL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ER+LY+ AL ++ E++ E E LI L K Sbjct: 121 PVQERKLYDGALRLLIDEVSFSLKRPEDEIEKLIFSRLEKK 161 >gi|91762444|ref|ZP_01264409.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique HTCC1002] gi|91718246|gb|EAS84896.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique HTCC1002] Length = 304 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K Sbjct: 105 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 163 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 164 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 222 Query: 125 TDSQ-PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 D ++SYSERQL+E A R++ E V +S + ++ L K+ + Sbjct: 223 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGVSLEDTQKKLDKALKRNLEGQAKAVAAP 282 Query: 184 Q 184 Sbjct: 283 T 283 >gi|146296815|ref|YP_001180586.1| CarD family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410391|gb|ABP67395.1| transcriptional regulator, CarD family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 173 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 82/163 (50%), Gaps = 4/163 (2%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 ++ ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R Sbjct: 4 QRMYKVGDTIIHPLHGAGEIVEIVEEKVFDNVQKYYVVRILYNGMKILVPVNSAAEIGIR 63 Query: 71 KLSEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 + + +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 64 NVISEEEANKVFELLKDNNFKVDINNCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAARE 123 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ + E +++ L Sbjct: 124 KVKGLSTNEKMMFNNAKQILVSELGLAKGLDMEEVEKMVDSIL 166 >gi|254455735|ref|ZP_05069164.1| CarD-like transcriptional regulator family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082737|gb|EDZ60163.1| CarD-like transcriptional regulator family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 279 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 118/192 (61%), Gaps = 11/192 (5%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K++ ++ ++ +H+VYP HGVG I+E K+ + G+ +E +VI F+KDK VPV K Sbjct: 79 KKQETEKREYKIKDHVVYPKHGVGQISEFKKINIGGIDVETYVIKFEKDKANGMVPVNK- 137 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++ Sbjct: 138 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 196 Query: 125 TDSQ-PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--------SSKSSK 175 D ++SYSERQL+E A R++ E V ++S + ++ L +S Sbjct: 197 GDDLMVDQSYSERQLFEKAYERILSEFQIVLNMSLEDTQKKLDKALKRNLGGQTQPVASP 256 Query: 176 TEKSTSENQDKA 187 + ST+E ++ Sbjct: 257 PKASTTELPEEE 268 >gi|226311543|ref|YP_002771437.1| hypothetical protein BBR47_19560 [Brevibacillus brevis NBRC 100599] gi|226094491|dbj|BAH42933.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 167 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 78/155 (50%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ + YP HG G I ++E+E G K ++V+ ++ + VPV K +G+RK+ Sbjct: 1 MFLVGDKVFYPIHGAGVIEAMEEKEFLGEKHLYYVLNMSLKELNIMVPVEKMSALGIRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 EA +E L + R ++R + + K+ SGD+ +EV+RDL + Sbjct: 61 VEADILENVLAAMLEGQRDTALNAAQRYKLHTEKMKSGDIYEQSEVIRDLVGMSKEKVLG 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 S++ + ++A ++ EI V + +A +++ Sbjct: 121 TSDKVMLDNAQQLLISEIELVKDVDTQQATEMLKQ 155 >gi|310823503|ref|YP_003955861.1| transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1] gi|27651196|emb|CAD60088.1| HMGA-type transcription factor [Stigmatella aurantiaca DW4/3-1] gi|309396575|gb|ADO74034.1| Transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1] Length = 305 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 85/169 (50%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K IG+RK++ Sbjct: 8 SVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAKVQAIGVRKVAG 67 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 VE+ +R + W +RA+ ++ G ++ +AEVV+ L Sbjct: 68 PAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQVLSELRPLPTK 127 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 ER+LY++A + +V E+AA SI E A + I++ L + K T Sbjct: 128 ERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRTVAE 176 >gi|288555760|ref|YP_003427695.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546920|gb|ADC50803.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4] Length = 162 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+H+VYP HG GTI +I+E++V G ++++ F + L +P + G+RK+ Sbjct: 1 MFKVGDHVVYPYHGAGTIQDIEEKDVLGETHSYYILHFPLVDVKLMLPENRIDQSGLRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP--E 130 + +E ++ ++ + S ++E + + SG++I A ++ L + S+ Sbjct: 61 IDQQELEVLVEALQNGPETPPST-SHFSRETENLLKSGNIIDAAHLISSLSKKQSERANG 119 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +R + A + E+ +N ++E +A I+ L Sbjct: 120 LHIQDRNHLQKARQMIASELVLMNDMTEEQAYEFIDSAL 158 >gi|58040444|ref|YP_192408.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58002858|gb|AAW61752.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 184 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 99/159 (62%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 FR G+ IVY AHGVG + +I EVA +E I+F ++M L++P+ KA G+RK+ Sbjct: 26 FREGDSIVYAAHGVGRVDKIGMVEVADTVIEMIQISFPGNQMTLRIPLAKARKAGLRKIV 85 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V++A+ +++GK V + MW+RRA Y KINSGDLI IAEV+RDL R + S+ Sbjct: 86 TRDIVDKAMTVIKGKPHVSKGMWARRAVAYQEKINSGDLIQIAEVLRDLRRNVDSLDGSF 145 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 SER+L+E+A R V E+A + ++ + + + + + Sbjct: 146 SERKLFEAAQERFVAEVAVLENVDPAQVLENLTKTMKAA 184 >gi|303327050|ref|ZP_07357492.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3] gi|302863038|gb|EFL85970.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3] Length = 171 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG I I Q + G+ EF+++ + + L VPV A ++G+R L Sbjct: 1 MFAPDDLVVYPAQGVGKIERIDRQNIGGIACEFYIVRIRANNITLMVPVNNAANVGLRTL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + L+ +RG W+RR +EY ++ S DL + EV+R+L Sbjct: 61 TPEADAQGILETLRGDTDKTIYTGQNWNRRFREYSERLKSPDLAVVTEVLRELLLISRSK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEP 159 E S+ ER+L E A+ + E+A V ++E Sbjct: 121 ELSFGERRLQEQAMGLVTGELAEVLHLTED 150 >gi|220904723|ref|YP_002480035.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869022|gb|ACL49357.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 171 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG I I Q + G+ +F+++ + + L VPV A +G+R L Sbjct: 1 MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTL 60 Query: 73 SEAHFVERALKLVR---GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + ER L+ +R GK W+RR +EY ++ S +L + EV+R+L Sbjct: 61 TTTEEAERILEELRSSTGKVVHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEP 159 E S+ ER+L E A+ + E+A V + E Sbjct: 121 ELSFGERRLQEQAMGLVTGELAEVLKVEED 150 >gi|108760592|ref|YP_633761.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622] gi|1022328|emb|CAA91224.1| carD [Myxococcus xanthus] gi|108464472|gb|ABF89657.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622] Length = 316 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 86/168 (51%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +VYP GV ++ I +EVAG KL F + ++D + VP GK + IG+RK++ A Sbjct: 12 VGDRVVYPNQGVCRVSAIDVKEVAGQKLTFVTMRREEDGAVVMVPEGKVLAIGVRKVASA 71 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 VE +R + W +RA+ ++ G ++ +AEVV+ L E Sbjct: 72 EDVEAIFTFLRSDSDKADLDWKQRARTNLDRMTQGGIMGLAEVVKGLQVLSELRPLPTKE 131 Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 R+LY++A + +V E+AA +E A + I++ L + K T+ Sbjct: 132 RELYDNARHLLVTEVAAALGTAEVNAEDAIDIVLFPPGRERPKRTAAE 179 >gi|325970599|ref|YP_004246790.1| CarD family transcriptional regulator [Spirochaeta sp. Buddy] gi|324025837|gb|ADY12596.1| transcriptional regulator, CarD family [Spirochaeta sp. Buddy] Length = 167 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 75/161 (46%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + F GEH+VYP GVG I I+E+ G ++VI D M + +PV K+ Sbjct: 1 MNLPQEKVQFAVGEHVVYPLQGVGVIKRIEERTFRGAVTMYYVIYLDISDMTVMIPVEKS 60 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 ++G+R + E + A+ + K W R Q + G + +IA+VV+ L+ Sbjct: 61 KEMGIRPIVEQKEAQSAIDSISSKYEPMPVDWKARYQMNVDLLKQGSIASIAKVVQALYH 120 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 E ER+LY++AL ++ E A + E L+ Sbjct: 121 RSKIKELPVQERKLYDNALRLLIDETAFSLKKDKKEIELLV 161 >gi|303246473|ref|ZP_07332752.1| transcriptional regulator, CarD family [Desulfovibrio fructosovorans JJ] gi|302492183|gb|EFL52058.1| transcriptional regulator, CarD family [Desulfovibrio fructosovorans JJ] Length = 170 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGTSADFFIVRILSNNVTLMVPVANAENVGLRPL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A ++ ++ ++ W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CTAEEGLAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQNK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV----NLSSKSSK 175 E S+ ER+L E A + + E+A + E ++I L+ K + Sbjct: 121 ELSFGERRLLEQATSLLTLELALALDKDQQEIKDVINEIFADVLAPKPEE 170 >gi|212703168|ref|ZP_03311296.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098] gi|212673434|gb|EEB33917.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098] Length = 172 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 4/172 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + + +VYPA GVG I I Q + G +F+++ + + L VPV A ++G+R L Sbjct: 1 MFTSEQLVVYPAQGVGQIERIDSQNIGGSACDFYIVRIRANSITLMVPVKNASNVGLRTL 60 Query: 73 SEAHFVERALKLVRGKARV---KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 E + +R + W+RR +EY ++ S DL +A V+R+L Sbjct: 61 VSTKEAEHIWEALRNNPQQTVHTGQNWNRRFREYSERLKSPDLSIVANVLRELLLIGRTK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181 + S+ ER+L E A++ + E+ V + + + + ++L S +K +T+ Sbjct: 121 DLSFGERRLLEQAMSLVTGELGEVLKTEQRDLQSEL-ISLYSPPAKQPATTA 171 >gi|312135061|ref|YP_004002399.1| CarD family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311775112|gb|ADQ04599.1| transcriptional regulator, CarD family [Caldicellulosiruptor owensensis OL] Length = 168 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60 Query: 73 SEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKI 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ + E +++ L Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLDMEEVERMVDSIL 161 >gi|56963460|ref|YP_175191.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] gi|56909703|dbj|BAD64230.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16] Length = 165 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP HG GTI E++E++V G +F++ F + L +P + G+RK+ Sbjct: 3 MFKVGDKVVYPYHGAGTIQEVEEKDVLGETHLYFILHFPLVDITLMLPESRIEQSGLRKV 62 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP--E 130 + +E+ K ++ + S+ +++ + + +G +I A +V L + ++ Sbjct: 63 IPSSDLEKVAKALQNGPDTPPST-SQFSRDTENLLKTGSIIDAAHLVSSLSKKQAERSNG 121 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +R + A + E+ AV SE +A I+ NL Sbjct: 122 LHIQDRHHLQKARQVLASELVAVQDFSEEQAYEFIDNNL 160 >gi|302871953|ref|YP_003840589.1| transcriptional regulator, CarD family [Caldicellulosiruptor obsidiansis OB47] gi|302574812|gb|ADL42603.1| transcriptional regulator, CarD family [Caldicellulosiruptor obsidiansis OB47] Length = 168 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60 Query: 73 SEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKI 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ + E +++ L Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLDMEEVERIVDSIL 161 >gi|311029189|ref|ZP_07707279.1| CarD family transcriptional regulator [Bacillus sp. m3-13] Length = 136 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 75/132 (56%), Gaps = 3/132 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++VYP HGVG I +I+E+E++G K +++VI+ M + +P GK + +R ++ Sbjct: 7 FKIGDNVVYPMHGVGIIKDIEEKEISGEKQQYYVISMLISNMQIMIPTGKILSSSIRPVT 66 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + ++ + + + + W +R + KI +G ++ AEVVRDL R + + Sbjct: 67 DIIALKHIMHIFQHGESDRLLPWKQRFKLNTEKIKTGKILEGAEVVRDLLRMKKEKALNS 126 Query: 134 SERQLYESALNR 145 SE++ +A R Sbjct: 127 SEKK---NAEQR 135 >gi|325291324|ref|YP_004267505.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus DSM 8271] gi|324966725|gb|ADY57504.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus DSM 8271] Length = 162 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 2/162 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ I+YP HG+ I ++++E+ G + +++ K M + +PV KA IG+RK+ Sbjct: 1 MFQVGDKILYPMHGICIIDAVEKKELFGQQELCYILNIQKANMKITIPVDKATKIGVRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRA-QE-YDAKINSGDLIAIAEVVRDLHRTDSQPE 130 +E L ++R +E K +G++ E++RDL R + + Sbjct: 61 VGPEILENILNSFNLGDTDSNIFENQRYCKEINKKKFKTGNINQGTEIIRDLTRKSRRTK 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 + + ++A V E+ V ++ +A+ L++ L+SK Sbjct: 121 LGQDDTNMLDNARRVFVSELMEVKGLALEQAVYLLDEALNSK 162 >gi|326386142|ref|ZP_08207766.1| CarD family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209367|gb|EGD60160.1| CarD family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 151 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 82/150 (54%), Positives = 112/150 (74%) Query: 30 ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA 89 + E++ +E+AGMKLE +V+ F+K++M L+VPV K IGMRKLS + AL ++GK Sbjct: 1 MVELQNEEIAGMKLELYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLKGKP 60 Query: 90 RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVRE 149 +VKRTMWSRRAQEY+AKINSGDL+AIAEV RDL R D QPE+SYSERQ++E+A +R+ RE Sbjct: 61 KVKRTMWSRRAQEYEAKINSGDLVAIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARE 120 Query: 150 IAAVNSISEPEAINLIEVNLSSKSSKTEKS 179 +AA+ EP A+ I V L+ + K ++ Sbjct: 121 LAAMEKTDEPAALKKILVILNEHAPKYYET 150 >gi|330813497|ref|YP_004357736.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp. IMCC9063] gi|327486592|gb|AEA80997.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp. IMCC9063] Length = 273 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 112/172 (65%), Gaps = 3/172 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K+D ++ ++ ++++YP HG+G IT +++ +AG+ + F+ I KDK+ L +P + Sbjct: 100 KKQDNEKRTYKIKDYVIYPKHGIGQITAVEKDTIAGIDINFYKIEITKDKLVLTIPTNQQ 159 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 +R LS V +A+ +++GKA+VKRTMWSRRAQEY+ KINSG++ IAEVVRDL++ Sbjct: 160 GH--LRSLSSTGQVAKAISILKGKAKVKRTMWSRRAQEYEQKINSGEIYQIAEVVRDLNK 217 Query: 125 TDSQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 P ++SYSERQL+E A R++ E+ V +E EA + L K + Sbjct: 218 NTDMPVDQSYSERQLFEKAFERLLGEVTVVLEATEEEAKEKLNKALGKKPEQ 269 >gi|281414624|ref|ZP_06246366.1| transcriptional regulator, CarD family protein [Micrococcus luteus NCTC 2665] Length = 137 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 69/135 (51%) Query: 36 QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM 95 + + G + + + + + ++VP +G+R + +A +E ++++R + + T Sbjct: 2 RTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTN 61 Query: 96 WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNS 155 WSRR + K+ SGD+ +AEVVRDL R D S E+++ A +V E+A Sbjct: 62 WSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVSELALAKK 121 Query: 156 ISEPEAINLIEVNLS 170 ++E EA ++ L Sbjct: 122 VTEEEAEGRLDKVLE 136 >gi|312793424|ref|YP_004026347.1| CarD family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876058|ref|ZP_07736047.1| transcriptional regulator, CarD family [Caldicellulosiruptor lactoaceticus 6A] gi|311797256|gb|EFR13596.1| transcriptional regulator, CarD family [Caldicellulosiruptor lactoaceticus 6A] gi|312180564|gb|ADQ40734.1| transcriptional regulator, CarD family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 168 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60 Query: 73 SEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ I+ E +++ L Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGIAIEEVERMVDSIL 161 >gi|239907582|ref|YP_002954323.1| hypothetical protein DMR_29460 [Desulfovibrio magneticus RS-1] gi|239797448|dbj|BAH76437.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 170 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPL 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 A ++ ++ ++ W+RR +EY K+ SGDL +A V+++L Sbjct: 61 CTAEQGAAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQNK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV----NLSSKSSK 175 E S+ ER+L E A + + E+A + E ++I L K + Sbjct: 121 ELSFGERRLLEQATSLLTLELALALDKDQQEIKDVINEIFADVLQPKPEE 170 >gi|226360810|ref|YP_002778588.1| hypothetical protein ROP_13960 [Rhodococcus opacus B4] gi|226239295|dbj|BAH49643.1| hypothetical protein [Rhodococcus opacus B4] Length = 169 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 70/162 (43%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 G+ +YP HG T+T++ + + E+ + + +++PV KA +G+R Sbjct: 1 MNLNIGDIFLYPHHGSVTVTKLTTRMFKDLPTEYVQFEVAQTGLSIEIPVAKAEALGVRN 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VER ++RG + WSRR + K+ G + ++EV+RDL + Sbjct: 61 AISNDEVERVFDILRGPTVDDPSNWSRRYKANQEKLTVGGIFTVSEVIRDLMTRAQEKPL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 S E++ E A+ ++ E+ + IE S Sbjct: 121 SAGEKRQLEHAMQLVISELVLAMKSDPDDTRRRIEEIYEPAS 162 >gi|312127692|ref|YP_003992566.1| CarD family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777711|gb|ADQ07197.1| transcriptional regulator, CarD family [Caldicellulosiruptor hydrothermalis 108] Length = 168 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60 Query: 73 SEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 61 ISEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ ++ E +++ L Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLAIEEVERMVDSIL 161 >gi|222529236|ref|YP_002573118.1| CarD family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312622517|ref|YP_004024130.1| CarD family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|222456083|gb|ACM60345.1| transcriptional regulator, CarD family [Caldicellulosiruptor bescii DSM 6725] gi|312202984|gb|ADQ46311.1| transcriptional regulator, CarD family [Caldicellulosiruptor kronotskyensis 2002] Length = 168 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R + Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60 Query: 73 SEAHFVERALKLVRG---KARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R +L++ K + +++R +E K+ SG++ + EV++ L + Sbjct: 61 ISEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 S +E+ ++ +A +V E+ ++ E +++ L Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLAIEEVERMVDNIL 161 >gi|239621794|ref|ZP_04664825.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514985|gb|EEQ54852.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 179 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 30 ITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88 + I E+ V G+ E+ ++ + + VPV A +G+R + A V + ++R Sbjct: 1 MEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTP 60 Query: 89 ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPEKSYSERQLYESALNRMV 147 K WSRR + KI +GD+ IAEVVRDL + D + S E+++ A + Sbjct: 61 IIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILT 120 Query: 148 REIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188 EIA I E EA L++VNL + ++ +K + ++AA Sbjct: 121 SEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAA 163 >gi|111018698|ref|YP_701670.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1] gi|110818228|gb|ABG93512.1| probable transcriptional regulator, CarD family protein [Rhodococcus jostii RHA1] Length = 171 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 68/157 (43%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 G+ +YP HG T+T++ + + E+ ++ + +++PV KA IG+R Sbjct: 1 MNLNIGDIFLYPHHGSVTVTKLTTRMFNDLPTEYVQFEVAQNGLSIEIPVAKAESIGVRN 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V R ++RG + WSRR + K+ G + ++EV+RDL Sbjct: 61 AINNDEVGRVFDILRGPTVDDPSNWSRRFKANQEKLTVGGIFTVSEVIRDLMTRSQVKPL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 S E++ E A+ ++ E+ E IE Sbjct: 121 SAGEKRQLEHAMQLVISELVLAMKSDPDETRRRIEAI 157 >gi|225620858|ref|YP_002722116.1| transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225215678|gb|ACN84412.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 194 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 78/163 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 1 MYKLNTYVVYPMYGICKVVGISDNKVNSNLVECYVLECESENITLKVPINRVKEYRIRKI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + L +++ K W R QE + K+ SGD+ EV R L + E S Sbjct: 61 ISKAEADNLLNILQTKPHDIENNWKIRYQENEEKLRSGDIKDTIEVARSLFTRNKLKELS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 SE++LYE A +V EI+ E +++ L + K Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDRDEIEDIVSNALEKSAKK 163 >gi|323141388|ref|ZP_08076279.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067] gi|322414137|gb|EFY04965.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067] Length = 161 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 3/157 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG I +I+ G ++++++ D M + VPV A +G+R + Sbjct: 1 MFAMGDRVVYPLHGGAIIKDIEAHIQDGETVKYYILQMLFDNMTVSVPVENAEKLGLRYI 60 Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + + VK W+RR Q Y KI SG + +A + + L + + Sbjct: 61 GDDETLAIIQNTLHEVPDVQTVKAISWNRRFQLYMQKIKSGSVAEVARIFKILTILERRK 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 + S ER+L S + EI + + +A N +E Sbjct: 121 KISVGERRLLHSTKQILQSEIMLIKDVDAEKAGNWLE 157 >gi|319790303|ref|YP_004151936.1| transcriptional regulator, CarD family [Thermovibrio ammonificans HB-1] gi|317114805|gb|ADU97295.1| transcriptional regulator, CarD family [Thermovibrio ammonificans HB-1] Length = 163 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 70/157 (44%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ + YP HGVG I + + V G ++ ++ I M + +P G+R + Sbjct: 1 MFKVGDKVAYPPHGVGVIESTEVRVVGGKEVTYYRITLLGKNMSILIPEVGLESSGVRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E + K W+ R + ++ +G++ +A VVR+L E S Sbjct: 61 LSEEEIEEVFSYLAEKPTNISEKWTIRHRLNVDRLKTGNIRELATVVRNLSYRSKDKELS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 YSE++++E A +++ EIA + I L Sbjct: 121 YSEKRMFEEAFSKLAEEIALSLGEPVRKVKQRIRKIL 157 >gi|317128335|ref|YP_004094617.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus DSM 2522] gi|315473283|gb|ADU29886.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus DSM 2522] Length = 163 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 3/159 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+H+VYP HG GTI +I+E+++ G KL ++V+ F + + L +P + G+RK+ Sbjct: 1 MFNVGDHVVYPYHGAGTIKDIEEKDILGEKLNYYVVFFPLNHVTLMLPENRIKSSGLRKI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRA-QEYDAKINSGDLIAIAEVVRDLHRTDSQP-- 129 + +E + ++ + +R +E + + SG +I A V+ +L + + Sbjct: 61 IQPKQIEEVVTAMQPTEYASKKEAARPYSKENETLLKSGSIIDAAMVIANLTSKEGERTN 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 +R+ + A +V E+ V +ISE EA I N Sbjct: 121 GLHMEDRKNLDRAKQFIVSELMLVKNISEEEAYQFINEN 159 >gi|325294895|ref|YP_004281409.1| transcriptional regulator, CarD family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065343|gb|ADY73350.1| transcriptional regulator, CarD family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 163 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 72/157 (45%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ + P HGVG + +E+EV G K+ +F I+ M + VP + G+R + Sbjct: 1 MFKIGDKVACPPHGVGIVEGKEEREVGGKKVIYFRISLVGKSMSILVPEESIENSGIRPV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 +E + W+ R + ++ +GD+ +A VVR+L + E S Sbjct: 61 LSEESIEEIFNYLSEIPTNISEKWTVRHRLNVDRLKTGDIKELATVVRNLSYRSKEKELS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 YSE++++E A ++ EIA + I L Sbjct: 121 YSEKRMFEEAFGKLAEEIALSLGEPVKKVKQKIRKIL 157 >gi|187935467|ref|YP_001885252.1| CarD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187723620|gb|ACD24841.1| transcriptional regulator, CarD family [Clostridium botulinum B str. Eklund 17B] Length = 160 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 80/160 (50%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + +R + Sbjct: 1 MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMI 60 Query: 73 SEAHFVERALKLVRGKARVKRTM--WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 ++ + +E L ++ + + R + KI SG L +V +L + Sbjct: 61 NDINTLEDILNHIQDTSDPEELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKA 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + +E+Q+ +A N ++ EI + ISE EA +++ ++S Sbjct: 121 LNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS 160 >gi|297624760|ref|YP_003706194.1| CarD family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165940|gb|ADI15651.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM 17093] Length = 165 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+++VYP+ G G + EI + V G + E+ I+F + M + VP+ K ++G+R Sbjct: 1 MFKVGDNVVYPSQGAGRVDEITTRVVLGERHEYLKISFVRGDMDVLVPLKKGEEVGLRHT 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 V L + T W R + + GD A+A ++ L + D + + Sbjct: 61 VALAEVGELLAAIAHSDLSLPTQWPPRHRAEQDILAGGDAYALARLIGVLAQRDLEKGLA 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 +ER++ E A + E+A V SIS A I+ ++++ Sbjct: 121 ATEREMLEGAKAMLASELAVVQSISLEAAHAQIDETIATQ 160 >gi|300870668|ref|YP_003785539.1| CarD family transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300688367|gb|ADK31038.1| transcriptional regulator, CarD family [Brachyspira pilosicoli 95/1000] Length = 191 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 82/172 (47%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 1 MYKVNSYVVYPMYGICKVIGIADNKVNSSVVECYVLECEGENITLKVPINRVKEYRIRKI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 E L L++ K W R QE + K+ SG++ EV R L + E S Sbjct: 61 ISKAEAENFLNLLQTKPHDIENNWKIRYQENEEKLRSGEIKDTIEVARSLFTRNKLKELS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184 SE++LYE A +V EI+ + +++ L + K + +E + Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDRDQIEDIVSNALEKSAKKFKTKPAEKE 172 >gi|150016433|ref|YP_001308687.1| CarD family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902898|gb|ABR33731.1| transcriptional regulator, CarD family [Clostridium beijerinckii NCIMB 8052] Length = 159 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 1/159 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP G+GT+ I+ + +G E+ ++ + + + +P KA + +RK+ Sbjct: 1 MFLIGDKVVYPMQGIGTVERIENKIFSGNTKEYIIVKITSNNLEIMIPSDKASNSNLRKV 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSR-RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + ++ L + K+ S+ R Q KI SG L AEVV DL + + Sbjct: 61 CDNSTLDHILLTLENKSSEFELASSKERYQANAKKIRSGLLKDSAEVVYDLILMNKKKSL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S SE+QL+ +A +V E++ + +ISE EA + + +NL+ Sbjct: 121 SSSEKQLFNTAYKFLVEEVSVIKNISEIEATSFLNLNLN 159 >gi|296126550|ref|YP_003633802.1| CarD family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018366|gb|ADG71603.1| transcriptional regulator, CarD family [Brachyspira murdochii DSM 12563] Length = 191 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 1/174 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+ Sbjct: 1 MYKLNTYVVYPMYGICKVIGISDSKVNSNLVECYVLECESENITLKVPINRVKEYRIRKI 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + +++ K + W R QE + K+ SG++ EV R L + E S Sbjct: 61 ISKAEADELINVLQTKPQDIENNWKIRYQENEEKLRSGNIKDTIEVARSLFTRNKLKELS 120 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186 SE++LYE A +V EI+ + E +++ L KS+K K+ ++K Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDKDEIEDIVSNALE-KSAKKFKTKPLEKEK 173 >gi|328950177|ref|YP_004367512.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] gi|328450501|gb|AEB11402.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] Length = 163 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +VYPA G G I E+ E+EV G + +++V+ D + VPVG + G+R Sbjct: 1 MFQVGDAVVYPAQGAGRIVEVVEREVMGSRKQYYVVQLLSDAARIMVPVGAVREAGLRPP 60 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 A +ER + + + ++W R +E + SGD +A +V L+R D + Sbjct: 61 LAAAELERLWQAL-AEDLPLPSVWMPRYREEQRLLASGDPFKLAALVGTLYRRDQAKPLA 119 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 SER+LYE AL + E+A S + A + L + + Sbjct: 120 SSERRLYEDALTALASEVALSLSETLEAAKARVMGMLEALTPSP 163 >gi|251781081|ref|ZP_04824001.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085396|gb|EES51286.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R + Sbjct: 1 MFNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPLDRIPNSKLRMI 60 Query: 73 SEAHFVERALKLVRGKARVKRTM--WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 ++ + +E L + + + +R + KI SG L +V +L + Sbjct: 61 NDINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKA 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + +E+Q+ +A ++ EI + ISE EA +++ +++ Sbjct: 121 LNSTEKQILNTAQKFLIDEIRVIKDISENEATKILKSSIN 160 >gi|188590479|ref|YP_001920384.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|188500760|gb|ACD53896.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] Length = 160 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R + Sbjct: 1 MFNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPIDRLPNSKLRMI 60 Query: 73 SEAHFVERALKLVRGKARVKRTM--WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 ++ + +E L + + + +R + KI SG L +V +L + Sbjct: 61 NDINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKA 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + +E+Q+ +A ++ EI + ISE EA +++ +++ Sbjct: 121 LNSTEKQILNTAQKFLIDEIRVIKDISENEATKILKSSIN 160 >gi|23009120|ref|ZP_00050287.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD [Magnetospirillum magnetotacticum MS-1] Length = 143 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 80/133 (60%), Positives = 111/133 (83%), Gaps = 1/133 (0%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114 M L+VP KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI+ Sbjct: 1 MVLRVPTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLIS 60 Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + EVVRDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ KS Sbjct: 61 VTEVVRDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLA-KSP 119 Query: 175 KTEKSTSENQDKA 187 + K+ +E + +A Sbjct: 120 RRAKADAETEAEA 132 >gi|297584628|ref|YP_003700408.1| CarD family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143085|gb|ADH99842.1| transcriptional regulator, CarD family [Bacillus selenitireducens MLS10] Length = 164 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP HG G + +I+E+E+ G KL +FV+ F +++ L +P K + G+R + Sbjct: 1 MFSIGDCVVYPYHGAGRVEKIEEKEILGNKLLYFVVYFPLNQVTLMLPENKIGESGLRPV 60 Query: 73 SEAHFVERALKLVRG--KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP- 129 ++ ++ + +AR ++E +A + +G + A V+ L+ S+ Sbjct: 61 ITKKELDDVVESLCEEVEARETAATAKPYSRENEALLKTGSIYDAARVISLLNAKKSERA 120 Query: 130 -EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 +R+ E A +V E+ +N SE +A I+ N+ Sbjct: 121 NGLHIEDRKNLERATQFLVSEVKNINGFSEEDAKLFIKNNIP 162 >gi|40062705|gb|AAR37618.1| transcriptional regulator, CarD family [uncultured marine bacterium 314] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 6/172 (3%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 ++ + +++VYP HGVG I I + ++ + + F+ + +K+K+ L +P+ Sbjct: 53 PNEKKLYNVKDYVVYPKHGVGKIISIDKAKMGDIDITFYKVLIEKEKLTLSIPIN--QQS 110 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 +R +S + +A +++ K R+KRTMWSRRAQEYD KINSG L +AEVVRDL++ Sbjct: 111 HLRHVSSISQINKAASILKSKPRIKRTMWSRRAQEYDQKINSGKLYELAEVVRDLNKKTD 170 Query: 128 QP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 E+SYSERQL+E A NR+ E+ V +A ++ L K + +K Sbjct: 171 IIAEQSYSERQLFEKAYNRLKSELEVVLG---EKAQQKMDKALKFKENSLQK 219 >gi|297566998|ref|YP_003685970.1| CarD family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851447|gb|ADH64462.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM 9946] Length = 163 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 2/153 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F GE +VYPAHG G I + E+ V G K ++V+ + VPVG +R Sbjct: 1 MFAIGEAVVYPAHGAGRIVGLDERSVLGEKRIYYVLELLGQAHTVMVPVG-VAQACLRPP 59 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VER L ++ + ++ T+W +R +E + + SGD +A + L R S Sbjct: 60 LAGAAVERLLDELKTEVKL-PTIWMQRHREEEKILASGDPYQVAALAGTLFRYQRGKTLS 118 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165 SER ++E AL + E+A + +S EA + Sbjct: 119 LSERGVFEKALAMLASELALIWGVSLDEAKARV 151 >gi|220918135|ref|YP_002493439.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955989|gb|ACL66373.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-1] Length = 404 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 31 KPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVAT 90 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 91 GAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPTK 150 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E++ + A + I+ L + Sbjct: 151 EREQYDNARHLLVHEVSVSLGVPPGLAEDYIDYALMPPAG 190 >gi|153005645|ref|YP_001379970.1| CarD family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029218|gb|ABS26986.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. Fw109-5] Length = 364 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 77/160 (48%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G +VYP GV + ++E+++AG KL+ + ++D + VP K IG+R+++ Sbjct: 30 RPGNRVVYPNQGVCEVVGVEEKDIAGQKLQLVRMRREEDGAAVLVPRNKVPSIGLRRVAT 89 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +E + + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 90 GEQIEGVFHFLAAQFEDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRIRPLPAK 149 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E+A + A + I+ L + Sbjct: 150 EREQYDNARHLLVHEVAVSLGVPPALAEDYIDYALMPPAG 189 >gi|197123346|ref|YP_002135297.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173195|gb|ACG74168.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K] Length = 404 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 31 KPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVAT 90 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 91 GAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPTK 150 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E++ + A + I+ L + Sbjct: 151 EREQYDNARHLLVHEVSVSLGVPPGLAEDYIDYALMPPAG 190 >gi|306841480|ref|ZP_07474180.1| transcriptional regulator [Brucella sp. BO2] gi|306288444|gb|EFM59800.1| transcriptional regulator [Brucella sp. BO2] Length = 136 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 1/133 (0%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114 M LKVPV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+ Sbjct: 1 MRLKVPVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLIS 60 Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 I+EVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K Sbjct: 61 ISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLA-KGP 119 Query: 175 KTEKSTSENQDKA 187 K K+ +E D Sbjct: 120 KRGKAEAELDDDE 132 >gi|187935638|ref|YP_001884929.1| CarD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187723791|gb|ACD25012.1| transcriptional regulator, CarD family [Clostridium botulinum B str. Eklund 17B] Length = 163 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ IVYP+ GVG I I E G ++ I + M L +PV + D+ +R + Sbjct: 1 MFNIGDKIVYPSQGVGIIELIGEMLFKGEIQNYYKIHIFNNNMTLTLPVNRVEDLNIRLV 60 Query: 73 SEAHFVERALKLVRGK----ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 S++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q Sbjct: 61 SDSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVKEQ 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE+ + +V EI+ ++S +A +L+ + ++ Sbjct: 121 HSLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNLAIN 162 >gi|188589570|ref|YP_001920088.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|251778617|ref|ZP_04821537.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499851|gb|ACD52987.1| transcriptional regulator, CarD family [Clostridium botulinum E3 str. Alaska E43] gi|243082932|gb|EES48822.1| transcriptional regulator, CarD family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 163 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ IVYP+ GVG I I E G ++ I + M L +P+ + D+ +R + Sbjct: 1 MFNIGDKIVYPSQGVGIIELIGEMLFKGEVQNYYKIHIFNNNMTLTLPINRVDDLNIRLV 60 Query: 73 SEAHFVERALKLVRGK----ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 S++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q Sbjct: 61 SDSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVREQ 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE+ + +V EI+ ++S +A +L+ + ++ Sbjct: 121 HSLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNLAIN 162 >gi|86159279|ref|YP_466064.1| CarD family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775790|gb|ABC82627.1| transcriptional regulator, CarD family [Anaeromyxobacter dehalogenans 2CP-C] Length = 399 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 77/160 (48%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R+++ Sbjct: 31 KPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLRRVAT 90 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 +E + W R ++ ++ +G ++ +AEVV+ LH Sbjct: 91 GAQMEGVFHYLGAVYDDPELDWKIRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRPLPTK 150 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ER+ Y++A + +V E++ ++ A + I+ L + Sbjct: 151 EREQYDNARHLLVHEVSVSLAVPPGLAEDYIDYALMPPAG 190 >gi|297624690|ref|YP_003706124.1| CarD family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165870|gb|ADI15581.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM 17093] Length = 168 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 69/160 (43%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 ++ ++ G+ +V P +GVG + + VAG ++ + F VPV Sbjct: 1 MKEAQKTYKHGDQVVLPPYGVGVVAGTTVRTVAGTDHHYYEVEFPNGTSKAFVPVAAPQA 60 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 G+R V + L+ + W+ R + ++SGD IA + +L R D Sbjct: 61 AGLRPALTKAEVHKVLERLSNGRINLPKQWAARHRRVTEILSSGDPYQIATLGSELRRWD 120 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 + +RQ Y AL + EI+AV I+ EA +++ Sbjct: 121 LERGLPDLDRQAYRRALRLLAGEISAVLGITPKEAREMMD 160 >gi|224534394|ref|ZP_03674972.1| putative transcription factor [Borrelia spielmanii A14S] gi|224514496|gb|EEF84812.1| putative transcription factor [Borrelia spielmanii A14S] Length = 162 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKKFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKKKIKNIL 156 >gi|187918225|ref|YP_001883788.1| CarD-like transcriptional regulator [Borrelia hermsii DAH] gi|119861073|gb|AAX16868.1| CarD-like transcriptional regulator [Borrelia hermsii DAH] Length = 161 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R Sbjct: 1 MTFVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRA 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG--------DLIAIAEVVRDLH 123 L VE +++ Q KI G D+++ A++ + L+ Sbjct: 61 LVSREKVEEVFDIMKDFEG----------QIDQKKIKDGSHDFYKQSDILSTAKLYKFLY 110 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E + E+++ + EI+ IS EA I+ LS+ S Sbjct: 111 TKSMQKELPFYEKRILNDFELILQHEISLALQISFEEAKQKIKEVLSTGKS 161 >gi|15594700|ref|NP_212489.1| transcription factor, putative [Borrelia burgdorferi B31] gi|195941293|ref|ZP_03086675.1| transcription factor, putative [Borrelia burgdorferi 80a] gi|216264671|ref|ZP_03436663.1| putative transcription factor [Borrelia burgdorferi 156a] gi|218249763|ref|YP_002374875.1| putative transcription factor [Borrelia burgdorferi ZS7] gi|223889019|ref|ZP_03623610.1| putative transcription factor [Borrelia burgdorferi 64b] gi|224533174|ref|ZP_03673774.1| putative transcription factor [Borrelia burgdorferi WI91-23] gi|224533714|ref|ZP_03674302.1| putative transcription factor [Borrelia burgdorferi CA-11.2a] gi|225549124|ref|ZP_03770099.1| putative transcription factor [Borrelia burgdorferi 94a] gi|226320426|ref|ZP_03795993.1| putative transcription factor [Borrelia burgdorferi 29805] gi|226321672|ref|ZP_03797198.1| putative transcription factor [Borrelia burgdorferi Bol26] gi|2688253|gb|AAC66731.1| transcription factor, putative [Borrelia burgdorferi B31] gi|215981144|gb|EEC21951.1| putative transcription factor [Borrelia burgdorferi 156a] gi|218164951|gb|ACK75012.1| putative transcription factor [Borrelia burgdorferi ZS7] gi|223885835|gb|EEF56934.1| putative transcription factor [Borrelia burgdorferi 64b] gi|224511901|gb|EEF82302.1| putative transcription factor [Borrelia burgdorferi WI91-23] gi|224513007|gb|EEF83370.1| putative transcription factor [Borrelia burgdorferi CA-11.2a] gi|225370350|gb|EEG99788.1| putative transcription factor [Borrelia burgdorferi 94a] gi|226232861|gb|EEH31614.1| putative transcription factor [Borrelia burgdorferi Bol26] gi|226234179|gb|EEH32893.1| putative transcription factor [Borrelia burgdorferi 29805] gi|312148240|gb|ADQ30899.1| transcription factor, putative [Borrelia burgdorferi JD1] gi|312149526|gb|ADQ29597.1| transcription factor, putative [Borrelia burgdorferi N40] Length = 162 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKKKIKNIL 156 >gi|219684504|ref|ZP_03539447.1| putative transcription factor [Borrelia garinii PBr] gi|219671866|gb|EED28920.1| putative transcription factor [Borrelia garinii PBr] Length = 162 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDIIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKEKIKNIL 156 >gi|328951535|ref|YP_004368870.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] gi|328451859|gb|AEB12760.1| transcriptional regulator, CarD family [Marinithermus hydrothermalis DSM 14884] Length = 164 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 M+Q +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+ Sbjct: 1 MKQ-YRPGDKVVLPPYGVGVVAGIAKRTVAGVGRSYYQVEFPGTRSKAFVPVESPGQVGL 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R V L+ ++ W+ R + + GD IA + L R + + Sbjct: 60 RPALSREEVGEILERLKNGRVSLPKQWAARHRRVTEILAEGDPYRIAVLAGQLRRWEVER 119 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ + A+N + E++ I+ EA L E Sbjct: 120 GLPDLDRQAFRRAVNLLAEEVSQALEITVEEARQLFED 157 >gi|150016777|ref|YP_001309031.1| CarD family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903242|gb|ABR34075.1| transcriptional regulator, CarD family [Clostridium beijerinckii NCIMB 8052] Length = 165 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F G+ +VYP+ G+G I I+E+E+ G K++ ++I + M L +P+ A +R + Sbjct: 1 MFNIGDKVVYPSQGIGIIDVIEEKELKGEKIKCYIIHLINNTMKLTLPISAANTFNIRLV 60 Query: 73 SEAHFVERALKLVR----GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 S+ +E +LK + + + + R K+ SG EV+ DL + Sbjct: 61 SDIKTLENSLKHLDRFMTEAEKFSKINYKERRNISKIKMKSGTFDEFIEVIFDLTQLKRW 120 Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + SE+Q+ +V EIA ++ EA L++++++ KS Sbjct: 121 HSLNSSEKQMLNHIKKIVVEEIAQAKCLTSDEASELLDISMNLKS 165 >gi|224531667|ref|ZP_03672299.1| putative transcription factor [Borrelia valaisiana VS116] gi|224511132|gb|EEF81538.1| putative transcription factor [Borrelia valaisiana VS116] Length = 162 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKEKIKNIL 156 >gi|111115179|ref|YP_709797.1| transcription factor, putative [Borrelia afzelii PKo] gi|216263817|ref|ZP_03435811.1| putative transcription factor [Borrelia afzelii ACA-1] gi|110890453|gb|ABH01621.1| transcription factor, putative [Borrelia afzelii PKo] gi|215979861|gb|EEC20683.1| putative transcription factor [Borrelia afzelii ACA-1] Length = 162 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKKFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKKKIKNIL 156 >gi|221217751|ref|ZP_03589219.1| putative transcription factor [Borrelia burgdorferi 72a] gi|225550083|ref|ZP_03771043.1| putative transcription factor [Borrelia burgdorferi 118a] gi|221192428|gb|EEE18647.1| putative transcription factor [Borrelia burgdorferi 72a] gi|225369195|gb|EEG98648.1| putative transcription factor [Borrelia burgdorferi 118a] Length = 162 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKEFEGQIDSKKIKDGGYEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKKKIKNIL 156 >gi|51598613|ref|YP_072801.1| transcription factor, putative [Borrelia garinii PBi] gi|219685417|ref|ZP_03540235.1| putative transcription factor [Borrelia garinii Far04] gi|51573184|gb|AAU07209.1| transcription factor, putative [Borrelia garinii PBi] gi|219672973|gb|EED29994.1| putative transcription factor [Borrelia garinii Far04] Length = 162 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS EA I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEAKEKIKNIL 156 >gi|119953150|ref|YP_945359.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135] gi|119861921|gb|AAX17689.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135] Length = 161 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 18/171 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R Sbjct: 1 MAFVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRA 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG--------DLIAIAEVVRDLH 123 L VE +++ Q KI G D+++ A++ + L+ Sbjct: 61 LVSKEKVEEVFNIIKDFEE----------QIDQKKIKDGSHDFYKQSDILSTAKLYKFLY 110 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E + E+++ + EI+ IS EA I+ LS S Sbjct: 111 TKSMQKELPFYEKRILNDFELILQHEISLALQISFEEAKQKIKEVLSMGKS 161 >gi|225552173|ref|ZP_03773113.1| putative transcription factor [Borrelia sp. SV1] gi|225371171|gb|EEH00601.1| putative transcription factor [Borrelia sp. SV1] Length = 162 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R Sbjct: 1 MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRA 60 Query: 72 LSEAHFVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L VE +++ + ++ E+ K D++ A++ + L++ +Q E Sbjct: 61 LVSKEKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKK---SDILDTAKLYKFLYKKSTQKE 117 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + E+++ + EI+ IS E I+ L Sbjct: 118 LPFYEKRILNDFELILEHEISLALQISFEEVKKKIKNIL 156 >gi|203284271|ref|YP_002222011.1| transcription factor, putative [Borrelia duttonii Ly] gi|201083714|gb|ACH93305.1| transcription factor, putative [Borrelia duttonii Ly] Length = 161 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R Sbjct: 1 MSFVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRA 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG--------DLIAIAEVVRDLH 123 L VE +++ Q KI G D+++ A++ + L+ Sbjct: 61 LVSKEKVEEVFDIIKDFEG----------QIDQKKIKDGSHDFYKQSDILSTAKLYKFLY 110 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 Q E + E+++ + EI+ IS EA I LS Sbjct: 111 VKSMQKELPFYEKRILNDFELILQHEISLALQISFEEAKEKIREVLS 157 >gi|203287808|ref|YP_002222823.1| transcription factor, putative [Borrelia recurrentis A1] gi|201085028|gb|ACH94602.1| transcription factor, putative [Borrelia recurrentis A1] Length = 164 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 18/171 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F + +VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R Sbjct: 1 MSFVLDQAVVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRA 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG--------DLIAIAEVVRDLH 123 L VE +++ Q KI G D+++ A++ + L+ Sbjct: 61 LVSKEKVEEVFDIIKDFEG----------QIDQKKIKDGSHDFYKQSDILSTAKLYKFLY 110 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q E + E+++ + EI+ IS EA I LS + Sbjct: 111 VKSMQKELPFYEKRILNDFELILQHEISLALQISFEEAKEKIREVLSGGQA 161 >gi|55980137|ref|YP_143434.1| hypothetical protein TTHA0168 [Thermus thermophilus HB8] gi|55771550|dbj|BAD69991.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 164 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 69/156 (44%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRK 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ A++ + E+A I+ EA L E Sbjct: 122 PDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEE 157 >gi|46200120|ref|YP_005787.1| transcriptional regulator [Thermus thermophilus HB27] gi|46197748|gb|AAS82160.1| transcriptional regulator [Thermus thermophilus HB27] Length = 164 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 69/156 (44%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRK 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILAEGNPYRIAQMAGQLRAWEVERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ A++ + E+A I+ EA L E Sbjct: 122 PDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEE 157 >gi|313679234|ref|YP_004056973.1| CarD family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313151949|gb|ADR35800.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM 14977] Length = 164 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+R Sbjct: 2 KEYRPGDKVVLPPYGVGVVAGIAQRTVAGIGRSYYQVEFPGSRSKAFVPVESPQQVGLRP 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V + L+ ++ W+ R + ++ G+ IA + L R D++ Sbjct: 62 ALTRDEVPQILEHLKHGQLPLPKQWAARHRRVTEILSEGNPHRIAILAGQLRRWDAERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ + A+N + E+A I+ E + E Sbjct: 122 PDLDRQAFRRAINLLAEEVAQALEITVSETRVVFEE 157 >gi|291294864|ref|YP_003506262.1| CarD family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290469823|gb|ADD27242.1| transcriptional regulator, CarD family [Meiothermus ruber DSM 1279] Length = 164 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 66/159 (41%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 +R G+ +V P +GVG + I ++ VAG ++ + F + VPV +R+ Sbjct: 4 YRPGDKVVLPPYGVGVVAGIAQRSVAGSDRAYYQVDFPGTRSKAYVPVEAPQTTRLRRAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V L L++ W+ R ++ + GD IA + L + + Sbjct: 64 SPDQVNEILALLQEGRLPLPRQWAARHRKTTEILADGDPFRIATLAGQLRAWELEKGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 +RQ A++ + EI+ V I+ EA L E + Sbjct: 124 LDRQALRRAMHLLAEEISQVLEITLDEARKLFEEAVGES 162 >gi|218294627|ref|ZP_03495481.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23] gi|218244535|gb|EED11059.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23] Length = 164 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 68/156 (43%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + FR G+ +V P +GVG + I ++ ++G+ ++ + F + VPV +GMRK Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSISGVSRAYYQVDFPGSRSKAYVPVEAPQSVGMRK 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 62 ALSPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ A+ + E++ I+ EA L E Sbjct: 122 PDLDRQALRRAICLLAEEVSQTLEITVQEAKRLFEE 157 >gi|320449429|ref|YP_004201525.1| transcriptional regulator [Thermus scotoductus SA-01] gi|320149598|gb|ADW20976.1| transcriptional regulator [Thermus scotoductus SA-01] Length = 164 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 68/156 (43%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +GMRK Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGISRAYYQVDFPGSRSKAYVPVEAPQSVGMRK 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 V L L++ W+ R ++ + G+ IA++ L + + Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ A+ + E++ I+ EA L E Sbjct: 122 PDLDRQALRRAIYLLAEEVSQTLEITVQEAKRLFEE 157 >gi|149919813|ref|ZP_01908290.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] gi|149819420|gb|EDM78851.1| transcriptional regulator, CarD family protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAK 106 + M L VP+ A +G+R L VE +++R + ++ W+RR +EY K Sbjct: 2 LRVLGKDMTLMVPMSNADSVGLRNLITNEQVEEVYEVLRKRGEKISTATWNRRHREYMDK 61 Query: 107 INSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 I +G L IA V+RDL+ + SY ER + E+A +++E+A V +E E IE Sbjct: 62 IRTGSLAKIATVLRDLYLLRGDKDLSYGERNMLETARALLIQELALVKEKTEDEVEKEIE 121 >gi|313680694|ref|YP_004058433.1| CarD family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313153409|gb|ADR37260.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM 14977] Length = 167 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 1/166 (0%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 GF G+ +VYPA G G I EI E+EV G + ++VI + + VPV KA +G+ Sbjct: 2 AAMGFNVGDPVVYPAQGGGYIREIAEREVMGERNTYYVIELLRKPGTIMVPVEKAERLGL 61 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + ++ + G+AR + W R +E ++ D + +A ++ LHR Sbjct: 62 RPPLAGADRDALVRAL-GEARDLASGWPARQREIGRALSESDPLELARMLASLHRRHQLR 120 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 S +E Q Y + + E+A + A + L++ + + Sbjct: 121 PLSGTEHQQYRELVGILSEELALAENGDLQAAEAYLTERLNALADE 166 >gi|4154037|emb|CAA22685.1| putative transcriptional regulator [Mycobacterium leprae] Length = 94 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R Sbjct: 1 MIFKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDA 105 + +++ +++R + T WSRR + Sbjct: 61 VVGQEGLDQVFQVLRAPHTEEPTNWSRRYKANLE 94 >gi|326792245|ref|YP_004310066.1| CarD family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543009|gb|ADZ84868.1| transcriptional regulator, CarD family [Clostridium lentocellum DSM 5427] Length = 160 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ + P G G + I+E+++ E+ +I + +P K R + Sbjct: 1 MFKVGDKVFCPLRGAGIVATIEERKMLDETKEYIIIKLQSSNTTVMIPTDKVEASHFRFV 60 Query: 73 SEAHFVERALKLVRGKARV--KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 S+ L+ + K T+ +R + ++ +G L EV+R+L Sbjct: 61 SDETMTNEVLEKLADKETEIHASTVLKQRMKVNKERLMAGSLADYGEVIRELTHIQRGKA 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SE + A + E++ + SIS EA L++ L+ Sbjct: 121 LNASENAMLMEARKFLADELSLIKSISMKEATKLLDKVLA 160 >gi|2393788|gb|AAC45647.1| OrfC [Bacillus subtilis] Length = 116 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 55/115 (47%) Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109 M + +P K + +R +++ ++ + + + + W +R + KI + Sbjct: 1 MSISNMTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKT 60 Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 G++ AEVVRDL R + + SE+++ ++A ++ E+ + I+E + + Sbjct: 61 GEIQEGAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSF 115 >gi|160946835|ref|ZP_02094038.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270] gi|158447219|gb|EDP24214.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270] Length = 159 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKLSE 74 GE I YP HG G I I+++++ F+VI + + + + RKL Sbjct: 3 VGEKIFYPMHGAGLIKSIEDKDLGDYCERFYVIELPFEQNLHIFIKEDDIDKFEFRKLVN 62 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 ++ + + W +R +E ++ S D+ IA V++ L + + + S Sbjct: 63 EDTLDEVYNYLNNEEFPMPNNWVQRYKENTKRLKSSDIFNIAYVLKGLSIRNEKGKLSLK 122 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E + A +V E V+ S+ + +IE ++ Sbjct: 123 ELFMLNLAKRILVSEFVMVSGFSKNKINKIIEYSME 158 >gi|320333642|ref|YP_004170353.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754931|gb|ADV66688.1| transcriptional regulator, CarD family [Deinococcus maricopensis DSM 21211] Length = 165 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 65/154 (42%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +V P +G+G ++ + VAG ++ + F VPV + GMR Sbjct: 4 FSKGDRVVLPPYGIGVVSGTCTRPVAGTPHAYYQVEFPNTTSRAFVPVDAPMTAGMRPAL 63 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L+ ++ W+ R ++ + SGD +A + +L R + + Sbjct: 64 TGEDMPALLERLQEGQLNLPRQWAARHRKVTEILVSGDPFELATLACELRRWNVERGLPD 123 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ Y AL + +E+ +N +L++ Sbjct: 124 LDRQAYRRALKLLNQEVHDLNENDAFHVRSLLDT 157 >gi|255527262|ref|ZP_05394143.1| transcriptional regulator, CarD family [Clostridium carboxidivorans P7] gi|296187241|ref|ZP_06855637.1| CarD-like transcriptional regulator [Clostridium carboxidivorans P7] gi|255509047|gb|EET85406.1| transcriptional regulator, CarD family [Clostridium carboxidivorans P7] gi|296048112|gb|EFG87550.1| CarD-like transcriptional regulator [Clostridium carboxidivorans P7] Length = 158 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 74/148 (50%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 + + P +G G +T++++ + + ++ I D + L +P + +D +R ++ Sbjct: 6 QKVFVPNYGAGIMTKVEDSKSYDVNKKYVNIFILIDNINLYIPEDRLLDYRIRNITSKEN 65 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137 +++A +++ K + WS+R ++ + KI GD + EV+RDL+ S+ ER+ Sbjct: 66 LDKAFDIIKSKPQTIEKKWSKRYKKNNDKIKEGDFFQMCEVIRDLYYLKSKGTIPPGERR 125 Query: 138 LYESALNRMVREIAAVNSISEPEAINLI 165 + + N + EIA + I A+ I Sbjct: 126 ILDKVENMVGSEIALLLGIKIEAALGEI 153 >gi|226354827|ref|YP_002784567.1| CarD family transcriptional regulator [Deinococcus deserti VCD115] gi|226316817|gb|ACO44813.1| putative Transcriptional regulator, CarD family [Deinococcus deserti VCD115] Length = 178 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 65/161 (40%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F+ G+ +V P +G+G + E+ VAG ++ + F VPV G+R+ Sbjct: 5 AFQIGDRVVLPPYGIGVVCGTCERPVAGQAHAYYQVEFPATASRAYVPVADPACTGIRRA 64 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + L + WS R + + + G +A + +L R + Q Sbjct: 65 LNDQDLPDLLNQLCHGELELPRQWSARHRVVNDILAGGKPYELAALTCELRRWNMQRGLP 124 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 +RQ + A+ + +E++ + + + + ++ + + Sbjct: 125 DLDRQAFRRAIRLLEQEVSDLRNHLARQIEDFLQEVWNEQP 165 >gi|229917522|ref|YP_002886168.1| CarD family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468951|gb|ACQ70723.1| transcriptional regulator, CarD family [Exiguobacterium sp. AT1b] Length = 172 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD--KMCLKVPVGKAIDIGMR 70 F+TG+ I+Y HGV I +I ++ VAG ++ + + K+ + +PV ++ M Sbjct: 1 MFKTGDLIIYSTHGVCRIDDISDKTVAGETKSYYTLHPINNSQKLQISIPVDN-DNVMML 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 L EA L+ R + R +E+ ++SG+ IA+VV L R + Sbjct: 60 TLLEADEASEILESFRSPGVEWNPHSNNRNREFLNVVHSGNRHEIAQVVNTLSRRQIEAL 119 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + +R++ E+A +V+E++ SE + I L Sbjct: 120 QANKKLYEQDRKILENAKTILVKELSLALERSESDIERTIGEYL 163 >gi|182419889|ref|ZP_02951127.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237669021|ref|ZP_04529005.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376258|gb|EDT73842.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237657369|gb|EEP54925.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 165 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +VYP GVG I I+E+E G K +++ I + M L +P+ + MR +S Sbjct: 4 FDIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHIS 63 Query: 74 EAHFVERALKLV----RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 ++ ++ L + + ++ +T + R + Y K+ SG L E++ +L + Sbjct: 64 DSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDFLEIISNLTELKTIH 123 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + E+ + + ++ EIA IS EA L+++ ++S Sbjct: 124 DLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS 165 >gi|297567462|ref|YP_003686434.1| CarD family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851911|gb|ADH64926.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM 9946] Length = 164 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 67/156 (42%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + +R G+ +V P +GVG + I ++ ++G + ++ + F + VPV MR Sbjct: 2 KEYRPGDKVVLPPYGVGVVASIMQRTISGNQRAYYQVEFPNTRSKAYVPVESPQSARMRP 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 +E L+L+R W+ R ++ + GD IA + L + + Sbjct: 62 ALCREEIEEILELLRNGRLSLPRQWAARHRKTSEILAEGDPYRIATLAGQLRAWELERGL 121 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +RQ + A++ + E+ +S EA + E Sbjct: 122 PDLDRQAFRRAIHLLAEEVCQAMEVSLEEARAMFEN 157 >gi|94984278|ref|YP_603642.1| CarD family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554559|gb|ABF44473.1| transcriptional regulator, CarD family [Deinococcus geothermalis DSM 11300] Length = 167 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 2/167 (1%) Query: 10 MRQGF-RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 M++ F RTG+ +V P +G+G ++ ++ VAG ++ + F VPV G Sbjct: 1 MKRAFFRTGDRVVLPPYGIGVVSGTCQRPVAGSIQVYYQVDFPNTASRAFVPVDAPQSTG 60 Query: 69 MRKLSEAHFVERALKLVRGKARVK-RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 +R A + L+ ++ + W+ R + + GD IA + +L R + Sbjct: 61 LRAALTAADMPGLLQRLQSSQTLNLPRQWAARHRRVTEILVGGDPYEIATLTCELRRWNM 120 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + +RQ + A+ + +E+ + + L+ + + Sbjct: 121 ERGLPDLDRQAFRRAIRLLEQEVRGLEDPCAQDVQRLLNHVWNETPN 167 >gi|257068130|ref|YP_003154385.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558948|gb|ACU84795.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 179 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ + +P HG I + V G + E+ + D+M + VP +G+R L Sbjct: 14 KVGDVLTHPVHGPVRIVSTCTRTVRGTEREYVDLEVIGDEMRISVPSDGRDVVGLRTLLA 73 Query: 75 AHFVERALKLVRGKARV--KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 + + + K+ W+ R + ++ +G L EV+R + R S Sbjct: 74 EPEIVEMITQLGAPIEAPGKKASWAHRIKSLQMQLQTGRLTDRVEVIRAIVRDSGGTPSS 133 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 +ER L + A++ + EIA S+S EA L++ Sbjct: 134 LAERNLLKQAIDPLASEIAIARSVSREEAHELLQS 168 >gi|320335300|ref|YP_004172011.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756589|gb|ADV68346.1| transcriptional regulator, CarD family [Deinococcus maricopensis DSM 21211] Length = 168 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 1/141 (0%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +VYP HG G + + E+ V G+K ++ + + VPV +A D+G+R+ + Sbjct: 8 REGDSVVYPNHGAGVVRALTERTVLGVKQAYYEVHLFGKDAQVLVPVARARDLGLRRATR 67 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 V L + + + + R + + + DL+ + +V L R D S Sbjct: 68 REDVPNLLAELSTDIPLPES-FQARYRAEQELLQAADLVTLTRLVGTLVRRDVTRGLPSS 126 Query: 135 ERQLYESALNRMVREIAAVNS 155 E + A + E+ Sbjct: 127 EMDVLMHARKTLEAELEVALG 147 >gi|255655277|ref|ZP_05400686.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|296451261|ref|ZP_06893001.1| probable regulatory protein [Clostridium difficile NAP08] gi|296880387|ref|ZP_06904350.1| probable regulatory protein [Clostridium difficile NAP07] gi|296259867|gb|EFH06722.1| probable regulatory protein [Clostridium difficile NAP08] gi|296428628|gb|EFH14512.1| probable regulatory protein [Clostridium difficile NAP07] Length = 165 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 78/164 (47%), Gaps = 2/164 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 ++ GE ++YP G + +I +++ +++ ++ + + +PV A IG+R Sbjct: 1 MYKIGESVMYPKEGACCVNDIVTKKINHQMQKYYELSVIFNSNLKISIPVLNADRIGIRP 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + V++ ++ + V +R + Y K +SGD+ I ++++ L D + Sbjct: 61 VMDGNDVDKFIQSIDKTDGVWVFDRKQRLKLYHDKFHSGDVFEIVKLIKMLMIQDCSKQL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN-LSSKSS 174 ++++ A + E+AA S + ++ + L+SKS Sbjct: 121 CSTDKEFLNKAQRFALSELAAAQCKSYTVVLEEMKKHILNSKSK 164 >gi|126698862|ref|YP_001087759.1| putative regulatory protein [Clostridium difficile 630] gi|255100283|ref|ZP_05329260.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255306222|ref|ZP_05350394.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|115250299|emb|CAJ68121.1| Transcriptional regulator, CarD family [Clostridium difficile] Length = 165 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 77/162 (47%), Gaps = 2/162 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 ++ GE ++YP G ++ +I +++ +++ ++ + + +PV A IG+R Sbjct: 1 MYKIGESVMYPKEGACSVNDIVTKKINHEMQKYYELSVIFNSNLKISIPVLNADRIGIRP 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + V+ ++ + V R + Y K +SGD+ I ++++ L DS + Sbjct: 61 VMDGNDVDNFIQSINKTDGVWIFDRKERLKLYQDKFHSGDVFEIVKLIKMLMIQDSSKQL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN-LSSK 172 ++++ A + E+AA S + ++ + L+SK Sbjct: 121 CSTDKEFLNKAQKFALSELAAAQCKSYTMVLEEMKKHILNSK 162 >gi|254974810|ref|ZP_05271282.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255092198|ref|ZP_05321676.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255313937|ref|ZP_05355520.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255516617|ref|ZP_05384293.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255649717|ref|ZP_05396619.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|260682872|ref|YP_003214157.1| putative regulatory protein [Clostridium difficile CD196] gi|260686470|ref|YP_003217603.1| putative regulatory protein [Clostridium difficile R20291] gi|306519829|ref|ZP_07406176.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|260209035|emb|CBA62142.1| putative regulatory protein [Clostridium difficile CD196] gi|260212486|emb|CBE03403.1| putative regulatory protein [Clostridium difficile R20291] Length = 165 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 76/162 (46%), Gaps = 2/162 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD-KMCLKVPVGKAIDIGMRK 71 ++ GE ++YP G I+ + +++ +++ + + + + +PV A IG+R Sbjct: 1 MYKIGESVMYPKEGACYISGLVTKDINHHIQKYYELTVIYNSNLKISIPVLNADKIGVRP 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + VE ++ + + +R + Y K +SGD+ I ++++ L D+ + Sbjct: 61 IMDENEVENFIQSLDKVDCLWVFDRKKRLKLYHDKFHSGDVFEIVKLIKMLMIQDNSKQL 120 Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN-LSSK 172 +++ A + E+AA S + ++ + L+SK Sbjct: 121 CSTDKDFLNKAQRFALSELAAAQCKSYTIVLEEMKNHILNSK 162 >gi|15807459|ref|NP_296192.1| hypothetical protein DR_2472 [Deinococcus radiodurans R1] gi|6460292|gb|AAF12015.1|AE002076_7 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 169 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 9 AMRQ-GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +M+Q FR G+ +V P +G+G ++ + +G ++ + F + VP Sbjct: 3 SMKQTAFRPGDRVVLPPYGLGIVSGTCQHTRSGEGCWYYQVDFPESGHLALVPTHSPDQA 62 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 G+R + + + S R ++ + + G +A ++ +L+R Sbjct: 63 GLRPALRQRELRALRQALERGQLELARQCSSRQRQVNEVLRLGQPTQLALLIAELYRWQR 122 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 Q +RQ A+ + +E++ + + +A+ + + L + +S Sbjct: 123 QRPLPDLDRQALRQAIRLLQQEVS---GLEDSQALAIRDFLLRATAS 166 >gi|317055208|ref|YP_004103675.1| CarD family transcriptional regulator [Ruminococcus albus 7] gi|315447477|gb|ADU21041.1| transcriptional regulator, CarD family [Ruminococcus albus 7] Length = 165 Score = 94.8 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 69/165 (41%), Gaps = 7/165 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL-KVPVGKAIDIG-MR 70 ++TG+ ++Y G+ + ++++++ G + E++++ + VPV +G M Sbjct: 1 MYKTGDVVMYGTSGICRVAAVEKRDLTGEEQEYYILRNIYSDKNIYYVPVNNEAALGRMH 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 + V+ + + + + ++R +EY I D I +++ L+ + Sbjct: 61 PVCTKSEVDELISHMNSEGLIWIDNDNKRKEEYSRIIKDADKHEIIRLIKTLYLRRRELS 120 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 S+ A + + E A I E ++ IE +L+ Sbjct: 121 ENGRRLRSSDENYLGIAEDMLFEEFAYALGIDRCEVVDYIEKHLA 165 >gi|86450984|gb|ABC96759.1| transcriptional regulator CarD family [Rhizobium leguminosarum bv. trifolii TA1] Length = 86 Score = 94.0 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 57/86 (66%), Positives = 70/86 (81%), Gaps = 3/86 (3%) Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 AKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L Sbjct: 2 AKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRL 61 Query: 165 IEVNLSSKSSKTEKSTSEN--QDKAA 188 E NL+ K K K+ E+ QD+AA Sbjct: 62 DETNLN-KGPKRGKAIEEDDSQDEAA 86 >gi|169335625|ref|ZP_02862818.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM 17244] gi|169258363|gb|EDS72329.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM 17244] Length = 170 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAID-IGMR 70 ++ E I+Y GV I+EI E+ G K +++++ K+ M + VPV MR Sbjct: 1 MYKVDEIILYDTEGVCRISEITEKTFGGKKQKYYILNTVSKNSMTIYVPVDNEKQTSKMR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 K+ + + + ++ + + + R + Y I SGD + +++R LH Q Sbjct: 61 KILSSDEIYKLIRNMPNEDLIWIENDGERKETYKQIIQSGDRRGLIKIIRTLHFQKEQLT 120 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + S+ Q +SA + E + V I + I I L Sbjct: 121 KQGKKLHMSDEQFMKSAQKILHEEFSHVLKIEPNQVIPFIVNEL 164 >gi|268608669|ref|ZP_06142396.1| transcriptional regulator, CarD family protein [Ruminococcus flavefaciens FD-1] Length = 165 Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 71/165 (43%), Gaps = 7/165 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAID-IGMR 70 + TG+ ++Y + G+ +T I+++++ G + E++++ + +K VP+ M Sbjct: 1 MYSTGDIVMYGSFGICKVTAIEKRDLTGEEQEYYILKHINSEKNIFYVPINNVTALSKMH 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 + V+ + + + + +R +EY I D+ I +++ L+ + Sbjct: 61 PICSKAEVDELISHMDSEELIWIDNDIKRKEEYSRIIKDADIHEIIRLIKTLYLRRKELA 120 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + ++ A N + E A I + E + IE +++ Sbjct: 121 VSGKKLRSTDENYLSLAENMLFEEFAYALDIDKSEVVEYIEKHIA 165 >gi|167754859|ref|ZP_02426986.1| hypothetical protein CLORAM_00363 [Clostridium ramosum DSM 1402] gi|237735409|ref|ZP_04565890.1| transcriptional regulator [Mollicutes bacterium D7] gi|167704909|gb|EDS19488.1| hypothetical protein CLORAM_00363 [Clostridium ramosum DSM 1402] gi|229381154|gb|EEO31245.1| transcriptional regulator [Coprobacillus sp. D7] Length = 166 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 67/163 (41%), Gaps = 6/163 (3%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID-IGMRK 71 ++ G+ ++Y GV I +I +++ + +++ + D + + VP MRK Sbjct: 1 MYKIGDTVLYGREGVCKIKDIVTRKLNNIDKQYYFLTPLDDHITILVPTDNEEALSKMRK 60 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +K + + + R Q+Y+ IN G+ + ++ + L+ + EK Sbjct: 61 VLSKKDIYELIKTMPDNETIWINDKNIRKQKYNDIINHGNHEQLVKLTKTLYLNKQKQEK 120 Query: 132 SY-----SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + ++ ++A + E ++ + + I L Sbjct: 121 AGKKFHVQDQHFLQTAEKMLYDEFCHTLNLKPEQILPFILETL 163 >gi|323488890|ref|ZP_08094129.1| transcriptional regulator, CarD family protein [Planococcus donghaensis MPA1U2] gi|323397453|gb|EGA90260.1| transcriptional regulator, CarD family protein [Planococcus donghaensis MPA1U2] Length = 169 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-CLKVPVGKAIDIGMRK 71 F G+HI+Y HG+ I +I + V+ + +++ + ++ + + PV + M K Sbjct: 1 MFAIGDHIIYSTHGLCKINDIYDMTVSEVTKKYYQLQPLENTLVTISTPVDN-DKVVMLK 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----DS 127 L + +++ + + +AQ KI SGD + IA V+ L R Sbjct: 60 LLQREEALAIIEVFKQPETESEVPQNLKAQ--PKKIQSGDRMQIAGVINGLLRKKFDTQI 117 Query: 128 QPEKSYS-ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 Q E Y + L + + +E+A + S E +I ++ + + Sbjct: 118 QKESLYEHDYNLLNNTQIILFKELAHALNTSFEEINKMINDLITDEQPQ 166 >gi|319937742|ref|ZP_08012145.1| hypothetical protein HMPREF9488_02981 [Coprobacillus sp. 29_1] gi|319807177|gb|EFW03791.1| hypothetical protein HMPREF9488_02981 [Coprobacillus sp. 29_1] Length = 169 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIG-MR 70 ++ + +VY GV IT++ ++ A +E++V+ + + +P+ + ++ Sbjct: 1 MYKINDMVVYGNEGVCKITDLTKRSFANKVVEYYVLKPVYNEHSIVYIPIDNEELVSKIK 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 ++ + ++ + + ++R ++Y I SG+ + +++R L+ + Sbjct: 61 RILSVEDIHELIRTLPNEDYCWIENDNQRKEKYREIIKSGNRKELMKMIRTLYLYQQELK 120 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + ++ + ++ A + E A V I + + ++ I Sbjct: 121 KDGKKIHAADDKFFKDAEKVLYDEFAYVLDIEQEDVVSFI 160 >gi|253576632|ref|ZP_04853960.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844046|gb|EES72066.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 7/164 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F G+ I Y HGV I E+ + +AG+ ++ + + + + +PV +A + ++K Sbjct: 1 MFDKGDLISYSVHGVCRIDEVCVKSLAGVSKTYYELHPLSNETLKISIPVDRAP-LQLQK 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ--- 128 L + R Y A + +GD IA+V L R Sbjct: 60 LMGPEEAMALIDSFMAPGIPWIDNNHERHHNYSAIVKTGDREGIAKVANTLMRRKQWSEQ 119 Query: 129 --PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + + QL N E+A V + + + ++ ++ Sbjct: 120 NHKKLGNQDNQLLLGIQNTSFNEMAIVLKTTYDDVLQAVQEKVA 163 >gi|261367183|ref|ZP_05980066.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] gi|282570778|gb|EFB76313.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] Length = 167 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 10/170 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDI-GMR 70 F+ G+ + Y GV TI E K +AG + E +++ M + VP + + MR Sbjct: 1 MFQVGDAVSYGTSGVCTIAEKKNVRLAGQQCECYILKPVYDSTMKICVPCNSQVLLDRMR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125 L + + L++ A R + Y + SGD A+ ++RD++ R Sbjct: 61 ALPSKQEL---MDLLQEPAPEHEPDPEVRKEHYRQTLQSGDRHALLRMIRDIYTERRHRH 117 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 + S E A N + E A I E + I L + +++ Sbjct: 118 AMGKQLSSYEDSALREAQNILHSEFAYTMGIDPGEVPDFIAGVLDNAANQ 167 >gi|254519000|ref|ZP_05131056.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912749|gb|EEH97950.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 163 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 67/164 (40%), Gaps = 15/164 (9%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F+ G+ I+Y HG+ + +I E+ ++ +K +++++ ++ + + PV + M + Sbjct: 1 MFKKGDLILYSVHGICKVDDICEKTISHIKKQYYILHPINETNLSISTPVDN-DKVAMLE 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L + L+L + W R++ Y+ I + I ++ L RT Sbjct: 60 LLTKEEAQETLELFKN----PGINWIEIDRERSEVYNEIIKQWNRREIVKIANTLMRTKI 115 Query: 128 QPEKSY-----SERQLYESALNRMVREIAAVNSISEPEAINLIE 166 E + ++++ + + E+A + E + Sbjct: 116 DLENNGKKFHEKDKKMLLDIQSILFSELAFSLDTTSEEIAKTVN 159 >gi|114567389|ref|YP_754543.1| transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338324|gb|ABI69172.1| transcriptional regulator, CarD family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 166 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 75/170 (44%), Gaps = 16/170 (9%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV-AGMKLEFFVIAFDKDKMC--LKVPVGKAIDIGM 69 F+ +++VY +GV I +I++ + E++++ + + VPV +I M Sbjct: 1 MFKVKDYVVYGLNGVCQIADIRKDNYDNSNETEYYILKPVYNTSITSIMVPVNN-SNIMM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLH-- 123 R +S L L+ ++ T W ++R +Y A + +G ++++ L+ Sbjct: 60 RAISTK---NDVLSLIAKMPDIETTSWIDNDTQRTNQYKAALRTGKTEEWVKIIKTLYQE 116 Query: 124 ---RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 R+ + + ++ L +A + E A IS E ++ I ++S Sbjct: 117 KKARSAVGRKLTTTDEGLLNTAEKHLNEEFAIALDISPDEVVSYIRKHIS 166 >gi|160940591|ref|ZP_02087935.1| hypothetical protein CLOBOL_05486 [Clostridium bolteae ATCC BAA-613] gi|158436551|gb|EDP14318.1| hypothetical protein CLOBOL_05486 [Clostridium bolteae ATCC BAA-613] Length = 165 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMR 70 F+ GE+I+Y GV + I + + + ++ + FD+D + +PV + MR Sbjct: 1 MFKKGEYILYGTVGVCQVEGISKPDFSNNDKVYYSLVPKFDQDT-TIYIPVDSP-KVKMR 58 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125 ++ E+ + + + R Q Y + SGD +A +++++ R Sbjct: 59 EIMTRQEAEQFILALPSVEGKQYANDKERPQAYRQILESGDCTQLASMIKEISEMEQNRR 118 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 S ER +SA + E+A I E + I + Sbjct: 119 GKGKPLSIRERDGVKSARKLLFGELATALDICPEEIPDYITSQIGEA 165 >gi|254518837|ref|ZP_05130893.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912586|gb|EEH97787.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 162 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F+ +++VY ++GV +T+I++ + +LE+++++ +KM +K PV I MR+ Sbjct: 1 MFKINDYVVYGSNGVCKVTDIEQVTLRNEELEYYILSPVYNEKMTIKTPVNN-QKILMRE 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ--- 128 L + LK + V+ RR +EY A I G+ + +V+ + + Sbjct: 60 LMTKAEIVNLLKEISKNETVEIEDSRRRVEEYKAIIRRGNAEELIKVINSIKLEKDEKIS 119 Query: 129 --PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + + ++ + SA ++ +E+A V I E + I+ N+ Sbjct: 120 IGKKLNKTDEDIMISASKQLYQEMAIVLDIDVDEVQDYIKNNI 162 >gi|239627382|ref|ZP_04670413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517528|gb|EEQ57394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 9/163 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMR 70 F+ GE I+Y GV + +I + + ++ + ++KD + +PV + MR Sbjct: 1 MFKKGEFILYGTVGVCQVEKISRTDFSDNDRLYYYLVPRYEKDT-TICIPVDS-DKVMMR 58 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + ER +K + R Q Y I SGD + +A +++++ R + + Sbjct: 59 GIMSRKDAERFVKAWPDVECKEYANDRERPQAYKEAIQSGDCLELASMIKEISRMEQSRK 118 Query: 131 -----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 S E+ ++A + E+AA I + IE + Sbjct: 119 GKGRILSVREKDGAKAARRLLFGELAAALDIYPEDVPEYIEGH 161 >gi|220930374|ref|YP_002507283.1| CarD family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000702|gb|ACL77303.1| transcriptional regulator, CarD family [Clostridium cellulolyticum H10] Length = 175 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 69/173 (39%), Gaps = 7/173 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGK-AIDIGMR 70 F G I+Y HG+ I E+K+ + ++V+ ++ + PVG + MR Sbjct: 1 MFSVGNTIIYGNHGICKIVEVKDMTIDSNTRPYYVLKPVFENNSTIYFPVGNEIAEKKMR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 ++ + ++ + + + + R + Y + + D A+ ++++ LH + + Sbjct: 61 RILSVEEIYTLIREMPDENTIWIENENERKEVYKSILTGTDRSALVKLIKTLHLHEKELK 120 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 + S+ + + A + E V I E + I + S K + Sbjct: 121 DLGKKLHASDEKFLKDAEKTLYDEFVYVLDIDREEVLPFIMEQIEINSKKQGE 173 >gi|291542940|emb|CBL16050.1| Transcriptional regulators, similar to M. xanthus CarD [Ruminococcus bromii L2-63] Length = 162 Score = 77.5 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 70/160 (43%), Gaps = 8/160 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDI-GMR 70 + GE ++Y ++GV ITEI +++ +E++V+ D L VP + + MR Sbjct: 1 MYSIGEIVLYGSNGVCEITEITTKKIGKDSIEYYVLKPVCSDSSTLFVPTQNEMLVSRMR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125 + + ++ L + + + R ++ I+ GD + + E++R +H + Sbjct: 61 AVLSSDEIKDILS-QKTDNEIWIDNKAERCEKIKEIISGGDCMKLVELIRRMHFHSKLQL 119 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 ++ + + A + E++ V I + + L+ Sbjct: 120 KKGRRLHITDERFLKEAEKMVCDEVSVVLHIDRNDVLPLV 159 >gi|269118963|ref|YP_003307140.1| CarD family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268612841|gb|ACZ07209.1| transcriptional regulator, CarD family [Sebaldella termitidis ATCC 33386] Length = 172 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 9/165 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVG-KAIDIGMR 70 ++ + ++Y HGV I I E++ G + + +DK + +PV M Sbjct: 1 MYKVNDTVLYNTHGVCKIVGISEKDFGGNHTSCYALKPVYRDKSMVFIPVNSNNALSKMH 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG-DLIAIAEVVRDLH-----R 124 ++ A + +K + + V +R +EY K+ G D + +++ LH Sbjct: 61 RILSADQIYSLIKALPAEYPVWIQDKDQR-KEYYEKVLLGEDREELIILIKTLHVYHQSL 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 D + ++R + A ++ E A V +I E I I + Sbjct: 120 LDQGKKMHAADRYFMKEAEKKLHEEFAYVLNIKPDEVIPFITEQI 164 >gi|154484319|ref|ZP_02026767.1| hypothetical protein EUBVEN_02032 [Eubacterium ventriosum ATCC 27560] gi|149734796|gb|EDM50713.1| hypothetical protein EUBVEN_02032 [Eubacterium ventriosum ATCC 27560] Length = 172 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 9/173 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDIGM 69 F GE+IV+ GV + +I ++ G + ++V+ + P I M Sbjct: 1 MFNKGEYIVHGRKGVCKVEDITHLDIDGADKKSLYYVLIPMKNQDSKVFYPTDN-DKIPM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 R + VE ++ + + +R +Y I S D + +++ LH+ Sbjct: 60 RTIHTKDQVEEIVEHINEIEPIWIDNERQREYKYKEVIGSCDCKQLIGIIKTLHKRGRSR 119 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 + +Y + + A + E + I +P+ I N++ E Sbjct: 120 LAHGKKITYVDEKYLREAKEVLYDEFSLALDIDKPQVEKYIINNINESDKAAE 172 >gi|18309241|ref|NP_561175.1| CarD family transcriptional regulator [Clostridium perfringens str. 13] gi|18143917|dbj|BAB79965.1| probable transcriptional regulator [Clostridium perfringens str. 13] Length = 168 Score = 74.8 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 71/170 (41%), Gaps = 13/170 (7%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVI-----AFDKDKMCLKVPVGKAID 66 F+ ++I+Y GV + +I ++ + ++ E++V+ + K + +K+PV Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTV-IKIPVDN-KK 58 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 I MR L V + + + +R E+ + SG+ + ++R ++ Sbjct: 59 ISMRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTILRSGNCDDLIVLIRSIYLDK 118 Query: 127 SQPEKSY-----SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + + ++ ++A + E A + I E + I+ ++ Sbjct: 119 KKRKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168 >gi|225378792|ref|ZP_03756013.1| hypothetical protein ROSEINA2194_04462 [Roseburia inulinivorans DSM 16841] gi|225209384|gb|EEG91738.1| hypothetical protein ROSEINA2194_04462 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 4/139 (2%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVP 60 +++ ++ F GE+IVY GV + EI ++ G + ++V+A + + P Sbjct: 49 SNRKENQKKMFEVGEYIVYGCKGVCQVEEITHIDIPGSNKDRLYYVLAPLEDRNGKIYAP 108 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 A + MRK+ E+ ++ + + +R +Y + + D A +++ Sbjct: 109 TDNA-KVAMRKVITRQEAEQLIEEMPQIEELWVVNEKQRELQYKEALKTCDFRAWISIIK 167 Query: 121 DLHRTDSQPEKSYSERQLY 139 L+ + ++S + ++ Sbjct: 168 TLYFRKKRADRSGQKNNIF 186 >gi|168206625|ref|ZP_02632630.1| transcriptional regulator, CarD family [Clostridium perfringens E str. JGS1987] gi|168214107|ref|ZP_02639732.1| transcriptional regulator, CarD family [Clostridium perfringens CPE str. F4969] gi|168217539|ref|ZP_02643164.1| transcriptional regulator, CarD family [Clostridium perfringens NCTC 8239] gi|169343103|ref|ZP_02864129.1| transcriptional regulator, CarD family [Clostridium perfringens C str. JGS1495] gi|182625226|ref|ZP_02953001.1| transcriptional regulator, CarD family [Clostridium perfringens D str. JGS1721] gi|169298741|gb|EDS80816.1| transcriptional regulator, CarD family [Clostridium perfringens C str. JGS1495] gi|170661969|gb|EDT14652.1| transcriptional regulator, CarD family [Clostridium perfringens E str. JGS1987] gi|170714450|gb|EDT26632.1| transcriptional regulator, CarD family [Clostridium perfringens CPE str. F4969] gi|177909538|gb|EDT71978.1| transcriptional regulator, CarD family [Clostridium perfringens D str. JGS1721] gi|182380373|gb|EDT77852.1| transcriptional regulator, CarD family [Clostridium perfringens NCTC 8239] Length = 168 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 71/170 (41%), Gaps = 13/170 (7%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVI-----AFDKDKMCLKVPVGKAID 66 F+ ++I+Y GV + +I ++ + ++ E++V+ + K + +K+PV Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTV-IKIPVDN-KK 58 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 I MR L V + + + +R E+ + SG+ + ++R ++ Sbjct: 59 ISMRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTMLRSGNCDDLIVLIRSIYLDK 118 Query: 127 SQPEKSY-----SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + + ++ ++A + E A + I E + I+ ++ Sbjct: 119 KKRKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168 >gi|160880796|ref|YP_001559764.1| CarD family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429462|gb|ABX43025.1| transcriptional regulator, CarD family [Clostridium phytofermentans ISDg] Length = 168 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 9/161 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE--VAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGM 69 F+ G++I+Y +GV + I E E V ++ + + D+ + P + M Sbjct: 1 MFQVGDYIIYGMNGVCVVENIGEIETKVVPKDRLYYTLRPYYSDRSTIFTPTDNL-KVKM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----R 124 R + L + R EY I D + ++V+ L+ + Sbjct: 60 RSILTKDEAVSILNNIHNIDCSWDIDEKIREMEYKEAIRQCDCKQLLKIVKSLYFSRKAK 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + + + Y A + + E+A + E L+ Sbjct: 120 LADGKKVPARDEKYYHMAEDSLYGELAVSLGLEIEETKELV 160 >gi|238917224|ref|YP_002930741.1| hypothetical protein EUBELI_01297 [Eubacterium eligens ATCC 27750] gi|238872584|gb|ACR72294.1| Hypothetical protein EUBELI_01297 [Eubacterium eligens ATCC 27750] Length = 165 Score = 72.5 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 7/164 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F G+ +VY GV + I + G+ +++ + K + PV + +R Sbjct: 1 MFEIGDKVVYGVVGVCEVENIDTPPIKGISGDYYFLQPVFDSKGIIYSPVDS-NKVMIRS 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RTD 126 + ++ + R + +YD + S D + + ++R L+ R Sbjct: 60 IMTVKECDKLKERARNCKKDGELSEKVTPMQYDEHMKSQDALKLMHLIRALYVIKNERAK 119 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + ++ ++ +A + E AAV + + E ++ LS Sbjct: 120 DLRKMKSADSRMLLAARKLLYGEFAAVYNQTFDEVAEEMDAFLS 163 >gi|260684556|ref|YP_003215841.1| putative regulatory protein [Clostridium difficile CD196] gi|260688214|ref|YP_003219348.1| putative regulatory protein [Clostridium difficile R20291] gi|260210719|emb|CBA65560.1| putative regulatory protein [Clostridium difficile CD196] gi|260214231|emb|CBE06513.1| putative regulatory protein [Clostridium difficile R20291] Length = 169 Score = 72.5 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 8/165 (4%) Query: 14 FRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F+ ++I+Y GV + +I E+ G+K E++V++ + +K+PV + MRK Sbjct: 6 FKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDN-EKVPMRK 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTD 126 L V + + R++++ + G + ++VR + + Sbjct: 65 LLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKS 124 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ + + A + E A + IS E + I ++ Sbjct: 125 IGKKTHQADDNIMKEAERLLSEEFATILDISPNEVSSYISSHIPQ 169 >gi|309777118|ref|ZP_07672082.1| probable transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915127|gb|EFP60903.1| probable transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 165 Score = 72.5 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 18/169 (10%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA-GMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMR 70 F +++ Y + G+ I + ++ + G+ + +V+ + K ++ PV G+R Sbjct: 1 MFEIHDYVRYGSFGLFQIVDKIQKTIKNGVVKDCYVLYGVQQVKTRIETPVDNP---GLR 57 Query: 71 KLSEAHFVERALKLVRGKARVKRTMW----SRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 K+ ++ + K T W +R +E+ + GD IA+ V++ ++ Sbjct: 58 KVLSMEDIDSLI----TKMPDIETNWITDKKKREEEFRNALRCGDCIALVRVMKTIYAVK 113 Query: 127 SQPE-----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + SY++ ++E A +++ EIA IS EA + I LS Sbjct: 114 EEKARNRKQLSYTDHSIFEQAQQQLLEEIAFGAQISVEEADDYIRKKLS 162 >gi|254976584|ref|ZP_05273056.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255093968|ref|ZP_05323446.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255315720|ref|ZP_05357303.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255518381|ref|ZP_05386057.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255651499|ref|ZP_05398401.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|306521319|ref|ZP_07407666.1| putative regulatory protein [Clostridium difficile QCD-32g58] Length = 165 Score = 72.5 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMR 70 F+ ++I+Y GV + +I E+ G+K E++V++ + +K+PV + MR Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDN-EKVPMR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRT 125 KL V + + R++++ + G + ++VR + + Sbjct: 60 KLLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVK 119 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ + + A + E A + IS E + I ++ Sbjct: 120 SIGKKTHQADDNIMKEAERLLSEEFATILDISPNEVSSYISSHIPQ 165 >gi|225019308|ref|ZP_03708500.1| hypothetical protein CLOSTMETH_03261 [Clostridium methylpentosum DSM 5476] gi|224947939|gb|EEG29148.1| hypothetical protein CLOSTMETH_03261 [Clostridium methylpentosum DSM 5476] Length = 176 Score = 72.5 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 72/172 (41%), Gaps = 7/172 (4%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGK 63 +++ ++ F+ + ++Y GV I +I+ ++ + +L ++++ + + PV Sbjct: 1 MRKEQVKAVFQINDTVMYGNTGVCRIVDIRPEKFSDRELVYYILQPVYSESETIYCPVDS 60 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 I +RKL V ++L+ R ++Y + +GD + ++++ LH Sbjct: 61 -DKIKIRKLLSLQEVHELIELMPDAQTEWIENDQLRKEKYTEILRNGDHRELVKLIKTLH 119 Query: 124 -----RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + + ++ ++ A + E A V I E + I L+ Sbjct: 120 IHREEKNREGKKFHLADEKISNEAEKILHGEFAHVLHIQPDEVVPFIMGQLN 171 >gi|325663159|ref|ZP_08151609.1| hypothetical protein HMPREF0490_02350 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470613|gb|EGC73843.1| hypothetical protein HMPREF0490_02350 [Lachnospiraceae bacterium 4_1_37FAA] Length = 177 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 9/176 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKE---QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 ++ G+ +V G+ IT+I +V K + ++ DKM + VPV + Sbjct: 1 MYQVGDCVVKENTGLCRITDIVHLDGMDVDRNKKYYLLVPHSDDKMKIYVPVDSIA-SNL 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 RK E + ++ + V +R Q+Y I S D +++ ++ + Sbjct: 60 RKAIECNEAWSVIENITKIDAVHIENEKQREQKYKEAIKSCDPEQWISIIKTMYFRKQKR 119 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180 + + + + ++ A + E+A E E LI + K K EKS Sbjct: 120 NIQGKKNAAMDERYFKLAEKYLYSELAYAIGKDESEMCQLIADTIKKKDMKAEKSA 175 >gi|126700655|ref|YP_001089552.1| putative regulatory protein [Clostridium difficile 630] gi|255102148|ref|ZP_05331125.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255308017|ref|ZP_05352188.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|115252092|emb|CAJ69930.1| Transcriptional regulator, CarD family [Clostridium difficile] Length = 165 Score = 71.7 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMR 70 F+ ++I+Y GV + +I E+ G+K E++V++ + +K+PV + MR Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDN-EKVPMR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRT 125 KL V + + R++++ + G + ++VR + + Sbjct: 60 KLLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVK 119 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ + + A + E A + IS E + I ++ Sbjct: 120 SIGKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 165 >gi|296452199|ref|ZP_06893907.1| CarD family transcriptional regulator [Clostridium difficile NAP08] gi|296877552|ref|ZP_06901584.1| CarD family transcriptional regulator [Clostridium difficile NAP07] gi|296258938|gb|EFH05825.1| CarD family transcriptional regulator [Clostridium difficile NAP08] gi|296431454|gb|EFH17269.1| CarD family transcriptional regulator [Clostridium difficile NAP07] Length = 169 Score = 71.3 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 8/165 (4%) Query: 14 FRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 F+ ++I+Y GV + +I E+ G+K E++V+ + +K+PV + MRK Sbjct: 6 FKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLNPIYSNNTIIKIPVDN-EKVPMRK 64 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTD 126 L V + + R++++ + G + ++VR + + Sbjct: 65 LLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKS 124 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ + + A + E A + IS E + I ++ Sbjct: 125 IGKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 169 >gi|303242330|ref|ZP_07328815.1| CarD family transcriptional regulator [Acetivibrio cellulolyticus CD2] gi|302590093|gb|EFL59856.1| CarD family transcriptional regulator [Acetivibrio cellulolyticus CD2] Length = 175 Score = 71.3 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 23/170 (13%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 ++ G+ I+Y HGV + I V G ++ I+ + PV ++ MR Sbjct: 1 MYQIGDFIIYGNHGVYKVDGIGTPGVCGIDENKLYYTISAVYGNERIFTPVD--TNVFMR 58 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRR--------AQEYDAKINSGDLIAIAEVVRDL 122 K+ V++ + L+ +K +++ R QEY D + E+++ + Sbjct: 59 KIITFDEVQQLISLI---PSIKESVYCNRNIKLVEDHYQEYLQAY---DCRDLVELIKSI 112 Query: 123 HRT-----DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 + + + + + A + E+A I + IE Sbjct: 113 YTKKTIVAEQGKKLGQIDERFMRKAEELLYGELAVALKIPKESVKGYIEE 162 >gi|255656959|ref|ZP_05402368.1| putative regulatory protein [Clostridium difficile QCD-23m63] Length = 165 Score = 71.3 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 8/166 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMR 70 F+ ++I+Y GV + +I E+ G+K E++V+ + +K+PV + MR Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLNPIYSNNTIIKIPVDN-EKVPMR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRT 125 KL V + + R++++ + G + ++VR + + Sbjct: 60 KLLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVK 119 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ + + A + E A + IS E + I ++ Sbjct: 120 SIGKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 165 >gi|75762570|ref|ZP_00742424.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489952|gb|EAO53314.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 61 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 ++ + + + W +R + KI +G++ AEVVRDL R + + S+ Sbjct: 3 ALKHIIHFFQHGESDRLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNTSD 61 >gi|240143904|ref|ZP_04742505.1| transcriptional regulator, CarD family [Roseburia intestinalis L1-82] gi|257204097|gb|EEV02382.1| transcriptional regulator, CarD family [Roseburia intestinalis L1-82] Length = 180 Score = 70.5 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 11/169 (6%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDI 67 R+ F GE++V A GV I +I +++G E ++V+A + VP I Sbjct: 14 RRMFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDS-EKI 72 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 MR+ ER + + + +R + Y + + D A +V+ L++ Sbjct: 73 IMRRTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKK 132 Query: 128 QPEKSYSER------QLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + + ++ + ++A N + E++ + + + I LS Sbjct: 133 ER-LAQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 180 >gi|291539572|emb|CBL12683.1| Transcriptional regulators, similar to M. xanthus CarD [Roseburia intestinalis XB6B4] Length = 175 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 11/169 (6%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDI 67 R+ F GE++V A GV I +I +++G E ++V+A + VP I Sbjct: 9 RRMFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDS-EKI 67 Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 MR+ ER + + + +R + Y + + D A +V+ L++ Sbjct: 68 IMRRTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKK 127 Query: 128 QPEKSYSER------QLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + + ++ + ++A N + E++ + + + I LS Sbjct: 128 ER-LAQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 175 >gi|168210546|ref|ZP_02636171.1| transcriptional regulator, CarD family [Clostridium perfringens B str. ATCC 3626] gi|170711361|gb|EDT23543.1| transcriptional regulator, CarD family [Clostridium perfringens B str. ATCC 3626] Length = 168 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 70/170 (41%), Gaps = 13/170 (7%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVI-----AFDKDKMCLKVPVGKAID 66 F+ ++I+Y GV + +I ++ + ++ E++V+ + K + +K+PV Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTV-IKIPVDN-KK 58 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 I MR L V + + + +R E+ + SG + ++R ++ Sbjct: 59 ISMRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTMLRSGICDDLIVLIRSIYLDK 118 Query: 127 SQPEKSY-----SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + + ++ ++A + E A + I E + I+ ++ Sbjct: 119 KKRKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168 >gi|291535009|emb|CBL08121.1| Transcriptional regulators, similar to M. xanthus CarD [Roseburia intestinalis M50/1] Length = 165 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 11/167 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDIGM 69 F GE++V A GV I +I +++G E ++V+A + VP I M Sbjct: 1 MFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDS-EKIIM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R+ ER + + + +R + Y + + D A +V+ L++ + Sbjct: 60 RRTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKKER 119 Query: 130 EKSYSER------QLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + ++ + ++A N + E++ + + + I LS Sbjct: 120 -LAQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 165 >gi|225390248|ref|ZP_03759972.1| hypothetical protein CLOSTASPAR_03999 [Clostridium asparagiforme DSM 15981] gi|225043673|gb|EEG53919.1| hypothetical protein CLOSTASPAR_03999 [Clostridium asparagiforme DSM 15981] Length = 168 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71 F G+ I+Y GV I EI E ++ ++ + + VPV + MR Sbjct: 1 MFEKGDLILYETAGVCRIEEISRLEFLKNDRVYYSLVPVFEKDSVIYVPVDN-EKVKMRP 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RTD 126 + E ++ + + +AQ Y + SG+ +A +++ + R Sbjct: 60 IMSREEAEAFIEQLPAIEGRRDIGEKEKAQVYKQILLSGNHRELAAMIKGIFEVGQVRKG 119 Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + + + + A + E+AA + + I L S + Sbjct: 120 KGNRLAVRDEENMKRAQKLLYGELAAALGMHPDQMPAYIGKRLESPA 166 >gi|182417739|ref|ZP_02949057.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237668939|ref|ZP_04528923.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378463|gb|EDT75994.1| transcriptional regulator, CarD family [Clostridium butyricum 5521] gi|237657287|gb|EEP54843.1| transcriptional regulator, CarD family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 166 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 8/164 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 F+ ++++Y +GV +T++ E+ + E++ + + + PV + MR Sbjct: 1 MFKIDDYVIYGGNGVCKVTDVGVPEISRFDSEKEYYTLEPVYENGRIFAPVDN-EKVVMR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128 K+ + + + R E+ I D I ++++ + + Sbjct: 60 KVLTRQEADDLIGTIPSVEVNWIDNMKERDHEFKDIIQHYDCIGFVKIIKTIIEKKREYS 119 Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + S S+ + A + E+A +I + N IE L Sbjct: 120 SDGKKLSVSDANYLKRAQEYLSGELAIALNIPKDTVNNYIENRL 163 >gi|327440812|dbj|BAK17177.1| transcriptional regulator, similar to M. xanthus CarD [Solibacillus silvestris StLB046] Length = 167 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 11/164 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD-KMCLKVPVGKAIDIGMRK 71 ++ G+ Y +HG+ I I EQ G + ++V+ + L PV + + K Sbjct: 1 MYKIGDLTFYKSHGICQIEGIVEQNFTGEPMLYYVMQSKIRPGVTLYHPVES-KNSQLEK 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV-----RDLHRTD 126 + + + + + R + + +++ + + A+++ +DL Sbjct: 60 ILSYDEAVQIMDCFSNEPSEWNDRSTNRQRNHAEILSANNHLEAAQLMNTLLRKDLELQK 119 Query: 127 SQPEKSYSERQLYESALNRM--VREIAAVNSIS--EPEAINLIE 166 + + + + Q+ + + V EIA E E ++ Sbjct: 120 DEKKITSQDSQILQQLSTIILDVLEIALKKPKDTIEKEIYKRVQ 163 >gi|225570940|ref|ZP_03779963.1| hypothetical protein CLOHYLEM_07044 [Clostridium hylemonae DSM 15053] gi|225160402|gb|EEG73021.1| hypothetical protein CLOHYLEM_07044 [Clostridium hylemonae DSM 15053] Length = 169 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 9/161 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE---FFVIAFDKDKMCLKVPVGKAIDIGM 69 F GE+IV +GV + E + G + + ++ VPV I M Sbjct: 1 MFDVGEYIVCGRYGVCRVKETGPVHITGAPRKRLYYTLVPVYDSNSRAYVPVDS-EKIIM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 R + + + + +R + + D ++++ ++R Sbjct: 60 RPVISGEQANELVDHINDIDALWIQDEKKREAAFKEALYKCDCREWIKIIKTIYRRRQDR 119 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + + + + A +R+ E+A + + E I Sbjct: 120 IAQGKKVTAGDERYLHMAQDRLYGELAVALGMKKEEVEAYI 160 >gi|226322661|ref|ZP_03798179.1| hypothetical protein COPCOM_00433 [Coprococcus comes ATCC 27758] gi|225208998|gb|EEG91352.1| hypothetical protein COPCOM_00433 [Coprococcus comes ATCC 27758] Length = 173 Score = 67.5 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 9/172 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDIGM 69 + G+ IVY G+ +TEI ++ G+ + ++++ + + + PV I M Sbjct: 1 MYEVGDLIVYGRTGICEVTEITTLKMDGVPKDKLYYILRPVREKRGKVFTPVDN-EKIVM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----R 124 R++ E ++ + + +R ++Y + S +++ L+ R Sbjct: 60 RRVISKEEAEELIREIPQIEGLWIGSEKQREEKYKECMKSCKCAEWVRIIKTLYQRKMSR 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 + + ++ + A + E++ I E + I ++ Sbjct: 120 LKQGKKITATDERYLRMAEGNLYSELSIALGIPESGMEDYIMNQINETEEPV 171 >gi|325681467|ref|ZP_08160993.1| CarD-like protein [Ruminococcus albus 8] gi|324106957|gb|EGC01247.1| CarD-like protein [Ruminococcus albus 8] Length = 164 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 5/156 (3%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG-MKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 F TGE IVY + GV + EI + G +++ + VPV + MRK Sbjct: 1 MFDTGEIIVYGSSGVYRVAEIGGIAIKGCEGRDYYTLEPVFGSGTSYVPVD--TGVFMRK 58 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRR-AQE-YDAKINSGDLIAIAEVVRDLHRTDSQP 129 + A V + + + + S R +E Y A + + D + +++ + Sbjct: 59 VMTADEVNDLIDRIPAISGDGFSSTSPRLVKEHYSASMKTHDTDKMIGMIKQIWEKGEHK 118 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + S E+Q E A N + E + I E I Sbjct: 119 KLSRIEQQYMEQAENLINSEFSVALGIPREEVAGYI 154 >gi|167768343|ref|ZP_02440396.1| hypothetical protein CLOSS21_02899 [Clostridium sp. SS2/1] gi|167709867|gb|EDS20446.1| hypothetical protein CLOSS21_02899 [Clostridium sp. SS2/1] gi|291560315|emb|CBL39115.1| Transcriptional regulators, similar to M. xanthus CarD [butyrate-producing bacterium SSC/2] Length = 166 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 9/161 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIA-FDKDKMCLKVPVGKAIDIGM 69 ++ G++++ G+ I ++ +++G E++ +A ++ + +PV + Sbjct: 1 MYKKGDYVIKIPEGICEIEDVGCLDMSGVNKDKEYYALAPINQKGSKIYIPVDNVHG-RI 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----R 124 R + +K + R QEY A I SGD IA +++ ++ R Sbjct: 60 RNIISKEDAIAFIKSMPDIDEKDIQNEKMREQEYKAVILSGDNEKIASILKLIYSRKQER 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + + S ++ + ++ A + E++ V ++ I Sbjct: 120 AEQGKKLSSTDERYFKLAEYMLFSELSFVLNVPREHIEQYI 160 >gi|291544413|emb|CBL17522.1| Transcriptional regulators, similar to M. xanthus CarD [Ruminococcus sp. 18P13] Length = 173 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 9/171 (5%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFVIA--FDKDKMCLKVPVGKAIDIG 68 F G ++Y A G+ I +++ G+ + E++ + + +PV A Sbjct: 1 MEFEIGSWVMYSATGICRILSREKKCFDGVHETEYYKLEPLREGTHSVYYIPVLTAA-SK 59 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS- 127 +R L +A V ++ ++ + R + + + D + +V+ LH Sbjct: 60 LRPLMDAPQVHELIQHIQDLPCRWCADRNARKELFHHILRQDDPKQLLAMVKSLHTQQEA 119 Query: 128 ----QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + S S+ SA + E A + E L++ L + S Sbjct: 120 QSRAGKKLSSSDEAALHSAEQILNEEFALALHMQPGEIPLLVQQALHTTSR 170 >gi|293374795|ref|ZP_06621100.1| CarD-like protein [Turicibacter sanguinis PC909] gi|325845328|ref|ZP_08168630.1| CarD-like protein [Turicibacter sp. HGF1] gi|292646591|gb|EFF64596.1| CarD-like protein [Turicibacter sanguinis PC909] gi|325488647|gb|EGC91054.1| CarD-like protein [Turicibacter sp. HGF1] Length = 164 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 70/165 (42%), Gaps = 8/165 (4%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIA-FDKDKMCLKVPVGKAIDIGMR 70 FR ++IVY GV + IKE+ F++++ +M +KV V + +R Sbjct: 1 MFRIDDYIVYGLTGVCKVKGIKEECFLNYPAQSFYILSPISSPEMTIKVSVAHGNET-IR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + V + ++ + + R Q++ + G+ + +V+ ++ + + Sbjct: 60 MVHSKDEVNQLIQGIPDLELLWIKDDRERNQKFRCMVKQGNCSDLITIVKTIYSYRTLED 119 Query: 131 -----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 + S+ +++E A + E+ + ++ E N IE ++ Sbjct: 120 FKGTRLNKSDDEVFEIAEKLLNEELGFILDLNPEEIPNYIEQYIA 164 >gi|238924916|ref|YP_002938432.1| hypothetical protein EUBREC_2567 [Eubacterium rectale ATCC 33656] gi|238876591|gb|ACR76298.1| Hypothetical protein EUBREC_2567 [Eubacterium rectale ATCC 33656] gi|291525961|emb|CBK91548.1| Transcriptional regulators, similar to M. xanthus CarD [Eubacterium rectale DSM 17629] Length = 164 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 9/165 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIA-FDKDKMCLKVPVGKAIDIGM 69 F G++++ +G+ I+EI E +++G K +F++ +++ + +PV A + Sbjct: 1 MFEIGDYVLNATNGICKISEIVELDMSGDKQLKSYFLLRPVEEENDRVYIPVDNADK-RI 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 RK+ L V + R Y + S + ++ +++ LH + Q Sbjct: 60 RKVITQDEALAVLDRVPEIEALAVNNEKERETRYKEAVRSCEPDSVISLLKCLHIRNEQR 119 Query: 130 EKSYSERQLYES-----ALNRMVREIAAVNSISEPEAINLIEVNL 169 ++ + + A + + E+A V + E ++I L Sbjct: 120 AQAGKKSTAVDERYGKMAEHNLNAELAFVLEKDKQEIKDIIHDML 164 >gi|325662044|ref|ZP_08150663.1| hypothetical protein HMPREF0490_01401 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471707|gb|EGC74926.1| hypothetical protein HMPREF0490_01401 [Lachnospiraceae bacterium 4_1_37FAA] Length = 164 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 60/147 (40%), Gaps = 2/147 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC-LKVPVGKAIDIGMR 70 + + GE +V+ GV + +I + E+ MK ++ + + + + +P+ K + +R Sbjct: 2 KTYHIGEKVVHCPEGVCEVEDICQIEMNKMKKYYYRLKPIQSNVKVVYIPIDKVE-MHVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L +E+ + + + +R + + D + + ++++ R + Sbjct: 61 PLKTKQELEKIFCIEPEEQLICYRNPQKRMDIQNQAVREDDAVMLIQLIKMYRRKRQKNH 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSIS 157 S + + + A + E++ V Sbjct: 121 ISLGDARWLKEAECYLFSEMSEVLECD 147 >gi|291527305|emb|CBK92891.1| Transcriptional regulators, similar to M. xanthus CarD [Eubacterium rectale M104/1] Length = 164 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 9/165 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIA-FDKDKMCLKVPVGKAIDIGM 69 F G++++ +G+ I+EI E +++G K +F++ +++ + +PV A + Sbjct: 1 MFEIGDYVLNATNGICKISEIVELDMSGDKQLKSYFLLRPVEEENDRVYIPVDNADK-RI 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 RK+ L V + R Y + S + ++ +++ LH + Q Sbjct: 60 RKVITQDEALAVLDRVPEIEALAVNNEKERETRYKEAVRSCEPDSVISLLKCLHIRNEQR 119 Query: 130 EKSYSERQLYES-----ALNRMVREIAAVNSISEPEAINLIEVNL 169 ++ + + A + + E+A V E ++I L Sbjct: 120 AQAGKKSTAVDERYGKMAEHNLNAELAFVLEKDRQEIKDIIHDML 164 >gi|331085895|ref|ZP_08334978.1| hypothetical protein HMPREF0987_01281 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406818|gb|EGG86323.1| hypothetical protein HMPREF0987_01281 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 164 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 60/147 (40%), Gaps = 2/147 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC-LKVPVGKAIDIGMR 70 + + GE +V+ GV + +I + E+ +K ++ + + + + +P+ K + +R Sbjct: 2 KTYHIGEKVVHCPEGVCEVEDICQIEMNKIKKYYYRLKPIQSNVKVVYIPIDKIE-MHVR 60 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L +E+ + + + +R + + D + + ++++ R + Sbjct: 61 PLKTKQELEKIFCIEPEEQLICYRNPQKRMDIQNQAVREDDAVMLIQLIKMYRRKRQKNH 120 Query: 131 KSYSERQLYESALNRMVREIAAVNSIS 157 S + + + A + E++ V Sbjct: 121 ISLGDARWLKEAECYLFSEMSEVLECD 147 >gi|288870616|ref|ZP_06114718.2| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866520|gb|EFC98818.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 187 Score = 64.8 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 12/167 (7%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKA 64 + F+ +H+VY +G+ + I E+ + + ++ + +K + PV K Sbjct: 16 SKEVKMFQVNDHVVYGNYGICVVKAIGSLEMDSVVKDRLYYTLEPLYSEKNTIYTPVDKE 75 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 MR + + ++ + ++ R Q Y + + + + +++ ++ Sbjct: 76 DS--MRCAITEQEAWKLIDGIQAQEMIQVADEKRAEQAYREIMRTNECSGWSRIIKTIYL 133 Query: 125 TDSQPEKSYSERQL------YESALNRMVREIAAVNSISEPEAINLI 165 + + + +R A + + RE+AA + + + ++I Sbjct: 134 KNRKR-LAEGKRYTAKDDIYLRLAEDFLFRELAAALKVKKEDVESII 179 >gi|239627020|ref|ZP_04670051.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517166|gb|EEQ57032.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 166 Score = 64.4 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 9/163 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMR 70 F G+ I Y A GV + I + + + ++ + F+ ++ + +PV + MR Sbjct: 1 MFEKGDFIFYGAVGVCQVDGISKPDFSDNDKLYYRLIPKFEPNRS-ICIPVD-TTKVLMR 58 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + + R Y SG +A +++++ + + + Sbjct: 59 CIMTRREAQNFILSWPNVQCKGYRNDKERPLIYKQIFQSGSCTELAAMIKEILQMEQSRK 118 Query: 131 -----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 + ER ++A + E+AA I I Sbjct: 119 SKGNALNIRERDGVKTARKLLFGELAAALDIGPDMVPAYIHNV 161 >gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] Length = 1198 Score = 64.4 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ +I +QEVAG K ++F++ + +D L VP + I R + Sbjct: 499 FKPGDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYAQDD-KLYVPFEQVDKI-TRYIG 556 Query: 74 EAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 R R+ WSR RA++ K+ + ++ R + Sbjct: 557 PDGSTPRL-------TRLNSADWSRACTRARKSAQKMA----FDLVDLY---TRRSTIKG 602 Query: 131 KSYS 134 S+S Sbjct: 603 FSFS 606 >gi|110801919|ref|YP_697579.1| CarD family transcriptional regulator [Clostridium perfringens SM101] gi|110682420|gb|ABG85790.1| transcriptional regulator, CarD family [Clostridium perfringens SM101] Length = 160 Score = 64.0 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 13/157 (8%) Query: 26 GVGTITEIKEQE-VAGMKLEFFVI-----AFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79 GV + +I ++ + ++ E++V+ + K + +K+PV I MR L V Sbjct: 6 GVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTV-IKIPVDN-KKISMRTLLSKEDVN 63 Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY-----S 134 + + + +R E+ + SG+ + ++R ++ + + Sbjct: 64 SIINSIPETETLWIDNDRQRNDEFKTILRSGNCDDLIVLIRSIYLDKKKRKLDGKKACKG 123 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ ++A + E A + I E + I+ ++ Sbjct: 124 DDEIMQTAEKLIDEEFAVILDIRPEEVKSYIKSHIPQ 160 >gi|302385129|ref|YP_003820951.1| transcriptional regulator, CarD family [Clostridium saccharolyticum WM1] gi|302195757|gb|ADL03328.1| transcriptional regulator, CarD family [Clostridium saccharolyticum WM1] Length = 170 Score = 64.0 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMK--LEFFVIA--FDKDKMCLKVPVGKAIDIG 68 ++ G++IV+ + G+ + + E+A M ++ + F K PV + Sbjct: 1 MYQVGDNIVFGSKGICRVEHVGVLEIADMPRNKMYYTLNPYFIKGS-KFYTPVDN-DKVI 58 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH----- 123 MR + + + ++ + RR EY + D + ++++ ++ Sbjct: 59 MRPVIPKDEAMKLIDDIKNIDSLWVADEKRRESEYKEAMKRCDCRELVKIIKTIYFRKQS 118 Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 R + + + + ++ A E+A ++ + Sbjct: 119 RLKDGKKLTTIDTKYFKLAEENFYGELAISLNMDVKAVKEFV 160 >gi|218134019|ref|ZP_03462823.1| hypothetical protein BACPEC_01909 [Bacteroides pectinophilus ATCC 43243] gi|217991394|gb|EEC57400.1| hypothetical protein BACPEC_01909 [Bacteroides pectinophilus ATCC 43243] Length = 191 Score = 64.0 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 9/172 (5%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAI 65 R+ R F G+ +V +GV I +I + + ++ ++++ + + +PV Sbjct: 17 REMERHMFEKGDMVVCGNNGVCRIEKISKLDSIDSEVLYYIMQPVYEKSSTVYIPVEG-H 75 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 +R + +K + + ++ R +Y A + ++R L+R Sbjct: 76 STPIRNIMTKDEAMDFIKKIPTISEIELAGDRERESQYKACMEPAQAEGWVRIIRTLYRR 135 Query: 126 DSQPE------KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + + ER + + A N + E+A + + E IE L Sbjct: 136 NEERAAAGKKTINMDERYM-KMAKNCLYGELAVSLGMKKDEVEAFIESILDK 186 >gi|255280659|ref|ZP_05345214.1| transcriptional regulator, CarD family [Bryantella formatexigens DSM 14469] gi|255268596|gb|EET61801.1| transcriptional regulator, CarD family [Bryantella formatexigens DSM 14469] Length = 222 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 66/182 (36%), Gaps = 9/182 (4%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEI---KEQEVAGMKLEFFVIAFDKDKMCLK 58 ++ F ++V GV + ++ ++ + K+ + +I + + Sbjct: 40 VSERNWQQEGTMFEVNNYVVKYNSGVCKVEDVLDGQKADFKDNKMYYLLIPLAEKSARIY 99 Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118 +P+ + + +R++ + + R EY + S D + ++ Sbjct: 100 IPLERGEKV-LRRVLTYEEATELISRIPSIGMEFSQNDKLRELEYKEALQSLDCERMVQI 158 Query: 119 VRDLHRTDSQPEK-----SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++D++ + E + ++ + + A + + E+A E + LI + + Sbjct: 159 IKDIYGRKKRREIRGKKTTATDEKYFRQAEHALYMELAFSLGCREEDIPGLITEKIKTGD 218 Query: 174 SK 175 + Sbjct: 219 KR 220 >gi|302876047|ref|YP_003844680.1| transcription factor CarD [Clostridium cellulovorans 743B] gi|307686765|ref|ZP_07629211.1| transcription factor CarD [Clostridium cellulovorans 743B] gi|302578904|gb|ADL52916.1| transcription factor CarD [Clostridium cellulovorans 743B] Length = 174 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 15/171 (8%) Query: 13 GFRTGEHIVYPAHGVGTI--TEIKEQEVAGMKLEFFVI-AFDKDKMCLKVPVGKAIDIGM 69 F+ ++I+Y +GV + I + K +++ + K+ + PV + M Sbjct: 1 MFKINDYIIYGGNGVCRVLDIGIPAINIGDSKRKYYTLQQVYKNGSVIYTPVDNDRVV-M 59 Query: 70 RKLSEAHFVERALKLVRGKA---RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH--- 123 RKL + + + M R +E K D + ++++ + Sbjct: 60 RKLISKEEAKELTRNLDSIEILLIDDDKMLEERYKEVMNKY---DCTEMIKIIKTSYSRT 116 Query: 124 --RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 R + + + + + + A + E+A + ++ + + I+ + Sbjct: 117 KERLEQGKKNTMIDDKYLKIAEENLFGELAITLNRTKEQIKDFIDQQVRKP 167 >gi|110798653|ref|YP_694714.1| CarD family transcriptional regulator [Clostridium perfringens ATCC 13124] gi|110673300|gb|ABG82287.1| transcriptional regulator, CarD family [Clostridium perfringens ATCC 13124] Length = 160 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 13/157 (8%) Query: 26 GVGTITEIKEQE-VAGMKLEFFVI-----AFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79 GV + +I ++ + ++ E++V+ + K + +K+PV I MR L V Sbjct: 6 GVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTV-IKIPVDN-KKISMRTLLSKEDVN 63 Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY-----S 134 + + + +R E+ + SG+ + ++R ++ + + Sbjct: 64 SIINSIPETETLWIDNDRQRNDEFKTMLRSGNCDDLIVLIRSIYLDKKKRKLDGKKACKG 123 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + ++ ++A + E A + I E + I+ ++ Sbjct: 124 DDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 160 >gi|197303581|ref|ZP_03168619.1| hypothetical protein RUMLAC_02307 [Ruminococcus lactaris ATCC 29176] gi|197297315|gb|EDY31877.1| hypothetical protein RUMLAC_02307 [Ruminococcus lactaris ATCC 29176] Length = 162 Score = 62.5 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 12/162 (7%) Query: 17 GEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKLS 73 G+ +VY G+ + EI + A K +++ + + K VP + +R+ Sbjct: 5 GDAVVYKCRGMYKVEEIGTLDFSFADSKKKYYTLQSIEDAKDKAYVPTD--DEKNIRRPV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L V + R QEY I+ V+R L+ + Sbjct: 63 SFEEAKHLLDCVDKIEVLSVKNEKFREQEYKDCISDFKPENWVRVLRTLYTRTKRRGSMT 122 Query: 134 S-ERQ---LYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 S +++ L E A + E+ V IS E L+ NL+ Sbjct: 123 SMDKKYQMLLEHA---LYSEMQYVLGISAAELSRLLTSNLAK 161 >gi|269216663|ref|ZP_06160517.1| conserved hypothetical protein [Slackia exigua ATCC 700122] gi|269129897|gb|EEZ60980.1| conserved hypothetical protein [Slackia exigua ATCC 700122] Length = 205 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 11/164 (6%) Query: 14 FRTGEHIVYPAHGVGTITEI-KEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 + + +VY +GV +T+ + G ++V+ K + VP+ +R Sbjct: 35 YSVNDRVVYANYGVCIVTKTNEPLSFGGADRRYYVLEATRKRGGTVYVPMDHEDF--LRP 92 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQE--YDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + V + + E + + D + V + + ++ Sbjct: 93 ILSRNAVLDLVDRFPLIETDDFKDSNSHTVEDHFKQMLRENDCLQAMRVAKTMRERIAEQ 152 Query: 130 EK-----SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 E S +LY+ A+ ++ E +A + E E + ++ + Sbjct: 153 ESKRHIPSSMYTRLYDQAVGLVLSEFSAALDMPEDEVMRIMHES 196 >gi|325845329|ref|ZP_08168631.1| CarD-like protein [Turicibacter sp. HGF1] gi|325488648|gb|EGC91055.1| CarD-like protein [Turicibacter sp. HGF1] Length = 164 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 65/168 (38%), Gaps = 16/168 (9%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE-FFVIA-FDKDKMCLKVPVGKAIDIGMR 70 FR ++I+Y GV + I+E++ + F+V+ +M +K+PV I +R Sbjct: 1 MFRMNDYIMYGLTGVCKVIGIEEEKFLDYPQQSFYVLEPVFSPQMTIKIPVLNTIK-NIR 59 Query: 71 KLSEAHFVERALKLVRGKARVKRTMW--SRRAQEYD--AKINSGDLIAIAEVVRDLHRTD 126 + V+ ++ K +W R + + + + V++ ++ Sbjct: 60 PIHSTDEVKELIQ----KIPDLELLWIFDERERNNLFRQMLRNANCDEWIIVIKTIYSYK 115 Query: 127 -----SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + ++ ++++ A + E V +I+ + I + Sbjct: 116 YLDNYKGKRLNKNDDEIFKIAEKLLNEEFGFVLNINPDDVPTYIGECI 163 >gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM 16511] gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM 16511] Length = 998 Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R GE++V+ HGVG I+++EV G EF V+ + + L VPV I R +++ Sbjct: 360 RPGEYVVHETHGVGIFKGIEKREVLGATREFVVVQYQGED-TLLVPVENLEVID-RYIAD 417 Query: 75 AHFVERA-------LKLVRGKARVK 92 + + K ++GK R K Sbjct: 418 SGTLPALDRLGKASFKRLKGKVREK 442 >gi|289450323|ref|YP_003474448.1| CarD-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184870|gb|ADC91295.1| CarD-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 66/162 (40%), Gaps = 11/162 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM--KLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 + G++I+Y GV + I + + G+ + +++ + D + + VP+ ++ MR Sbjct: 1 MYNIGDYIIYGNSGVCKVITISKAPIEGLNPERDYYTLQPIFDSVMIYVPID--TEVFMR 58 Query: 71 KLSEAHFVERALKLVRG-KARVKRTMWSRR-AQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 L VE L+ + K + T S A EY INS + +++ + + + + Sbjct: 59 PLMTVLEVEDLLRKIPDIKVSIISTNNSTELAGEYRKLINSHKSKDLVRLIKSIKKKNVK 118 Query: 129 PE-----KSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 E ++ + + A E++ + I + Sbjct: 119 AEKEGRRIGLTDMRFLKQAEELFFGELSIILDIPIENVSEYV 160 >gi|83952971|ref|ZP_00961698.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] gi|83835633|gb|EAP74935.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] Length = 41 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 29/38 (76%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46 + + FR +++VYPAHGVG I I+EQE+AG++LE F Sbjct: 4 SKKSEFRPNDYVVYPAHGVGQIVSIEEQEIAGIELELF 41 >gi|332652511|ref|ZP_08418256.1| putative transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] gi|332517657|gb|EGJ47260.1| putative transcriptional regulator, CarD family [Ruminococcaceae bacterium D16] Length = 171 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 16/171 (9%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVA-GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 F G IVY GV + + G K+E++ + + + VPV + MR Sbjct: 1 MMFSIGSLIVYSGTGVCRVEAVGPPPFDPGSKVEYYTLIPLQSTGTIYVPVD--TKVFMR 58 Query: 71 KLSEAHFVERAL----KLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + + + ++ + + + M ++R + + S + ++++ + Sbjct: 59 PILSREAAQELIRRIPEIQQAQLEHLDYRMLAQRYRSFLD---SHSCEDLVQLIKTAYTK 115 Query: 126 DSQPEKSYS-----ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 +S ++ + A + E++A I E + I + Sbjct: 116 SRANTRSGKKPSKVDQDFQKRAEFLLHDELSAALDIPFDEVGDYITQQVEQ 166 >gi|153854148|ref|ZP_01995456.1| hypothetical protein DORLON_01447 [Dorea longicatena DSM 13814] gi|149753197|gb|EDM63128.1| hypothetical protein DORLON_01447 [Dorea longicatena DSM 13814] Length = 177 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 9/171 (5%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD-KMCLKVPVGKAID 66 + + F+ G+++ + GV + I + ++ E++ + D + PV D Sbjct: 6 EQEAEMFKIGDYVAHYKEGVCEVVNIGKIDMGSSDKEYYTLKPVYDAGGTVYTPVDNKRD 65 Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 +RKL E +K + + T +R Y + +++ + + Sbjct: 66 Q-IRKLITKEEAENLIKEMPKIDIIGVTNEKQREGMYKNALLHNQCREWISLIKTSYGRN 124 Query: 127 SQPEK------SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + + ER + SA + E+A V I + ++ +L + Sbjct: 125 KKRLLAGKKTINVDERYM-SSAEKFLYGELAVVMEIPRDKVSGYVKEHLDA 174 >gi|78777763|ref|YP_394078.1| transcription-repair coupling factor [Sulfurimonas denitrificans DSM 1251] gi|78498303|gb|ABB44843.1| Transcription-repair coupling factor [Sulfurimonas denitrificans DSM 1251] Length = 990 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 44/160 (27%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K + + G+++V+ +GVG I++ E+ G +F VI + D + +PV Sbjct: 348 RKSSILLDDLKVGDYVVHEDYGVGIFEGIEQTEILGGVKDFIVIKYIGDD-KILLPVENL 406 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I R ++ V K+ G + E V+ Sbjct: 407 DAID-RYIASGGSVP-----------------------VLDKLGKGSFGKLKESVK---- 438 Query: 125 TDSQPEKSYSERQLYESALNRM----VREIAAVNSISEPE 160 ++L E A + RE+ I+ E Sbjct: 439 -----------KRLLEIAGQIVNTAAARELITAPKINVDE 467 >gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c] gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c] Length = 1215 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ G+ +V+ AHGVG E+ + VAG K E+ V+ + K L VP Sbjct: 521 MPSRRRKGIDPLALAVGDLVVHEAHGVGRYIEMVTRTVAGAKREYLVLEYAKGD-RLYVP 579 Query: 61 VGKAIDI 67 + Sbjct: 580 TDALEQV 586 >gi|291551083|emb|CBL27345.1| CarD-like/TRCF domain [Ruminococcus torques L2-14] Length = 159 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 17 GEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKLS 73 G+ +VY GV + E+ + + + K +++ + D + VP+ D +R+ Sbjct: 5 GDAVVYKCRGVYKVEEVGKLDFSFVDGKKDYYTLQSIDNQRDKAYVPID--DDKNIRRPV 62 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + + R QEY I+S +V++ L+ + Sbjct: 63 SEQKAKELLDNLAEVGILNVKNEKYREQEYKDCISSFCPENWVKVLKTLYSRTKRRGSMT 122 Query: 134 S-ERQ---LYESALNRMVREIAAVNSISEPEAINLIEVN 168 S +++ L E A + E+ V I E LI+ + Sbjct: 123 SMDKKYQMLLEHA---LSSEMNYVLGIPAGEMTELIKKS 158 >gi|225389995|ref|ZP_03759719.1| hypothetical protein CLOSTASPAR_03745 [Clostridium asparagiforme DSM 15981] gi|225043952|gb|EEG54198.1| hypothetical protein CLOSTASPAR_03745 [Clostridium asparagiforme DSM 15981] Length = 145 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 56/138 (40%), Gaps = 9/138 (6%) Query: 37 EVAGMKLEFFVI--AFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRT 94 + +G ++ + +F+ + + +PV + MR++ ER + A Sbjct: 2 DFSGSDRLYYSLTPSFE-NDTTIYIPVDS-DKVLMREIMTKQEAERFVLSWPDIACEPHA 59 Query: 95 MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-----SQPEKSYSERQLYESALNRMVRE 149 + +A+ + + SG+ + + +++++ R S S ++R + + A + E Sbjct: 60 NYKEQAKAHQQILKSGNCLELGSMIKEITRQSISGKRSGKAMSGNQRDVIKIAQKLLYGE 119 Query: 150 IAAVNSISEPEAINLIEV 167 ++ I + IE Sbjct: 120 LSVALDIEPAKIPEYIEK 137 >gi|325265224|ref|ZP_08131950.1| hypothetical protein HMPREF0240_04239 [Clostridium sp. D5] gi|324029628|gb|EGB90917.1| hypothetical protein HMPREF0240_04239 [Clostridium sp. D5] Length = 168 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 12/160 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 GE +VY G+ + ++ + +++ + + + VP + +RK Sbjct: 2 NPGEVVVYKCKGMYKVEDVGTLNFGFVDRRKKYYTLQSMEDSRERAYVPTEDKEN--IRK 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + + R +EY I+ V++ LH+ Sbjct: 60 PVSRDEAIELIHELDEIEVLWIQNEKLREREYKDCISGYSPKDWVRVLKTLHKRTISRGS 119 Query: 132 --SYSER--QLYESALNRMVREIAAVNSISEPEAINLIEV 167 S ++ Q+ E A + E+ I + + + I+ Sbjct: 120 ITSMDKKYQQMIEHA---LYSELGYALGIPQNKVEHFIQE 156 >gi|223984021|ref|ZP_03634178.1| hypothetical protein HOLDEFILI_01468 [Holdemania filiformis DSM 12042] gi|223964006|gb|EEF68361.1| hypothetical protein HOLDEFILI_01468 [Holdemania filiformis DSM 12042] Length = 196 Score = 57.8 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG-MKLEFFVIAFDKDKMCLKV-PVGKA 64 + F+ +++ Y + G+ + +I ++E+ +V++ V P Sbjct: 27 KGGTSFMFKEKDYVRYGSRGIFQVEQIIKKELKPRHPETCYVLSSVYGIHTQIVTPASNP 86 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMW--SRRAQE--YDAKINSGDLIAIAEVVR 120 +R++ ++R + + + + W +R +E Y + + GD +A+++ Sbjct: 87 Q---LRRVMNREEIDRMID----EMPLLESDWIDDKRKREETYRSILEEGDGHKLAQLII 139 Query: 121 DLH-----RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++ + + S ++ ++ E A + + EI+ I + E + + L +K Sbjct: 140 SIYSQKQDKLKDRKSLSRTDAEMLERAEDLLHEEISLSFKIKKEEVADYLLSRLKNK 196 >gi|291548411|emb|CBL21519.1| Transcriptional regulators, similar to M. xanthus CarD [Ruminococcus sp. SR1/5] Length = 183 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 13/171 (7%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGM--KLEFFVIAFDKD--KMCLKVPVG 62 + F TGE++VY G+ +T + V G + ++V+ + PV Sbjct: 1 MKGSGKMFETGEYVVYGRTGICQVTGVTTMRVDGSSGEKLYYVLR-PGGETDGKIFTPVE 59 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 + +R + ER + + + R Y I + + + +++ + Sbjct: 60 GGKQV-LRGIITREEAERLIDEIPSIETLSIENEKFREDSYKKCIRTCECRDLLRIIKTI 118 Query: 123 HRTDSQPEKSYSER------QLYESALNRMVREIAAVNSISEPEAINLIEV 167 + S+ ++ + + A + + E + + I + + IE Sbjct: 119 YVRKQAR-LSHGKKTTATDERYLKLAEDHLYSEFSMLLDIPKEHMADYIEQ 168 >gi|160937901|ref|ZP_02085259.1| hypothetical protein CLOBOL_02795 [Clostridium bolteae ATCC BAA-613] gi|158439127|gb|EDP16881.1| hypothetical protein CLOBOL_02795 [Clostridium bolteae ATCC BAA-613] Length = 205 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 66/173 (38%), Gaps = 10/173 (5%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKE--QEVAGMKLEFFVIA-FDKDKMCLKVPVGKAI 65 + ++ G++I+Y GV + +I + ++V+ + + + PV Sbjct: 34 GGKIMYQKGQYIIYGIRGVCEVMDIITIDRPDGPKDRLYYVLRPYYQQDSKIVTPVDSEK 93 Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 I R L + + ++ T +R + Y + + D +++ L+ Sbjct: 94 TI-TRPLLSKEEALELIDKISDVKEMEVTNDKQREERYKEALKTCDCRVWISMIKALYLR 152 Query: 126 DSQ-----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI-EVNLSSK 172 + + + + +++A + + E+A + + E ++ I E L+ Sbjct: 153 RKDRLEQGKKMTDLDERYFKTAEDNLYSELALSLGMKKDEMVSYITERVLAEA 205 >gi|320528182|ref|ZP_08029347.1| hypothetical protein HMPREF9430_01471 [Solobacterium moorei F0204] gi|320131530|gb|EFW24095.1| hypothetical protein HMPREF9430_01471 [Solobacterium moorei F0204] Length = 169 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 21/178 (11%) Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIG 68 M ++ + +VY V IT K + G + F + ++VPV Sbjct: 1 MISLYKVKDIVVY-RRDVCRITGKKRSDFTGEQCYILEPYFPTSGSVSIQVPVSN-KAGH 58 Query: 69 MRKLSEAHFVERA------LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV--- 119 +R L + + L+ + K ++ Y + + D+ + ++ Sbjct: 59 IRDLITKEEINQLIIDTPDLETLESKPANMKSQ-------YASLLKGNDISELVRIIKTS 111 Query: 120 --RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175 R+ R + + + + + + A + E++ V +S + E ++ S + Sbjct: 112 YGRNQERLEQHKKLASIDDEYLQIAEKYLYEELSVVLDLSIEDTKEYFEKEVAKLSLE 169 >gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca glomerata] gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca glomerata] Length = 1238 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ R G+ +V+ AHGVG E+ + VAG E+ V+ + K L VP Sbjct: 547 MPHRRRKGIDPLALRAGDLVVHDAHGVGRYIEMVTRTVAGATREYLVLEYAKGD-RLYVP 605 Query: 61 VGKAIDI 67 + + Sbjct: 606 TDQLEQV 612 >gi|323483615|ref|ZP_08088999.1| hypothetical protein HMPREF9474_00748 [Clostridium symbiosum WAL-14163] gi|323692577|ref|ZP_08106810.1| hypothetical protein HMPREF9475_01673 [Clostridium symbiosum WAL-14673] gi|323403042|gb|EGA95356.1| hypothetical protein HMPREF9474_00748 [Clostridium symbiosum WAL-14163] gi|323503443|gb|EGB19272.1| hypothetical protein HMPREF9475_01673 [Clostridium symbiosum WAL-14673] Length = 163 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 7/156 (4%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-CLKVPVGKAIDIGMRKLSEA 75 G+++V+ + V + ++ E + G K +F++ +DK + VP+ K +R + Sbjct: 4 GDYMVHWSGKVCMVEDMAEMNLTGTKRMYFILTPVRDKAEKIYVPIEKTEGT-LRPVLSR 62 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE----- 130 +R ++ +RAQEY S D + + + ++L++ Sbjct: 63 KEAVSLAGRIRDIEPLQIKDEKQRAQEYKTAYYSQDYLNLVRIAKELYQRKESRGREGKK 122 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 + Q+ E+A + E N++E Sbjct: 123 LPSKDAQMMLLVEKTFEEEMAVALGVETSEVKNMLE 158 >gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ +EI QEV G + ++F++ + L VP+ + I R + Sbjct: 532 FKPGDYVVHATHGIALFSEIARQEVGGKERDYFLLEYADGD-KLYVPLEQVDRI-TRYVG 589 Query: 74 EAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKIN 108 R R+ W+R +A++ K+ Sbjct: 590 PDGDKPRL-------TRLNTADWTRATNKARKNAKKLA 620 >gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] Length = 1192 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ +EI QEV G + ++F++ + L VP+ + I R + Sbjct: 510 FKPGDYVVHATHGIALFSEIVRQEVGGKERDYFMLEYAGGD-KLYVPLEQVDRI-TRYVG 567 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 568 PDGDNPRL-------TRLNTADWSR 585 >gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] Length = 1147 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ T I QEVAG + ++F++ + D L VP+ + I R + Sbjct: 484 FKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDD-KLYVPLEQVDRI-TRYVG 541 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 542 PDGNNPRL-------TRLNTADWSR 559 >gi|295103998|emb|CBL01542.1| CarD-like/TRCF domain. [Faecalibacterium prausnitzii SL3/3] Length = 167 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 11/165 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIA--FDKDKMCLKVPVGKAIDIGMR 70 F+ G +VY GV + + + E++ + F +P K + +R Sbjct: 4 FQAGALVVYGNLGVHEVEGVGLRRFCDESAREYYTLRPYFSDSHDRSYIPTEK--EAALR 61 Query: 71 KLSEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 ++ A E L ++ K + + + A+ Y A +++ D + ++L + +Q Sbjct: 62 PVTPAQQAEADLARIKAEKLPIPAGVQTALAEHYQALLHTNDFYQYLTLFKELGQKQTQQ 121 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + + + Y+ + E+A S+ EA + L Sbjct: 122 QSRGRKINAMDTYFYQMVERVLREELAVAFGESQQEAGRRLLEVL 166 >gi|225570402|ref|ZP_03779427.1| hypothetical protein CLOHYLEM_06502 [Clostridium hylemonae DSM 15053] gi|225160773|gb|EEG73392.1| hypothetical protein CLOHYLEM_06502 [Clostridium hylemonae DSM 15053] Length = 168 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 ++ + +VY V I +I + ++ + + V + MR + Sbjct: 1 MYKVNDVVVYGCSKVCFIKKIGTPDFMSKPQNYYWLQ-PVGDTTTMLYVKTEHEDKMRSI 59 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV-----VRDLHRTDS 127 + ++ + + + R +EY + S D ++ V + + Sbjct: 60 LTKGQADELMRELPEMEEMYDSSNKVRDREYIQVMKSRDCGEWLKMWKGITVEKMRKEQD 119 Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 + S+ + + + E +AV ++ + ++ + +L + Sbjct: 120 GKSLNASDESNLKRVQDCISSEFSAVFQTTKDKIVSRMRHSLGA 163 >gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] Length = 1187 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 12/98 (12%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+++V+ HG+G I QEV G++ ++F++ + L VP+ + I R + Sbjct: 508 YQPGDYVVHATHGIGRFASIVRQEVGGLERDYFLLEYADGD-KLYVPLEQVDRI-TRYVG 565 Query: 74 EAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKIN 108 R R+ WSR RA+ ++ Sbjct: 566 PDGSSPRL-------TRLNTADWSRATVRARNSAKRLA 596 >gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] Length = 1195 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 F+ G+++V+ HGV EI QEV G + ++F++ + L VP+ + I Sbjct: 512 FKPGDYVVHSTHGVALFAEIVRQEVGGKERDYFLLEYAGGD-KLYVPLEQVDRI 564 >gi|227874315|ref|ZP_03992500.1| CarD family transcriptional regulator [Oribacterium sinus F0268] gi|227839803|gb|EEJ50248.1| CarD family transcriptional regulator [Oribacterium sinus F0268] Length = 169 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 9/170 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIA-FDKDKMCLKVPVGKAIDIGM 69 +++G ++VY GV I + G E++++ K + PV A M Sbjct: 1 MYQSGTYVVYGCKGVHKIIGTTHLNLEGIPKDKEYYILQAVKKPDGAVYAPVE-AGKTNM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----R 124 R + E + V ++ +R + I S A+ +V++ L R Sbjct: 60 RSVMTREQAESFMLGVENIHALQCKTPKQREENCRDSIKSCAPDALLQVIKTLMERRVER 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + + + E A + + E++ SI E I + K+ Sbjct: 120 ARQGKKLTLLDLHFMEQAEDILYEELSISLSIPRVEVEERIHAHSPKKAG 169 >gi|229828411|ref|ZP_04454480.1| hypothetical protein GCWU000342_00472 [Shuttleworthia satelles DSM 14600] gi|229793005|gb|EEP29119.1| hypothetical protein GCWU000342_00472 [Shuttleworthia satelles DSM 14600] Length = 224 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 73/185 (39%), Gaps = 12/185 (6%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIA-FDKDKMCLK 58 +K M++ + + +V+ A GV + I Q++ G + E++ + +++ + Sbjct: 31 APARKPVKMKR-YCVDDFLVHEASGVCQVKAIIRQDLMGTGTEREYYDLNPVFENRSHVI 89 Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118 PV +R +S ++ + ++ +RA+ Y + + D + +A + Sbjct: 90 TPVESNRQ-RVRSVSSQRTMKEIFSRLADLELIEIKGDRQRAEYYRQILLNQDPMEMARL 148 Query: 119 VRDLHRTDS------QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 ++ ++ + + S ER + +A ++ E+A + S+ L Sbjct: 149 IKTIYYRNHMRIAQGKKTMSQDERTM-SAAKKKLFDEMAFILKDSQEALEIKFCEILDRD 207 Query: 173 SSKTE 177 E Sbjct: 208 DPSRE 212 >gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1] gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1] Length = 994 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HGVG I++++V G EF VI F +++ L +PV I R ++E Sbjct: 357 KPGDYVVHENHGVGIFKGIEKRDVLGATSEFVVI-FYQNEDSLLIPVSSLEVID-RYVAE 414 Query: 75 AHFVERA-------LKLVRGKARVK 92 + K ++GK R K Sbjct: 415 GGALPVLDRLGKASFKKLKGKVREK 439 >gi|260437232|ref|ZP_05791048.1| transcriptional regulator, CarD family [Butyrivibrio crossotus DSM 2876] gi|292810545|gb|EFF69750.1| transcriptional regulator, CarD family [Butyrivibrio crossotus DSM 2876] Length = 162 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 59/163 (36%), Gaps = 11/163 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC-LKVPVGKAIDIGMRK 71 F+ + +VY +GV ++ I + ++ + +K + PV + MR+ Sbjct: 1 MFQINDLVVYGKNGVCSVKGIGTLSLINNDRIYYTLVPVYNKEEIIYAPVENGRIV-MRE 59 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAK--INSGDLIAIAEVVRDLH-----R 124 + + + + R +E K + + +A +++ ++ R Sbjct: 60 VISREDAKELIDIFPDLEETVVAD--ERDRENCYKQTLLGCNCEKLASMIKTIYNRKCKR 117 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 + + + + + A ++ E+A + + + +I Sbjct: 118 ISEGKKVTVVDEKYFRQAEEQLFGELAFALDVDKTKISEMISE 160 >gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] Length = 1138 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 12/98 (12%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ +I Q+V G ++F++ + D L VP + + R + Sbjct: 480 FKPGDYVVHATHGIALFKQIVRQDVGGKPRDYFLLIYANDD-KLYVPFEQVDRL-TRYIG 537 Query: 74 EAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKIN 108 R R+ WSR RA+ K+ Sbjct: 538 PDASHPRL-------TRLNCADWSRACSRARASAKKLA 568 >gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] Length = 1204 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HGVG E+ ++ V G E+ VI + K L VP + ++ Sbjct: 529 KVGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGD-RLYVPTDQLDEV 580 >gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084] gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084] Length = 1171 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ ++I QEVAG + ++F++ + L VP+ + I R + Sbjct: 507 FKPGDYVVHATHGIALFSDIVRQEVAGRERDYFLLEYAGGD-KLFVPLEQVDRI-TRYVG 564 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 565 PDGSSPRL-------TRLNTADWSR 582 >gi|239625522|ref|ZP_04668553.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519752|gb|EEQ59618.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 171 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 9/163 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIA-FDKDKMCLKVPVGKAIDIGM 69 F G++I+Y GV I +IK + G ++ + + + PV + + Sbjct: 1 MFEKGQYIIYGIRGVCEIMDIKTIDRPGGPKGKLYYELRPYYHQDCKIVTPVDSDKTV-I 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 R L + ++ ++ T +R + Y + + D +++ L+ Sbjct: 60 RPLLTRDEALCLIDRIQDVKEMEVTEDKQREERYKEALKTCDCHVWVSMIKALYLRRQDR 119 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 + + + + +++A + E+A + + ++ I+ Sbjct: 120 TRQGKKMTDLDERYFKTAEENLYSELALSLEMPREKVVDYIKS 162 >gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str. Welgevonden] gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str. Welgevonden] gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str. Welgevonden] gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str. Welgevonden] Length = 1122 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 18/159 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +++ +G+G I +++ +V +F I + + L +PV L Sbjct: 466 NIGDIVIHKDYGIGKIAKLETIKVLDNYHDFLKIEYYNND-KLFLPVENIN------LIT 518 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + + + R+ T W +R K+ + + IA ++L R ++ + Sbjct: 519 RYSNQDSNITL---DRLGSTSWQQR----QTKLKN-HIQKIA---KELIRIEAARQLMQG 567 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 L + E A + + +AI IE +LS Sbjct: 568 TPFLPNNTYKNFCDEFAYTETTDQLQAIQDIENDLSGGK 606 >gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] Length = 1182 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G I+ +E+ G+ ++ I + L VP+ + + + ++ Sbjct: 503 KPGDFVVHVNHGIGKYLGIETKEILGIHKDYLHIQYAAGDS-LFVPIDQIDHVQ-KYVAS 560 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + W R K+ S + IAE DL + + E + Sbjct: 561 EEAQPKIYSL-------GGSEWKR----VKNKVQS-SVKDIAE---DLIKLYAARESAVG 605 >gi|58617486|ref|YP_196685.1| transcription-repair coupling factor [Ehrlichia ruminantium str. Gardel] gi|58417098|emb|CAI28211.1| Transcription-repair coupling factor [Ehrlichia ruminantium str. Gardel] Length = 1123 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 18/159 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +++ +G+G I +++ +V +F I + + L +PV L Sbjct: 467 NIGDIVIHKDYGIGKIAKLETIKVLDNYHDFLKIEYYNND-KLFLPVENIN------LIT 519 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + + + R+ T W +R K+ + + IA ++L + ++ + Sbjct: 520 RYSNQDSNITL---DRLGSTSWQQR----QTKLKN-HIQKIA---KELIKIEAARQLMQG 568 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 L + E A + + +AI IE +LSS Sbjct: 569 TPFLPNNIYKNFCDEFAYTETTDQLQAIQDIENDLSSGK 607 >gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] Length = 1179 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + + + Sbjct: 500 KVGDYVVHVNHGIGKYLGIETLEINGVHKDYLHIRYQGSD-KLYVPVEQIELVQ-KYVGS 557 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL W R K+ S + IA+ DL + ++ E S Sbjct: 558 EAKEPKIYKL-------GGNDWKR----VKKKVQS-SVQDIAD---DLIKLYAEREASKG 602 >gi|253580271|ref|ZP_04857537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848364|gb|EES76328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 171 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 11/163 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMK--LEFFVIA-FDKDKMCLKVPVGKAIDIG 68 + G+ + P G+ I I K ++++ + +K + VPV D Sbjct: 1 MKYEIGDFVSKPVTGICKIENILYLNPQDEKNDKLYYLMKPVEDEKEKIYVPVSN-SDSR 59 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +R +K + R Q Y + + + A+ +++ +++ Q Sbjct: 60 LRLCLTKEEAWNLIKRIPDIPTAWTNNEKMREQNYKEAVRANNPEALVAIIKMIYQR-KQ 118 Query: 129 PEKSYSER------QLYESALNRMVREIAAVNSISEPEAINLI 165 + ++ + ++ A N + E+ + E I Sbjct: 119 KRLAQGKKCTATDARYFQIAENLLYMELGVALEKPKQEICKTI 161 >gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM 17241] gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM 17241] Length = 1157 Score = 54.0 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI----GMRK 71 G+++V+ AHG+G I ++++ G+ ++ I + L VPV + + GMR Sbjct: 493 PGDYVVHTAHGIGVFEGIVKRDIQGVVKDYIKIRYAGTD-TLFVPVTQLDLVSKYIGMRD 551 >gi|85707555|ref|ZP_01038627.1| transcriptional regulator, CarD family protein [Roseovarius sp. 217] gi|85667927|gb|EAQ22816.1| transcriptional regulator, CarD family protein [Roseovarius sp. 217] Length = 51 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 36/51 (70%) Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 R+D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L S+++ Sbjct: 1 RSDDQREQSYSERQLYEAALERLTREVAAVSGGDEVLAARQVDEVLVSRAA 51 >gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122] gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122] Length = 1150 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ AHGV + Q+V G ++ + + ++ L VPV + I R + Sbjct: 485 FKPGDYVVHAAHGVAFFRGLVRQDVGGTMRDYLQLEYAEND-KLFVPVEQLDRI-TRYVG 542 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ + WSR Sbjct: 543 PEGSSPRL-------TRLNTSDWSR 560 >gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a] gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a] Length = 1246 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP Sbjct: 558 MPSRRRKGIDPLALVPGDMVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 616 Query: 61 VGKAIDI 67 + I Sbjct: 617 TDQLEQI 623 >gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] Length = 1180 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 17/121 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG ++ E+ G+ ++ + + + L VPV + + + + Sbjct: 503 VGDLVVHTNHGVGKYLGVETLEINGVHKDYLNLRYAGND-KLYVPVEQIDQVQ-KYVGTE 560 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 + L + W + K+ + + IA+ DL + ++ E S Sbjct: 561 EKDPKIYAL-------GGSDWKK----VKKKVQT-SVEDIAD---DLIKLYAEREASVGH 605 Query: 136 R 136 R Sbjct: 606 R 606 >gi|313681651|ref|YP_004059389.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM 16994] gi|313154511|gb|ADR33189.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM 16994] Length = 995 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +GVG I++ E+ G + VI + D L +PV I R ++ Sbjct: 358 KVGDYVVHEEYGVGIFVGIEQAEILGGVKDLVVIKYMGDD-KLLLPVENLDTID-RYIAS 415 >gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3] gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3] Length = 1208 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP Sbjct: 519 MPSRRRKGIDPLALLPGDMVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 577 Query: 61 VGKAIDI 67 + I Sbjct: 578 TDQLEQI 584 >gi|291520415|emb|CBK75636.1| CarD-like/TRCF domain [Butyrivibrio fibrisolvens 16/4] Length = 177 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 17/168 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIA-FDKDKMCLKVPVGKAIDIG 68 +R G+ +V+ GV I +I + E+ G K ++ +A K + PV + Sbjct: 1 MDYRVGDFLVHEGSGVCKIEDIDDMELMGKGSKKTYYCMAPVFKAGAKVFTPVIG-STVR 59 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG----DLIAIAEVVRDLHR 124 +R ++ L+ + + + K ++A VV+ + Sbjct: 60 LRPVAAEATFNEILENIDDIECINEPN----DRMLQEKFKEVMAEFTPESLARVVKTVLI 115 Query: 125 TDSQPEKSYS-----ERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 Q +S + ++ A ++ E+A A +L E Sbjct: 116 RKWQRLESGKKVMAIDEKILSVAGRKLYEEMAFSMGKDISYAQHLFED 163 >gi|302671192|ref|YP_003831152.1| CarD family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302395665|gb|ADL34570.1| transcriptional regulator CarD family [Butyrivibrio proteoclasticus B316] Length = 172 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 11/172 (6%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIAFDKD-KMCLKVPVGKAIDIGMRK 71 GE ++Y +HG+ + EI G + +++++ D L VPV A D +R+ Sbjct: 3 NIGECVIYGSHGLCQVREILVPSFLERGKEKQYYMMISAVDAGSVLYVPVEGAED-KIRE 61 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ A E ++ + + + I D+ + +V+ L + + E Sbjct: 62 VTGADNAEDLIEDIEEVDEILLPEGKKAEPAMLEIIKRNDVEEMMGLVKSLRKIKATRE- 120 Query: 132 SYSER------QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177 + +R + A + E+A + + LS +T Sbjct: 121 AQGKRFATLNERYLNLAEKLLYTELAYSLETEKETIKRRVLEMLSELPLETA 172 >gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC 23779] gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC 23779] Length = 1207 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + R A Q + G+++V+ HG+ + E +G + EF V+ + L VPV Sbjct: 494 RTESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSRIEASGAEREFLVLRYASGD-KLYVPV 552 Query: 62 GKAIDI 67 + + Sbjct: 553 DQVDRV 558 >gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM 43043] gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM 43043] Length = 1208 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 23/141 (16%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M +++ R G+H+V+ HGVG E+ ++ VAG E+ VI + Sbjct: 506 MPSRRRNQVDPLQLRPGDHVVHEQHGVGRFVEMMQRTVAGATREYLVIEYAAS------- 558 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSR---RAQEYDAKINSGDLI 113 K G R +++ K V G+ M W+R RA+ Y +I Sbjct: 559 --KRGQPGDRLYVPTDQLDQVTKYVGGEEPTLNKMGGSDWTRTKSRAKRYVKQIA----- 611 Query: 114 AIAEVVRDLHRTDSQPEKSYS 134 A+++R + ++S Sbjct: 612 --ADLIRLYSARQATKGHAFS 630 >gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] Length = 1243 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 Q R A Q + G+++V+ HG+G ++ + + G+ ++ VI ++ LK+P + Sbjct: 555 QGARIASYQDLQVGDYVVHATHGIGRYLGVRSETILGVTRDYLVIQYEGSD-RLKIPTEQ 613 Query: 64 AIDI 67 I Sbjct: 614 VDQI 617 >gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM 43833] gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM 43833] Length = 1164 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HGVG E+ ++ V G E+ VI + K L VP + ++ Sbjct: 490 KPGDYVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGD-RLYVPTDQLDEV 541 >gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] Length = 1181 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G I+ E+ G+ ++ I + + L VPV + + Sbjct: 502 KVGDLVVHTNHGIGKYLGIETLEINGVHKDYLHIRYAGND-KLYVPVEQIDQV 553 >gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f] gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f] Length = 1189 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP Sbjct: 502 MPSRRRKGIDPLALTAGDLVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 560 Query: 61 VGKAIDI 67 + + Sbjct: 561 TDQLEQV 567 >gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977] gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977] Length = 986 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+P HG+G ++ +EV G ++ V+ + + L VPV + + R + Sbjct: 332 GDYLVHPEHGIGRFEGLESREVLGAVRDYLVLRYAGEG-QLYVPVEQLPLLR-RHPGTSD 389 Query: 77 FVERALKLVRGKARVKRTMWSR---RAQEYDAKINS 109 R + + + W R RAQ + Sbjct: 390 EPPRL-------SSLGKKDWQRAKARAQADAEALAQ 418 >gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] Length = 1177 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD-TLYVPVDQIDQVQ-KYVGS 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL + W + K+ S + IAE DL + ++ E S Sbjct: 559 EGKEPKIYKL-------GGSEWKK----VKRKVES-SVQDIAE---DLIKLYAEREASKG 603 >gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] Length = 1177 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + +K Sbjct: 501 QVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD-KLYVPVEQIDQV--QKYVG 557 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + E L + G + W R K + IA+ DL + ++ E S Sbjct: 558 SEGKEPKLYKLGG------SDWKR-----VKKKVESSVQDIAD---DLIKLYAEREASKG 603 >gi|167757261|ref|ZP_02429388.1| hypothetical protein CLORAM_02811 [Clostridium ramosum DSM 1402] gi|237735655|ref|ZP_04566136.1| transcriptional regulator [Mollicutes bacterium D7] gi|167703436|gb|EDS18015.1| hypothetical protein CLORAM_02811 [Clostridium ramosum DSM 1402] gi|229381400|gb|EEO31491.1| transcriptional regulator [Coprobacillus sp. D7] Length = 186 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 15/175 (8%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK--LEFFVIAFDKDKMCLKVPVGK 63 R + G+ I+Y V I I + +++ + VP+ Sbjct: 12 NRKLGGYVYEKGDLIIYGNQSVCRIENIGVISIGKQPNSRKYYTLNPIFMDGKTYVPID- 70 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQE----YDAKINSGDLIAIAEVV 119 + MR L +ER L R K + ++ ++ Y I+ + +++ Sbjct: 71 -TQVYMRHLISIEELERLLT--RHPKVQKEIIENQNLRQLTDYYKETISQYTCDGLIQLI 127 Query: 120 RDLHRTDS-----QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 +L S ++ + + A + + +E AAV +I + + IE + Sbjct: 128 CNLQAKQKNLLLQNKRLSQTDERYKKEAEDLLHQEFAAVLNIPKEAVMAYIENKI 182 >gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] Length = 1177 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + +K Sbjct: 501 QVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD-KLYVPVEQIDQV--QKYVG 557 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + E L + G + W R K + IA+ DL + ++ E S Sbjct: 558 SEGKEPKLYKLGG------SDWKR-----VKKKVESSVQDIAD---DLIKLYAEREASKG 603 >gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61] gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52] gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61] gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52] Length = 1177 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD-TLYVPVDQIDQV 552 >gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides DG6] gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides DG6] Length = 1171 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R A +G + G+++V+ HG+ + + V ++ E+ V+ + + VPV + Sbjct: 482 RAAFLRGLKVGDYVVHIEHGIAIYDGLIRRTVGEIEREYLVLRYAAGD-KIYVPVDQIDR 540 Query: 67 I 67 + Sbjct: 541 V 541 >gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3] gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3] Length = 1177 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD-TLYVPVDQIDQV 552 >gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] Length = 1207 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 532 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 583 >gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] Length = 1179 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + + + Sbjct: 502 KIGDYVVHVNHGIGKYLGIETLEINGLHKDYLNIRYSGSD-QLYVPVDQIDLVQ-KYVGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL W R K + IA+ DL + ++ E S Sbjct: 560 EGKEPKIYKL-------GGNDWKR-----VKKKVESSVQDIAD---DLIKLYAEREASKG 604 >gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] Length = 1233 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 + +R Q G+++V+ HG+G T I+ E AG ++ I F D+ + VP Sbjct: 487 LISNAERIKNYQQLEVGDYVVHVNHGIGRYTGIETIEFAGTHQDYLTIVFA-DQAAIHVP 545 Query: 61 VGKAIDI 67 + + + Sbjct: 546 IDQIDLV 552 >gi|73667378|ref|YP_303394.1| transcription-repair coupling factor [Ehrlichia canis str. Jake] gi|72394519|gb|AAZ68796.1| transcription-repair coupling factor [Ehrlichia canis str. Jake] Length = 1128 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 22/160 (13%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +++ +G+G I E++ +V +F I + + L +PV L Sbjct: 471 IGDIVIHKDYGIGKIVELETTKVLDSYHDFIKIEYYNND-KLFLPVENIN------LISK 523 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 + + + ++ T W +R KI + + IA R+L ++ + S Sbjct: 524 YGQQNPNVTL---DKLGSTSWQQR----KTKIKN-HIKKIA---RELLAIEAARKLSTG- 571 Query: 136 RQLY--ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 Q++ + E + + + +AI +E +LSS Sbjct: 572 -QIFCKDENYQHFCNEFSYTETEDQLQAIKDMEHDLSSGK 610 >gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1170 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HGVG ++ EV G+ ++ + + L VPV + + Sbjct: 495 QDLKVGDYVVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTD-QLFVPVDQMDQV 549 >gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec] gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec] Length = 1188 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP Sbjct: 501 MPSRRRKGIDPLALSAGDLVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 559 Query: 61 VGKAIDI 67 + I Sbjct: 560 TDQLEQI 566 >gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] Length = 1067 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 392 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 443 >gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] Length = 1176 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1186 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 511 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 562 >gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar chinensis CT-43] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842] gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264] gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] Length = 1183 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 508 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 559 >gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550] gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1183 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 508 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 559 >gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 1183 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 508 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 559 >gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185] gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Bacillus anthracis str. A2012] gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str. CNEVA-9066] gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western North America USA6153] gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger B] gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum] gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str. Australia 94] gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] Length = 1174 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 +R Q + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + Sbjct: 488 ERIKNYQDLKVGDYVVHVNHGIGQYMGIQTLEIEGIHKDYLYIRYAGND-KLYVPIDQID 546 Query: 66 DI 67 + Sbjct: 547 QV 548 >gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] Length = 1010 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 335 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 386 >gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2] gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2] Length = 968 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 293 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 344 >gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803] gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W] gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI] gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W] gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar anthracis str. CI] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L] gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3] gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1178 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 503 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 554 >gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|68171223|ref|ZP_00544627.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str. Sapulpa] gi|88658189|ref|YP_507071.1| transcription-repair coupling factor [Ehrlichia chaffeensis str. Arkansas] gi|67999343|gb|EAM85988.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str. Sapulpa] gi|88599646|gb|ABD45115.1| transcription-repair coupling factor [Ehrlichia chaffeensis str. Arkansas] Length = 1134 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 18/158 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +++ +G+G I ++ +V +F I + + L +PV L Sbjct: 474 IGDIVIHKDYGIGKIVALETTKVFDSYHDFIKIEYYNND-KLFLPVENIN------LISK 526 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135 + + + ++ T W +R KI + + IA ++L ++ S + Sbjct: 527 YGQQNVNVTL---DKLGSTSWQQR----KTKIKN-HIKKIA---KELLTIEAARRLSTGK 575 Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + E + + + +AI +E +LSS Sbjct: 576 SFFPDENYKHFCNEFSYTETEDQLQAIKDMEHDLSSGK 613 >gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603] gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|160943758|ref|ZP_02090989.1| hypothetical protein FAEPRAM212_01253 [Faecalibacterium prausnitzii M21/2] gi|158444932|gb|EDP21935.1| hypothetical protein FAEPRAM212_01253 [Faecalibacterium prausnitzii M21/2] Length = 167 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 11/165 (6%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIA--FDKDKMCLKVPVGKAIDIGMR 70 F+ G +VY GV + + + E++ + F +P K + +R Sbjct: 4 FQAGALVVYGNLGVHEVEGVGLRRFCDEPAREYYTLRPYFSDSHDRSYIPTEK--EAALR 61 Query: 71 KLSEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128 ++ A L ++ K + + + A+ Y A +++ D + ++L + +Q Sbjct: 62 PVTPAQQAAADLARIKTEKLPIPAGVQTALAEHYQALLHTNDFYQYLTLFKELGQKQTQQ 121 Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 + + + Y+ + E+A S+ EA + L Sbjct: 122 QSRGRKINAMDAYFYQMVERVLREELAVAFGESQQEAGRRLLEIL 166 >gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] Length = 1176 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] Length = 1109 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + + G+++V+ HG+G ++ EV G+ ++F+I + + + VP + Sbjct: 425 RDLKVGDYVVHVNHGIGKYAGVETLEVGGVHRDYFLIRYAGED-KIYVPTDQV 476 >gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH 391-98] Length = 1176 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70] gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70] Length = 1177 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGSD-TLYVPVDQIDQV 552 >gi|307720513|ref|YP_003891653.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM 16294] gi|306978606|gb|ADN08641.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM 16294] Length = 997 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +GVG +I++ E+ G +F VI + D + +PV I R ++ Sbjct: 359 KAGDYVVHEDYGVGIFEKIEQTEILGGIKDFIVIKYVGDD-KILLPVENLDFID-RYIAG 416 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 L + GK + R + + +G ++ A R L + P+ S Sbjct: 417 GGATP-VLDRL-GKGSFGKLKAKVRKRLLEI---AGQIVNTAA-ARALIKA---PKISLG 467 Query: 135 ERQLYE 140 +++L E Sbjct: 468 KKELQE 473 >gi|83952331|ref|ZP_00961063.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] gi|83837337|gb|EAP76634.1| transcriptional regulator, CarD family protein [Roseovarius nubinhibens ISM] Length = 50 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 33/49 (67%) Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 D Q E+SYSERQLYE+AL R+ RE+AAVN E A + L S+++ Sbjct: 2 DDQREQSYSERQLYEAALERLTREVAAVNGNDEVAAAKQVGDVLVSRAA 50 >gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] Length = 1177 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 RVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGSD-TLYVPVDQIDQV 552 >gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] Length = 1189 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + L VPV + + Sbjct: 520 KVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGND-TLYVPVDQMDLV 571 >gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris StLB046] Length = 1170 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 59/132 (44%), Gaps = 17/132 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 ++G+++V+ HG+G I+ V G ++ + + +D L VPV + I R + Sbjct: 498 KSGDYVVHVHHGIGKYIGIETLVVNGTHQDYLHVRYREDD-KLYVPVDQIELIQ-RYVPS 555 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + ++ T W + ++ + D+ ++++ + +++ ++S Sbjct: 556 GEKEPKL-------HKLGGTEWKKTHKKVSNAVQ--DIAD--DLIKLYAKREAEKGYAFS 604 Query: 135 ----ERQLYESA 142 E++ +E+A Sbjct: 605 PDSDEQRGFEAA 616 >gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] Length = 1169 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HGVG IK+ EV G ++ I +DK L VPV + + Sbjct: 504 KLGDYVVHANHGVGVYKGIKQIEVGGHTRDYLDIVYDKGD-KLYVPVDQLDLV 555 >gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] Length = 1173 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 24/163 (14%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+++V+ HGVG ++ EV + ++ + + L VPV + + + Sbjct: 494 QDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 551 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE +L + E Sbjct: 552 VASEDKSPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAE---ELIALYKEREM 596 Query: 132 S----YSERQLYESALNR-MVREIA--AVNSISEPEAINLIEV 167 S + E + A E+ SI E +A ++ Sbjct: 597 SVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQK 639 >gi|167760495|ref|ZP_02432622.1| hypothetical protein CLOSCI_02869 [Clostridium scindens ATCC 35704] gi|167661861|gb|EDS05991.1| hypothetical protein CLOSCI_02869 [Clostridium scindens ATCC 35704] Length = 169 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 57/171 (33%), Gaps = 11/171 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIAFDKD-KMCLKVPVGKAIDIGM 69 F+ G+++ + GV + +I + ++ K E++ + D L +PV + + Sbjct: 1 MFKIGDYVTHYKEGVCEVIDIGKLDMRCSDRKKEYYTLRPLYDAGGTLYMPVANERNQ-I 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R + ++ + + T +R Y + +++ + Sbjct: 60 RGVITYEEARALIEDIPNIEVLWVTDEKKREALYKEAVFKNQCKEWIAIIKTSYLRKMDR 119 Query: 130 EKSYSER------QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 S ++ + A + E+A I + + + + + Sbjct: 120 -LSSGKKSINVDDKYLSIAEQFLYGELAVALEIPREKIRKYVTERMGTLEA 169 >gi|254458302|ref|ZP_05071728.1| transcription-repair coupling factor [Campylobacterales bacterium GD 1] gi|207085138|gb|EDZ62424.1| transcription-repair coupling factor [Campylobacterales bacterium GD 1] Length = 996 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 M + G+++V+ +GVG +I++ E+ G +F VI + D + +PV Sbjct: 350 SSIMLDDLKAGDYVVHEDYGVGIFEKIEQTEILGGIKDFIVIKYVGDD-KILLPVENLDF 408 Query: 67 IGMRKLSE 74 I R ++ Sbjct: 409 ID-RYIAS 415 >gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis HTE831] gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis HTE831] Length = 1173 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 +R Q + G+++V+ HGVG I+ EV+ + ++ +I + D L VP+ Sbjct: 488 VSNAERIKSYQELKIGDYVVHANHGVGKYLGIETLEVSNLHKDYMLIKYSGDD-KLFVPI 546 Query: 62 GKAIDI 67 + + Sbjct: 547 DQIDLV 552 >gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] Length = 1168 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +++V+ HG+G I++ +V G++ ++ VI + + L +P + + Sbjct: 503 NIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKAND-RLMIPTDQMNLV 554 >gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2] gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2] Length = 1177 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + +K Sbjct: 501 QIGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVDQIDQV--QKYVG 557 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + E L + G W R K + IA+ DL + ++ E S Sbjct: 558 SEGKEPKLYKLGGSE------WKR-----VKKKVESSVQDIAD---DLIKLYAEREASKG 603 >gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] Length = 1173 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 24/163 (14%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+++V+ HGVG ++ EV + ++ + + L VPV + + + Sbjct: 494 QDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 551 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE +L + E Sbjct: 552 VASEDKSPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAE---ELIALYKEREM 596 Query: 132 S----YSERQLYESALNR-MVREIA--AVNSISEPEAINLIEV 167 S + E + A E+ SI E +A ++ Sbjct: 597 SVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQK 639 >gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM 15641] gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM 15641] Length = 1155 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ AHG+ ++ QEV G ++ ++ + + L VPV + + R + Sbjct: 486 FNPGDYVVHAAHGIAFFRDVVRQEVGGSLRDYLLLEYAEGD-KLYVPVEQLDRV-TRYVG 543 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ + WSR Sbjct: 544 PEGSSPRL-------TRLNTSDWSR 561 >gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1166 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ EVAG K ++ I +DK L VPV + I Sbjct: 503 KPGDYVVHANHGIGVYKGIKQIEVAGHKRDYLDIVYDKGD-KLYVPVDQLDLI 554 >gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580] gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580] Length = 1177 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + +K Sbjct: 501 QIGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVDQIDQV--QKYVG 557 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + E L + G W R K + IA+ DL + ++ E S Sbjct: 558 SEGKEPKLYKLGGSE------WKR-----VKKKVESSVQDIAD---DLIKLYAEREASKG 603 >gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens TA208] Length = 1177 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3] Length = 1177 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] Length = 1168 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +++V+ HG+G I++ +V G++ ++ VI + + L +P + + Sbjct: 503 NIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKAND-RLMIPTDQMNLV 554 >gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] Length = 1168 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +++V+ HG+G I++ +V G++ ++ VI + + L +P + + Sbjct: 503 NIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKAND-RLMIPTDQMNLV 554 >gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16] gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16] Length = 1177 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD-TLYVPVDQMDQV 552 >gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus thermodenitrificans NG80-2] gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus thermodenitrificans NG80-2] Length = 1177 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD-TLYVPVDQMDQV 552 >gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42] gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42] Length = 1177 Score = 51.7 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415] gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415] Length = 1169 Score = 51.7 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 QKGDYVVHNVHGIGRFLGIETIEIKGVHRDYLTVQYQNGD-TISIPVEQIE 541 >gi|308387853|pdb|3MLQ|E Chain E, Crystal Structure Of The Thermus Thermophilus Transcription-Repair Coupling Factor Rna Polymerase Interacting Domain With The Thermus Aquaticus Rna Polymerase Beta1 Domain gi|308387854|pdb|3MLQ|F Chain F, Crystal Structure Of The Thermus Thermophilus Transcription-Repair Coupling Factor Rna Polymerase Interacting Domain With The Thermus Aquaticus Rna Polymerase Beta1 Domain gi|308387855|pdb|3MLQ|G Chain G, Crystal Structure Of The Thermus Thermophilus Transcription-Repair Coupling Factor Rna Polymerase Interacting Domain With The Thermus Aquaticus Rna Polymerase Beta1 Domain gi|308387856|pdb|3MLQ|H Chain H, Crystal Structure Of The Thermus Thermophilus Transcription-Repair Coupling Factor Rna Polymerase Interacting Domain With The Thermus Aquaticus Rna Polymerase Beta1 Domain Length = 71 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+++++P HGVG ++ +EV G+K ++ V+ + K + L +PV + Sbjct: 5 PGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRY-KGEGKLYLPVEQ 51 >gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] Length = 1177 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QVGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM 43183] gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM 43183] Length = 1168 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M +++ R G+++V+ HGVG E+ + V G E+ V+ + + L VP Sbjct: 480 MPSRRRGGIDPLQLRPGDYVVHEQHGVGRYVEMVSRTVQGATREYLVLEYARGD-RLFVP 538 Query: 61 VGKAIDI 67 + +I Sbjct: 539 TDQLEEI 545 >gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1] gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1] Length = 1161 Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+++V+ AHGV E+ ++V G ++ ++ + + L VPV + + R + Sbjct: 494 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGD-KLYVPVEQLDRV-TRYVG 551 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 552 PEGASPRL-------TRLNTADWSR 569 >gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4] gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus OF4] Length = 1180 Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G ++ E+ G+ ++ + + D L VPV + + + + Sbjct: 503 KVGDLVVHTNHGIGKYLGVETLEINGLHKDYLHLRYAGDD-KLYVPVEQIDQVQ-KYVGS 560 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L W + K + IA+ DL + ++ E S Sbjct: 561 EEKDPKIYAL-------GGNDWKK-----VKKRVQSSVEDIAD---DLIKLYAEREASKG 605 >gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243] gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243] Length = 1161 Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+++V+ AHGV E+ ++V G ++ ++ + + L VPV + + R + Sbjct: 494 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGD-KLYVPVEQLDRV-TRYVG 551 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 552 PEGASPRL-------TRLNTADWSR 569 >gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] Length = 1168 Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + +V+ HG+G I++ +V G++ ++ VI + + L +P + + Sbjct: 503 NIDDFVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKAND-RLMIPTDQMNLV 554 >gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] Length = 1150 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F+ G+++V+ HG+ EI +E AG ++F++ + L VP + + R + Sbjct: 487 FKPGDYVVHAKHGIAYFKEIVREEAAGRMRDYFLLEYAHGD-KLYVPFEQVDRL-TRYVG 544 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 545 PDGAAPRL-------TRLSTADWSR 562 >gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus DSM 12680] gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus DSM 12680] Length = 1081 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 R G+++V+ HG+G I + EV G E+ VI + L +PV K Sbjct: 425 RVGDYVVHENHGIGLFQGITKMEVEGFAKEYLVIQYAGSD-RLYLPVDKLE 474 >gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1] gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1] Length = 1177 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+H+V+ HG+G I+ E+ G+ ++ I + + L VPV + + + ++ Sbjct: 501 KIGDHVVHVNHGIGKYLGIETLEINGVHKDYLHIKYQGND-KLYVPVEQFDLVQ-KYVAS 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL T W + K+ S + IA+ DL + ++ E S Sbjct: 559 ESKDPKLYKL-------GGTEWKK----VKNKVES-SVQDIAD---DLIKLYAEREASKG 603 >gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] Length = 1172 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HGVG ++ EV + ++ I + L VPV + + Sbjct: 495 QDLKIGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKIQYKGTD-QLFVPVDQMDQV 549 >gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM 9485] gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM 9485] Length = 1182 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T R A + + G+++V+ HG+ + + V ++ E+ V+ + + + VPV Sbjct: 478 TTVADRTAFLRSLKPGDYVVHIEHGIAVFDGMIRRTVGEVEREYLVLRYAGED-KIYVPV 536 Query: 62 GKAIDI 67 + + Sbjct: 537 DQIDRV 542 >gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] Length = 1195 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + +D + +PV + + Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQY-QDAATISLPVEQIESL 542 >gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5] gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5] Length = 1177 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA] gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA] Length = 1022 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 ++ G+++V+ AHGV E+ ++V G ++ ++ + + L VPV + + R + Sbjct: 355 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGD-KLYVPVEQLDRV-TRYVG 412 Query: 74 EAHFVERALKLVRGKARVKRTMWSR 98 R R+ WSR Sbjct: 413 PEGASPRL-------TRLNTADWSR 430 >gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. JH642] gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. SMY] gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis] gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] Length = 1177 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 1177 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto BEST195] Length = 1177 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + L VPV + + Sbjct: 501 QIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD-KLYVPVEQIDQV 552 >gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius SK126] gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius SK126] Length = 1168 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + +D + +PV + + Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQY-QDSATISLPVEQIESL 542 >gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] Length = 1169 Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G ++ I + D L VPV + I Sbjct: 498 KPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADD-KLYVPVEQIDLI 549 >gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905] gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905] Length = 1169 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G ++ I + D L VPV + I Sbjct: 498 KPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADD-KLYVPVEQIDLI 549 >gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204] gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204] Length = 1130 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 14/115 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +GVG I+ +E+ +K +F I + L VP+ + + RK Sbjct: 460 QPGDYVVHAQYGVGQYICIENREIQKVKRDFLKI-IYRGNTELLVPLEQFHLV--RKFVS 516 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 V L + K +R Q IAE + L+ Q Sbjct: 517 REGVVPKLNKLGSGDWEKT---KKRLQSNVE--------DIAERLLSLYANREQH 560 >gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis F0396] gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis F0396] Length = 1066 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + +D + +PV + + Sbjct: 364 GDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQY-QDAATISLPVEQIESL 413 >gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola ACS-139-V-Col8] gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola ACS-139-V-Col8] Length = 1181 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HGVG T ++ E+ G+ + I + ++ + +PV K I Sbjct: 502 SVGDYVVHLNHGVGRYTGMETLEMNGVHRDMLAIEY-QNNARVLIPVDKIHLI 553 >gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13] gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13] Length = 1178 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G I+ ++ G+ ++ I + L VPV + + + + Sbjct: 501 NVGDYVVHINHGIGKYLGIETLDINGLHKDYIHIKYQGSD-KLYVPVEQIDQVQ-KYVGS 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL T W + K+ S + IA+ DL + ++ E S Sbjct: 559 EGKEPKVYKL-------GGTDWKK----VKNKVES-SVQDIAD---DLIKLYAEREASVG 603 >gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] Length = 1185 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G I+ EVAG+ ++ I + + L VPV + + Sbjct: 501 QVGDWVVHINHGIGKYLGIETLEVAGIHKDYMHITYAGND-KLYVPVDQIDQV 552 >gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115] gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti VCD115] Length = 1041 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 12/96 (12%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G G+ +++P HG+G ++ ++V G+ ++ I + + L VP+ + +R+ Sbjct: 366 GLHVGDFLIHPEHGIGRFEGLETRKVLGVTRDYLNIEY-RGGARLSVPIEQLPV--LRRH 422 Query: 73 SEAHFVERALKLVRGKARVKRTMWSR---RAQEYDA 105 L + W++ RA++ Sbjct: 423 PGTTDDPPVLSSF------DKKDWAKAKERARKNAE 452 >gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150] gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150] Length = 1168 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + +D + +PV + + Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQY-QDAATISLPVEQIESL 542 >gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae NEM316] gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316] gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1165 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG I+ E+ G+ ++ I + + +PV + Sbjct: 489 SVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 538 >gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC 13813] Length = 1165 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG I+ E+ G+ ++ I + + +PV + Sbjct: 489 SVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 538 >gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1165 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG I+ E+ G+ ++ I + + +PV + Sbjct: 489 SVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 538 >gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1165 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG I+ E+ G+ ++ I + + +PV + Sbjct: 489 SVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 538 >gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27] gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27] Length = 978 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 16/118 (13%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+++++P HGVG ++ +EV G+K ++ V+ + K + L +PV + + R Sbjct: 318 ALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRY-KGEGKLYLPVEQLPLLK-RHP 375 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + + W +RA+E K D+ +A R L + Sbjct: 376 GTTDDPPEL-------SSLGKNEW-QRAKEKARK----DVEELAG--RLLVLQAKRKA 419 >gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1] gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1] Length = 1179 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G I E+ G+ ++ I + L VPV + + +K Sbjct: 499 NVGDYVVHVNHGIGKYLGIVTLEINGVHKDYLHIKYQGSD-KLYVPVDQIDLV--QKYVG 555 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + E L + G W R K+ S + IA+ DL + ++ E S Sbjct: 556 SEGKEPKLYKLGGSE------WKR----VKRKVQS-SIQDIAD---DLVKLYAEREASKG 601 >gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8] gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8] Length = 978 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 16/118 (13%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+++++P HGVG ++ +EV G+K ++ V+ + K + L +PV + + R Sbjct: 318 ALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRY-KGEGKLYLPVEQLPLLK-RHP 375 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + + W +RA+E K D+ +A R L + Sbjct: 376 GTTDDPPEL-------SSLGKNEW-QRAKERARK----DVEELAG--RLLVLQAKRKA 419 >gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] Length = 1187 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ RTG+++V+ HG+G E+ ++ VAG E+ V+ + K Sbjct: 484 MPSRRRNAVDPLALRTGDYVVHEQHGIGRYVEMVQRTVAGATREYLVLEYASSKRGQPGD 543 Query: 56 CLKVPVGKAIDI 67 L VP + ++ Sbjct: 544 RLFVPTDQLDEV 555 >gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis DSM 14884] Length = 985 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+++++P HG+G I+ +EV G+K ++ V+ + D L +P+ + Sbjct: 327 ALSEGDYLIHPEHGIGRFLGIETREVLGVKRDYLVLQYAGDG-RLYLPIEQ 376 >gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119] gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119] Length = 1169 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HGVG ++ EV + ++ + + L VPV + + Sbjct: 494 QDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] Length = 1198 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M ++K+ + G+++V+ HGVG E+K++EV G E+ V+ + K Sbjct: 508 MPARRKKQIDPLELKPGDYVVHEQHGVGQFIEMKQREVQGATREYLVLEYGASKRGAPPD 567 Query: 56 CLKVPVGKAIDI 67 L VP + Sbjct: 568 RLYVPADALDQV 579 >gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] Length = 1169 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HGVG ++ EV + ++ + + L VPV + + Sbjct: 494 QDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] Length = 1169 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HGVG ++ EV + ++ + + L VPV + + Sbjct: 494 QDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus 11B] gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus 11B] Length = 1192 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 17/105 (16%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + ++++ R G+ +V+ HGVG + +E+ G E+ VI + + Sbjct: 501 LPSRRRKSIDPLELRPGDFVVHEQHGVGRFVGMATREIGGATREYLVIEYAPSRRGQPGD 560 Query: 56 CLKVPVGKAIDIGMRKLSEAH-FVERALKLVRGKARVKRTMWSRR 99 L VP + R + ++R W+RR Sbjct: 561 RLWVPTDSLDQV-TRYVGGEAPTLDRI----------GGADWARR 594 >gi|160931462|ref|ZP_02078858.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753] gi|156869527|gb|EDO62899.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753] Length = 1149 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G++IV+ AHGVG I + E+ G+ ++ + + K + L VPV + + + + Sbjct: 493 PGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDI-LYVPVTQLDMVS-KYIGPK 550 Query: 76 HFVERALKLVRGKA 89 V+ L + G+ Sbjct: 551 EEVKVRLNRLGGQD 564 >gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] Length = 1177 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 KR G+++V+ HG+G I+ EV G K ++F I + L VP + Sbjct: 497 KRITSIDELSAGDYVVHITHGIGRYLGIETLEVEGHKKDYFAIQYAGGD-KLYVPTDQVE 555 >gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] Length = 1185 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV G+ ++ +I + ++ + VPV + + Sbjct: 507 KPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINY-RNNAQIFVPVTQLNLV 558 >gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL2A] gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str. NATL2A] Length = 1167 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + +K D + + G+++V+ HG+G +I++ + G ++ VI + K+ + Sbjct: 488 SQSKKIDPNKM--KPGDYVVHRNHGIGLFQKIEKLNINGESRDYLVIKYMDGKLSV 541 >gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] Length = 1178 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV G+ ++ +I + ++ + VPV + + Sbjct: 500 KPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINY-RNNAQIFVPVTQLNLV 551 >gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] Length = 1183 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + +++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 508 KVDDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 559 >gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] Length = 1176 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + +++V+ HG+G I+ E+ G+ ++ I + + L VP+ + + Sbjct: 501 KVDDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND-KLYVPIEQIDQV 552 >gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1140 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 ++++ M + F + G+++V+ HGVG +I+ + G + +F + + L Sbjct: 463 RYKKQSSQMIESFIDLKEGDYVVHVNHGVGRFVKIERTKADGKERDFLKLEYAGGDS-LF 521 Query: 59 VPVGKAIDI 67 VP+ + + Sbjct: 522 VPLDQISLV 530 >gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus J-10-fl] gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl] gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus J-10-fl] gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl] Length = 1185 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R A + + G+++V+ HG+ + + V+ ++ E+ V+ + + + VPV + Sbjct: 484 RAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLRYAGED-KIYVPVDQIDR 542 Query: 67 I 67 + Sbjct: 543 V 543 >gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A] gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A] Length = 1167 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + +K D + + G+++V+ HG+G +I++ + G ++ VI + K+ + Sbjct: 488 SQSKKIDPNKM--KPGDYVVHRNHGIGLFQKIEKLNINGESRDYLVIKYMDGKLSV 541 >gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JKD6159] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium leprae Br4923] gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium leprae Br4923] Length = 1224 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ A G+ +V+ HG+G E+ E+ V G + E+ V+ + +K Sbjct: 512 LAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASNKKSKQAD 571 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 572 KLYVPMDSLDQL 583 >gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] Length = 1177 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G++IV+ HG+G I+ E G+ ++ I + D L VPV K I Sbjct: 501 KPGDYIVHIHHGIGRFVGIETLESGGVHKDYLHIVYKADD-KLFVPVDKIDLI 552 >gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN] gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium leprae] Length = 1224 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ A G+ +V+ HG+G E+ E+ V G + E+ V+ + +K Sbjct: 512 LAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASNKKSKQAD 571 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 572 KLYVPMDSLDQL 583 >gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] Length = 1167 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E++G+ ++ I + + +PV + + + ++ Sbjct: 491 GDYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGD-RISIPVDQIQMLS-KYVASDG 548 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + KL G R Q+ K+ + + IA+ DL + Y+ER Sbjct: 549 KAPKINKLNDG-----------RFQKTKQKVQT-QVEDIAD---DLIKL-------YAER 586 Query: 137 QLYE 140 E Sbjct: 587 SQLE 590 >gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ST398] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] Length = 1176 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ E+ G ++ I ++ L VPV + + Sbjct: 501 NVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD-KLYVPVEQIDQV 552 >gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635] gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21193] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11] gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] Length = 1176 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ E+ G ++ I ++ L VPV + + Sbjct: 501 NVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD-KLYVPVEQIDQV 552 >gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 132] gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus CGS01] gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA131] gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA177] gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21189] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122] gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED133] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] Length = 1209 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+H+V+ HGVG E+ ++ V G E+ V+ + K L VP + + Sbjct: 517 KPGDHVVHEQHGVGRFVEMMQRTVGGATREYLVLEYAASKRGQPGDRLFVPTDQLDQV 574 >gi|229815552|ref|ZP_04445879.1| hypothetical protein COLINT_02602 [Collinsella intestinalis DSM 13280] gi|229808782|gb|EEP44557.1| hypothetical protein COLINT_02602 [Collinsella intestinalis DSM 13280] Length = 169 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 26/176 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC--LKVPVGKAIDIGMR 70 F G+H+++P GV T+T E + ++ L P+ A + Sbjct: 1 MFEIGQHVIHPGQGVCTVTGFTE----DVAHPMILLRAKSGHAETHLMYPL--AQQSRLH 54 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDA-------KINSGDLIAIAEVVRDLH 123 + E + T R + K+ + + + +A+ VR H Sbjct: 55 AIISREDAEDLIDSYADLTVDSFT---ERNSALEETHFKQQLKLGAPETVRVAKTVR--H 109 Query: 124 RTDS-----QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 R + SY R + + A R + E + E + + Sbjct: 110 RIAEAEAHGKKPSSYYSR-MLKEARRRTLEEFSVALGADEDAVEERFKAAIIQAGE 164 >gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763] gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TW20] gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp. aureus T0131] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981] gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus CGS03] gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21172] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117] gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117] Length = 1168 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MR1] gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus LMD-9] gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus thermophilus LMD-9] gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase) [Streptococcus thermophilus ND03] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 34/167 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E+ G+ ++ I + +D + +P+ + + K Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQY-QDAATISLPIEQIES--LSKYVSVD 549 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 E + + R Q+ K+ S + IA+ +L + Y+ER Sbjct: 550 GKEPKINKLNDG----------RFQKTKQKV-SKQVEDIAD---NLLKL-------YAER 588 Query: 137 QLY---------ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ++ + E + V ++ + +I I+ ++ S Sbjct: 589 SQLKGFAFSPDDDNQRDF-EDEFSYVETVDQLRSIKEIKADMESDKP 634 >gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300] gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603] gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 494 QDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 551 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ R ++ T W + AK+ + IA+ + DL+ Q E Sbjct: 552 VASEDKSPRL-------NKLGGTEWKK----TKAKVQQ-SVEDIADELIDLY---KQREM 596 Query: 132 SYS 134 S Sbjct: 597 SVG 599 >gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU045] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU144] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 20/157 (12%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 Y E ++A E+ ++ +A ++ E+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKSIDEI 630 >gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 20/157 (12%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 Y E ++A E+ ++ +A ++ E+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKSIDEI 630 >gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU028] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis FRI909] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 491 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 545 >gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] Length = 1166 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ +V G K ++ I +DK L VPV + I Sbjct: 503 KPGDYVVHANHGIGVYKGIKQIDVGGHKRDYLDIVYDKGD-KLYVPVDQLDLI 554 >gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] Length = 1167 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ I + + +PV + + Sbjct: 492 QKGDYVVHQIHGIGQYLGIETIEIKGIHRDYVTIQYQNGD-RISIPVEQIQTL 543 >gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU121] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HGVG ++ EV ++ + + L VPV + + + Sbjct: 494 QDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 551 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ R ++ T W + AK+ + IA+ + DL+ Q E Sbjct: 552 VASEDKSPRL-------NKLGGTEWKK----TKAKVQQ-SVEDIADELIDLY---KQREM 596 Query: 132 SYS 134 S Sbjct: 597 SVG 599 >gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM 13941] gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM 13941] Length = 1246 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + R A +G + G+++V+ HG+ + + V G+ ++ + + + L VPV Sbjct: 527 RSVEDRAAFLRGLKPGDYVVHIEHGIAVYEGLVRRSVGGVARDYLNLRYAEGD-RLYVPV 585 Query: 62 GKAIDI 67 + + Sbjct: 586 DQIDRV 591 >gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87] gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH60] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV + ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|283796045|ref|ZP_06345198.1| transcriptional regulator, CarD family [Clostridium sp. M62/1] gi|291076255|gb|EFE13619.1| transcriptional regulator, CarD family [Clostridium sp. M62/1] gi|295092338|emb|CBK78445.1| CarD-like/TRCF domain. [Clostridium cf. saccharolyticum K10] Length = 169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 65/170 (38%), Gaps = 9/170 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 F+ GE+I+Y + G + + +L + +I + PV + M Sbjct: 1 MFQEGEYIIYGSSGACKVERVGILPYGSGKEERLCYTLIPCRDPGSTIFTPVDN-QKVLM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----R 124 R + + +R + + +R +EY + + D + +++ ++ R Sbjct: 60 RPVMTREEAMDLIGQMREISPLWIQNERKREEEYREAVRTCDGRELVRIIKTIYLRRRKR 119 Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + + ++ + ++ A + + E+A + + + IE + + + Sbjct: 120 MSEGKKITAADSRYFKLAEDNLYGELAVSLDLERDKVKDFIEEKIGAGEA 169 >gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV + ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14] gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14] Length = 1169 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G++IV+ HGVG ++ EV ++ + + L VPV + + Sbjct: 494 QDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTD-QLFVPVDQMDQV 548 >gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] Length = 1168 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 21/158 (13%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G++IV+ HGVG ++ EV + ++ + + L VPV + + + Sbjct: 493 QDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKLQYKGTD-QLFVPVDQMDQVQ-KY 550 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 ++ + ++ + W + AK+ + IAE + DL++ E Sbjct: 551 VASEDKTPKL-------NKLGGSEWKK----TKAKVQQ-SVEDIAEELIDLYKEREMAEG 598 Query: 132 -SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 Y E ++A E+ ++ +A + I+ Sbjct: 599 YQYGE----DTAEQT-TFELDFPYELTPDQAKS-IDEI 630 >gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila UNI-1] gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila UNI-1] Length = 1129 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +A F+ G++IV+ +G+G + + V G++ E+ I ++ + VPV +A + Sbjct: 450 EAEYTDFKVGDYIVHVDYGIGRFAGLSRRTVDGVEREYLAIEYEGGD-TIFVPVYQADRL 508 >gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] Length = 1118 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 +++R A + G+++V+ HGVG ++ +V G+K ++ I + D L VP Sbjct: 415 ASKEERIAHFREINVGDYVVHVNHGVGKYLGVETLDVGGIKKDYLHIKYGGDD-KLFVPT 473 Query: 62 GKA 64 + Sbjct: 474 DQV 476 >gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614] gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614] Length = 1224 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M ++KR G+++V+ HGVG E+K++EV G E+ V+ + K Sbjct: 526 MPARRKRQIDPLELSAGDYVVHEQHGVGRFVEMKQREVGGAVREYLVLEYGASKRGGPPD 585 Query: 56 CLKVPVGKAIDI 67 L VP + Sbjct: 586 RLYVPADALDQV 597 >gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC 6026] Length = 1165 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHND-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ + W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGRVPHI-------NKLGSSEWTK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|76797973|ref|ZP_00780232.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] gi|76586653|gb|EAO63152.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] Length = 727 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG I+ E+ G+ ++ I + + +PV + Sbjct: 51 SVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 100 >gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT] gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT] Length = 1170 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ EV G K ++ ++++ L VPV + + Sbjct: 502 KPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYLELSYNAGD-TLYVPVEQLDLV 553 >gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus LMG 18311] gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus LMG 18311] Length = 1168 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 34/167 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E+ G+ ++ I + +D + +P+ + + K Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIRGVHRDYLTIQY-QDAATISLPIEQIES--LSKYVSVD 549 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 E + + R Q+ K+ S + IA+ +L + Y+ER Sbjct: 550 GKEPKINKLNDG----------RFQKTKQKV-SKQVEDIAD---NLLKL-------YAER 588 Query: 137 QLY---------ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 ++ + E + ++ + +I I+ ++ S Sbjct: 589 SQLKGFAFSPDDDNQRDF-EDEFSYAETVDQLRSIKEIKADMESDKP 634 >gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae ACS-120-V-Col10a] gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae ACS-120-V-Col10a] Length = 1183 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HG+G ++ EVAG ++ I D + VP+ + + Sbjct: 500 QELKPGDYVVHVNHGIGQFVGVETIEVAGNHKDYLSI-VYADNASIHVPIDQIDLV 554 >gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] Length = 1173 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ E+ G K ++ + ++ D L VPV + + Sbjct: 505 KPGDYVVHANHGIGVYKGIKQLELQGHKKDYLELIYESDD-KLYVPVEQLDMV 556 >gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1] gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1] Length = 1176 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G + +F +IA+ D L VP+ K + Sbjct: 496 KIGDYVVHVQHGIGQYIGIETLESNGARKDFLMIAYRGDD-KLYVPIDKIQMV 547 >gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909] gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909] Length = 1176 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G + +F +IA+ D L VP+ K + Sbjct: 496 KIGDYVVHVQHGIGQYIGIETLESNGARKDFLMIAYRGDD-KLYVPIDKIQMV 547 >gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49] Length = 1167 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIKYQNSD-RISIPVDQID 542 >gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 1160 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 F G+++V+P HG+G IK EV G ++ VIA+ + L VP + ++ Sbjct: 497 FSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGED-RLYVPPEQVGNL 549 >gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus CNRZ1066] gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus CNRZ1066] Length = 1168 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + +D + +P+ + + Sbjct: 493 GDYVVHQTHGIGQFKGIETIEIRGVHRDYLTIQY-QDAATISLPIEQIESL 542 >gi|325473854|gb|EGC77042.1| hypothetical protein HMPREF9353_01390 [Treponema denticola F0402] Length = 721 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 14/113 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G I+ ++ + ++ + + + +P+ +A + R + Sbjct: 493 NPGDYVVHVNYGIGKFRGIERVKILDTERDYINL-LYANDETVFIPIEQADLVQ-RYIGN 550 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L ++ K+ W R K+ + IA + DL+ Sbjct: 551 EGEAPH-LDILGSKS------WENR----KNKVKK-SVEDIAAKLIDLYSKRK 591 >gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] Length = 1170 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + I+ EV G+ ++ VI + ++ + VPV + + Sbjct: 498 KPGDYVVHVNHGIGIFSGIRTMEVDGVHQDYMVINY-RNNAQIFVPVTQLNLV 549 >gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum Ice1] gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum Ice1] Length = 1247 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +++ EV G+ ++ VI + + L VP + I Sbjct: 515 GDYVVHVNHGIGRYMGVEKLEVGGVHKDYLVIRYAGED-RLYVPTDQVHLI 564 >gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33] gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84] gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7] gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407] gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 05ZYH33] gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis SC84] gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis BM407] gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis P1/7] gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1] Length = 1164 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ + + + +PV + Sbjct: 491 VGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSD-RISIPVEQID 539 >gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] Length = 1169 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 2 TFQQKRDAMRQGF----RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + Q+++ F G+++V+ HG+G + + +AG++ E+ +I + L Sbjct: 487 SQQRRKPVTPASFLAEVNPGDYVVHQEHGIGRFEGLTKMNLAGVEREYLLIHYAGTD-KL 545 Query: 58 KVPVGKAIDI 67 +P + + Sbjct: 546 YIPTDQLDRV 555 >gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1158 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPADQLSLV 537 >gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] Length = 1219 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ E+ G+ ++ I + L VP + + Sbjct: 516 KPGDYVVHVHHGIGRFLGLRTMEIQGVHRDYLTIQYAGGD-RLYVPTDQIELV 567 >gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum BKT015925] gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum BKT015925] Length = 1169 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ EV G K ++ +++ L VPV + + Sbjct: 502 KPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYLELSYTAGD-TLYVPVEQLDLV 553 >gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14] Length = 1164 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ + + + +PV + Sbjct: 491 VGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSD-RISIPVEQID 539 >gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437] Length = 1181 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HG+G + +V G+ ++ +I + + L VP+ + + Sbjct: 498 QELQPGDYVVHVNHGIGRYAGTETLDVGGIHKDYLLIQYAGND-KLYVPIEQIDQV 552 >gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1163 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G I + EV K ++FVI + + + VPV + + Sbjct: 498 EIGDYVVHENNGIGIYKGISQIEVNNTKKDYFVIEYQGND-KVFVPVDQMDLV 549 >gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1163 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPADQLSLV 537 >gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1158 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPADQLSLV 537 >gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1158 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPADQLSLV 537 >gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4] gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4] Length = 1123 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 23/122 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM-- 69 + F+ GE++V+P HG+G + + V G+ E+ +I + + L +P A +G+ Sbjct: 458 REFKPGEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGED-RLYLP---ADQLGVLE 513 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSR-RAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R + + L + G W R RA+ A +V R+L R + Sbjct: 514 RYV-GGEGAKPRLSRLGGGE------WKRVRARVKQA---------ATDVARELLRLYAM 557 Query: 129 PE 130 E Sbjct: 558 RE 559 >gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1158 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPADQLSLV 537 >gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896] Length = 1124 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ +GVG EI+++E G+K ++ IA+ L VP+ + + Sbjct: 486 KKGDYVVHETYGVGQFIEIEQREFDGIKKDYIKIAYFGGDS-LYVPLEQMDKV 537 >gi|325830786|ref|ZP_08164170.1| CarD-like protein [Eggerthella sp. HGA1] gi|325487193|gb|EGC89636.1| CarD-like protein [Eggerthella sp. HGA1] Length = 179 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 72/173 (41%), Gaps = 26/173 (15%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 + G+ +VY H V + ++E G ++ + ++ + L V V +A +R Sbjct: 1 MYACGDTVVYRHH-VCEVAALRENYFEG--KDYLELRALFENSLKLFVAVDEATPDNLRP 57 Query: 72 L-------------SEAHFVERALKLVRGKARVKRTMWSRRAQE-YDAKINS---GDLIA 114 + +A ++ ++ A + RR +E YD ++ + DLI Sbjct: 58 VMSKRKALALIDSIVDADTIDE--NALKPDAPTPTLL-ERRMKEEYDKRLRTFAPEDLIP 114 Query: 115 IAEVV--RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 I + V R + R DS + ++++ ++ A + E+A ++ +++ Sbjct: 115 IMKSVHERSVRRVDSGRRITATDKKYFDLAEGLLCDELAVSLAVPRENVKDVL 167 >gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] Length = 1175 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I E+ G+ ++ I + L VPV + I Sbjct: 489 KVGDYVVHQNHGIGKYVGIGTLEIGGIHKDYLHILYAGGD-KLSVPVEQVDMI 540 >gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] Length = 1169 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ EV G K ++ +++ L VPV + + Sbjct: 502 KPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYLELSYTAGD-TLYVPVEQLDLV 553 >gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis SK355] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis SK1056] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis SK115] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis SK353] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] Length = 1164 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 24/124 (19%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E++G+ ++ I + + +PV + + + ++ Sbjct: 491 GDYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGD-RISIPVDQIQMLS-KYVASDG 548 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + KL G R Q K+ + + IA+ DL + Y+ER Sbjct: 549 KTPKINKLNDG-----------RFQRTKQKVQT-QVEDIAD---DLIKL-------YAER 586 Query: 137 QLYE 140 E Sbjct: 587 SQLE 590 >gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36] gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus sanguinis SK36] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis SK1059] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis SK1087] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis SK408] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis SK330] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis SK150] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis SK405] gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis SK678] gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis SK160] gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1] gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis SK1058] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1] gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1] Length = 1265 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +G + G+++V+ HG+ + + V G++ ++ + + + L VPV + + Sbjct: 542 RGLKPGDYVVHIEHGIAVYEGLIRRSVGGIERDYLNLRYAEGD-RLYVPVDQIDRV 596 >gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT 12067] gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT 12067] Length = 1090 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 16/99 (16%) Query: 5 QKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + + Q F + G+++V+ HG+G ++ EV G+ ++ ++A+ D L VPV Sbjct: 413 KNQGQQLQYFSDIKAGDYVVHKVHGIGRYIGVENVEVDGIHRDYLLLAYAGDD-KLYVPV 471 Query: 62 GKAIDIGMRK--LSEAHFVERALKLVRGKARVKRTMWSR 98 +GM + V R +++ W R Sbjct: 472 ---EQVGMLHKYVGSEGSVPRL-------SKMGGNDWKR 500 >gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72] Length = 1167 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYLTIQYQNSD-RISIPVDQID 542 >gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC 824] gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum ATCC 824] gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum EA 2018] Length = 1171 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G++IV+ HG+G IK+ EV G K ++ +++ D L VPV + + Sbjct: 503 KPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELSYAVDD-KLYVPVEQLDLV 554 >gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] Length = 1179 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 15/117 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G ++ EVAG ++ I +D L +PV + I + +S Sbjct: 499 KPGDFVVHVNHGIGRFMGMETLEVAGRHQDYMTI-IYRDDAKLFIPVSQLDRIQ-KYVSS 556 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPE 130 V + ++ + W + ++ +K+ IA+ + +L+ R +S+ Sbjct: 557 EGKVPKV-------NKLGSSEWEKTKRKVASKL-----EDIADELVELYSRRESEKG 601 >gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus DSM 13965] gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus DSM 13965] Length = 1196 Score = 48.6 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ E+ G+ ++ + + L VP + + Sbjct: 516 KPGDYVVHVHHGIGRFLGLRTMEIQGVHRDYLTLQYAGGD-RLYVPTDQIELV 567 >gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus rhamnosus HN001] gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus rhamnosus HN001] Length = 1175 Score = 48.6 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|75675705|ref|YP_318126.1| transcription-repair coupling factor [Nitrobacter winogradskyi Nb-255] gi|74420575|gb|ABA04774.1| transcription-repair coupling factor [Nitrobacter winogradskyi Nb-255] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 18/115 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ EV G + + + ++ L +PV + R S+ Sbjct: 505 GDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYA-NETKLFLPVENIELLS-RYGSDQA 562 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE L + G W R AK+ S I E+ +L R ++ Sbjct: 563 NVE--LDRLGGGG------WQAR----KAKLKS----RIREIAGELIRIAAERHL 601 >gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1150 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I Sbjct: 486 QELKVGDYVVHVNHGIGKYVGIGTLEINGIHKDYLHILYAGGD-KLSVPIDQIDLI 540 >gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705] gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705] Length = 1175 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei BL23] gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei BL23] gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23] gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W] gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX] gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX] Length = 1210 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 21/135 (15%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 ++R + G+++V+ HG+G E+ + + G E+ VI + K Sbjct: 520 SRRRGVDPLQLKPGDYVVHEQHGIGRYVEMVSRTIQGATREYLVIEYAPS---------K 570 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSRRAQEYDAKINSGDLIAIAEVV 119 G R ++ + V G + M W AK S A+ E+ Sbjct: 571 RGQPGDRLFVPTDQLDEVTRYVGGDSPTLSKMGGSDW--------AKAKSRARKAVREIA 622 Query: 120 RDLHRTDSQPEKSYS 134 DL R S S Sbjct: 623 GDLIRLYSARHASPG 637 >gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1] gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1] Length = 1178 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 KR G+++V+ HG+G I+ EV G ++F + + L VP + Sbjct: 498 KRITDFNELDVGDYVVHITHGIGKYLGIESLEVGGHIKDYFTLMYAGGD-KLYVPTNQVD 556 Query: 66 DI 67 I Sbjct: 557 LI 558 >gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase) [Lactobacillus casei str. Zhang] gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus casei str. Zhang] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG] gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG] gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG] Length = 1175 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1] gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1] Length = 1182 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 503 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 554 >gi|257791039|ref|YP_003181645.1| hypothetical protein Elen_1287 [Eggerthella lenta DSM 2243] gi|317488244|ref|ZP_07946812.1| hypothetical protein HMPREF1023_00510 [Eggerthella sp. 1_3_56FAA] gi|257474936|gb|ACV55256.1| hypothetical protein Elen_1287 [Eggerthella lenta DSM 2243] gi|316912656|gb|EFV34197.1| hypothetical protein HMPREF1023_00510 [Eggerthella sp. 1_3_56FAA] Length = 179 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 69/173 (39%), Gaps = 26/173 (15%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71 + G+ +VY H V + ++E G ++ + ++ + L V V +A +R Sbjct: 1 MYACGDTVVYRHH-VCEVAALRENYFEG--KDYLELRALFENSLKLFVAVDEATPDNLRP 57 Query: 72 L-------------SEAHFVERALKLVRGKARVKRTMWSRRAQE-YDAKINSGDLIAIAE 117 + +A ++ ++ A + RR +E YD ++ + + Sbjct: 58 IMSKRAALALIDSIVDADTIDE--NALKPDAPTPTLL-ERRMKEEYDKRLRTFAPEDLVP 114 Query: 118 VV-----RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 ++ R + R DS + ++++ ++ A + E+A ++ +++ Sbjct: 115 IMKSVHERTVRRVDSGRRITATDKKYFDLAEGLLCDELAVSLAVPRENVKDVL 167 >gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334] gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334] Length = 1174 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G T ++ EV G+ ++ I + + L +PV + + Sbjct: 496 KPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNND-KLFIPVDQLNLV 547 >gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1173 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I Sbjct: 486 QELKVGDYVVHVNHGIGKYVGIGTLEINGIHKDYLHILYAGGD-KLSVPIDQIDLI 540 >gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis SK1057] Length = 1167 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGVHRDYMTIQYQNSD-RISIPVDQID 542 >gi|320450396|ref|YP_004202492.1| transcription-repair coupling factor [Thermus scotoductus SA-01] gi|320150565|gb|ADW21943.1| transcription-repair coupling factor [Thermus scotoductus SA-01] Length = 980 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 16/118 (13%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+ +++P HGVG ++ +EV G++ ++ V+ + K + L +PV + + R Sbjct: 320 ALSPGDFLIHPDHGVGQYLGLETREVLGVRRDYLVLRY-KGEGKLYLPVEQLPLLR-RHP 377 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L +G+ W +R +E K D+ +A R L + Sbjct: 378 GTTDDPPELSSLGKGE-------W-QRLKEKARK----DVEELA--ARLLILQAKRKA 421 >gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius ED99] Length = 1170 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HGVG ++ V + ++ I + L VPV + + Sbjct: 496 QELNVGDYVVHVHHGVGRYLGVETLAVGDVHRDYIKIQYQGTD-QLFVPVDQMEQV 550 >gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4] Length = 1181 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ + G ++ + + L VPV + + Sbjct: 499 KVGDYVVHVNHGIGKYLGIETLMINGAHKDYLHLRYQGTD-KLYVPVEQIDLV 550 >gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1186 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 F+++ Q F + G+++V+ HGVG +I+ G + +F + + L Sbjct: 505 RFKKQNSKALQSFIDLKEGDYVVHIHHGVGKFLKIERTSAGGKERDFLKLEYSGGDS-LF 563 Query: 59 VPVGKAIDI 67 VP+ + + Sbjct: 564 VPLDQISLV 572 >gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar Lai str. 56601] gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar Lai str. 56601] Length = 1186 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 F+++ Q F + G+++V+ HGVG +I+ G + +F + + L Sbjct: 505 RFKKQNSKALQSFIDLKEGDYVVHIHHGVGKFLKIERTSAGGKERDFLKLEYSGGDS-LF 563 Query: 59 VPVGKAIDI 67 VP+ + + Sbjct: 564 VPLDQISLV 572 >gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 994 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 18/125 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ +GV I+ E G++ ++ + F + K L P + + R + Sbjct: 354 GDLMVHEDYGVCRFLGIEMIEQGGVQQDYIALEFAQGKRLLM-PTYRIARL-YRYAGDPA 411 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE-VVRDLHRTDSQPEKSYS- 134 E L ++ R WSR QE K AE ++ R S ++ Sbjct: 412 EAE--LDSLK------RGRWSRSYQEAKEKAR-----EAAERLLSAQARRHSARGIAFDP 458 Query: 135 -ERQL 138 ER++ Sbjct: 459 LEREM 463 >gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR] gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR] Length = 1178 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +++ EV G+ ++ +I + + L VP + + Sbjct: 509 SVGDYVVHVNHGIGRYLGLQKLEVGGVTKDYLIIQYTGED-KLYVPTDQISLV 560 >gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88] gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88] Length = 1030 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 4 QQKRDAMRQGF---------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + K+ ++GF + G++IV+ HG+G IK+ EV G + ++ + + D Sbjct: 490 KNKKLTNKKGFSRIKSFTDLKPGDYIVHVNHGIGVYKGIKQLEVGGHRKDYLELTYYGDD 549 Query: 55 MCLKVPVGKAIDI 67 L VPV + + Sbjct: 550 -KLYVPVEQLDIV 561 >gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1] Length = 1211 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+++V+ HG+G E+KE+ V G E+ V+ + K L VP +I Sbjct: 521 QPGDYVVHNQHGIGRFVEMKERTVQGATREYLVLEYASSKRGQPADRLFVPTDALDEI 578 >gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] Length = 1175 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +R Q + +++V+ HG+G IK EV G+ ++ + + D L VPV Sbjct: 485 TNAERIKSYQELKPNDYVVHVHHGIGKYLGIKTIEVGGIHQDYLHLVYAGDDA-LYVPVD 543 Query: 63 KAIDI 67 + + Sbjct: 544 QIDLV 548 >gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP] gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP] Length = 1054 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G TG+++++P HG+G ++ + V G+ ++ + + + L VP+ + + R Sbjct: 378 GLHTGDYLIHPEHGIGQFLGLETRTVLGVTRDYLNLEY-RGGSRLSVPIEQLSLLR-RHP 435 Query: 73 SEAHFVERALKLVRGKARVKRTMWSR---RAQEYDA 105 R + + WS+ RAQ+ Sbjct: 436 GTTDDPPRL-------SSFDKKDWSKAKARAQKNAE 464 >gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] Length = 1164 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus parasanguinis F0405] gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus parasanguinis F0405] Length = 764 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E++G+ ++ I + + +PV + + + ++ Sbjct: 491 GDYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGD-RISIPVDQIQMLS-KYVASDG 548 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + KL G R Q+ ++ + + IA+ DL + Y+ER Sbjct: 549 KTPKINKLNDG-----------RFQKTKQRVQT-QVEDIAD---DLIKL-------YAER 586 Query: 137 QLYE 140 E Sbjct: 587 SQLE 590 >gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] Length = 1164 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|331694753|ref|YP_004330992.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans CB1190] gi|326949442|gb|AEA23139.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans CB1190] Length = 1194 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 11/77 (14%) Query: 2 TFQQKRDAMRQG------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 +K A R+ + G+ +V+ HG+G E++E+ V G E+ V+ + K Sbjct: 489 ATARKMPARRRNAVDLAVLQPGDFVVHSQHGIGKFVEMRERTVQGATREYLVLEYASSKR 548 Query: 56 -----CLKVPVGKAIDI 67 L VP +I Sbjct: 549 GQPADRLFVPTDALDEI 565 >gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT 5716] Length = 1113 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK EV G+ ++ V+ + +D + VPV + + Sbjct: 430 KPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDY-RDNAQIFVPVTQLNLV 481 >gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] Length = 1165 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLRLV 543 >gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1] gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1] Length = 1164 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] Length = 1164 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC 35405] gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC 35405] Length = 1155 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 14/113 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G I+ ++ + ++ + + + +P+ +A + R + Sbjct: 493 NPGDYVVHVNYGIGKFRGIERVKILDTERDYINL-LYANDETVFIPIEQADLVQ-RYIGN 550 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L ++ K+ W R K+ + IA + DL+ Sbjct: 551 EGEAPH-LDILGSKS------WENR----KNKVKK-SVEDIAAKLIDLYSKRK 591 >gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] Length = 1164 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM 20547] gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM 20547] Length = 1244 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M ++++ G+ IV+ HGVG E+ ++ V G E+ V+ + K Sbjct: 544 MPSRRRKMVDPLQLNPGDFIVHEQHGVGRFIEMVQRTVGGATREYLVLEYASSKRGQPAD 603 Query: 56 CLKVPVGKAIDI 67 L VP + I Sbjct: 604 RLFVPTDQLDQI 615 >gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA2] Length = 1208 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA3] gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA4] Length = 1208 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes HL001PA1] gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes HL082PA2] gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes HL060PA1] gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes HL103PA1] Length = 1208 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC 15444] gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC 15444] Length = 1145 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG +K EV G + + + M + +PV I Sbjct: 441 PGDLVVHIDHGVGKYIGLKTLEVTGAPHDCLQLEYAGGDM-IFIPVENIDLI 491 >gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] Length = 1092 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 1 MTFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 +T + + F + G+++V+ G+G ++ EV G+ ++ + + L Sbjct: 412 LTKTKGKGPALNYFSDIKAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGD-KL 470 Query: 58 KVPVGKAIDIGM 69 VPV +G+ Sbjct: 471 HVPV---EQVGL 479 >gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense DCB-2] gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense DCB-2] Length = 1197 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 6 KRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++ R F + G+ +V+ HG+G I+ V G++ ++F + + L VP+ Sbjct: 512 EKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQD-KLYVPLD 570 Query: 63 K 63 + Sbjct: 571 Q 571 >gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] Length = 1164 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E+ G ++ V+ + + L VP K + Sbjct: 500 GDYVVHENHGIGKYLGVKTLEIQGQHKDYLVLKYAGED-KLYVPTDKINLV 549 >gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] Length = 1195 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+ +V+ HG+G E+ ++ V G E+ V+ + K Sbjct: 494 MPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVGGATREYLVLEYASSKRGQPGD 553 Query: 56 CLKVPVGKAIDI 67 L VP + ++ Sbjct: 554 RLFVPTDQLDEV 565 >gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51] gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1178 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 6 KRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++ R F + G+ +V+ HG+G I+ V G++ ++F + + L VP+ Sbjct: 493 EKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQD-KLYVPLD 551 Query: 63 K 63 + Sbjct: 552 Q 552 >gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis DSM 43017] gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis DSM 43017] Length = 1199 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ ++G+++V+ HG+G E+ + V G E+ VI + K Sbjct: 497 MPSRRRNAVDPLALKSGDYVVHDQHGIGRFVEMVRRTVGGATREYLVIEYAPSKRGHPGD 556 Query: 56 CLKVPVGKAIDI 67 L VP + ++ Sbjct: 557 RLFVPTDQLDEV 568 >gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis HTCC2503] gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis HTCC2503] Length = 1163 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ IV+ HG+G ++ EV G + ++ + K L +PV Sbjct: 489 TEASSLSVGDLIVHVDHGIGRYDGLETLEVGGAPHDCLILTYQKGD-KLFLPVENIE 544 >gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266] Length = 1222 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 538 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 595 >gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes SK137] gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes SK137] Length = 1222 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 538 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 595 >gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] Length = 1180 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK EV G+ ++ V+ + +D + VPV + + Sbjct: 497 KPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDY-RDNAQIFVPVTQLNLV 548 >gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] Length = 1180 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK EV G+ ++ V+ + +D + VPV + + Sbjct: 497 KPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDY-RDNAQIFVPVTQLNLV 548 >gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes HL097PA1] Length = 1208 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA1] gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA2] gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes HL086PA1] gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes HL082PA1] gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes HL053PA2] gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes HL078PA1] gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes HL092PA1] Length = 1208 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM 12042] gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM 12042] Length = 1147 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ IV+ HGVG I +E G+ +F + + + L VP+ + + RK Sbjct: 477 QELQPGDFIVHSQHGVGQYLGIVTREFNGVHKDFLRVVYKGND-ELLVPLEQFRLV--RK 533 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 V L + K +R ++ +I Sbjct: 534 FVSREGVVPKLNKLGSHDWEKT---KQRLKDNVNEIA 567 >gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC BAA-974] gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC BAA-974] Length = 1155 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 +TG+ +V+ HGVG E+ E+ VAG + E+ V+ + K L VP+ + Sbjct: 527 ALKTGDFVVHDQHGVGRFVELVERTVAGARREYVVVEYASSKRGHPPDRLYVPMDALDQL 586 >gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA1] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes HL007PA1] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes HL074PA1] gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes HL083PA1] gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes HL056PA1] gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes HL053PA1] gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes HL045PA1] gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA1] gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes HL038PA1] gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes HL096PA2] gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes HL043PA1] gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes HL043PA2] gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes HL099PA1] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] Length = 1180 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK EV G+ ++ V+ + +D + VPV + + Sbjct: 497 KPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDY-RDNAQIFVPVTQLNLV 548 >gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes KPA171202] gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes KPA171202] Length = 1222 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 538 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 595 >gi|85717289|ref|ZP_01048243.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A] gi|85695878|gb|EAQ33782.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A] Length = 1174 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 18/115 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ EV G + + + ++ L +PV + R S+ Sbjct: 505 GDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYA-NETKLFLPVENIELLS-RYGSDHA 562 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE L + G W R AK+ S I E+ +L R ++ Sbjct: 563 SVE--LDRLGGGG------WQAR----KAKLKS----RIREIAGELIRIAAERHL 601 >gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes HL013PA1] gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA2] gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes HL025PA1] gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes HL059PA1] gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes HL046PA2] gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA1] gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA2] gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes HL063PA1] gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes HL063PA2] gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA4] gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA1] gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA3] gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes HL067PA1] gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes HL027PA1] gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA1] gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA2] gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes HL072PA2] gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA3] gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes HL072PA1] gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes HL059PA2] gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes HL046PA1] gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes HL030PA1] gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes HL030PA2] gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes HL096PA3] gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes HL013PA2] gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA3] gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes HL083PA2] gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA1] gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes HL025PA2] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA3] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|317133014|ref|YP_004092328.1| transcription-repair coupling factor [Ethanoligenens harbinense YUAN-3] gi|315470993|gb|ADU27597.1| transcription-repair coupling factor [Ethanoligenens harbinense YUAN-3] Length = 1179 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ AHG+G I + V G+ ++ I + L VPV + + Sbjct: 493 PGDYVVHAAHGIGVYEGIHKLTVQGVVKDYIKIRYAGRD-TLYVPVTQLDLV 543 >gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA2] gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA3] gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes HL027PA2] gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes HL020PA1] Length = 1208 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 524 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 581 >gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] Length = 1111 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ +G+G I+ +E+ G+K ++ + F+ + L +P+ Sbjct: 450 GDYVVHVDYGIGIYRGIENKEIGGIKGDYIKVEFENGE-NLYIPISNI 496 >gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165] gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165] Length = 1198 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 514 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 571 >gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes SK187] gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes SK187] Length = 1198 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 514 KPGDLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 571 >gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1158 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R + G+ +V+ AHG+G ++ + G E+ VI + + + Sbjct: 472 RQASSRQVDPNLLKPGDFVVHKAHGIGQFLRLETLTIGGETREYLVIQYSDGLLRV 527 >gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] Length = 1164 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase [Anaerococcus vaginalis ATCC 51170] gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase [Anaerococcus vaginalis ATCC 51170] Length = 1164 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G I + EV K ++FVI + + + VPV + + Sbjct: 498 EIGDYVVHENNGIGIYKGISKIEVNNTKKDYFVIEYKGND-KVFVPVDQMGLV 549 >gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] Length = 1179 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK V G+ ++ VI + +D + VPV + + Sbjct: 498 KPGDYVVHVNHGIGIFAGIKTMTVDGVHQDYIVIDY-RDHAQIFVPVTQLNLV 549 >gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC 5463] Length = 1055 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1] gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1] Length = 935 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGKVPHI-------NKLGSAEWAK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] Length = 1164 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] Length = 1164 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM 44928] gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM 44928] Length = 1182 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 17/108 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG E+ ++ VAG E+ VI + K G R Sbjct: 507 KAGDPVVHEQHGVGRYVEMAQRTVAGATREYLVIEYA---------AAKRGQPGDRLFVP 557 Query: 75 AHFVERALKLVRGKA----RVKRTMW---SRRAQEYDAKINSGDLIAI 115 +++ K V G+A R+ W RA++ +I GDL+ + Sbjct: 558 TDQLDQVTKYVGGEAPSLHRLGGADWQKAKSRARKAVKQIA-GDLVKL 604 >gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1118] Length = 1164 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus H10] Length = 1165 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|299133932|ref|ZP_07027126.1| transcription-repair coupling factor [Afipia sp. 1NLS2] gi|298591768|gb|EFI51969.1| transcription-repair coupling factor [Afipia sp. 1NLS2] Length = 1172 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 TG+ +V+ HG+G ++ EV+G + + + + L +PV + R SE Sbjct: 502 TGDLVVHVEHGIGRYIGLQTLEVSGAPHDCLELHYA-NNAKLYLPVENIELLS-RYGSEQ 559 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G W R + +I GDLI +A Sbjct: 560 GGVE--LDRLGGGG------WQARKAKLKNRIREIAGDLIKVA 594 >gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] Length = 1165 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] Length = 1165 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + L VP + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGD-QLFVPADQLSLV 543 >gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] Length = 1163 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 12/110 (10%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A Q G+ IV+ HG+G ++ V K + + + L +PV + Sbjct: 479 AELQTLSVGDLIVHTEHGIGKYLGLEPVSVGKSKHDCVQLEYKGGD-KLFIPVENIDVLS 537 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 R S V L + G+A W +R +I G+L+ +A Sbjct: 538 -RYGSSEEAV--MLDRLGGEA------WQKRRARLKERIREIAGELMQVA 578 >gi|237752073|ref|ZP_04582553.1| transcription-repair coupling factor [Helicobacter winghamensis ATCC BAA-430] gi|229376640|gb|EEO26731.1| transcription-repair coupling factor [Helicobacter winghamensis ATCC BAA-430] Length = 1011 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 4 QQKRDAMR---QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 QQKR ++ + G+++V+ +G+ + I + + G +F + + + L +P Sbjct: 361 QQKRAKVKILLDELKVGDYVVHCDYGIAIFSGITQANIFGATRDFIALRYLGED-KLLLP 419 Query: 61 VGKAIDIGMRKLSEAHFVERALKLV 85 V I R ++++ + L + Sbjct: 420 VENLDRID-RYIADSGGIP-ILDKL 442 >gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] Length = 1183 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK EV G + ++ +++ L VPV + I Sbjct: 501 QELNVGDYVVHVNHGIGRYMGIKTLEVDGRRNDYLYLSYAGGDS-LYVPVDQIDQI 555 >gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1201 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K Sbjct: 487 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYASSKRGGGSD 546 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 547 KLYVPMDSLDQL 558 >gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4] gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4] Length = 1192 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+++V+ HG+G E+ ++ VAG E+ ++ + K Sbjct: 493 MPSRRRGAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRGQPGD 552 Query: 56 CLKVPVGKAIDI 67 L VP + ++ Sbjct: 553 RLFVPTDQLDEV 564 >gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD 2020] gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD 2020] Length = 1167 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + + +PV + + Sbjct: 490 IGDYVVHNVHGIGKFLGIETIEIHGVHRDYVTIQYQNSD-RISLPVEQIESL 540 >gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402 065] Length = 1168 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + R + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMVQ-RYIGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + +++ + W++ K+ + IAE DL + Sbjct: 560 EGKKPKV-------SKLGSSEWTK----TKNKVKK-SIEEIAE---DLVKL 595 >gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1183 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK EV G + ++ +++ L VPV + I Sbjct: 501 QELNVGDYVVHVNHGIGRYMGIKTLEVDGRRNDYLYLSYAGGDS-LYVPVDQIDQI 555 >gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] Length = 1178 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G +K EV G ++ I++ KD L +PV + I + +S Sbjct: 497 KPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISY-KDNAKLFIPVTQLNLIQ-KYVSS 554 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKSY 133 R ++ + W++ AK+ S + IA+ + DL+ + ++ +Y Sbjct: 555 EDKHPRI-------NKLGGSEWAK----TKAKVAS-KIEDIADELIDLYAKRSAEKGYAY 602 >gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1221 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K Sbjct: 505 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYASSKRGGGSD 564 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 565 KLYVPMDSLDQL 576 >gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM 2489] gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM 2489] Length = 1246 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 14/112 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G++IV+ +G+G I+ + G + ++ + + +++ VP+ + + R + Sbjct: 585 PGDYIVHVNYGIGLFKGIERVKAMGTERDYIKLEYADEEI-AFVPIEQVNMVQ-RYIGSE 642 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 + R R+ WS R + K + IAE + DL+ Sbjct: 643 NEKPRL-------DRIGSKNWSARKAKVQQK-----VEEIAEKLIDLYSKRQ 682 >gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 1166 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ V G+ ++ I + D L VPV + + Sbjct: 502 VGSYVVHVNYGIGKYEGIEKITVDGVTKDYLKIKYAGDD-KLFVPVEQLDLV 552 >gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str. 230613] Length = 1168 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + R + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMVQ-RYIGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + +++ + W++ K+ + IAE DL + Sbjct: 560 EGKKPKV-------SKLGSSEWTK----TKNKVKK-SIEEIAE---DLVKL 595 >gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei U32] gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei U32] Length = 1184 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ ++G+++V+ HG+G E+ ++ VAG E+ ++ + K Sbjct: 485 MPSRRRNAVDPLALKSGDYVVHEQHGIGRFVEMVQRTVAGATREYLLLEYGSSKRGHPGD 544 Query: 56 CLKVPVGKAIDI 67 L VP + ++ Sbjct: 545 RLFVPTDQLDEV 556 >gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] Length = 1168 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + R + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMVQ-RYIGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + +++ + W++ K+ + IAE DL + Sbjct: 560 EGKKPKV-------SKLGSSEWTK----TKNKVKK-SIEEIAE---DLVKL 595 >gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] Length = 1168 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + R + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMVQ-RYIGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + +++ + W++ K+ + IAE DL + Sbjct: 560 EGKKPKV-------SKLGSSEWTK----TKNKVKK-SIEEIAE---DLVKL 595 >gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] Length = 1168 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + R + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMVQ-RYIGS 559 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 + +++ + W++ K+ + IAE DL + Sbjct: 560 EGKKPKV-------SKLGSSEWTK----TKNKVKK-SIEEIAE---DLVKL 595 >gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab] gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab] Length = 1156 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R + G+ +V+ AHG+G ++ + G E+ VI + + + Sbjct: 472 RQASSRQVDPNLLKPGDFVVHKAHGIGQFLRLESLTIGGETREYLVIQYSDGLLRV 527 >gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1232 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + + G+ +V+ HGVG E+ ++ VAG E+ VI + K Sbjct: 509 MPTKRRNQVVPLELKPGDPLVHEQHGVGRFVEMTQRTVAGAIREYMVIEYAASKRGQPGD 568 Query: 56 CLKVPVGKAIDI 67 L VP+ + + Sbjct: 569 RLYVPMDQLDQV 580 >gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] Length = 1164 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 491 GDYVVHNVHGIGRYLGIETIEISGIHRDYLTIQYQNAD-RISIPVDQIQ 538 >gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] Length = 1165 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGKVPHI-------NKLGSAEWAK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] Length = 1165 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGKVPHI-------NKLGSAEWAK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale str. Mississippi] Length = 1099 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 440 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 492 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 493 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 538 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 539 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 578 >gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM 44728] gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM 44728] Length = 1351 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M ++K G+++V+ HGVG E+ + V G + E+ VI + K Sbjct: 658 MPSRRKGGVNPLELSNGDYVVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPAD 717 Query: 56 CLKVPVGKAIDI 67 L VP + Sbjct: 718 RLFVPTDALDQL 729 >gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale str. Puerto Rico] Length = 1152 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 493 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 545 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 546 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 591 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631 >gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str. Israel] gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str. Israel] Length = 1122 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 463 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 515 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 516 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 561 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 562 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 601 >gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] Length = 1174 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+E +V G+K ++ I + + L VP + I Sbjct: 503 KVGDYVVHEGHGIGKYIGIEELKVEGVKKDYLKIRYSGEGF-LYVPTDQMDLI 554 >gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] Length = 1174 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ HG+G I+E V G+K ++ I + + L VP + I Sbjct: 503 QVGDHVVHEGHGIGKYIGIEELSVEGIKKDYIKIRYSGEDH-LYVPTDQMNLI 554 >gi|309799277|ref|ZP_07693525.1| transcription-repair coupling factor [Streptococcus infantis SK1302] gi|308117122|gb|EFO54550.1| transcription-repair coupling factor [Streptococcus infantis SK1302] Length = 570 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E+ G+ ++ + + + +PV + + Sbjct: 492 QKGDYVVHQIHGIGQYLGIETIEIKGIHRDYVSVLYQNGD-RISIPVEQIQTL 543 >gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii 27-2-CHN] gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii 115-3-CHN] gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii 27-2-CHN] gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii 115-3-CHN] gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] Length = 1162 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK +V G K ++ I + L VP + + Sbjct: 491 KPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHD-QLFVPADQLSLV 542 >gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii JV-V16] gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii JV-V16] Length = 1162 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK +V G K ++ I + L VP + + Sbjct: 491 KPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHD-QLFVPADQLSLV 542 >gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus] gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus] Length = 1164 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ + G+ ++ I + + + +PV + + Sbjct: 491 GDYVVHSVHGIGRFLGIETINIQGVHRDYVTIQYQQSD-RISLPVDQLESL 540 >gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale str. Florida] gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale str. Florida] Length = 1152 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 493 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 545 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 546 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 591 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631 >gi|209885332|ref|YP_002289189.1| transcription-repair coupling factor [Oligotropha carboxidovorans OM5] gi|209873528|gb|ACI93324.1| transcription-repair coupling factor [Oligotropha carboxidovorans OM5] Length = 1171 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 TG+ +V+ HG+G ++ EV+G + + + + L +PV + R +E Sbjct: 501 TGDLVVHVEHGIGRYIGLQTLEVSGAPHDCLELHYA-NNAKLYLPVENIELLS-RYGAEG 558 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G W R + +I GDLI IA Sbjct: 559 AGVE--LDRLGGGG------WQARKAKLKNRIREIAGDLIKIA 593 >gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes HL044PA1] Length = 1194 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 ++G+ +V+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 514 KSGDFVVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 571 >gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] Length = 1165 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ + W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGRVPHI-------NKLGSSEWTK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1158 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I+ E G K ++ I + K L VP + + Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGD-QLFVPDDQLSLV 537 >gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] Length = 1183 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G +++ +V G+K ++ +I + L VPV + + Sbjct: 505 KEGDYVVHVHHGIGRYLGLQQLDVGGVKKDYLLIQYAGKD-RLYVPVDQVSLV 556 >gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA2] gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA3] gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08] Length = 1194 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 ++G+ +V+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 514 KSGDFVVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 571 >gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] Length = 1165 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + + L VP + + Sbjct: 492 KPGDYVVHINHGIGRFEGIKTLENNGVKRDYITITYQRGD-QLFVPADQLSLV 543 >gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp. equi 4047] gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi subsp. equi 4047] Length = 1164 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ + G+ ++ I + + + +PV + + Sbjct: 491 GDYVVHSVHGIGRFLGIETINIQGVHRDYVTIQYQQSD-RISLPVDQLESL 540 >gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] Length = 1165 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK E G+K ++ I + + L VP + + Sbjct: 492 KPGDYVVHINHGIGRFEGIKTLENNGVKRDYITITYQRGD-QLFVPADQLSLV 543 >gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580] gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580] Length = 1154 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 14/112 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G I+ + G + ++ + + +D+ + +P+ +A + R + Sbjct: 492 NPGDYVVHVNYGIGQFKGIERVKTLGHERDYINLLYAQDE-TVFIPIEQANLVQ-RYIGN 549 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126 R L ++ KA W R K+ + IA+ + DL+ Sbjct: 550 EGEAPR-LDIIGSKA------WENR----KNKVKK-SVEDIADKLIDLYSRR 589 >gi|296272208|ref|YP_003654839.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM 7299] gi|296096383|gb|ADG92333.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM 7299] Length = 989 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + +V+ HG+G I+ V G K +F ++A+ + L +PV I R +++ Sbjct: 358 VNDFVVHEQHGIGQYKGIEPVVVMGAKRDFVIVAYANED-KLLIPVENIDLID-RYVAD 414 >gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale str. Virginia] Length = 1148 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 489 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 541 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 542 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 587 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 588 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 627 >gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] Length = 1171 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGKVPHI-------NKLGSAEWAK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] Length = 1168 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMV 553 >gi|154253521|ref|YP_001414345.1| transcription-repair coupling factor [Parvibaculum lavamentivorans DS-1] gi|154157471|gb|ABS64688.1| transcription-repair coupling factor [Parvibaculum lavamentivorans DS-1] Length = 1171 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 13/116 (11%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HG+G ++ EV G + ++ + L +PV + Sbjct: 493 TEASSLSPGDLVVHVDHGIGRFERLQTIEVMGAPHDCLLLIYHGGD-KLYLPVENIELLS 551 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIAEVVRDL 122 R + ++ L + G T W R +I G+LI IA R+L Sbjct: 552 -RY--GSDDLDAQLDRLGG------TGWQARKARLKERIREMAGELIKIAA-AREL 597 >gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] Length = 1181 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 498 KVGDYVVHANHGIGKYIGMETLEVDGIHQDYITILYQNDD-KLFIPVTQLNLI 549 >gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St. Maries] gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St. Maries] Length = 1152 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ +GVG ++ V G +F I + + VPV L Sbjct: 493 VGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNND-KFFVPVEDI------DLITK 545 Query: 76 --HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + T W R AK+ + IA+ L +++ + Sbjct: 546 YGTNTDVVLDKL------GSTSWQER----SAKLKK-RIKDIAQ---TLLHSEAMRVLAE 591 Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 + L +E V + + +AI+ +E +L+S Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631 >gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] Length = 1165 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ + W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGRVPHI-------NKLGSSEWTK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862] Length = 1172 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HGVG ++ E G+K ++ IA+ + + +PV + + Sbjct: 497 KPGDYVVHINHGVGVYEGMQTIENRGVKQDYITIAY-QQDAKIFIPVTQLDLV 548 >gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] Length = 1165 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 19/123 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM--RKL 72 + G+++V+ HG+G IK +V G K ++ I + L VP A +G+ + + Sbjct: 492 KPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHD-QLFVP---ADQLGLVQKYV 547 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEK 131 + V ++ + W++ K + IA+ + +L+ + +S+ Sbjct: 548 ASEGRVPHI-------NKLGSSEWTK-----TKKRVQSKVEDIADDLIELYAKRESEKGF 595 Query: 132 SYS 134 ++S Sbjct: 596 AFS 598 >gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] Length = 1165 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HGVG + E+ G+ ++ I + + +PV + Sbjct: 489 SVGDYVVHNVHGVGKFLGXETIEIQGIHRDYLTIQYQNAD-RISIPVEQIE 538 >gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1175 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ IA+ ++ + +PV + + Sbjct: 497 KPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAY-QNNAKIFIPVTQLNLV 548 >gi|220930375|ref|YP_002507284.1| hypothetical protein Ccel_3010 [Clostridium cellulolyticum H10] gi|220000703|gb|ACL77304.1| hypothetical protein Ccel_3010 [Clostridium cellulolyticum H10] Length = 162 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 9/158 (5%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 F TGE+++ GV + +I E + + + + + VP ++ +I +R + Sbjct: 1 MFNTGEYVICSQGGVWKVMDIVEDK--------YHLQKHESGDRIIVPTTESGEI-VRGI 51 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 S + + V +K R + Y+ + D + ++++ + Sbjct: 52 SSKEKILDVINRVDFITTIKAPNDKIRKELYEDALKEFDEVGWIKIIKSSYLRKQDGRLM 111 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 E + E A + + EI+ V I + I +S Sbjct: 112 QGETEYAEMAKSYLHGEISVVMGIPVNKVEGYISTAVS 149 >gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256] gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256] Length = 1194 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 25/142 (17%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + +QKR F G+ +V+ HG+G + V + + + Sbjct: 503 LVRRQKRRKSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGNSPHDCVALTYAGG 562 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113 L VPV + R E+ V AL + G+A W RR +I Sbjct: 563 D-KLYVPVENLDVLS-RYGGESDGV--ALDKLGGEA------WQRRKARMKERIR----- 607 Query: 114 AIAEVVRDLHRTDSQPEKSYSE 135 E+ +L T +Q E Sbjct: 608 ---EIAGELLATAAQRALRPGE 626 >gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii SJ-7A-US] gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii SJ-7A-US] Length = 1161 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK +V G K ++ I + L VP + + Sbjct: 490 KPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHD-QLFVPADQLSLV 541 >gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3] gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3] gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] Length = 1161 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK +V G K ++ I + L VP + + Sbjct: 490 KPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHD-QLFVPADQLSLV 541 >gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1175 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ IA+ ++ + +PV + + Sbjct: 497 KPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAY-QNNAKIFIPVTQLNLV 548 >gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1169 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + + + +PV + + Sbjct: 495 GDYVVHHVHGIGQFLGIETIEIHGVHRDYLTIQY-QGSSTISLPVEQIESL 544 >gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] Length = 1168 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + Sbjct: 502 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMV 553 >gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] Length = 1175 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%) Query: 1 MTFQQKRDAMRQG--------------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46 M Q++R A +QG + G+++V+ HG+G I EV G+ ++ Sbjct: 462 MFSQKQRKARKQGRHVDNAERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYM 521 Query: 47 VIAFDKDKMCLKVPVGKAIDI 67 I + L VP+ + I Sbjct: 522 HILYAGGD-KLSVPIEQIDLI 541 >gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] Length = 1175 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ IA+ ++ + +PV + + Sbjct: 497 KPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAY-QNNAKIFIPVTQLNLV 548 >gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1] gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1] Length = 1167 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 25/135 (18%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G +K E AG E I + D L +PV + Sbjct: 492 SEASALSAGDIVVHADHGIGRFVGLKTIEAAGAPHECLEIHYAGDD-RLFLPVENIELLS 550 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R + E L + G A W R AK+ + E+ L + Sbjct: 551 -RY--GSDSAEATLDKLGGGA------WQSR----KAKLK----KRLLEMAGQLIKL--- 590 Query: 129 PEKSYSERQLYESAL 143 +ERQ+ +A Sbjct: 591 ----AAERQMRPAAK 601 >gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT 1] gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT 1] Length = 1177 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G ++ +V G + ++ I + + L +P+ + + RK Sbjct: 502 QELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGND-KLYIPIEQIDVV--RK 558 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSR 98 + + + G WSR Sbjct: 559 YIGVEGKKPKMSALGGGE------WSR 579 >gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] Length = 1172 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G IK+ E+ G K ++ + + D L VPV + + Sbjct: 506 KPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSDD-KLYVPVEQLDMV 557 >gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] Length = 1175 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ IA+ ++ + +PV + + Sbjct: 497 KPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAY-QNNAKIFIPVTQLNLV 548 >gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] Length = 1167 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 24/126 (19%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G I+ E+ G+ ++ I + + +PV + + + +S Sbjct: 492 QKGDYVVHQIHGIGQYLGIETIELKGIHRDYVSIQYQNGD-RISIPVEQIQTLS-KYVSS 549 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + KL G R ++ K+ + + IA+ DL + Y+ Sbjct: 550 DGKAPKLNKLNDG-----------RFKKAKQKVKN-QVEDIAD---DLIKL-------YA 587 Query: 135 ERQLYE 140 ER E Sbjct: 588 ERSQLE 593 >gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] Length = 909 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 19/117 (16%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+ +V+ +G+ + ++ EF ++ F + L VP + + +K Sbjct: 269 FNIGDIVVHKEYGIAKFVGTTKITQKDLEREFLILQF--NDSKLFVPTDRLDLV--QKYI 324 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + L ++ + WS+R + K S I ++V+++ R ++ + Sbjct: 325 GTNE-NVTLDNLK------KNNWSKRVK----KAKS----QIEKIVKEILRINALRK 366 >gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus F0211] gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus F0211] Length = 1168 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 24/123 (19%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ E++G+ ++ I + + +PV + + + ++ Sbjct: 495 GDYVVHNVHGIGRYLGIETIEISGIHRDYLTIQYQNAD-RISIPVDQIHLLS-KYVASDG 552 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + KL G+ + +R Q IAE DL + YSER Sbjct: 553 KAPKINKLNDGRFQKT----KQRVQHQVE--------DIAE---DLIKL-------YSER 590 Query: 137 QLY 139 Sbjct: 591 SQL 593 >gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus SPIN 20026] gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus SPIN 20026] Length = 1166 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ ++ G+ ++ I + + +PV + + K A Sbjct: 491 GDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPVEQIES--LSKYVSAD 547 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 E + + R Q+ K+ S + IA+ DL R ++ + Sbjct: 548 GKEPKINKLNDG----------RFQKTKQKV-SKQVEDIAD---DLLRLYAERSQ 588 >gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1176 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 F+++ Q F + G+ +V+ HGVG +I+ G + +F + + L Sbjct: 495 RFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKIERTNAGGKERDFLKLEYAGGDS-LF 553 Query: 59 VPVGKAIDI 67 VP+ + I Sbjct: 554 VPLDQISLI 562 >gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946] gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946] Length = 988 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+++++P HG+G ++ +E+ G+K ++ ++ + + L +PV + Sbjct: 323 GETGDPSALAPGDYLIHPEHGIGQFVGLEPREILGVKRDYLILQYA-GEARLYLPVEQ 379 >gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249] gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249] Length = 1167 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|146319860|ref|YP_001199571.1| transcription-repair coupling factor [Streptococcus suis 98HAH33] gi|145690666|gb|ABP91171.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 98HAH33] Length = 845 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 16 TGEHIVYPA-HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V P HG+G I+ E++G+ ++ + + + +PV + Sbjct: 172 VGDYVV-PHVHGIGQYLGIETIEISGIHRDYLTVQYQNSD-RISIPVEQID 220 >gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGIHRDYVTIQYQNAD-RVSIPVDQIQ 542 >gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300] gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1166 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ G+ ++ I + D L +PV + I Sbjct: 502 VGSYVVHVNYGIGKYEGIEKITFDGVTKDYLKIKYAGDD-KLFIPVDQLDLI 552 >gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW] gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW] Length = 1209 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G G+ +V+ HG+G ++ +V G + + ++ L VPV Sbjct: 492 AEASGLNPGDLVVHIDHGIGRYDGLETLDVGGAPHDCLRLVYEGGD-KLYVPVENIE 547 >gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC 35037] Length = 1166 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 491 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 538 >gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEISGIHRDYVTIQYQNAD-RVSIPVDQIQ 542 >gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B] gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B] Length = 1157 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +HG+G ++ EV+G+K ++ VI + D L +P+ I Sbjct: 496 VGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDD-KLFLPIESLDLI 546 >gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143] gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68] gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3] gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3] Length = 1164 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ + + + +PV + Sbjct: 491 VGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNFD-RISIPVEQID 539 >gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1166 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + + + +PV + + Sbjct: 492 GDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQY-QGSSTISLPVEQIESL 541 >gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1170 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + + + +PV + + Sbjct: 496 GDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQY-QGSSTISLPVEQIESL 545 >gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ +V+G K ++ I +DK L VPV + I Sbjct: 504 KPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYLDIVYDKGD-KLYVPVEQLDLI 555 >gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591] gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591] Length = 1164 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E++G+ ++ + + + +PV + Sbjct: 491 VGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNFD-RISIPVEQID 539 >gi|292669445|ref|ZP_06602871.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541] gi|292648898|gb|EFF66870.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541] Length = 1097 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ +HG+G ++ EVAG+ ++ I + D L VP + Sbjct: 430 PGDYVVHVSHGIGKYIGVETLEVAGVHRDYLHIQYGGDD-KLFVPTDQV 477 >gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ +V+G K ++ I +DK L VPV + I Sbjct: 504 KPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYLDIVYDKGD-KLYVPVEQLDLI 555 >gi|302335359|ref|YP_003800566.1| hypothetical protein Olsu_0571 [Olsenella uli DSM 7084] gi|301319199|gb|ADK67686.1| conserved hypothetical protein [Olsenella uli DSM 7084] Length = 165 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK---MCLKVPVGKAIDIGM 69 + G++IV+P GV + EI V + +++ M + PV A + + Sbjct: 1 MYEVGQYIVHPGQGVCKVEEIVSDPV-----QVYML-MPVGGRHPMRISFPV--ASEGRL 52 Query: 70 RKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQE-YDAKINSG---DLIAIAEVVR---D 121 R + + + A S +E Y ++ G D + IA+ R D Sbjct: 53 RPVLSRSEARQLIGEYDEMALEDFSCNSSALEEEHYKNEMRRGTCRDSVRIAKTFRKRID 112 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 R ++ ER + + A R + E+A ++ + + Sbjct: 113 DVRACNKKPPVVYER-ILKQARERSLAELAVALDVTPDDVSVM 154 >gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC 700338] gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC 700338] Length = 1169 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ E+ G+ ++ I + + + +PV + + Sbjct: 495 GDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQY-QGSSTISLPVEQIESL 544 >gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans UA159] gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans UA159] Length = 1162 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ EV+G+ ++ I + + +P+ + Sbjct: 491 GDYVVHNVHGIGRFLGIETIEVSGVHRDYLTIQYQNAD-RISIPIEQIE 538 >gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6] gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6] Length = 1169 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQSGD-KISIPVEQI 538 >gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans NN2025] gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans NN2025] Length = 1162 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ EV+G+ ++ I + + +P+ + Sbjct: 491 GDYVVHNVHGIGRFLGIETIEVSGVHRDYLTIQYQNAD-RISIPIEQIE 538 >gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon 786 str. D14] gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon 786 str. D14] Length = 1177 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I EV G+ ++ I + L VP+ + I Sbjct: 493 KVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGD-KLSVPIEQIDMI 544 >gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] Length = 1173 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ EV +K ++ ++++ L VPV + I Sbjct: 506 KPGDYVVHANHGIGVYKGIKQLEVENVKKDYLMVSYSDGD-TLYVPVEQLDLI 557 >gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1087-00] gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1087-00] Length = 953 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|157736671|ref|YP_001489354.1| transcription-repair coupling factor [Arcobacter butzleri RM4018] gi|157698525|gb|ABV66685.1| transcription-repair coupling factor [Arcobacter butzleri RM4018] Length = 995 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 + +V+ +G+G I+ V G K +F +I + + L VPV I R +++ + Sbjct: 365 NDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGED-KLLVPVENLDLID-RYVADGN 422 Query: 77 ---FVERA----LKLVRGKARVK 92 V++ ++ K + K Sbjct: 423 SYAVVDKLGKGSFAKLKEKVKDK 445 >gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G IK+ +V+G K ++ I +DK L VPV + I Sbjct: 504 KPGDYVVHINHGIGVYKGIKQIDVSGHKRDYLDIVYDKGD-KLYVPVEQLDLI 555 >gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J] gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis 0140J] Length = 1166 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 15/119 (12%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ ++ G+ ++ I + + +PV + + K A Sbjct: 491 GDYVVHNVHGIGKFLGIETIQIHGIHRDYVTIQYQNSD-TISLPVEQIES--LSKYVSAD 547 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKSYS 134 E + + R Q+ K+ + IA+ + L+ Q S+S Sbjct: 548 GKEPKINKLNDG----------RFQKTKQKVAK-QVEDIADDLLKLYAERSQQKGFSFS 595 >gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321] gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321] Length = 1167 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1166 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 15/120 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + K A Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGS--LSKYVSA 546 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVVRDLHRTDSQPEKSYS 134 E + + R Q+ K+ + IA E+++ Q S+S Sbjct: 547 DGKEPKINKLNDG----------RFQKTKQKVAR-QVEDIADELLKLYAERSQQKGFSFS 595 >gi|150021721|ref|YP_001307075.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho melanesiensis BI429] gi|149794242|gb|ABR31690.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis BI429] Length = 901 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 19/120 (15%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 ++ F+ G+++V+ +G+ + I + ++ EF ++ F L VP + + + Sbjct: 263 QEDFQIGDYVVHKEYGIAKFSGITKITQKNLEREFLILQF--KDSKLFVPTDRLDLVQ-K 319 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + + V+ L +R ++ W R + AK I V++L R ++ + Sbjct: 320 YIGASETVK--LDNLR------KSNWIR--KVNKAK------KEIQNTVKELLRLNALRK 363 >gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1097 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ +HG+G ++ EVAG+ ++ I + D L VP + Sbjct: 430 PGDYVVHISHGIGKYLGVETIEVAGVHRDYLHIQYGGDD-KLFVPTDQVS 478 >gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1164 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ + G+ ++ I + + + +PV + + Sbjct: 491 GDYVVHSVHGIGRFLGIETINIQGIHRDYVTIQYQQSD-RISLPVEQLESL 540 >gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453] gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453] Length = 1175 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I Sbjct: 490 KVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLI 541 >gi|315635838|ref|ZP_07891100.1| transcription-repair coupling factor [Arcobacter butzleri JV22] gi|315479817|gb|EFU70488.1| transcription-repair coupling factor [Arcobacter butzleri JV22] Length = 995 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA- 75 + +V+ +G+G I+ V G K +F +I + + L VPV I R +++ Sbjct: 365 NDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGED-KLLVPVENLDLID-RYVADGS 422 Query: 76 --HFVERA----LKLVRGKARVK 92 V++ ++ K + K Sbjct: 423 SYAVVDKLGKGSFAKLKEKVKDK 445 >gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279] gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279] Length = 987 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+++++P HG+G ++ +EV G + ++ V+ + + + +PV + Sbjct: 332 VGDYLIHPEHGIGQYLGLETREVLGAQRDYLVLRYA-GEARMYLPVEQ 378 >gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] Length = 1197 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G + + + +K ++ ++ + + L +P + I Sbjct: 532 KTGDYVVHVNHGIGRYDGVVQLTIGDVKRDYLLVKYAGED-KLYIPTDQVEMI 583 >gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM 7454] gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM 7454] Length = 1163 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +++V+ +G+G I + EV K ++FVI + + + VPV + + Sbjct: 498 EIDDYVVHENNGIGIYKGISQIEVNNTKKDYFVIEYQGND-KVFVPVDQMDLV 549 >gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300] gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300] Length = 1041 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G G+++++P HG+G ++ + V G+ ++ + + + L VP+ + +R+ Sbjct: 365 GLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEY-RGGARLAVPIEQLPV--LRRH 421 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 L + W+ RA+E K Sbjct: 422 PGTTDDPPVLSSF------DKKDWA-RAKEKARK 448 >gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] Length = 1175 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I Sbjct: 490 KVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLI 541 >gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC 12261] gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC 12261] Length = 1167 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] Length = 1175 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K EV G ++ +I + + L VP + I Sbjct: 507 NVGDYVVHENHGIGKYLGVKTLEVQGHNQDYLLIKYADED-KLYVPTDQVNLI 558 >gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC 43531] gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC 43531] Length = 1097 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ +HG+G ++ EVAG+ ++ I + D L VP + Sbjct: 430 PGDYVVHVSHGIGKYLGVETIEVAGVHRDYLHIQYGGDD-KLFVPTDQV 477 >gi|330836643|ref|YP_004411284.1| transcription-repair coupling factor [Spirochaeta coccoides DSM 17374] gi|329748546|gb|AEC01902.1| transcription-repair coupling factor [Spirochaeta coccoides DSM 17374] Length = 1092 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ +GVG +I V+G + ++ I + D+ L VP+ +A I R + A Sbjct: 432 GDYVVHANYGVGQFIKIDRVGVSGRERDYIKIRYASDE-NLYVPIEQANLIQ-RYIGSAG 489 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109 AL + G+ + RA++ ++ + Sbjct: 490 GSP-ALDHLGGQGWEHK---KARARKSAEQLAT 518 >gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] Length = 1175 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I Sbjct: 490 KVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLI 541 >gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae GA47901] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC 700669] gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA] gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae ATCC 700669] gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae INV104] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC3059-06] gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC3059-06] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1873-00] gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC1873-00] gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae GA47368] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae GA41317] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334] gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597] gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597] Length = 1168 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 491 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 537 >gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae SP23-BS72] gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae SP23-BS72] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae SP6-BS73] gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae SP6-BS73] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae SP3-BS71] gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae SP3-BS71] gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae OXC141] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS69] gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI 1974] gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI 1974M2] gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS69] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4] gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae TIGR4] gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa E681] gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa E681] Length = 1175 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 15/81 (18%) Query: 1 MTFQQKRDAMRQG--------------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46 M Q++R A +QG + G+++V+ HG+G I EV G+ ++ Sbjct: 462 MFSQKQRKARKQGRHVDNAERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYM 521 Query: 47 VIAFDKDKMCLKVPVGKAIDI 67 + + L VP+ + I Sbjct: 522 HVLYAGGD-KLSVPIEQIDLI 541 >gi|319934923|ref|ZP_08009368.1| transcription-repair coupling factor [Coprobacillus sp. 29_1] gi|319810300|gb|EFW06662.1| transcription-repair coupling factor [Coprobacillus sp. 29_1] Length = 1141 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G IK E G K ++ IA+ + L +PV + RK + Sbjct: 477 NIGDYVVHDTHGIGQYMGIKTLETKGAKKDYLYIAYKGND-TLYIPVENFKLV--RKYAS 533 Query: 75 AHF 77 Sbjct: 534 RDG 536 >gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] Length = 1173 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G IK+ EV G K ++ + +D + L VPV + + Sbjct: 505 KPGDFVVHVNHGIGIYKGIKQLEVQGHKKDYLELIYDSED-KLYVPVEQLDMV 556 >gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031] gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585] gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae SP19-BS75] gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae CGSP14] gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455] gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae SP-BS293] gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS292] gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397] gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457] gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458] gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae SP19-BS75] gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae CGSP14] gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor [Streptococcus pneumoniae INV200] gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455] gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae SP14-BS292] gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae SP-BS293] gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458] gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457] gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564] gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54] gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae SP18-BS74] gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae 670-6B] gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae SP18-BS74] gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae 670-6B] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae GA41301] Length = 1171 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae GA17545] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum JL354] Length = 1163 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + Q G+ +V+ HG+G ++ V K + ++ + L +PV + Sbjct: 479 SELQALSRGDLVVHTEHGIGKYLGLEPVTVGKSKHDCVMLQYKGGD-KLYIPVENLEVLS 537 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R S V L + G+A W +R + +I E+ +L RT +Q Sbjct: 538 -RYGSSEDAV--MLDRLGGEA------WQKRRAQLRERIR--------EIASELMRTAAQ 580 Query: 129 PEK 131 Sbjct: 581 RAL 583 >gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae TCH8431/19A] gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae TCH8431/19A] gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae GA04375] Length = 1169 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae SP9-BS68] gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195] gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae SP9-BS68] gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195] gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae GA17570] Length = 1174 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus Kuenenia stuttgartiensis] Length = 1092 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G++IV+ HG+G I+ E G K E+ V+ +D+ + VP K + Sbjct: 429 KKGDYIVHVTHGIGRFLGIEIIEDDGCKREYLVLEYDEGT-KIYVPATKIELV 480 >gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM 44985] gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM 44985] Length = 1214 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+++V+ HG+G E+ E+ V G + E+ V+ + K L VP+ + Sbjct: 513 ALKAGDYVVHDQHGIGRFVELVERTVGGARREYVVVEYASSKRGHPPDRLYVPMDALDQL 572 >gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139] gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139] Length = 1209 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+ IV+ HGVG E+ ++ V G E+ VI + K L VPV + Sbjct: 525 KPGDLIVHEQHGVGRYVEMVQRAVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQV 582 >gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612] gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612] Length = 1140 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ + + + VI + L +PV + + Sbjct: 475 VGDYVVHDVHGIGIYLGIEQLTIDNVTKDLMVIEYA-GDARLYIPVEQMDSV 525 >gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium kansasii ATCC 12478] Length = 1238 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K Sbjct: 516 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASSKRGGQNS 575 Query: 56 --CLKVPVGKAIDI 67 L VP+ + Sbjct: 576 TDKLYVPMDSLDQL 589 >gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] Length = 1161 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ EV GM ++ I + + VPV Sbjct: 487 VGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGD-TISVPVDHLD 535 >gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis CV56] Length = 1161 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ EV GM ++ I + + VPV Sbjct: 487 VGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGD-TISVPVDHLD 535 >gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris MG1363] gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis subsp. cremoris MG1363] gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 1180 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ EV GM ++ I + + VPV Sbjct: 505 VGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGD-TISVPVDHLD 553 >gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] Length = 1161 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ EV GM ++ I + + VPV Sbjct: 487 VGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGD-TISVPVDHLD 535 >gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] Length = 1162 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ EV GM ++ I + + VPV Sbjct: 487 VGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGD-TISVPVDHLD 535 >gi|39935729|ref|NP_948005.1| transcription-repair coupling factor [Rhodopseudomonas palustris CGA009] gi|39649582|emb|CAE28104.1| transcription repair coupling factor [Rhodopseudomonas palustris CGA009] Length = 1172 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 12/104 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 TG+ +V+ HG+G ++ EV G + + + + L +PV + R S+ Sbjct: 501 STGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYA-NDTKLFLPVENIELLS-RYGSD 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI +A Sbjct: 559 GTSVE--LDKLGG------SGWQARKAKLKNRIRQIAGELIKVA 594 >gi|291458882|ref|ZP_06598272.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418136|gb|EFE91855.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 175 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIA-FDKDKMCLKVPVGKAIDIGM 69 F++G ++VY GV IT I + G+ + ++++ K + + PV + I M Sbjct: 1 MFQSGTYVVYGCKGVHKITGITTLNLEGIPKDKNYYILEPLKKAQAAIYAPVEEMR-IRM 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD--AKINSGDLIAIAEVVRDLHRTDS 127 R + E L+ + + ++ + RA+E I S + + V++ L + Sbjct: 60 RPVMSREEAEHFLQSM--GLILPLSIRNPRAREEACRECIRSCEPDELLRVIKTLQHRKT 117 Query: 128 QPEK 131 + + Sbjct: 118 ERAR 121 >gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] Length = 1167 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ EV+G+ ++ I + + +PV + Sbjct: 495 GDYVVHNIHGIGRYLGIETIEVSGVHRDYLTIQYQNAD-RISIPVDQIN 542 >gi|192291316|ref|YP_001991921.1| transcription-repair coupling factor [Rhodopseudomonas palustris TIE-1] gi|192285065|gb|ACF01446.1| transcription-repair coupling factor [Rhodopseudomonas palustris TIE-1] Length = 1172 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 12/104 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 TG+ +V+ HG+G ++ EV G + + + + L +PV + R S+ Sbjct: 501 STGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYA-NDTKLFLPVENIELLS-RYGSD 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI +A Sbjct: 559 GTSVE--LDKLGG------SGWQARKAKLKNRIRQIAGELIKVA 594 >gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1171 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 24/43 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G++IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 493 NPGDYIVHKNHGIGQFLKIEKINITGESRDYLVIRYLDGKISV 535 >gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219] gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219] Length = 1142 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q +++V+ +GVG I+ +E+ +K +F I K L VP+ + + RK Sbjct: 469 QELEPKDYVVHANYGVGQYMGIETKEINHIKRDFLRI-IYKANSELLVPLEQFRLV--RK 525 Query: 72 LSEAHFV 78 + Sbjct: 526 FVSREGI 532 >gi|163853560|ref|YP_001641603.1| transcription-repair coupling factor [Methylobacterium extorquens PA1] gi|163665165|gb|ABY32532.1| transcription-repair coupling factor [Methylobacterium extorquens PA1] Length = 1196 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 522 QALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 576 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 + E AL + G A W R AK+ +GDLI IA Sbjct: 577 RYGSEDSEVALDRLGGGA------WQAR----KAKMKRRILEMAGDLIKIA 617 >gi|218532420|ref|YP_002423236.1| transcription-repair coupling factor [Methylobacterium chloromethanicum CM4] gi|218524723|gb|ACK85308.1| transcription-repair coupling factor [Methylobacterium chloromethanicum CM4] Length = 1196 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 522 QALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 576 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 + E AL + G A W R AK+ +GDLI IA Sbjct: 577 RYGSEDSEVALDRLGGGA------WQAR----KAKMKRRILEMAGDLIKIA 617 >gi|240140979|ref|YP_002965459.1| transcription repair coupling protein, ATP-dependent helicase [Methylobacterium extorquens AM1] gi|240010956|gb|ACS42182.1| transcription repair coupling protein, ATP-dependent helicase [Methylobacterium extorquens AM1] Length = 1196 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 522 QALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 576 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 + E AL + G A W R AK+ +GDLI IA Sbjct: 577 RYGSEDSEVALDRLGGGA------WQAR----KAKMKRRILEMAGDLIKIA 617 >gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] Length = 1186 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+ +V+ HG+G I+ +V + ++ I++ + L VPV + + Sbjct: 501 KTGDWVVHINHGIGKYLGIETLQVGDVHKDYLHISYAGND-KLYVPVDQIDQV 552 >gi|254563490|ref|YP_003070585.1| transcription repair coupling protein, ATP-dependent helicase [Methylobacterium extorquens DM4] gi|254270768|emb|CAX26773.1| transcription repair coupling protein, ATP-dependent helicase [Methylobacterium extorquens DM4] Length = 1196 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 522 QALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 576 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 + E AL + G A W R AK+ +GDLI IA Sbjct: 577 RYGSEDSEVALDRLGGGA------WQAR----KAKMKRRILEMAGDLIKIA 617 >gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM 20544] gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM 20544] Length = 1129 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + G+++V+ +HG+G ++ +V G+ ++ I + D L VP + Sbjct: 430 KPGDYVVHESHGIGKYLGVETLDVGGIHKDYLHIQYAGDD-KLFVPTDQV 478 >gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C] gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C] Length = 1179 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 488 MPTRRRKSIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGD 547 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 548 --RLYIPTDQLEQV 559 >gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1166 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQISSL 540 >gi|218295465|ref|ZP_03496278.1| transcription factor CarD [Thermus aquaticus Y51MC23] gi|218244097|gb|EED10623.1| transcription factor CarD [Thermus aquaticus Y51MC23] Length = 699 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 16/118 (13%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+ +++P HG+G ++ +EV G++ ++ V+ + + L +PV + R Sbjct: 39 ALSPGDFLIHPEHGIGQYLGLETREVLGVRRDYLVLRYRGEG-RLYLPVEGLPLLK-RHP 96 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L +G+ W +RA+E K D+ +A R L + Sbjct: 97 GTTDDPPELSSLGKGE-------W-QRAKEKARK----DVEELA--ARLLVLHAKRKA 140 >gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2083] gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium HTCC2083] Length = 1150 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 471 TETQSLNPGDLVVHVDHGIGRYQGLEVITAAGAAHECIMLDYAENA-RLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + E L + G A + K+ R +E K+ + AE R L R Sbjct: 527 ---LLSKYGHEEGLLDRLGGGAWQSKKAKLKERIREMADKL----IRVAAE--RALRR 575 >gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] Length = 1171 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +R Q +TG+++V+ HG+G IK +VAG ++ + + + L VPV Sbjct: 485 TNAERIKSYQELKTGDYVVHIHHGIGRYHGIKTIDVAGNHQDYLHLIYAGEDS-LYVPVD 543 Query: 63 KAIDI 67 + I Sbjct: 544 QIDLI 548 >gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] Length = 1167 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQISSL 540 >gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1] gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus pyogenes SSI-1] Length = 1167 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQISSL 540 >gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC 10712] Length = 1221 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 531 MPAKRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKRGQPGD 590 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 591 --RLYIPTDQLEQV 602 >gi|92117582|ref|YP_577311.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14] gi|91800476|gb|ABE62851.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14] Length = 1173 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G T ++ EV G + + + ++ L +PV + R S+ Sbjct: 504 GDLVVHVEHGIGRFTGLQTLEVGGAPHDCLELRYA-NETKLFLPVENIELLS-RYGSDHA 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIAEVVRDLHRTDSQPEKS 132 VE L + G + W R + +I G+LI IA R LH P +S Sbjct: 562 NVE--LDRLGG------SGWQARKAKLKNRIREIAGELIKIAA-ARHLHEAPKMPVQS 610 >gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] Length = 1139 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 462 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQISSL 512 >gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1206 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 516 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 575 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 576 --RLYIPTDQLEQI 587 >gi|188583862|ref|YP_001927307.1| transcription-repair coupling factor [Methylobacterium populi BJ001] gi|179347360|gb|ACB82772.1| transcription-repair coupling factor [Methylobacterium populi BJ001] Length = 1200 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 27/161 (16%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 526 QALQPGDLVVHADHGIGRFVGLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 580 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVVRDLHRTDSQPE 130 + E AL + G A W R AK+ ++ +A E+++ +P Sbjct: 581 RYGSEDSEVALDRLGGGA------WQAR----KAKMKR-RILEMAGELIKVAAARFVKPA 629 Query: 131 KSYSERQLYESALNRMVREIAA--VNSISEPEAINLIEVNL 169 S A + E AA +E +A N I+ L Sbjct: 630 PSL-------KAPEGLYEEFAARFAFQETEDQA-NAIDAVL 662 >gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848 str. F0332] gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848 str. F0332] Length = 1194 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFDKDKM-- 55 M ++K Q + G+++V+ HGVG ++ ++ + + E+ V+ + + Sbjct: 495 MPARRKNAVDLQALKPGDYVVHEHHGVGRFVKMAKRSIGASRETQREYLVLEYASTRRGA 554 Query: 56 ---CLKVPVGKAIDI 67 L VP + Sbjct: 555 PPDQLWVPTDSLDQV 569 >gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1187 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 497 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 556 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 557 --RLYIPTDQLEQI 568 >gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei] Length = 1045 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I +D L +PV + + Sbjct: 498 KPGDYVVHVNHGIGEYVGMETLEVDGVHQDYITI-LYRDNGKLFIPVTQLDMV 549 >gi|295104237|emb|CBL01781.1| transcription-repair coupling factor [Faecalibacterium prausnitzii SL3/3] Length = 1171 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +HG+G I+ EV G ++ + + + L VPV + + R + Sbjct: 489 KPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV-LYVPVTQLDLLS-RYTAP 546 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQ 101 + L + G T W R RA+ Sbjct: 547 GDEEKVKLAKLGG------TEWQRTRAK 568 >gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus YK9] gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus YK9] Length = 1177 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I E+ G+ ++ + + L VP+ + I Sbjct: 489 KVGDYVVHQNHGIGKYLGIGTLEIGGIHKDYMHVMYAGGD-KLSVPIEQIDMI 540 >gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium HTCC2255] gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium HTCC2255] Length = 1151 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HGVG ++ + AG + ++ + + L +PV Sbjct: 475 TEASSLSVGDLVVHVDHGVGRYRGLETVKAAGAPHDCLLLEYANND-RLYLPVENVE--- 530 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E K+ Sbjct: 531 ---LLSRYGHETGLLDRLGGSAWQAKKAKLKERIREMADKL 568 >gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5] gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5] Length = 1167 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIQGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149] gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149] Length = 1229 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+H+V+ HG+G E+ ++ V G E+ VI + K Sbjct: 531 MPSRRRNTIDPLELKAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGD 590 Query: 56 CLKVPVGKAIDI 67 L VP + + Sbjct: 591 RLFVPTDQLDQL 602 >gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC 49296] gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC 49296] Length = 1167 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G I+ E+ G+ ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIQGIHRDYVSVQYQNGD-QISIPVEQIQ 539 >gi|86749967|ref|YP_486463.1| transcription-repair coupling factor [Rhodopseudomonas palustris HaA2] gi|86572995|gb|ABD07552.1| transcription-repair coupling factor [Rhodopseudomonas palustris HaA2] Length = 1171 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ EV G + + + + L +PV + R S+ Sbjct: 503 GDIVVHVEHGIGRFIGLQTLEVGGAPHDCVELHYA-NDTKLFLPVENIELLS-RYGSDGT 560 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G W R + +I G+LI +A Sbjct: 561 SVE--LDRLGGGG------WQARKAKLKNRIRQIAGELIKVA 594 >gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] Length = 1182 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+ +V+ HG+G I++ V G++ ++F I + + L VP+ + Sbjct: 502 KPGDFVVHLYHGIGKFIGIEKIGVDGIEKDYFAIKYAGED-KLYVPLDQIQ 551 >gi|291545188|emb|CBL18297.1| transcription-repair coupling factor [Ruminococcus sp. 18P13] Length = 1156 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G I++ E+ G+ ++ I + + L VPV + + R + Sbjct: 490 GDLVVHALHGIGRFVGIRKLELEGVTKDYITIQYAGKDV-LYVPVTQLDMVS-RYIGTRD 547 Query: 77 FVERALKLVRGKARVKRTMWSRRA 100 L + K +RA Sbjct: 548 DDHVKLHKLSSVEWQKTRNNVKRA 571 >gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] Length = 1179 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV + ++ +I + +D + VPV + + Sbjct: 501 KPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINY-RDNAQIYVPVTQLNLV 552 >gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1176 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 546 --RLYIPTDQLEQI 557 >gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270] gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270] Length = 1168 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 13/121 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +V+ HG+G I++ EV G+ + +I + + L +P + ++K Sbjct: 504 NVGDFVVHENHGIGEYRGIEQIEVDGIVKDHILILYKGND-KLYIPTDQMNL--IQKYIG 560 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + +K RA++ +I I + ++ + D ++S Sbjct: 561 KDGYKPKLNKLGSNDWIKTKT---RAKKVLDEIA----IDLVQLY---AKRDKIRGFAFS 610 Query: 135 E 135 E Sbjct: 611 E 611 >gi|160944870|ref|ZP_02092097.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii M21/2] gi|158444054|gb|EDP21058.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii M21/2] Length = 1171 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +HG+G I+ EV G ++ + + + L VPV + + R + Sbjct: 489 KPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV-LYVPVTQLDLLS-RYTAP 546 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQ 101 + L + G T W R RA+ Sbjct: 547 GDEEKVKLAKLGG------TEWQRTRAK 568 >gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035] gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035] Length = 1150 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E V+ + + L +PV Sbjct: 470 TEAQSLSVGDLVVHVDHGIGRYLGLEVVTAAGAAHECLVLEYAESS-KLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHEEGLLDRLGGGAWQAKKARLKERIREMADRL 563 >gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1] gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1] Length = 1187 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 497 MPTRRRKAIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGD 556 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 557 --RLYIPTDQLEQV 568 >gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus ATCC 23263] gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus ATCC 23263] Length = 1144 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 K+ G+++V+ HG+G I++ + + VIA+ D L +PV + Sbjct: 467 KKIETFTSLSAGDYVVHDIHGIGVYQGIEKMTIGETTKDMIVIAYQGDD-RLYLPVDQMG 525 Query: 66 DI 67 I Sbjct: 526 SI 527 >gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp. sakei 23K] gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei subsp. sakei 23K] Length = 1173 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I +D L +PV + + Sbjct: 498 KPGDYVVHVNHGIGEYVGMETLEVDGVHQDYITI-LYRDNGKLFIPVTQLDMV 549 >gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36] gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36] Length = 1162 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ AG E ++ + + L +PV Sbjct: 479 TETQSLSPGDLVVHVDHGVGRYLGMEVVTAAGAAHECLLLEYAESS-KLYLPVENIE--- 534 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E K+ Sbjct: 535 ---LLSRYGHDEGLLDKLGGGAWQSKKAKLKERIREMADKL 572 >gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str. Jelinkova 176] gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str. Jelinkova 176] Length = 1166 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ HG+G I+ ++ G+ ++ I + + +PV + + K A Sbjct: 491 GDYVVHNVHGIGRFLGIETIKLQGIHRDYVTIQYQNSD-RISLPVEQIES--LSKYVSAD 547 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 E + + R Q+ K+ S + IA+ DL R ++ + Sbjct: 548 GKEPKINKLNDG----------RFQKTKQKV-SKQVEDIAD---DLLRLYAERSQ 588 >gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1 str. 28L] gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1 str. 28L] Length = 1095 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 ++G++IV+ AHG+G +K E+ G+ ++ I + + L VP + I R + Sbjct: 426 KSGDYIVHHAHGIGRYVGLKTIEIDGVHRDYLEIHYAGSDI-LYVPTDQLRLIQ-RYIGN 483 Query: 75 AHFVERA 81 + + Sbjct: 484 EGEIPKL 490 >gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1166 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +PV + + Sbjct: 491 GDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPVDQISSL 540 >gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B] gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120] gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120] Length = 770 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645] gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017] gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027] gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis AR01/DG] gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6] gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1] gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8] gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3] gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2] gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031] gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000] gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341] gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] Length = 1131 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G T I++ V G+K ++ I + L VP+ + + Sbjct: 494 KIGDYVVHENSGIGRYTGIEQISVNGIKKDYLKIIYQGGD-NLYVPIDQMDKV 545 >gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV + ++ +I + +D + VPV + + Sbjct: 501 KPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINY-RDNAQIYVPVTQLNLV 552 >gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] Length = 1189 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 560 >gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11] gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] Length = 1178 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV + ++ +I + +D + VPV + + Sbjct: 500 KPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINY-RDNAQIYVPVTQLNLV 551 >gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G + IK EV + ++ +I + +D + VPV + + Sbjct: 501 KPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINY-RDNAQIYVPVTQLNLV 552 >gi|285808213|gb|ADC35747.1| transcription-repair coupling factor [uncultured bacterium 293] Length = 1139 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + + G+ +V+ HG+G ++ +V G +EF V+A+ LKVPV Sbjct: 466 RDLKIGDLVVHQDHGIGRFEGLQTLDVGGTSVEFMVLAYQGGD-KLKVPVE 515 >gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188] gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] Length = 1179 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|237734333|ref|ZP_04564814.1| transcription-repair coupling factor [Mollicutes bacterium D7] gi|229382563|gb|EEO32654.1| transcription-repair coupling factor [Coprobacillus sp. D7] Length = 1144 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HG+G IK EV G ++ +A+ D L +PV + +RK Sbjct: 477 QELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVAYAGDD-TLYIPVEQFKM--IRK 533 Query: 72 LSEAHF-VERALKLVRGKARVKRTMWSRRAQ--EYDAKI 107 S V + KL G ++ ++T R++ + K+ Sbjct: 534 YSSNEGKVPKINKL--GGSQWQKTKAKARSKVDDIADKL 570 >gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium marinum M] gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium marinum M] Length = 1222 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K Sbjct: 502 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGSD 561 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 562 KLYVPMDSLDQL 573 >gi|167755583|ref|ZP_02427710.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402] gi|167704522|gb|EDS19101.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402] Length = 1144 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HG+G IK EV G ++ +A+ D L +PV + +RK Sbjct: 477 QELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVAYAGDD-TLYIPVEQFKM--IRK 533 Query: 72 LSEAHF-VERALKLVRGKARVKRTMWSRRAQ--EYDAKI 107 S V + KL G ++ ++T R++ + K+ Sbjct: 534 YSSNEGKVPKINKL--GGSQWQKTKAKARSKVDDIADKL 570 >gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1] gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1] Length = 1162 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ AG E ++ + + L +PV Sbjct: 479 TETQSLSPGDLVVHVDHGVGRYLGMEVVTAAGAAHECLLLEYAESS-KLYLPVENIE--- 534 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E K+ Sbjct: 535 ---LLSRYGHDEGLLDKLGGGAWQSKKAKLKERIREMADKL 572 >gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC 3773] Length = 1176 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ V G K ++ IA+ K+ + +PV + I Sbjct: 495 NVGDYVVHVNHGIGRYEGLQTMTVDGGKQDYLTIAYQKNA-KIFIPVTQLNLI 546 >gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex HEL-45] gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex HEL-45] Length = 1156 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E V+ + + + L +PV Sbjct: 471 TEAQSLSPGDLVVHVDHGIGRYHGMEVVTAAGAAHECLVLEYAE-QSKLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E K+ Sbjct: 527 ---LLSRYGHDEGLLDKLGGGAWQSKKAKLKERIREMADKL 564 >gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] Length = 1094 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ +HG+G ++ EVAG+ ++ I + D L VP + Sbjct: 430 PGDYVVHVSHGIGKYLGVETLEVAGVHRDYLHIQYGGDD-KLFVPTDQV 477 >gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans SRS30216] gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans SRS30216] Length = 1193 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 R G+ +V+ HGVG E+ ++ + G E+ V+ + K L VP + Sbjct: 505 RPGDFVVHEQHGVGRFVEMVQRTIQGATREYLVLEYAPSKRGQPGDRLFVPTDTLDQV 562 >gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399] gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399] Length = 1094 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ +HG+G ++ EVAG+ ++ I + D L VP + Sbjct: 430 PGDYVVHVSHGIGKYLGVETLEVAGVHRDYLHIQYGGDD-KLFVPTDQV 477 >gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii DSM 271] gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii DSM 271] Length = 1120 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 26/165 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+HIV+ +G+G ++ +V + E ++ +DK L V +IG+ LS+ Sbjct: 414 NVGDHIVHEDYGIGIFKALETIQVGNSEQECVLVEYDKGD-QLYV---NVQNIGL--LSK 467 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVVRDLHRTDSQPEKSY 133 E +L + +R+ + W R K+ L IA E+++ + P ++ Sbjct: 468 YSAAEGSLPSL---SRLGSSKWKAR----KDKVKK-RLRDIASELIKLYAKRKMTPGFAF 519 Query: 134 SERQLYESALNRMVREIAAVNSISEP----EAINLIEVNLSSKSS 174 + + RE A E +AI ++ ++ S Sbjct: 520 GQ-------DSIFQREFEASFIFDETPDQLKAIEEVKKDMQSPFP 557 >gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] Length = 1174 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 19/124 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +V+ AHG+G I+ V +K ++ I + + L +P + + + + Sbjct: 505 NIGDFVVHQAHGIGQYIGIENLSVGEVKRDYLKIRYQEGDF-LYIPTNQLDLLQ-KYIGS 562 Query: 75 AHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 R ++ T W++ R +E ++ AE+++ + S Sbjct: 563 EGKTPRV-------NKLGGTEWAKTKSRVKESLQQLA-------AELIKLYAQRQSAKGH 608 Query: 132 SYSE 135 S+SE Sbjct: 609 SFSE 612 >gi|89054813|ref|YP_510264.1| transcription-repair coupling factor [Jannaschia sp. CCS1] gi|88864362|gb|ABD55239.1| transcription-repair coupling factor [Jannaschia sp. CCS1] Length = 1153 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 13/117 (11%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ IV+ HGVG ++ AG E + + L +PV Sbjct: 479 TEAQSLSPGDLIVHVDHGVGRYKGLETVTAAGAPHECIALEYAGGD-RLFLPVENIEL-- 535 Query: 69 MRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 LS + L + G A + K+ R + K+ + AE R+L + Sbjct: 536 ---LSRYGHDDGLLDKLGGGAWQAKKARLKERIRLIADKL----IRIAAE--RELRK 583 >gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus XylebKG-1] gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus XylebKG-1] Length = 1177 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 547 --RLYIPTDQLEQV 558 >gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB 1003] gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB 1003] Length = 1148 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 22/124 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ G + ++ + L +PV Sbjct: 466 TEAQSLSPGDLVVHVDHGVGRYKGLETVTALGAPHDCVLLEYAGGD-RLYLPVENIE--- 521 Query: 69 MRKLSEAHFVER-ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L + E L + G A W Q AK+ + IA+ L R + Sbjct: 522 ---LLSRYGHEEGLLDKLGGGA------W----QAKKAKLKE-RIRQIAD---RLMRIAA 564 Query: 128 QPEK 131 + Sbjct: 565 ERLL 568 >gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium ulcerans Agy99] gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium ulcerans Agy99] Length = 1222 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK-----DKM 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + Sbjct: 502 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASARRGGGSD 561 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 562 KLYVPMDSLDQL 573 >gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM 2228] Length = 1160 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 ++G+++V+ HG+G +K E+ ++ V+ + + L VP K + Sbjct: 498 KSGDYVVHENHGIGKYLGVKTLEIQNKHKDYLVLKYAGED-KLYVPTEKIDLV 549 >gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT 5713] Length = 908 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 27/123 (21%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G +K EV G ++ I +D L +PV Sbjct: 231 KKGDYVVHVNHGIGRYIGMKTLEVGGHHHDYMTI-LYQDDAKLFIPVS------------ 277 Query: 75 AHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDS 127 +++ K V +++ R W++ + K + IA+ + DL+ + ++ Sbjct: 278 --QLDKIQKYVSSESKTPRVNKLGGSEWAKTKRRVANK-----IEDIADELVDLYAKREA 330 Query: 128 QPE 130 + Sbjct: 331 EKG 333 >gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] Length = 1170 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G ++ E++G+ ++ I + + +PV + Sbjct: 495 GDYVVHQVHGIGQYLGLETIEISGVHRDYVSIQYQNGD-RISIPVDQIQ 542 >gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus AHT2] gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus AHT2] Length = 1179 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 GE +V+ HG+G +K + G+ ++ I + D L +PV + +G Sbjct: 493 NPGELVVHRRHGIGIYQGLKPIAINGITNDYLTIRYRGDD-KLFIPVDQINSVG 545 >gi|257460753|ref|ZP_05625854.1| transcription-repair-coupling factor [Campylobacter gracilis RM3268] gi|257442084|gb|EEV17226.1| transcription-repair-coupling factor [Campylobacter gracilis RM3268] Length = 986 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 11/116 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +V+ HG+ ++ EV G EF + ++ L +PV I R ++ Sbjct: 348 NVGDFVVHEDHGIAKFNGLELIEVMGHSKEFVSLLYEGGD-KLLLPVEYLNKID-RYVAS 405 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA---EVVRDLHRTDS 127 V + R + R +E I S ++IA+A E+VR L + Sbjct: 406 GGAVS-----LDHLGRASFSKIKERVREKLFAIAS-NIIALAAKRELVRGLVIKNE 455 >gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Streptococcus pyogenes M49 591] Length = 1167 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum L-1] gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum L-1] Length = 1157 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 19/125 (15%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + + KR F G+ +V+ HG+G + + VA + + + Sbjct: 469 LVRRAKRKKNADAFLQELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDCVALEYAGG 528 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GD 111 L VPV + R S++ V L + G+A W RR +I G+ Sbjct: 529 D-KLYVPVENLEVLS-RYGSDSEGVS--LDKLGGEA------WQRRKARMKERIREIAGE 578 Query: 112 LIAIA 116 L+ A Sbjct: 579 LLKTA 583 >gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] Length = 1184 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 494 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKRGQPGD 553 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 554 --RLYIPTDQLEQV 565 >gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062] gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062] Length = 1162 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HG+G +K E G + + + L +PV + Sbjct: 488 TEASALSPGDLVVHVEHGIGRFIGLKTIEAVGAPHDCLELQYAGSD-KLYLPVENIELL- 545 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R SE V+ L + G A W R AK+ ++ IA+ L + ++ Sbjct: 546 TRYGSEDQEVQ--LDKLGGGA------WQAR----KAKMKK-RILEIAD---GLIKIAAE 589 Query: 129 PEK 131 Sbjct: 590 RAL 592 >gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] Length = 1139 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ ++ G+ ++ I + + +P+ + + Sbjct: 462 VGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSD-RISLPIDQIGSL 512 >gi|225574874|ref|ZP_03783484.1| hypothetical protein RUMHYD_02952 [Blautia hydrogenotrophica DSM 10507] gi|225037897|gb|EEG48143.1| hypothetical protein RUMHYD_02952 [Blautia hydrogenotrophica DSM 10507] Length = 172 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 20/167 (11%) Query: 13 GFRTGEHIVYPAHGVGTITEIKE-QEVAGMK--LEFFVIAFDKDKMCLKVPVGKAIDIGM 69 F G IVY GV + EI + G ++ ++ + + +PV D+ M Sbjct: 1 MFEKGACIVYGNTGVCRVEEIGPLSNIRGSHPGKIYYKLSPIRTGGTIYIPVDS--DMFM 58 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQE----YDAKINSGDLIAIAEVV------ 119 R + + + R +R SR + Y A + + + ++ Sbjct: 59 RPVMTREEADAL--IWRMPKICERVCSSRDQRVLNEHYKASLRTHSCEELVRLIKSVYVK 116 Query: 120 -RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 R L + + K+ E + + A + E+ I E I Sbjct: 117 NRRLIKNGKKAGKTDLEYR--KKAEMLLYEELGVALGIPFEEVKEYI 161 >gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1177 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 547 --RLYIPTDQLEQV 558 >gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 11379] Length = 1177 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 547 --RLYIPTDQLEQV 558 >gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces griseoaurantiacus M045] gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces griseoaurantiacus M045] Length = 1176 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 546 --RLYIPTDQLEQI 557 >gi|154147968|ref|YP_001406057.1| transcription-repair coupling factor [Campylobacter hominis ATCC BAA-381] gi|153803977|gb|ABS50984.1| transcription-repair coupling factor [Campylobacter hominis ATCC BAA-381] Length = 986 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K + G+ +V+ +GV ++ EV G K EF V+ + L +PV Sbjct: 339 RKSSLAVDELQIGDFVVHENYGVAKFAGLELIEVLGSKSEFVVLEYFGGD-KLLLPVQNL 397 Query: 65 IDIGMRKLSEA-HFVERA----LKLVRGKARVK 92 I R ++ +++ ++ K R K Sbjct: 398 NLID-RYIASGVATLDKLGKTGFAKIKEKVREK 429 >gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023] Length = 899 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378] Length = 899 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707] gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707] Length = 1225 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ G+ +V+ HG+G E+ E+ + G + E+ VI + K Sbjct: 514 MPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAASKRGHPGD 573 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 574 RLFVPMESLDQL 585 >gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78] gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78] Length = 1178 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 487 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 547 --RLYIPTDQLEQI 558 >gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24] gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24] gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24] Length = 1184 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 494 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 553 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 554 --RLYIPTDQLEQI 565 >gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC 13950] Length = 1200 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K Sbjct: 484 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASSKNRGGAA 543 Query: 56 ----CLKVPVGKAIDI 67 L VP+ + Sbjct: 544 KNTDKLYVPMDSLDQL 559 >gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S] gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S] Length = 1228 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ G+ +V+ HG+G E+ E+ + G + E+ VI + K Sbjct: 517 MPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAASKRGHPGD 576 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 577 RLFVPMESLDQL 588 >gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG] gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF] Length = 1178 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 487 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 547 --RLYIPTDQLEQI 558 >gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius 653-L] gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius 653-L] Length = 1133 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ GVG T I++ V G+K ++ I + L VP+ + + Sbjct: 491 MELKLGDYVVHENSGVGKYTGIEQVSVNGIKRDYIKIIYKGGD-NLYVPIDQMDKV 545 >gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor A3(2)] gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces coelicolor A3(2)] Length = 1184 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 494 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 553 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 554 --RLYIPTDQLEQI 565 >gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes] Length = 1190 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 513 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 564 >gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT] gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT] Length = 1148 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + GE +V+ HGV + + GM E+ ++ + L VP + + R + Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPTDQMDRVN-RFIGS 542 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 R+ W +RA+E S A R+L ++ E + Sbjct: 543 GDEPPSL-------HRLGTQEW-QRAKEK----ASESAEETA---RELLEIYAKRELASG 587 >gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] Length = 1168 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 502 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 553 >gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] Length = 1168 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 502 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 553 >gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] Length = 1162 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 496 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 547 >gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp. HTCC2649] gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp. HTCC2649] Length = 1204 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+ +V+ HGVG E+ ++ V G E+ V+ + Sbjct: 504 MPSRRRNQVDPLQLKPGDFVVHEQHGVGKFVEMMQRTVQGATREYLVLEYAPGTRGKHSQ 563 Query: 56 --CLKVPVGKAIDI 67 L VP + I Sbjct: 564 PDRLFVPTDQLDQI 577 >gi|295101119|emb|CBK98664.1| transcription-repair coupling factor [Faecalibacterium prausnitzii L2-6] Length = 1161 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +HG+G I+ EV G ++ I + + L VPV + + R + Sbjct: 488 KPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDV-LYVPVTQLDLLS-RYTAP 545 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQ 101 + L + G T W R RA+ Sbjct: 546 GDEEKVKLAKLGG------TEWQRTRAK 567 >gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] Length = 1168 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 502 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 553 >gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] Length = 1154 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%) Query: 6 KRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 KR + R+G + GE +V+ HGV + + GM E+ ++ + L VP Sbjct: 478 KRPSARKGVVLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPT 536 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQE 102 + + R + R+ W +RA+E Sbjct: 537 DQMDRVN-RFIGSGDEPPSL-------HRLGTQEW-QRAKE 568 >gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b] gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b] Length = 1155 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ AG E ++ + + L +PV Sbjct: 471 TEAQSLSPGDLVVHVDHGVGRYQGLEVITAAGAAHECLLLEYAEGS-KLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L E L + G A + K+ R +E ++ + AE R+L R Sbjct: 527 ---LLSRFGHEEGLLDKLGGGAWQAKKARLKERIREMADRL----IRIAAE--RELRR 575 >gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] Length = 1168 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 502 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 553 >gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] Length = 1168 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 502 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 553 >gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991] gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991] Length = 1143 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HG+G I +E+ G+ +F IA+ D + L VP+ + +RK Sbjct: 476 QELNVGDYVVHHQHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDV-LLVPLEQFQL--IRK 532 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109 L + W + ++ KI Sbjct: 533 FVSKEGAVPKLNKLGSGE------WEKTKRKVSEKIAQ 564 >gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101] gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101] Length = 1162 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 496 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 547 >gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str. 13] gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str. 13] Length = 1162 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ G+G IK+ EV G K ++ I + K L VPV + + Sbjct: 496 KPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGD-KLYVPVEQLDLV 547 >gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] Length = 1174 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ AHG+G I++ V +K ++ I + + L +P + Sbjct: 505 NVGDFVVHQAHGIGQYIGIEKLSVGEIKRDYLKIRYQEGDF-LYIPTNQLD 554 >gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101] gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101] Length = 1174 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 491 TETQSLTPGDLVVHVDHGIGRYLGMEVITAAGAAHECLLLEYAENS-KLYLPVENIE--- 546 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + + L + G A + K+ R +E K+ + AE R L R Sbjct: 547 ---LLSKYGHDEGLLDKLGGGAWQSKKARLKERIREMADKL----IRIAAE--RALRR 595 >gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] Length = 1148 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + GE +V+ HGV + + GM E+ ++ + L VP + + R + Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPTDQMDRVN-RFIGS 542 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 R+ W +RA+E S A R+L ++ E + Sbjct: 543 GDEPPSL-------HRLGTQEW-QRAKEK----ASESAEETA---RELLEIYAKRELASG 587 >gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] Length = 1167 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ +V G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQVQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|91977093|ref|YP_569752.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB5] gi|91683549|gb|ABE39851.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB5] Length = 1172 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 12/102 (11%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ EV G + + + + L +PV + R S+ Sbjct: 503 GDIVVHVEHGIGRFIGLQTLEVGGAPHDCVELHYA-NDTKLFLPVENIELLS-RYGSDGT 560 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI +A Sbjct: 561 NVE--LDKLGG------SGWQARKAKLKNRIRQIAGELIKVA 594 >gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM 17678] gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM 17678] Length = 1134 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ GVG T I++ V +K ++ I + L VP+ + + Sbjct: 494 KVGDYVVHENSGVGKYTGIEQITVNNIKRDYLKIVYQGGD-NLYVPIDQMDKV 545 >gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1196 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + + +++V+ HG+G IK EV G+ ++ I + + L VP + +I Sbjct: 511 RELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDS-LYVPTEQIDEI 565 >gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5] gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5] Length = 1218 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+ +V+ HG+G E+ ++ V G E+ VI + K Sbjct: 517 MPSRRRNTIDPLELKAGDFVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGD 576 Query: 56 CLKVPVGKAIDI 67 L VP + + Sbjct: 577 RLFVPTDQLDQL 588 >gi|260575079|ref|ZP_05843080.1| transcription-repair coupling factor [Rhodobacter sp. SW2] gi|259022701|gb|EEW25996.1| transcription-repair coupling factor [Rhodobacter sp. SW2] Length = 1147 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 22/124 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HGVG ++ G E + + ++ L +PV Sbjct: 472 AEVNSLSPGDLVVHVEHGVGRFRGLETIMALGAPHECLALEYAENA-RLYLPVENIE--- 527 Query: 69 MRKLSEAHFVER-ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L + E L + G A W Q AK+ + IAE L R + Sbjct: 528 ---LLSRYGHEEGLLDRLGGGA------W----QAKKAKLKD-RIREIAE---RLMRIAA 570 Query: 128 QPEK 131 + Sbjct: 571 ERHL 574 >gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-175] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes Clip81459] gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str. Scott A] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC 27029] gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC 27029] Length = 1218 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ + G+ +V+ HG+G E+ ++ V G E+ VI + K Sbjct: 517 MPSRRRNTIDPLELKAGDFVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGD 576 Query: 56 CLKVPVGKAIDI 67 L VP + + Sbjct: 577 RLFVPTDQLDQL 588 >gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262] gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] Length = 1167 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ +V G+ ++ I + + +P+ + + Sbjct: 490 VGDYVVHNVHGIGRFLGIETIQVQGIHRDYVTIQYQNSD-RISLPIDQIGSL 540 >gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217] gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217] Length = 1150 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E V+ + + L +PV Sbjct: 470 TEAQSLSIGDLVVHVDHGIGRYLGLEVVTAAGAAHECLVLEYAESS-KLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + E L + G A + K+ R +E ++ + AE R L R Sbjct: 526 ---LLSKYGHEEGFLDRLGGGAWQAKKARLKERIREMADRL----IRVAAE--RALRR 574 >gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes Finland 1988] gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161] gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818] gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|316934177|ref|YP_004109159.1| transcription-repair coupling factor [Rhodopseudomonas palustris DX-1] gi|315601891|gb|ADU44426.1| transcription-repair coupling factor [Rhodopseudomonas palustris DX-1] Length = 1172 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 TG+ +V+ HG+G ++ +V G + + + + L +PV + R S+ Sbjct: 501 STGDIVVHVEHGIGRFVGLQTLQVGGAPHDCVELHYA-NDTKLFLPVENIELLS-RYGSD 558 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI +A Sbjct: 559 GTTVE--LDKLGG------SGWQARKAKLKNRIRQIAGELIKVA 594 >gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes 10403S] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74] gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74] Length = 1108 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 490 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 549 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 550 --RLYIPTDQLEQI 561 >gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-561] gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.] Length = 1171 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 24/123 (19%) Query: 3 FQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 ++ +M F + G+ +V+ HG+G I + V G +F +I KD L + Sbjct: 490 SARRPASMIIAFEDLKKGDLVVHNDHGIGQYEGIAKLTVDGSTNDFLLI-LYKDDDRLYL 548 Query: 60 PVGKAIDI----GMRKLSEAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINSGDL 112 PV K + G+ ++ L + GKA W R RA++ KI G+L Sbjct: 549 PVDKMNMVFKYMGVDEIVP------VLDKMGGKA------WDRVKERAKKSAEKIA-GEL 595 Query: 113 IAI 115 + + Sbjct: 596 LKL 598 >gi|46205180|ref|ZP_00048899.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Magnetospirillum magnetotacticum MS-1] Length = 312 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 193 QALQPGDLVVHADHGIGRFVGLKTVTAAGAPHDCLELQYAGG--LLLLPVENIE---LLT 247 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 + E AL + G A W R AK+ +G+LI +A Sbjct: 248 RYGSEDSEVALDRLGGGA------WQAR----KAKMKRRILEMAGELIKVA 288 >gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] Length = 1179 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I ++ L +PV + I Sbjct: 497 KTGDYVVHENHGIGKYIGMETLEVDGVHQDYLTI-IYQNDDKLFIPVTQLNMI 548 >gi|255527537|ref|ZP_05394404.1| peptidase M16 domain protein [Clostridium carboxidivorans P7] gi|296187923|ref|ZP_06856315.1| peptidase M16 inactive domain protein [Clostridium carboxidivorans P7] gi|255508775|gb|EET85148.1| peptidase M16 domain protein [Clostridium carboxidivorans P7] gi|296047049|gb|EFG86491.1| peptidase M16 inactive domain protein [Clostridium carboxidivorans P7] Length = 407 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL---HRTDSQP 129 + A V++A+ L+ K R + ++R KI + L ++ R L Sbjct: 304 TSAENVDKAINLINEKIREIK---NKRGYFNTEKIKA--LSKNIKLKRQLKLERAIQLCK 358 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 E S E +Y+ A + +E+ + +I+E + I +I L++ S Sbjct: 359 ELSTYE-IMYDDAEK-LYKEVEGLENINEEKIIEVINKVLNNPS 400 >gi|210632828|ref|ZP_03297561.1| hypothetical protein COLSTE_01465 [Collinsella stercoris DSM 13279] gi|210159387|gb|EEA90358.1| hypothetical protein COLSTE_01465 [Collinsella stercoris DSM 13279] Length = 167 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 26/168 (15%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC---LKVPVGKAIDIGM 69 F G+H+++P GV T+T E +++ K L P+ + + Sbjct: 1 MFHVGQHVIHPGQGVCTVTGFTE----DAVHPMILLS-AKSGHTETHLMYPLAQQDR--L 53 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDA-----KINSGDLIAIAEVVRDLHR 124 + E L+ G A + ++ R + ++ G V + + Sbjct: 54 HAVISREDAE---DLLGGYADLDVDTFTERNSSLEETHFKQQLKLGAP-ETVRVAKTMRA 109 Query: 125 T------DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 + SY R + + A R V E A + E E Sbjct: 110 RISEAEAHGKKPSSYYTR-VLKEARRRSVEEFAVALHVDEDAVEERFE 156 >gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] Length = 1174 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 27/123 (21%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G ++ EV G ++ I +D L +PV Sbjct: 497 KKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYMTI-LYQDDAKLFIPVS------------ 543 Query: 75 AHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDS 127 +++ K V +++ R W++ + K + IA+ + DL+ + ++ Sbjct: 544 --QLDKIQKYVSSESKTPRVNKLGGSEWAKTKRRVANK-----IEDIADELVDLYAKREA 596 Query: 128 QPE 130 + Sbjct: 597 EKG 599 >gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius UCC118] gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius UCC118] Length = 1174 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 27/123 (21%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G ++ EV G ++ I +D L +PV Sbjct: 497 KKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYMTI-LYQDDAKLFIPVS------------ 543 Query: 75 AHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDS 127 +++ K V +++ R W++ + K + IA+ + DL+ + ++ Sbjct: 544 --QLDKIQKYVSSESKTPRVNKLGGSEWAKTKRRVANK-----IEDIADELVDLYAKREA 596 Query: 128 QPE 130 + Sbjct: 597 EKG 599 >gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1178 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 502 KVGDYVVHINHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 553 >gi|255262960|ref|ZP_05342302.1| transcription-repair coupling factor [Thalassiobium sp. R2A62] gi|255105295|gb|EET47969.1| transcription-repair coupling factor [Thalassiobium sp. R2A62] Length = 1151 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 22/124 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ AG E ++ + + + L +PV Sbjct: 472 TETQSLTPGDLVVHVDHGVGRFRGLEVVTAAGAAHECLLLEYAE-QSKLYLPVENIE--- 527 Query: 69 MRKLSEAHFVER-ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L + + L + G A W Q AK+ + IAE L R + Sbjct: 528 ---LLSKYGHDEGLLDKLGGGA------W----QAKKAKLKE-RIRQIAE---RLIRVAA 570 Query: 128 QPEK 131 + E Sbjct: 571 EREL 574 >gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2] gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2] Length = 1142 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 460 GEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYIPVENIE------VIKKY 512 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ + W +R++ K+ I E+ L + ++ + + S Sbjct: 513 GNDNA-----ELDKLGSSSW-QRSKA---KLK----NRIKEIALHLIQIAAKRKLNSS 557 >gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1174 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 27/123 (21%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G ++ EV G ++ I +D L +PV Sbjct: 497 KKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYMTI-LYQDDAKLFIPVS------------ 543 Query: 75 AHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDS 127 +++ K V +++ R W++ + K + IA+ + DL+ + ++ Sbjct: 544 --QLDKIQKYVSSESKTPRVNKLGGSEWAKTKRRVANK-----IEDIADELVDLYAKREA 596 Query: 128 QPE 130 + Sbjct: 597 EKG 599 >gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] Length = 1168 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G +K EV G ++ I++ +D L +PV + I Sbjct: 488 KPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISY-RDSAKLFIPVTQLNMI 539 >gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] Length = 1168 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G +K EV G ++ I++ +D L +PV + I Sbjct: 488 KPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISY-RDSAKLFIPVTQLNMI 539 >gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2] gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2] Length = 976 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 17/122 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G ++V+ HG+G +K E+ G K +F + + L VPV + R +++ Sbjct: 343 QPGSYVVHEQHGIGIFKGLKAIEILGAKRDFVELEYAGGD-KLLVPVENLDVLS-RYIAD 400 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + V KL S+ + AK+ L IA D+ + +Q E + Sbjct: 401 SGSVAVVDKLG-----------SQSFAKLKAKVKE-RLFEIAA---DIVKIAAQRELTPG 445 Query: 135 ER 136 ++ Sbjct: 446 KK 447 >gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp. Tu6071] gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp. Tu6071] Length = 1181 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ TG++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 490 MPVRRRKSIDPLTLETGDYIVHVQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 549 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 550 --RLYIPTDQLEQI 561 >gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB18] gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisB18] Length = 1172 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 18/115 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ EV G + + + D L +PV + R S+ Sbjct: 503 GDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELHYAADT-KLFLPVENIELLS-RYGSDHA 560 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE L + G + W R AK+ I E+ +L + ++ Sbjct: 561 HVE--LDRLGG------SGWQAR----KAKLK----NRIREMAGELIKIAAERHL 599 >gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners LactinV 01V1-a] gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners LactinV 01V1-a] Length = 708 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str. MC2 155] gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str. MC2 155] Length = 1215 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K L VP+ + Sbjct: 518 GDLVVHDQHGIGKFVEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQL 573 >gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] Length = 1232 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M +++ R G+H+V+ HG+G E+ ++ V G E+ VI + K Sbjct: 535 MPSRRRNTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGD 594 Query: 56 CLKVPVGKAIDI 67 L VP + + Sbjct: 595 RLFVPTDQLDQL 606 >gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1168 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G +K EV G ++ I++ +D L +PV + I Sbjct: 488 KPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISY-RDSAKLFIPVTQLNMI 539 >gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf. prausnitzii KLE1255] gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf. prausnitzii KLE1255] Length = 1157 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 2 TFQQKRDAMRQGF------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 +KR R + G+++V+ +HG+G I+ EV G ++ + + + Sbjct: 470 AETKKRKKNRNALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV 529 Query: 56 CLKVPVGKAI 65 L VPV + Sbjct: 530 -LYVPVTQLD 538 >gi|242309312|ref|ZP_04808467.1| transcription-repair coupling factor [Helicobacter pullorum MIT 98-5489] gi|239524353|gb|EEQ64219.1| transcription-repair coupling factor [Helicobacter pullorum MIT 98-5489] Length = 1008 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Query: 2 TFQQKRDAMR---QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 T Q+K+ A + + G+++V+ +GV I + + G +F + + + L Sbjct: 358 TKQKKKFANKILIDELKVGDYVVHIDYGVALFNGIVQANIFGATRDFIELKYLGED-KLL 416 Query: 59 VPVGKAIDIGMRKLSEAH--FVERA----LKLVRGKARVK 92 +PV I R +++ +++ ++ K + K Sbjct: 417 LPVENLDRID-RYIADGGIPILDKLGKGSFARLKEKVKEK 455 >gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus HTCC2516] gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus HTCC2516] Length = 1151 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HGVG ++ AG E V+ + + L +PV Sbjct: 475 TETQSLGPGDLVVHVDHGVGRYRGLEVITAAGAAHECLVLEYAEGA-KLYLPVENIE--- 530 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E ++ Sbjct: 531 ---LLSRYGHEEGLLDRLGGGAWQAKKARLKERIREMAERL 568 >gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae KM-6054] Length = 1202 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M +++ G+++V+ HGVG E+ ++ V G E+ V+ + D Sbjct: 506 MPSRRRNAIDPLALAAGDYVVHEQHGVGRYVEMVQRTVQGATREYLVLEYAPAKRGHPGD 565 Query: 54 KMCLKVPVGKAIDI 67 L VP + + Sbjct: 566 --RLFVPTDQLDQV 577 >gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] Length = 1173 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 G+++V+ HG+G T ++ E+ G+ ++ I KD L +PV Sbjct: 499 NPGDYVVHVNHGIGKYTGMETLEIDGIHQDYMSI-IYKDDAKLFIPV 544 >gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37] gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37] Length = 1159 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 478 TEHQSLSPGDLVVHVDHGIGRYMGMEVITAAGSPHECLLLQYAE-DAKLYLPVENIE--- 533 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 534 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 571 >gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] Length = 1164 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G ++ V + + + L +PV + Sbjct: 484 AELSALTPGDLVVHMDHGIGRYIGLEAVAVGASPHDCVQLEYAGGD-KLYIPVENLDVLS 542 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRR-AQEYDAKINSGDLIAIAEVVRDLHRTDS 127 R S+A V L + G+A W RR A+ + + E+ L T + Sbjct: 543 -RYGSDAEGVS--LDKLGGEA------WQRRKARMRERIL---------EMAGQLMATAA 584 Query: 128 QPEKSYS 134 Sbjct: 585 HRALRQG 591 >gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] Length = 1152 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 20/129 (15%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ IV+ HGVG ++ +V + + + + +PV I Sbjct: 478 AEAAALSPGDMIVHIDHGVGRYEGLQTVDVGSAPHDCLELVYAGGD-KILLPVENIELIS 536 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMW-SRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 R A E ++ + G W SR+A+ + E+ DL R + Sbjct: 537 -RY--GADSGEGSMDKLGG------AGWQSRKAKAKKNIM---------EMAGDLIRIAA 578 Query: 128 QPEKSYSER 136 + E +E+ Sbjct: 579 EREMRKAEK 587 >gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1] gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1] Length = 765 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|315301109|ref|ZP_07872401.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596] gi|313630521|gb|EFR98362.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596] Length = 237 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 20 KVGDYVVHINHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 71 >gi|88607738|ref|YP_504735.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ] gi|88598801|gb|ABD44271.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ] Length = 1139 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 23/171 (13%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 + G+ +V+ +GVG ++ V G +F I + D L VPV Sbjct: 455 RTVTNNASELTIGDVVVHKDYGVGIFIALRTLTVCGSCHDFVEIKYRNDD-KLFVPVEDT 513 Query: 65 IDIGMRKLSEAHFV--ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 L + + + L + + W + K+ + IA + L Sbjct: 514 ------DLITKYGINTDVVLDRL------GSSAW----HDKQNKLKK-RIDDIA---KTL 553 Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173 ++ + + R L S +E V + + +AI +E +L+ Sbjct: 554 LHAEAMRKLADGSRFLPSSLYIDFCKECPYVETEDQLKAIADVENDLARGK 604 >gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8] gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8] Length = 1153 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 1 MTFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52 MT ++K+ + G G+ +V+ +G+G I+ E G+K ++ I + Sbjct: 467 MTTKRKKPKHKAGEEIKALSDIHTGDLVVHSMYGIGKFQGIRNIETNGVKKDYITINYAG 526 Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSR 98 + L VPV + + R + L + T W+R Sbjct: 527 TDV-LYVPVTQLDLVS-RYVGPGEDGGIKLNKLN------STEWTR 564 >gi|94267602|ref|ZP_01290937.1| Transcription factor CarD [delta proteobacterium MLMS-1] gi|93451931|gb|EAT02653.1| Transcription factor CarD [delta proteobacterium MLMS-1] Length = 613 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 25/126 (19%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG-MRKLS 73 G+ +V+ HG+G + E+ G+ ++ I + L +PV + +G + L+ Sbjct: 480 NPGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGAD-KLYIPVDQLNSVGKYKGLA 538 Query: 74 EAH-FVERALKL--VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + +++ + + +VK+ +W +V RDL + ++ + Sbjct: 539 DQEPTLDKLGDNSWLATRQKVKKAVW--------------------QVARDLLKLYAKRQ 578 Query: 131 KSYSER 136 + R Sbjct: 579 LAEGNR 584 >gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2053A-b] gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2053A-b] Length = 1110 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN 1401G] gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN 1401G] Length = 1110 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2062A-h1] gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2062A-h1] Length = 1110 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] Length = 1183 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G + E+ G+ + + +D + +PV + Sbjct: 500 EVGDYVVHVHHGIGQFRGMDTIEMNGIHKDLLSV-VYQDDSRILIPVDQI 548 >gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] Length = 1162 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G + E+ G + + + L VPV Sbjct: 497 GDFVVHAEHGIGQYIGLDTLEIGGAPHDCLRLVYAGGD-KLFVPVENID 544 >gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] Length = 1162 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A Q G+ +V+ HG+G ++ V + + ++ + L +PV + Sbjct: 479 AELQALTRGDLVVHVEHGIGKYLGLEPIAVGKSQHDCVMLEYRGGD-KLYIPVENIDVLS 537 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R S V L + G+A W RR + +I E+ +L +T +Q Sbjct: 538 -RYGSSEEAV--MLDKLGGEA------WQRRRAQLRERIR--------EIAGELMKTAAQ 580 Query: 129 PEK 131 Sbjct: 581 RAL 583 >gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och 149] gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och 149] Length = 1154 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ IV+ HG+G ++ AG E ++ + + L +PV Sbjct: 471 TETQSLSPGDLIVHVDHGIGRYRGLEVITAAGAAHECILLEYAESS-KLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E K+ Sbjct: 527 ---LLSKYGHEEGLLDRLGGGAWQAKKARLKERIREIAEKL 564 >gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS] gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS] gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS] gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS] Length = 1211 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K L VP+ + Sbjct: 518 GDLVVHDQHGIGRFVEMTERVVGGARREYLVLEYASSKRGGGSDRLYVPMDSLDQL 573 >gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus HTCC2654] gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2654] Length = 1153 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q GE IV+ HGVG ++ G + ++ + L +PV Sbjct: 473 TEHQSLSPGELIVHVDHGVGIYRGLETITALGAPHDCVLLEYAGGD-RLYLPVENIE--- 528 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E+ L + G A + K+ R +E K+ Sbjct: 529 ---LLSKYGHEQGLLDKLGGGAWQAKKARLKERIREVADKL 566 >gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS] gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS] Length = 1211 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K L VP+ + Sbjct: 518 GDLVVHDQHGIGRFVEMTERVVGGARREYLVLEYASSKRGGGSDRLYVPMDSLDQL 573 >gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102] gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102] Length = 1170 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 R G+++V+ HGVG +++ + ++ V+ + + + A +G Sbjct: 501 RPGDYVVHRNHGVGKFVKLESLTINDETRDYLVVQYADGLLRV-----AADQVG 549 >gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421] gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421] Length = 1148 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 14/113 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G I+ G + ++ + ++ + +P+ +A + R + Sbjct: 486 NPGDYVVHVNYGIGLFKGIERVRSGGTERDYINL-LYANEETVFIPIEQANLVQ-RYIGN 543 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 R L ++ K+ W R K+ + IA + DL+ Sbjct: 544 EGEAPR-LDILGSKS------WENR----KNKVKK-SVEDIANKLIDLYSRRK 584 >gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu 4113] gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu 4113] Length = 1236 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G+ IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 546 MPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 605 Query: 54 KMCLKVPVGKAIDI 67 L VP + + Sbjct: 606 --RLFVPTDQLEQV 617 >gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM 13335] gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1] gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM 13335] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus UPII 345-E] gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus UPII 345-E] Length = 1126 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V +HG+G + E+ G+ ++ I + D L +P+ K + Sbjct: 454 KVGDYVVQRSHGIGKYIGVNTIEIDGIHRDYVTIQYAGDD-KLYLPMEKIRTL 505 >gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1201 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 17/122 (13%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 M +++ + G+++V+ HGVG E+ ++V G E+ +I + Sbjct: 504 MPSRRRGTVDPLQLKPGDYVVHEQHGVGRYLEMVSRQVQGATREYLLIEYAPS------- 556 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSR---RAQEYDAKINSGDLI 113 K G R + + V G+A M WS+ RA++ +I GDLI Sbjct: 557 --KRGQPGDRLFVPTEQLGEVTRYVGGEAPTLSKMGGAEWSKAKSRARKVVREIA-GDLI 613 Query: 114 AI 115 + Sbjct: 614 RL 615 >gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis MA-4680] gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces avermitilis MA-4680] Length = 1176 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 546 --RLYIPTDQLEQI 557 >gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S] gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S] Length = 1154 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 18/117 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +V+ HG+G + + VA + + + L VPV + R SE Sbjct: 486 SPGDLVVHMDHGIGRYEGLTQIPVAKAAHDCVALEYAGGD-KLYVPVENLEVLS-RYGSE 543 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + V L + G+A W RR +I E+ +L +T ++ Sbjct: 544 SEGVS--LDKLGGEA------WQRRKARMKERIR--------EIAGELLKTAAERAL 584 >gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1] gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1] Length = 1215 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ VI + K L VP+ + Sbjct: 528 GDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQL 583 >gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC 55195] gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC 55195] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900] gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900] Length = 709 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 32 KVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 83 >gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM 19965] gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM 19965] Length = 1132 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V +HG+G + E+ G+ ++ I + D L +P+ K + Sbjct: 460 KVGDYVVQRSHGIGKYIGVNTIEIDGIHRDYVTIQYAGDD-KLYLPMEKIRTL 511 >gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF 3008A-a] gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF 3008A-a] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis BCW-1] Length = 1200 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ + G+ IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPARRRKTIDPLSLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L VP + I Sbjct: 546 --RLFVPTDQLEQI 557 >gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV 09V1-c] gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV 09V1-c] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|289568998|ref|ZP_06449225.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T17] gi|289542752|gb|EFD46400.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T17] Length = 697 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII 60-B] gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII 60-B] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL N1-067] Length = 746 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + + Sbjct: 70 KVGDYVVHINHGIARYVGMETLDINGVHKDYLLLVYQGED-KLFIPVDQLDLV 121 >gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN 2503V10-D] gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN 2503V10-D] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV 11V1-d] gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV 11V1-d] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4] gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4] Length = 1215 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ VI + K L VP+ + Sbjct: 528 GDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQL 583 >gi|254511931|ref|ZP_05123998.1| transcription-repair coupling factor [Rhodobacteraceae bacterium KLH11] gi|221535642|gb|EEE38630.1| transcription-repair coupling factor [Rhodobacteraceae bacterium KLH11] Length = 1151 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + + L +PV Sbjct: 471 TETQSLSPGDLVVHVDHGIGRYQGMEVVTAAGAAHECLLLEYAE-QSKLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E K+ Sbjct: 527 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADKL 564 >gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] Length = 1165 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|328955733|ref|YP_004373066.1| hypothetical protein Corgl_1145 [Coriobacterium glomerans PW2] gi|328456057|gb|AEB07251.1| hypothetical protein Corgl_1145 [Coriobacterium glomerans PW2] Length = 170 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 22/177 (12%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV--PVGKAIDIGMR 70 FR GEH+++P GV TIT E ++ + ++ P+ ++ + Sbjct: 1 MFRIGEHVIHPGQGVCTITGFDE----AAPNPMIILESKQGHARTRMKYPLSQSDRLH-- 54 Query: 71 KLSEAHFVERALKLVRGKARVKRT--MWSRRAQEYDAKINSGDLIAIAEVVRDLHRT--- 125 ER ++ T S + + G + V + + Sbjct: 55 ATVSREEAERVMENYDAIECDSFTERNSSLEESHFKQLLKQG-VPETLRVAKTMRLRIME 113 Query: 126 --DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL------IEVNLSSKSS 174 + S ++ + A R V E+A +SE + I+ L S+ Sbjct: 114 AESRDKKPSSYYTRVLKEAHRRSVEELAVALGVSESDIERRFAGVADIDEFLDPSSN 170 >gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII 143-D] gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII 143-D] Length = 1110 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1163 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1] gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1] Length = 1198 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 26/164 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+ +V+ HGVG + EV +K +F +I + L VPV +G K S Sbjct: 519 NEGDAVVHVDHGVGRFGGLVSLEVGQLKNDFLLIIYADGD-KLYVPVENLDRVG--KHSS 575 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 V+ L + GK W++ RA+ ++ +AE +L +Q E + Sbjct: 576 GEEVQ--LDKLGGKR------WAKTRAKARKK------ILEMAE---ELVAIQAQREATQ 618 Query: 134 SERQLY---ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +Y ++ ++ + +AI + +++S + Sbjct: 619 G--VVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKA 660 >gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1165 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22] gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces scabiei 87.22] Length = 1177 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 546 --RLYIPTDQLEQI 557 >gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd [Mycobacterium tuberculosis T85] gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd [Mycobacterium tuberculosis T85] Length = 849 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 136 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 194 >gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] Length = 1163 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV 03V1-b] gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV 03V1-b] Length = 1110 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2052A-d] gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2052A-d] Length = 1110 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HG+G IK E G K ++ I + L VP + + Sbjct: 436 QELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHD-QLFVPADQLGVV 490 >gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1149 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 20/165 (12%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HG+G I +EV G+ +F IA+ D + L VP+ + +RK Sbjct: 477 QELHIGDYVVHNQHGIGKYLGIVNKEVDGIHKDFLHIAYKGDDV-LLVPLEQFQL--IRK 533 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP-- 129 L + W E K S + +A+ + L+ + Sbjct: 534 FVSKEGAAPKLNKLGSGE------W-----EKTKKKVSAKIAELADRLIHLYANRDEHIG 582 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 + + + + E+ I + +A+ I+ ++ S Sbjct: 583 HAFAKDTAMQKEFEDDFDYELT----IDQAKAVKEIKSDMESSKP 623 >gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC 29083] gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC 29083] Length = 1190 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 500 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 559 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 560 --RLYIPTDQLEQI 571 >gi|148255539|ref|YP_001240124.1| transcription repair coupling factor [Bradyrhizobium sp. BTAi1] gi|146407712|gb|ABQ36218.1| transcription-repair coupling factor [Bradyrhizobium sp. BTAi1] Length = 1171 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HG+G ++ EVAG + + + + L +PV + R S+ Sbjct: 501 IGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAGET-KLYLPVENIELLS-RYGSDQ 558 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI IA Sbjct: 559 TSVE--LDKLGG------SGWQTRKAKLKNRIREMAGELIKIA 593 >gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] Length = 1169 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 1169 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + L VPV + + Sbjct: 502 EVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDLV 553 >gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] Length = 1173 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 497 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 548 >gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus Tu4000] gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus Tu4000] Length = 1187 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G+HIV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 496 MPARRRKTIDPLTLEAGDHIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 555 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 556 --RLYIPTDQLEQI 567 >gi|257438137|ref|ZP_05613892.1| transcription-repair coupling factor [Faecalibacterium prausnitzii A2-165] gi|257199468|gb|EEU97752.1| transcription-repair coupling factor [Faecalibacterium prausnitzii A2-165] Length = 1155 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+++V+ +HG+G I+ EV G ++ I + + L VPV + Sbjct: 489 KPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDV-LYVPVTQLD 538 >gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32] gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32] Length = 1153 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV IG Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVASLNLIG 533 >gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17] gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17] Length = 1155 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + +QKR F G+ +V+ HG+G + V + +++ Sbjct: 468 LVRRQKRRKSADAFLAELATLSPGDLVVHSDHGIGRYEGLTSIPVGKSPHDCVALSYAGG 527 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113 L VPV + R S L + G+A W RR + +I Sbjct: 528 D-KLYVPVENLEVL-TRYGSGEDGAT--LDRLGGEA------WQRRKSKMKERIR----- 572 Query: 114 AIAEVVRDLHRTDSQPEKSYSE 135 E+ +L T ++ E Sbjct: 573 ---EIAGELIATAAERALRPGE 591 >gi|126736472|ref|ZP_01752213.1| transcription-repair coupling factor [Roseobacter sp. CCS2] gi|126714010|gb|EBA10880.1| transcription-repair coupling factor [Roseobacter sp. CCS2] Length = 1148 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 22/124 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HGVG T ++ G E ++ + + L +PV Sbjct: 470 SEANSLSPGDLVVHVDHGVGRYTGMEVVTALGAAHECLLLEYAE-DSKLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 L + E L + G A W Q AK+ + IAE L R + Sbjct: 526 ---LLSKYGHETGLLDKLGGGA------W----QAKKAKLKE-RIRQIAE---RLIRVAA 568 Query: 128 QPEK 131 + E Sbjct: 569 EREL 572 >gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] Length = 1148 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + GE +V+ HGV + + GM E+ ++ + L VP + + R + Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPADQMDRVN-RFIGS 542 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 R+ W +RA+E S A R+L ++ E + Sbjct: 543 GDEPPSL-------HRLGTQEW-QRAKEK----ASESAEETA---RELLEIYAKRELASG 587 >gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01] gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01] Length = 1153 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV IG Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVASLNLIG 533 >gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] Length = 1165 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I+ + G+ ++ I + + + +PV + + Sbjct: 491 GDYVVHHVHGIGKFLGIETIAIHGVHRDYLTIQY-QGSSTISLPVEQIESL 540 >gi|237803178|ref|YP_002888372.1| transcription-repair coupling factor [Chlamydia trachomatis B/Jali20/OT] gi|231274412|emb|CAX11207.1| transcription-repair coupling factor [Chlamydia trachomatis B/Jali20/OT] Length = 1079 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSEK 515 >gi|76789489|ref|YP_328575.1| transcription-repair coupling factor [Chlamydia trachomatis A/HAR-13] gi|237805099|ref|YP_002889253.1| transcription-repair coupling factor [Chlamydia trachomatis B/TZ1A828/OT] gi|255311580|ref|ZP_05354150.1| transcription-repair coupling factor [Chlamydia trachomatis 6276] gi|255317881|ref|ZP_05359127.1| transcription-repair coupling factor [Chlamydia trachomatis 6276s] gi|76168019|gb|AAX51027.1| transcription-repair coupling factor [Chlamydia trachomatis A/HAR-13] gi|231273399|emb|CAX10314.1| transcription-repair coupling factor [Chlamydia trachomatis B/TZ1A828/OT] Length = 1079 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSEK 515 >gi|15605481|ref|NP_220267.1| transcription-repair coupling factor [Chlamydia trachomatis D/UW-3/CX] gi|3329208|gb|AAC68343.1| Transcription-Repair Coupling [Chlamydia trachomatis D/UW-3/CX] gi|296437224|gb|ADH19394.1| transcription-repair coupling factor [Chlamydia trachomatis G/11222] gi|297748878|gb|ADI51424.1| Transcription-repair coupling factor [Chlamydia trachomatis D-EC] gi|297749758|gb|ADI52436.1| Transcription-repair coupling factor [Chlamydia trachomatis D-LC] Length = 1079 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSEK 515 >gi|306845910|ref|ZP_07478478.1| transcription-repair coupling factor [Brucella sp. BO1] gi|306273802|gb|EFM55640.1| transcription-repair coupling factor [Brucella sp. BO1] Length = 1170 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] Length = 1185 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G+HIV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 494 MPARRRKTIDPLTLEAGDHIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 553 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 554 --RLYIPTDQLEQI 565 >gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM 15176] gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM 15176] Length = 1153 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 2 TFQQKRDAMRQGFR------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 T Q+K+ + G+ +V+ HG+G I+ V G+ ++ I +DK + Sbjct: 468 TAQKKKKRNKDALNSLSEISPGDLVVHQNHGIGRYAGIQRMAVQGVTKDYLRIEYDKKDV 527 Query: 56 CLKVPVGKAI 65 L VPV + Sbjct: 528 -LYVPVTQLD 536 >gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM 12614] gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM 12614] Length = 1161 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G G+ +V+ HG+G +K E G + + + L +PV + Sbjct: 488 TEATGLSEGDLVVHVDHGIGRFIGLKTIEAVGAPHDCLELQYAGGD-KLYLPVENIELLS 546 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R SE + L + G A W R AK+ ++ IA+ L +T +Q Sbjct: 547 -RYGSEDQEAQ--LDKLGGGA------WQAR----KAKLKK-RILEIAD---GLIKTAAQ 589 Query: 129 PEK 131 Sbjct: 590 RAL 592 >gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14] gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14] Length = 1184 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 493 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 552 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 553 --RLYIPTDQLEQI 564 >gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45] gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45] Length = 1160 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 480 TETQSLSPGDLVVHVDHGIGRYQGMEVITAAGAAHECLLLEYAEGA-RLYLPVENIE--- 535 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E K+ Sbjct: 536 ---LLSRYGHEEGLLDRLGGGAWQAKKARLKERIREMADKL 573 >gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] Length = 1153 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV IG Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVASLNLIG 533 >gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] Length = 1159 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G IK+ V G ++ I + L VP + + Sbjct: 490 NIGDYVVHENYGIGQYMGIKKLTVEGKSRDYLFIRYADGD-NLYVPTDRMSLV 541 >gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] Length = 1172 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ V G K ++ IA+ K+ + +PV + I Sbjct: 492 NVGDYVVHINHGIGRYEGLQTMTVDGGKQDYLSIAYQKNA-KIFIPVTQLNLI 543 >gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis] Length = 1121 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G ++ E+ G +F I + + L +PV + + + Sbjct: 460 GEFVVHKDHGIGQFLRLEALEIKGKPHDFLKILYAGND-KLYIPVESIE------VIKKY 512 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ W +R++ K + IA L + ++ + S S Sbjct: 513 GNDNA-----ELDKLGSVSW-QRSKAKLKK----RIKEIAL---HLIQIAAKRKLSSS 557 >gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis GM 1503] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis EAS054] gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis EAS054] gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T46] gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis EAS054] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis K85] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|146340719|ref|YP_001205767.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278] gi|146193525|emb|CAL77541.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278] Length = 1172 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HG+G ++ EVAG + + + + L +PV + R S+ Sbjct: 502 IGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAGET-KLYLPVENIELLS-RYGSDQ 559 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIA 116 VE L + G + W R + +I G+LI IA Sbjct: 560 TNVE--LDKLGG------SGWQTRKAKLKNRIREMAGELIKIA 594 >gi|62317564|ref|YP_223417.1| transcription-repair coupling factor [Brucella abortus bv. 1 str. 9-941] gi|189022818|ref|YP_001932559.1| Mfd, transcription-repair coupling factor [Brucella abortus S19] gi|237817111|ref|ZP_04596103.1| transcription-repair coupling factor [Brucella abortus str. 2308 A] gi|254691061|ref|ZP_05154315.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 6 str. 870] gi|254698846|ref|ZP_05160674.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 2 str. 86/8/59] gi|254732293|ref|ZP_05190871.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 4 str. 292] gi|256256246|ref|ZP_05461782.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 9 str. C68] gi|260544801|ref|ZP_05820622.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260756658|ref|ZP_05869006.1| transcription-repair coupling factor [Brucella abortus bv. 6 str. 870] gi|260760089|ref|ZP_05872437.1| transcription-repair coupling factor [Brucella abortus bv. 4 str. 292] gi|260763327|ref|ZP_05875659.1| transcription-repair coupling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260882475|ref|ZP_05894089.1| transcription-repair coupling factor [Brucella abortus bv. 9 str. C68] gi|297249604|ref|ZP_06933305.1| transcription-repair coupling factor [Brucella abortus bv. 5 str. B3196] gi|62197757|gb|AAX76056.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 1 str. 9-941] gi|189021392|gb|ACD74113.1| Mfd, transcription-repair coupling factor [Brucella abortus S19] gi|237787924|gb|EEP62140.1| transcription-repair coupling factor [Brucella abortus str. 2308 A] gi|260098072|gb|EEW81946.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260670407|gb|EEX57347.1| transcription-repair coupling factor [Brucella abortus bv. 4 str. 292] gi|260673748|gb|EEX60569.1| transcription-repair coupling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260676766|gb|EEX63587.1| transcription-repair coupling factor [Brucella abortus bv. 6 str. 870] gi|260872003|gb|EEX79072.1| transcription-repair coupling factor [Brucella abortus bv. 9 str. C68] gi|297173473|gb|EFH32837.1| transcription-repair coupling factor [Brucella abortus bv. 5 str. B3196] Length = 1170 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|17989033|ref|NP_541666.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str. 16M] gi|17984874|gb|AAL53930.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str. 16M] Length = 1170 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1] gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1] Length = 1054 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 46/107 (42%), Gaps = 12/107 (11%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G G+ +++P HG+G ++ ++V G+ ++ I + + L VP+ + + R Sbjct: 374 GLSVGDFLIHPEHGIGQFLGLETRKVLGVTRDYLNIGY-RGGSRLSVPIEQLPILR-RHP 431 Query: 73 SEAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINSGDLIAIA 116 + + + W+R +A++ ++ + L+ A Sbjct: 432 GTTDDPPQL-------SSFDKKDWARAKEKARKNAEEVAAKLLVQYA 471 >gi|83269545|ref|YP_418836.1| transcription repair coupling factor [Brucella melitensis biovar Abortus 2308] gi|82939819|emb|CAJ12827.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Haem peroxidase:Transcription-repair coupli [Brucella melitensis biovar Abortus 2308] Length = 1122 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 458 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 514 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 542 >gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium tuberculosis H37Rv] gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis CDC1551] gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium bovis AF2122/97] gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis H37Ra] gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis F11] gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis H37Ra] gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 1435] gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis str. Haarlem] gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN 4207] gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN R506] gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu001] gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu002] gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu003] gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu004] gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu005] gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu006] gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu008] gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu007] gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu009] gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu010] gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu011] gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu012] gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN V2475] gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF) [Mycobacterium tuberculosis H37Rv] gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis CDC1551] gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF) [Mycobacterium bovis AF2122/97] gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis str. Haarlem] gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis H37Ra] gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis F11] gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 1435] gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CPHL_A] gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 02_1987] gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu001] gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu002] gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu003] gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu004] gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu005] gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu006] gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu007] gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu008] gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu009] gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu010] gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu011] gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis SUMu012] gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis CDC1551A] gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis W-148] gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 4207] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis 94_M4241A] gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis 94_M4241A] gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis 94_M4241A] Length = 1234 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 521 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579 >gi|215426299|ref|ZP_03424218.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis T92] gi|289749550|ref|ZP_06508928.1| transcription-repair coupling factor [Mycobacterium tuberculosis T92] gi|289690137|gb|EFD57566.1| transcription-repair coupling factor [Mycobacterium tuberculosis T92] Length = 571 Score = 43.6 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 378 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 436 >gi|294853624|ref|ZP_06794296.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026] gi|294819279|gb|EFG36279.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026] Length = 1170 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|256043474|ref|ZP_05446403.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str. Rev.1] gi|260564670|ref|ZP_05835155.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265989892|ref|ZP_06102449.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str. Rev.1] gi|260152313|gb|EEW87406.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263000561|gb|EEZ13251.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str. Rev.1] Length = 1170 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601] gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601] Length = 1186 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+ ++ + G+ ++ + + + L VPV + I Sbjct: 509 KVGDYVVHINHGIARYVGMETLNIGGVHKDYLNLIYQGED-KLFVPVDQLEMI 560 >gi|15834748|ref|NP_296507.1| transcription-repair coupling factor [Chlamydia muridarum Nigg] gi|270284915|ref|ZP_06194309.1| transcription-repair coupling factor [Chlamydia muridarum Nigg] gi|270288942|ref|ZP_06195244.1| transcription-repair coupling factor [Chlamydia muridarum Weiss] gi|7190159|gb|AAF39002.1| transcription-repair coupling factor [Chlamydia muridarum Nigg] Length = 1080 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSEK 515 >gi|256157728|ref|ZP_05455646.1| transcription-repair coupling factor [Brucella ceti M490/95/1] gi|256253301|ref|ZP_05458837.1| transcription-repair coupling factor [Brucella ceti B1/94] gi|261220415|ref|ZP_05934696.1| transcription-repair coupling factor [Brucella ceti B1/94] gi|265996234|ref|ZP_06108791.1| transcription-repair coupling factor [Brucella ceti M490/95/1] gi|260918999|gb|EEX85652.1| transcription-repair coupling factor [Brucella ceti B1/94] gi|262550531|gb|EEZ06692.1| transcription-repair coupling factor [Brucella ceti M490/95/1] Length = 1170 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|254720434|ref|ZP_05182245.1| transcription-repair coupling factor [Brucella sp. 83/13] gi|265985454|ref|ZP_06098189.1| transcription-repair coupling factor [Brucella sp. 83/13] gi|306838989|ref|ZP_07471810.1| transcription-repair coupling factor [Brucella sp. NF 2653] gi|264664046|gb|EEZ34307.1| transcription-repair coupling factor [Brucella sp. 83/13] gi|306405895|gb|EFM62153.1| transcription-repair coupling factor [Brucella sp. NF 2653] Length = 1171 Score = 43.6 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 507 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 562 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 563 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 591 >gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555] gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555] Length = 1173 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 3 FQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 +K + + F + G+ IV+ HG+G IK+ E+ G K ++ + ++ + L V Sbjct: 490 TNKKGTSKIKSFTELKPGDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECED-KLYV 548 Query: 60 PVGKAIDI 67 PV + + Sbjct: 549 PVEQLDMV 556 >gi|306841773|ref|ZP_07474459.1| transcription-repair coupling factor [Brucella sp. BO2] gi|306288178|gb|EFM59565.1| transcription-repair coupling factor [Brucella sp. BO2] Length = 1170 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|254695633|ref|ZP_05157461.1| transcription-repair coupling factor [Brucella abortus bv. 3 str. Tulya] gi|254699816|ref|ZP_05161644.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513] gi|261216031|ref|ZP_05930312.1| transcription-repair coupling factor [Brucella abortus bv. 3 str. Tulya] gi|261750288|ref|ZP_05993997.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513] gi|260917638|gb|EEX84499.1| transcription-repair coupling factor [Brucella abortus bv. 3 str. Tulya] gi|261740041|gb|EEY27967.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513] Length = 1170 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|225629075|ref|ZP_03787108.1| transcription-repair coupling factor [Brucella ceti str. Cudo] gi|254705928|ref|ZP_05167756.1| transcription-repair coupling factor [Brucella pinnipedialis M163/99/10] gi|254711152|ref|ZP_05172963.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94] gi|254712390|ref|ZP_05174201.1| transcription-repair coupling factor [Brucella ceti M644/93/1] gi|254715462|ref|ZP_05177273.1| transcription-repair coupling factor [Brucella ceti M13/05/1] gi|256029533|ref|ZP_05443147.1| transcription-repair coupling factor [Brucella pinnipedialis M292/94/1] gi|260167377|ref|ZP_05754188.1| transcription-repair coupling factor [Brucella sp. F5/99] gi|261217195|ref|ZP_05931476.1| transcription-repair coupling factor [Brucella ceti M13/05/1] gi|261313356|ref|ZP_05952553.1| transcription-repair coupling factor [Brucella pinnipedialis M163/99/10] gi|261318744|ref|ZP_05957941.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94] gi|261320066|ref|ZP_05959263.1| transcription-repair coupling factor [Brucella ceti M644/93/1] gi|261756785|ref|ZP_06000494.1| transcription repair coupling factor [Brucella sp. F5/99] gi|265986542|ref|ZP_06099099.1| transcription-repair coupling factor [Brucella pinnipedialis M292/94/1] gi|225615571|gb|EEH12620.1| transcription-repair coupling factor [Brucella ceti str. Cudo] gi|260922284|gb|EEX88852.1| transcription-repair coupling factor [Brucella ceti M13/05/1] gi|261292756|gb|EEX96252.1| transcription-repair coupling factor [Brucella ceti M644/93/1] gi|261297967|gb|EEY01464.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94] gi|261302382|gb|EEY05879.1| transcription-repair coupling factor [Brucella pinnipedialis M163/99/10] gi|261736769|gb|EEY24765.1| transcription repair coupling factor [Brucella sp. F5/99] gi|264658739|gb|EEZ29000.1| transcription-repair coupling factor [Brucella pinnipedialis M292/94/1] Length = 1170 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|256015355|ref|YP_003105364.1| transcription-repair coupling factor [Brucella microti CCM 4915] gi|255998015|gb|ACU49702.1| transcription-repair coupling factor [Brucella microti CCM 4915] Length = 1122 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 458 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 514 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 542 >gi|225686365|ref|YP_002734337.1| transcription-repair coupling factor [Brucella melitensis ATCC 23457] gi|256262494|ref|ZP_05465026.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2 str. 63/9] gi|225642470|gb|ACO02383.1| transcription-repair coupling factor [Brucella melitensis ATCC 23457] gi|263092231|gb|EEZ16528.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2 str. 63/9] gi|326410736|gb|ADZ67800.1| transcription-repair coupling factor [Brucella melitensis M28] gi|326554029|gb|ADZ88668.1| transcription-repair coupling factor [Brucella melitensis M5-90] Length = 1170 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016] gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1183 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 3 FQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 +K + + F + G+ IV+ HG+G IK+ E+ G K ++ + ++ + L V Sbjct: 500 TNKKGTSKIKSFTELKPGDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECED-KLYV 558 Query: 60 PVGKAIDI 67 PV + + Sbjct: 559 PVEQLDMV 566 >gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168] gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168] Length = 1170 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+++V+ HG+G +K V G ++ V+ + + L VP + Sbjct: 504 QVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGED-KLYVPTDQ 551 >gi|182677886|ref|YP_001832032.1| transcription-repair coupling factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633769|gb|ACB94543.1| transcription-repair coupling factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 1173 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G ++ E AG++ + + + + L +PV + R SE Sbjct: 503 QAGDLVVHVEHGIGRFIGLQTIEAAGVRHDCLELHYAEGT-KLFLPVENLELLS-RYGSE 560 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 V L + G A KR R + + ++ SG LI +A Sbjct: 561 ESDVP--LDRLGGGAWQKR---KARMRRHILEMASG-LIKVA 596 >gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC 19977] gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium abscessus] Length = 1216 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM---------CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K L VP+ + Sbjct: 520 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQL 579 >gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG 3301] gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG 3301] Length = 1171 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 25/122 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + L + G A W R AK+ L+ IA L + +ER Sbjct: 562 GSDAVLDKLGGGA------WQMR----KAKLKK-RLLEIA---GQLIQI-------AAER 600 Query: 137 QL 138 Q+ Sbjct: 601 QM 602 >gi|225016418|ref|ZP_03705610.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum DSM 5476] gi|224950803|gb|EEG32012.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum DSM 5476] Length = 1152 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ +HG+G I + G+ ++ I + + L VPV + + Sbjct: 492 NVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDV-LYVPVTQLDMV 543 >gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM 2032] gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM 2032] Length = 1177 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 Q + + G+ +V+ HG+G + E++G + +F IAF D L VPV + Sbjct: 490 QGQPVQIEQLAEGDVVVHRDHGIGVFQGLVNMEISGQRGDFLQIAFRDDD-KLYVPVDR 547 >gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE] gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE] Length = 1176 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ + G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 486 MPARRRKSIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 546 --RLYIPTDQLEQV 557 >gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] Length = 1161 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 18/127 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G ++ V + + + L +PV + Sbjct: 480 AELSALNPGDLVVHMEHGIGRYDGLEAINVGNSPHDCVQLTYAGGD-KLYIPVENLDVLS 538 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R E+ V AL + G+A KR R +E I E+ L T +Q Sbjct: 539 -RYGHESDGV--ALDRLGGEAWQKR---KARLRE-----------RILEMAGQLMATAAQ 581 Query: 129 PEKSYSE 135 ++ Sbjct: 582 RALRQAD 588 >gi|139439093|ref|ZP_01772545.1| Hypothetical protein COLAER_01552 [Collinsella aerofaciens ATCC 25986] gi|133775440|gb|EBA39260.1| Hypothetical protein COLAER_01552 [Collinsella aerofaciens ATCC 25986] Length = 161 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 18/155 (11%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC--LKVPVGKAIDIGMR 70 F G+H+++P GV T+ ++ ++ + L PV +A + Sbjct: 1 MFSIGQHVIHPGQGVCTVVGFRD----DTPQPMLLLETKQGHAQTILMYPVAQADR--LH 54 Query: 71 KLSEAHFVERALKLVRGKARVKRT--MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 E L T S + ++ G V + + Q Sbjct: 55 AAISQQDAEHLLSHYDELECDTFTERNSSLEETHFKQQLKLGAP-ETVRVAKTMMHRIRQ 113 Query: 129 ------PEKSYSERQLYESALNRMVREIAAVNSIS 157 SY R + + A R + E A ++ Sbjct: 114 AEEADKKPSSYYMR-VLKEAKRRSIEEFAVALGVT 147 >gi|126737697|ref|ZP_01753427.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6] gi|126721090|gb|EBA17794.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6] Length = 1158 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 475 TETQSLSPGDLVVHVDHGIGRYRGLEVVTAAGAAHECILLEYAE-DSKLYLPVENIE--- 530 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 531 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 568 >gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9] gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9] Length = 1158 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ IV+ HG+G + EV G +E I ++ L VPV Sbjct: 487 QVGDPIVHAQHGIGRYQGLVHLEVNGETVEMLQINYE-GDTKLYVPVS 533 >gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM 15272] gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM 15272] Length = 1169 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 M ++++ G+H+V+ HGVG E+ + V G E+ VI + K Sbjct: 486 MPTRRRKQVDPLELSPGDHVVHEQHGVGRYVELVNRVVQGAAREYLVIEYGSSKRGQPAD 545 Query: 56 CLKVPVGKAIDI 67 L +P+ + I Sbjct: 546 RLFLPMDQLDQI 557 >gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus JCSC5402] gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus JCSC5402] Length = 1166 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+++V+ HGVG ++ V + ++ I + L VPV + + Sbjct: 493 QELNIGDYVVHTHHGVGRYLGVETLLVNKLHKDYIKIQYKGTD-QLFVPVDQMSQV 547 >gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20] gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20] Length = 1178 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ V G K ++ IA+ K+ + +PV + I Sbjct: 495 NVGDYVVHINHGIGRYEGLQTITVDGGKQDYLSIAYQKNA-KIFIPVTQLNLI 546 >gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK] gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK] Length = 1198 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ V+ + K L VP+ + Sbjct: 519 GDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGADRLYVPMDSLDQL 574 >gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp. avium ATCC 25291] Length = 1201 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM----- 55 + +++ G+ +V+ HG+G E+ E+ G + E+ V+ + K Sbjct: 487 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTGGGARREYLVLEYASSKRGGGSD 546 Query: 56 CLKVPVGKAIDI 67 L VP+ + Sbjct: 547 KLYVPMDSLDQL 558 >gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii PYR-1] gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii PYR-1] Length = 1212 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ V+ + K L VP+ + Sbjct: 520 GDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQL 575 >gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] Length = 1184 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 17/118 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++++ HG+G I++ V G+ ++ + + + + VP ++K S A+ Sbjct: 508 GDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVDY-SGDVSIFVPTTNLDV--LQKYSSAN 564 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + + G+A W K S +I+E+ RDL ++ ++ Sbjct: 565 GAKPKIDKIGGQA------WK--------KTKSKVRQSISEIARDLVELYAKRQQEQG 608 >gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1159 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 57/137 (41%), Gaps = 33/137 (24%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ AHGVG + EV+G++ ++ +I + + L +P+ Sbjct: 493 QIGDYVVHEAHGVGKYVGTRRLEVSGIQKDYILIEYGGED-KLFLPI------------- 538 Query: 75 AHFVERALKLVRGKARVKRTM------WSR---RAQEYDAKINSGDLIAIAE-VVRDLHR 124 ++ K V+ R + W + RA++ + +AE +++ Sbjct: 539 -EALDSIYKYVQEGNRPPKVNKLNSLDWKKKKARARQ--------SIDDMAEDLIKLYAT 589 Query: 125 TDSQPEKSYSERQLYES 141 ++ ++SE Y+ Sbjct: 590 RENTKGFAFSEDSQYQR 606 >gi|148557853|ref|YP_001257567.1| transcription-repair coupling factor [Brucella ovis ATCC 25840] gi|148369138|gb|ABQ62010.1| transcription-repair coupling factor [Brucella ovis ATCC 25840] Length = 1132 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 468 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 523 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 524 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 552 >gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1] gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1] Length = 1202 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ V+ + K L VP+ + Sbjct: 523 GDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQL 578 >gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7] gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7] Length = 1156 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ +G+G IK E +G+K ++ I++ + L VPV + + R + Sbjct: 491 GDLVVHSMYGIGKFMGIKNIETSGVKKDYITISYAGTDV-LYVPVTQLDLVS-RYVGPGE 548 Query: 77 FVERALKLVRGKARVKRTMWSR 98 L + T W+R Sbjct: 549 DGNIRLNKLN------STEWTR 564 >gi|254465368|ref|ZP_05078779.1| transcription-repair coupling factor [Rhodobacterales bacterium Y4I] gi|206686276|gb|EDZ46758.1| transcription-repair coupling factor [Rhodobacterales bacterium Y4I] Length = 1151 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 470 TETQSLTPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAE-ASKLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E K+ Sbjct: 526 ---LLSKYGHEEGLLDRLGGGAWQAKKAKLKERIREMADKL 563 >gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4] gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4] Length = 1229 Score = 43.2 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ VI + K L VP+ + Sbjct: 544 GDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQL 599 >gi|310657789|ref|YP_003935510.1| transcription-repair coupling factor [Clostridium sticklandii DSM 519] gi|308824567|emb|CBH20605.1| transcription-repair coupling factor [Clostridium sticklandii] Length = 1130 Score = 43.2 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+H+V+ +GVG I+ ++ ++ ++ I + L VP+ + + Sbjct: 492 KAGDHVVHETYGVGKFVGIESKKFDDIRKDYIKIVYSAGDA-LYVPLSQMDKV 543 >gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 701 Score = 43.2 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ +G+G I+++E +K ++ I++ + VP+ + + Sbjct: 66 KIGDIVVHEVYGIGKFLGIEQKENNSVKKDYIKISYKDGD-TIYVPISQMDKV 117 >gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 605] gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd [Mycobacterium tuberculosis KZN 605] Length = 824 Score = 43.2 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ V+ + K+ L VP+ + Sbjct: 111 GDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 169 >gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL 12] gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL 12] Length = 1160 Score = 43.2 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 27/116 (23%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI-------DIGM 69 G+ +V+ HGVG ++ G E ++ + L +PV +IGM Sbjct: 489 GDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGD-RLYLPVENIELLSRFGQEIGM 547 Query: 70 RKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + G A + K+ R +E K+ + AE R L R Sbjct: 548 ------------LDKLGGGAWQAKKAKLKERIREMADKL----IRIAAE--RALRR 585 >gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC 35098] gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC 35098] Length = 1170 Score = 43.2 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G +++ EV ++ +F VI + L +PV + + Sbjct: 504 EIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRASD-RLYIPVDQMNLV 555 >gi|161620641|ref|YP_001594527.1| transcription-repair coupling factor [Brucella canis ATCC 23365] gi|260568134|ref|ZP_05838603.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161337452|gb|ABX63756.1| transcription-repair coupling factor [Brucella canis ATCC 23365] gi|260154799|gb|EEW89880.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 1170 Score = 43.2 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 21/103 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI---GMRKLS 73 G+ +V+ HG+G +K AG + I + D L +PV + G+ Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLSRYGL---- 560 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 561 --EGSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082] gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082] Length = 1173 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980] gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980] Length = 1173 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] Length = 1173 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|157803549|ref|YP_001492098.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel] gi|157784812|gb|ABV73313.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel] Length = 1119 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 20/117 (17%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 458 GEFVVHKDHGIGKFLKLEALEIKGKLHDFLKILYAGND-KLYIPVENIE------VIKKY 510 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + A ++ W +R++ K+ I E+ L + +Q + + Sbjct: 511 GNDNA-----ELDKLGSVSW-QRSKA---KLK----NRIKEIALHLIQIAAQRKLNT 554 >gi|254702954|ref|ZP_05164782.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686] gi|261753561|ref|ZP_05997270.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686] gi|261743314|gb|EEY31240.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686] Length = 1170 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 21/103 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI---GMRKLS 73 G+ +V+ HG+G +K AG + I + D L +PV + G+ Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLSRYGL---- 560 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 561 --EGSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|23500323|ref|NP_699763.1| transcription-repair coupling factor [Brucella suis 1330] gi|23463936|gb|AAN33768.1| transcription-repair coupling factor [Brucella suis 1330] Length = 1122 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 21/103 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI---GMRKLS 73 G+ +V+ HG+G +K AG + I + D L +PV + G+ Sbjct: 458 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLSRYGL---- 512 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 513 --EGSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 542 >gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO] gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15] gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121] gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121] Length = 1208 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ + G + E+ VI + K L VP+ + Sbjct: 523 GDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQL 578 >gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] Length = 1172 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G ++ EV G+ ++ I + + L +PV + I Sbjct: 497 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNED-KLFIPVTQLNLI 548 >gi|163844731|ref|YP_001622386.1| transcription-repair coupling factor [Brucella suis ATCC 23445] gi|163675454|gb|ABY39564.1| transcription-repair coupling factor [Brucella suis ATCC 23445] Length = 1170 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 21/103 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI---GMRKLS 73 G+ +V+ HG+G +K AG + I + D L +PV + G+ Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLSRYGL---- 560 Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 561 --EGSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039] gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679] gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] Length = 1218 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 R G+H+V+ HG+G E+ ++ V G E+ VI + K L VP + + Sbjct: 531 RAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQL 588 >gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis HTCC2597] gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis HTCC2597] Length = 1152 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E V+ + ++ L +PV Sbjct: 476 TEAQSLSPGDLVVHVDHGIGRYLGMEVITAAGAAHECLVLEYAEEA-RLYLPVENIE--- 531 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + E L + G A + K+ R +E ++ + AE R L R Sbjct: 532 ---LLSKYGHEEGLLDRLGGGAWQAKKARLKERIREMADRL----IRIAAE--RALRR 580 >gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 499 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 550 >gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7] gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7] Length = 1173 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 G+++V+ HG+G T ++ E+ G+ ++ I KD+ L +PV Sbjct: 499 NPGDYVVHVNHGIGKYTGMETLEINGIYQDYMSI-IYKDEAKLFIPV 544 >gi|313900859|ref|ZP_07834349.1| transcription-repair coupling factor [Clostridium sp. HGF2] gi|312954279|gb|EFR35957.1| transcription-repair coupling factor [Clostridium sp. HGF2] Length = 1151 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ HG+G I +++ G+ +F IA+ D + L VP+ + +RK Sbjct: 477 QELNVGDYVVHNQHGIGKYLGIVNKKIDGVHKDFLHIAYKGDDV-LLVPLEQFKL--IRK 533 Query: 72 LSEAHFVERALKLVRGKA 89 L + Sbjct: 534 FVSKEGASPKLNKLGSGE 551 >gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21] gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21] Length = 1093 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G+++V+ G+G ++ + G+ ++ + + + L VPV +G+ Sbjct: 430 KAGDYVVHDTQGIGRYLGVETIVIDGIHRDYLKLQYAQGD-KLHVPV---EQVGL 480 >gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus ATCC 53653] gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus ATCC 53653] Length = 1177 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G+ IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 487 MPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 547 --RLYIPTDQLEQI 558 >gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile QCD-66c26] gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP 107932] gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile QCD-76w55] gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile QCD-97b34] gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile QCD-37x79] gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196] gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291] gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196] gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291] Length = 1128 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ GVG T I++ V +K ++ I + L VP+ + + Sbjct: 493 SVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGD-NLYVPIDQMDKV 544 >gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] Length = 1166 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V HG+G ++ E G+K ++ IA+ K L +PV + + Sbjct: 497 KPGDYVVNVNHGIGIYEGMQTIENRGVKQDYITIAYQKGD-KLFIPVTQLDLV 548 >gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile QCD-23m63] gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08] gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07] gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08] gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07] Length = 1128 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ GVG T I++ V +K ++ I + L VP+ + + Sbjct: 493 SVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGD-NLYVPIDQMDKV 544 >gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630] gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile QCD-63q42] gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC 43255] gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase mfd) [Clostridium difficile] Length = 1128 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ GVG T I++ V +K ++ I + L VP+ + + Sbjct: 493 SVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGD-NLYVPIDQMDKV 544 >gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440] gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440] Length = 1216 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 R G+H+V+ HG+G E+ ++ V G E+ VI + K L VP + + Sbjct: 529 RAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQL 586 >gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6] gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39] gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6] gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39] Length = 1169 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ + ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae Hungary19A-6] gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae Hungary19A-6] Length = 1169 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ + ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC0288-04] gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae CDC0288-04] Length = 1169 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ + ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] Length = 1145 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + G+ IV+ +GVG +K + +F V+ + + L VP+ Sbjct: 480 KIGDAIVHENYGVGRYLGLKTKIFDKQSQDFLVLKYA-NNAKLMVPI 525 >gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum WSM2075] gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum WSM2075] Length = 1165 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 25/130 (19%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G ++ E G + I + D L +PV + Sbjct: 491 AEASALSAGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAGDD-RLFLPVENIELLS 549 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R + E L + G A W R AK+ L+ +A L R Sbjct: 550 -RY--GSDTAEATLDKLGGGA------WQSR----KAKLKK-RLLDMA---GQLIRI--- 589 Query: 129 PEKSYSERQL 138 +ERQ+ Sbjct: 590 ----AAERQM 595 >gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae MLV-016] gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae AP200] gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae MLV-016] gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus pneumoniae AP200] Length = 1169 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ + ++ + + + +PV + Sbjct: 492 GDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGD-QISIPVEQI 538 >gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae SP11-BS70] gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae SP11-BS70] Length = 1118 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 G+++V+ HG+G I+ E+ + ++ + + + +PV + Sbjct: 441 GDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGD-QISIPVEQI 487 >gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium OB3b] gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium OB3b] Length = 1173 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ AG + I + L +PV Sbjct: 504 GDLVVHVDHGIGRFIGLETITAAGAPHDCLEIHYAGGD-KLYLPVENIE 551 >gi|118474341|ref|YP_891912.1| transcription-repair coupling factor [Campylobacter fetus subsp. fetus 82-40] gi|118413567|gb|ABK81987.1| transcription-repair coupling factor [Campylobacter fetus subsp. fetus 82-40] Length = 985 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 +TG+ +V+ +G+G ++ V G K EF VIA+ + L +PV I R ++ Sbjct: 351 KTGDFVVHSDYGIGKFLGLELITVLGSKKEFVVIAYQNND-KLLLPVEHLNMID-RYIAG 408 Query: 75 AHFV 78 + V Sbjct: 409 SGAV 412 >gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM 9941] gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM 9941] Length = 1054 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+ +V+ G+G + +EV G+ ++ + + L VP + Sbjct: 399 KPGDLVVHAVQGIGRFEGLVSKEVLGVTRDYMQVTYRGGD-TLFVPYEQME 448 >gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum Rt17-B1] Length = 923 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 11/84 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +G+ TEIK+ E EF V+ F L VP+ + L + Sbjct: 282 QVGDLVVHKRYGIARFTEIKKVETISGAKEFLVLNFA--DSTLYVPIERI------DLID 333 Query: 75 AHFVERALKLVRGKARVKRTMWSR 98 + + + +K+ WS+ Sbjct: 334 KYIGDDVNVKL---DSLKKGTWSK 354 >gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] Length = 1148 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%) Query: 6 KRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 KR + R+G + GE +V+ HGV + + GM E+ ++ + L VP Sbjct: 472 KRPSARKGVVLDIKPGEFVVHIDHGVALFSGVSHLNRDGMDKEYLILNYAGGD-KLYVPT 530 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQE 102 + + R + R+ W +RA+E Sbjct: 531 DQMDRVN-RFIGSGDEPPSL-------HRLGTQEW-QRAKE 562 >gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] Length = 1175 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G++IV+ HG+G ++++ + G ++ VI + K+ + Sbjct: 493 NPGDYIVHKNHGIGQFLKLEKINITGESRDYLVIKYLDGKISV 535 >gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1170 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 18/120 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 ++G+++V+ HGVG +I++ V ++ ++ L+V + +G R + Sbjct: 488 KSGDYVVHRNHGVGKFLKIEKFIVNNESRDYLLVQ--YSDGTLRVAADQLSSLG-RYRNS 544 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + R ++ W++ A+E K +I+ V DL + ++ S Sbjct: 545 SDKSPRI-------NKLGGNTWTK-AKERAKK-------SISRVAIDLIKLYAERSNSQG 589 >gi|322379145|ref|ZP_08053542.1| transcription-repair coupling factor [Helicobacter suis HS1] gi|322380425|ref|ZP_08054627.1| transcription-repair coupling factor [Helicobacter suis HS5] gi|321147136|gb|EFX41834.1| transcription-repair coupling factor [Helicobacter suis HS5] gi|321148441|gb|EFX42944.1| transcription-repair coupling factor [Helicobacter suis HS1] Length = 986 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ +GVG + +Q + G +F + + + M L +PV + Sbjct: 359 SPGDFVVHENYGVGLFKGLVQQSIFGSVRDFIALEYQNEDM-LLLPVENLHLV 410 >gi|193213782|ref|YP_001994981.1| transcription-repair coupling factor [Chloroherpeton thalassium ATCC 35110] gi|193087259|gb|ACF12534.1| transcription-repair coupling factor [Chloroherpeton thalassium ATCC 35110] Length = 1110 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 24/127 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 + + G++IV+ +G+G +++ +V G + E ++ +DK L V ++ + Sbjct: 413 RALKVGDYIVHEDYGIGVFMGMEKTKVGGSEQECVLVEYDKGD-KLFV---NIQNLHLLS 468 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + V +++ W Q KI L IA R+L Sbjct: 469 KYSSAEGK-----VPTLSKLGSNKW----QANKEKIKK-RLKDIA---RNLIAI------ 509 Query: 132 SYSERQL 138 Y++R++ Sbjct: 510 -YAKRKM 515 >gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7] Length = 1178 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Query: 12 QGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 + F+ G+++V+ HGVG I+ EV G+ ++ I Sbjct: 500 RSFKELSVGDYVVHEGHGVGIYRGIENVEVDGVAKDYIKIE 540 >gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1179 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ E G K ++ IA+ + + +PV + I Sbjct: 494 NVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTIAY-QQNAKIFIPVTQLNLI 545 >gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1179 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ E G K ++ IA+ + + +PV + I Sbjct: 494 NVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTIAY-QQNAKIFIPVTQLNLI 545 >gi|261884253|ref|ZP_06008292.1| transcription-repair coupling factor [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 217 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +G+G ++ V G K EF VIA+ + L +PV I R ++ Sbjct: 60 KIGDFVVHSDYGIGKFLGLELITVLGSKKEFVVIAYQNND-KLLLPVEHLNMID-RYIAG 117 Query: 75 AHFV 78 + V Sbjct: 118 SGAV 121 >gi|83593061|ref|YP_426813.1| transcription-repair coupling factor [Rhodospirillum rubrum ATCC 11170] gi|83575975|gb|ABC22526.1| Transcription-repair coupling factor [Rhodospirillum rubrum ATCC 11170] Length = 1177 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 15/105 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+ +V+ HG+G ++ G + + + + L VPV + R Sbjct: 502 ALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNN-RLYVPVENIEVLS-RYG 559 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117 SE V+ L + G A W R AK+ + +AE Sbjct: 560 SEQAGVQ--LDKLGGVA------WQAR----KAKLKQ-RIRDMAE 591 >gi|296436295|gb|ADH18469.1| transcription-repair coupling factor [Chlamydia trachomatis G/9768] gi|296438154|gb|ADH20315.1| transcription-repair coupling factor [Chlamydia trachomatis G/11074] gi|297140655|gb|ADH97413.1| transcription-repair coupling factor [Chlamydia trachomatis G/9301] Length = 1079 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKTPD-LHHLNG------AKW-RRSRELSEK 515 >gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2] gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2] Length = 1168 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 27/163 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K E G + I + L +PV + R SE Sbjct: 500 GDLVVHVDHGIGRFIGLKTVEAMGAPHDCLEIHYAGGD-KLFLPVENLELLS-RYGSEDT 557 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + L + G A W R + K I E+ +L + +Q + + + Sbjct: 558 EAQ--LDKLGGGA------WQAR-KARMKK-------RIREMASELIKIAAQRQLGEAPK 601 Query: 137 -----QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 LY+ R E + + AI+ + +L+S Sbjct: 602 LVPAMGLYDEFRARFPYE----ETDDQDAAIDAVLDDLASGHP 640 >gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens FD-1] Length = 1160 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G I++ E+ G+ ++ I + L +PV + + Sbjct: 491 GDLVVHSGHGIGRFIGIRKLELEGVTKDYITIQYAGTD-KLYIPVTQLDMV 540 >gi|300023171|ref|YP_003755782.1| transcription-repair coupling factor [Hyphomicrobium denitrificans ATCC 51888] gi|299524992|gb|ADJ23461.1| transcription-repair coupling factor [Hyphomicrobium denitrificans ATCC 51888] Length = 1161 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ G + + + L +PV Sbjct: 484 TEATALSVGDLVVHSDHGIGRFAGLQTITALGAPHDCLELHYAGGD-KLFLPVENIE 539 >gi|94266121|ref|ZP_01289836.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1] gi|93453318|gb|EAT03758.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1] Length = 1162 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 25/126 (19%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG-MRKLS 73 G+ +V+ HG+G + E+ G+ ++ I + L +PV + +G + L+ Sbjct: 480 NPGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGAD-KLYIPVDQLNSVGKYKGLA 538 Query: 74 EAH-FVERALKL--VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 + +++ + + +VK+ +W +V RDL + ++ + Sbjct: 539 DQEPTLDKLGDNSWLATRQKVKKAVW--------------------QVARDLLKLYAKRQ 578 Query: 131 KSYSER 136 + R Sbjct: 579 LAEGNR 584 >gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii ACS-065-V-Col13] Length = 1167 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G +++ EV + +F VI + L VPV + + Sbjct: 501 EIGDYVVHENNGIGLYKGLEKIEVNNTEKDFVVIEYRGTD-KLFVPVDQMNLV 552 >gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus ATCC 33331] Length = 1176 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ + G+ IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 486 MPARRRKSIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 546 --RLYIPTDQLEQV 557 >gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074] gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074] gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074] Length = 1177 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ +G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 487 MPTRRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGD 546 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 547 --RLYIPTDQLEQV 558 >gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans DMS010] gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans DMS010] Length = 1101 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG ++ ++ + E+ + + K L VPV I Sbjct: 434 SVGDAVVHEDHGVGRYLGLQTLDIGDVTAEYVTLEYAKGD-KLYVPVASLDLI 485 >gi|224418280|ref|ZP_03656286.1| transcription-repair coupling factor [Helicobacter canadensis MIT 98-5491] gi|313141813|ref|ZP_07804006.1| transcription-repair coupling factor [Helicobacter canadensis MIT 98-5491] gi|313130844|gb|EFR48461.1| transcription-repair coupling factor [Helicobacter canadensis MIT 98-5491] Length = 1004 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 +TG+++V+ +GV I + + G +F + + + L +PV I R +++ Sbjct: 374 KTGDYVVHIDYGVAVFNGITQANIFGATRDFIELKYLGED-KLLLPVENLDRID-RYIAD 431 >gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str. Hartford] gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str. Hartford] Length = 1121 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE +V+ HG+G +++ E+ G +F I + + L +PV I Sbjct: 460 GEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYIPVENIEVI 509 >gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh 114] gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh 114] Length = 1154 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ IV+ HG+G ++ AG E ++ + + L +PV Sbjct: 471 TETESLSPGDLIVHVDHGIGRYKGLEVVTAAGAAHECILLEYAESS-KLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E K+ Sbjct: 527 ---LLSKYGHEEGLLDRLGGGAWQAKKARLKERIREMADKL 564 >gi|253827604|ref|ZP_04870489.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT 98-5491] gi|253511010|gb|EES89669.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT 98-5491] Length = 967 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 +TG+++V+ +GV I + + G +F + + + L +PV I R +++ Sbjct: 337 KTGDYVVHIDYGVAVFNGITQANIFGATRDFIELKYLGED-KLLLPVENLDRID-RYIAD 394 >gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552] gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552] Length = 1141 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+++V+ +G+G IK EV G+ ++ +A+ D L +PV + + RK Sbjct: 477 QELEIGDYVVHDNYGIGQYLGIKTLEVQGVHRDYLYVAYAGDD-TLYIPVEQFNLV--RK 533 Query: 72 LSEAHF 77 S + Sbjct: 534 YSSSEG 539 >gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836] gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836] Length = 1212 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GM---KLEFFVIAFDKDKM- 55 M ++K+ G+ +V+ HGVG E+ ++ V G E+ VI F K Sbjct: 517 MPSRRKKTIDPLELGPGDFVVHEQHGVGRYVEMMQRTVGTGQQKATREYVVIEFAPSKRG 576 Query: 56 ----CLKVPVGKAIDI 67 L VP + + Sbjct: 577 QPGDRLYVPTDQLDQV 592 >gi|224438472|ref|ZP_03659396.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] gi|313144905|ref|ZP_07807098.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] gi|313129936|gb|EFR47553.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG 18818] Length = 1005 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T +K GE++V+ +GVG IK+ +VAG+ +F IA+ + L +PV Sbjct: 352 TKHKKPTLKLNEISQGEYVVHNDYGVGIFQGIKQAQVAGVVRDFIEIAYQGED-KLLLPV 410 Query: 62 GKAIDIGMRKLSEAHFVE 79 I R ++++ + Sbjct: 411 ENLNMID-RYVADSGQIP 427 >gi|32265957|ref|NP_859989.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC 51449] gi|32262006|gb|AAP77055.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC 51449] Length = 1001 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE++V+ +G+G IK+ ++ G+ +F I++ + L +PV I R ++++ Sbjct: 364 GEYVVHSEYGIGIFEGIKQTQIVGVVRDFIEISYQGED-KLLLPVENLNMIE-RYVADSG 421 Query: 77 FVE 79 + Sbjct: 422 QIP 424 >gi|331089329|ref|ZP_08338230.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405510|gb|EGG85042.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium 3_1_46FAA] Length = 712 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ I + + + L +PV + I Sbjct: 446 KPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAEGGV-LYIPVAQMDLI 497 >gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] Length = 1115 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ I + + + L +PV + I Sbjct: 446 KPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAEGGV-LYIPVAQMDLI 497 >gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2150] gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium HTCC2150] Length = 1157 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 Q G+ IV+ HGVG ++ AG E + + + L +PV Sbjct: 474 TEAQSLTVGDLIVHIEHGVGIYNGLETITAAGAPHECIALEYARGD-RLYLPVVNIE 529 >gi|254475764|ref|ZP_05089150.1| transcription-repair coupling factor [Ruegeria sp. R11] gi|214030007|gb|EEB70842.1| transcription-repair coupling factor [Ruegeria sp. R11] Length = 1153 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + + L +PV Sbjct: 470 TETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAE-QAKLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 563 >gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099] gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099] Length = 1165 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 25/130 (19%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A TG+ +V+ HG+G ++ E G + I + D L +PV + Sbjct: 491 AEASALSTGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAGDD-RLFLPVENIELLS 549 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R + E L + G A W R AK+ L+ +A L R Sbjct: 550 -RY--GSDSAEATLDKLGGGA------WQSR----KAKLKR-RLLDMA---GQLIRI--- 589 Query: 129 PEKSYSERQL 138 +ERQ+ Sbjct: 590 ----AAERQM 595 >gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46] gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46] Length = 1203 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 19/120 (15%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+ +V+ HG+G T +K AG + + + L +PV + Sbjct: 530 QALSPGDLVVHADHGIGRFTGLKTVTAAGAPHDC--LEIQYNGGLLLLPVENIE---LLT 584 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + L + G A W R AK+ I E+ L + ++ Sbjct: 585 RYGSEEADVPLDKLGGGA------WQAR----KAKLK----RRILEMAGALIKVAAERFL 630 >gi|150396613|ref|YP_001327080.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419] gi|150028128|gb|ABR60245.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419] Length = 1171 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G G ++V+ HG+G ++ E AG + + D L +PV + Sbjct: 498 AEVTGLDEGSYVVHAEHGIGRFVGLQTIEAAGAPHDCLEL-VYADDAKLFLPVENIELLS 556 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 R + + L + G A W R AK+ +G LI IA Sbjct: 557 -RY--GSEGTDAVLDKLGGVA------WQAR----KAKLKKRLLDMAGGLIRIA 597 >gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] Length = 1188 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G + E G K ++ IA+ + K + VPV + Sbjct: 512 KTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNLV 563 >gi|313898413|ref|ZP_07831950.1| hypothetical protein HMPREF9406_1313 [Clostridium sp. HGF2] gi|312956795|gb|EFR38426.1| hypothetical protein HMPREF9406_1313 [Clostridium sp. HGF2] Length = 155 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 20/157 (12%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 E + +P G+ +T I ++E + VI D +P +G+R L E+ Sbjct: 6 EKVFHPNLGICDVTGIDKKE------KRMVIT-AADGSTCSIPFESLPRVGVRNLMESDE 58 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL-----IAIAEVVRDLHRT--DSQPE 130 + +K + + S +I + + ++ L+ + + Sbjct: 59 ADLIMKKLFTPKQESSLPAS----LTLMQIQQSIVDYKLEQQVQLLIGLLYWKYAEGKKG 114 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 Y E + E++ V +S+ + +E Sbjct: 115 IRYQE--CLSRIEGVLCEELSFVLDLSKDLLVERLED 149 >gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str. Rustic] gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str. Rustic] Length = 1122 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIE------VIKKY 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ W +R++ K + IA L + ++ + + S Sbjct: 514 GNDNA-----EFDKLGSVAW-QRSKAKLKK----RIKEIAL---HLIQIAAKRKLNSS 558 >gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] Length = 1189 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G + E G K ++ IA+ + K + VPV + Sbjct: 513 KTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNLV 564 >gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] Length = 1188 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G + E G K ++ IA+ + K + VPV + Sbjct: 512 KTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNLV 563 >gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus 307] gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus 307] Length = 1177 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI--- 65 Q G+ +V+ HGVG ++ AG E V+ + + L +PV Sbjct: 500 TETQSLTLGDLVVHVDHGVGRYLGLEVITAAGAAHECLVLEYAESS-RLYLPVENIELLS 558 Query: 66 ----DIGMRK 71 ++G+ Sbjct: 559 RYGHEVGLLD 568 >gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC 367] gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus brevis ATCC 367] Length = 1180 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ V G+ ++ I + +D L +PV + I Sbjct: 497 KPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDY-QDNAQLFIPVTQLNLI 548 >gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242] gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242] Length = 1181 Score = 42.4 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ AG + + + L +PV Sbjct: 512 GDLVVHVDHGIGRFIGLETITAAGAPHDCLELHYAGGD-KLYLPVENIE 559 >gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM 20548] gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM 20548] Length = 1170 Score = 42.4 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G +++ EV ++ +F VI + L VPV + I Sbjct: 503 IGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTD-KLFVPVDQMNLI 553 >gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica IFM 10152] gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica IFM 10152] Length = 1205 Score = 42.4 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V G + E+ VI + K L VP+ + Sbjct: 511 GDMVVHDQHGIGRFVEMIERTVGGARREYLVIEYAPSKRGQPGDRLFVPMESLDQL 566 >gi|309774569|ref|ZP_07669595.1| hypothetical protein HMPREF0983_00033 [Erysipelotrichaceae bacterium 3_1_53] gi|308917684|gb|EFP63398.1| hypothetical protein HMPREF0983_00033 [Erysipelotrichaceae bacterium 3_1_53] Length = 155 Score = 42.4 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 16/155 (10%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 E + +P G+ +T I ++E + VI D +P +G+R L E+ Sbjct: 6 EKVFHPNLGICDVTGIDKKE------KRMVIT-AADGSTCSIPFKSLPLVGVRNLMESKE 58 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL-----IAIAEVVRDLHRTDSQPEKS 132 + L+ + S +I + + ++ L+ + +K Sbjct: 59 ADLILQELFEPQHASSLPAS----LTLMQIQQSIVDYKMEQQVQLLIGLLYWKYVEGKKG 114 Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167 ++ + E++ V +S + +E Sbjct: 115 IRYQECLNRIEGVLCEELSFVLDLSMDNLVERLEN 149 >gi|170748065|ref|YP_001754325.1| transcription-repair coupling factor [Methylobacterium radiotolerans JCM 2831] gi|170654587|gb|ACB23642.1| transcription-repair coupling factor [Methylobacterium radiotolerans JCM 2831] Length = 1198 Score = 42.0 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 19/118 (16%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+ +V+ HG+G +K AG + + + L +PV + Sbjct: 524 QALQPGDLVVHADHGIGRFVGLKTIHAAGAPHDCLELQYTGG--LLLLPVENIE---LLT 578 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + E AL + G A W R AK+ I E+ +L + +Q Sbjct: 579 RYGSEDSEVALDRLGGGA------WQAR----KAKMK----RRILEMAGELIKVAAQR 622 >gi|256059228|ref|ZP_05449434.1| transcription-repair coupling factor [Brucella neotomae 5K33] gi|261323178|ref|ZP_05962375.1| transcription-repair coupling factor [Brucella neotomae 5K33] gi|261299158|gb|EEY02655.1| transcription-repair coupling factor [Brucella neotomae 5K33] Length = 1170 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGALHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5] gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5] Length = 1122 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIE------VIKKY 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ W +R++ K + IA L + ++ + + S Sbjct: 514 GNDNA-----ELDKLGSVSW-QRSKAKLKK----RIKEIAL---HLIQIAAKRKLNSS 558 >gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter tengcongensis MB4] gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase [Thermoanaerobacter tengcongensis MB4] Length = 1169 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G ++V+ +G+G I++ +V G+ ++ I + + L VPV + + Sbjct: 502 EVGSYVVHVNYGIGKYEGIEKIKVDGVIRDYLKIVYAGGDV-LFVPVEQLDLV 553 >gi|256111504|ref|ZP_05452518.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str. Ether] gi|265993002|ref|ZP_06105559.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str. Ether] gi|262763872|gb|EEZ09904.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str. Ether] Length = 1170 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHHCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 GSDAVLDKLGGGA------WQAR----KAKLKK-RLLEIA 590 >gi|153010961|ref|YP_001372175.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC 49188] gi|151562849|gb|ABS16346.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC 49188] Length = 1170 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG + I + D L +PV + R + Sbjct: 506 GDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAGDD-RLFLPVENIELLS-RY--GSE 561 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A W R AK+ L+ IA Sbjct: 562 SSDAVLDKLGGGA------WQMR----KAKLKK-RLLEIA 590 >gi|260433551|ref|ZP_05787522.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis ITI-1157] gi|260417379|gb|EEX10638.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis ITI-1157] Length = 1152 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ G E ++ + + L +PV Sbjct: 471 TETQSLSPGDLVVHVDHGIGRYMGMEVVTALGAAHECLLLEYAEGA-KLYLPVENIE--- 526 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E ++ Sbjct: 527 ---LLSKYGHEEGLLDKLGGGAWQAKKAKLKERIREMADRL 564 >gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM 17093] gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM 17093] Length = 1006 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+++++P HG+G ++ ++V G+ ++ ++ + L +PV + Sbjct: 352 GDYLIHPDHGIGRFMGLEPRQVLGVTRDYLILQYAGAG-KLYLPVEQ 397 >gi|255321495|ref|ZP_05362653.1| transcription-repair coupling factor [Campylobacter showae RM3277] gi|255301351|gb|EET80610.1| transcription-repair coupling factor [Campylobacter showae RM3277] Length = 985 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +G+G T +++ V G EF VI + + L +PV I R ++ Sbjct: 345 KAGDYVVHEEYGIGKFTGLEKLTVLGRTREFVVIVYQNED-KLLLPVEHLNLID-RYVAG 402 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA---EVVR 120 + + L + GKA + RA+ + I S +I++A E++R Sbjct: 403 SGSI-AVLDRL-GKANFAKIKEKVRAKLFV--IAS-KIISLAAQRELIR 446 >gi|149192400|ref|ZP_01870600.1| transcription-repair coupling factor [Vibrio shilonii AK1] gi|148833765|gb|EDL50802.1| transcription-repair coupling factor [Vibrio shilonii AK1] Length = 702 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV IG Sbjct: 30 KPGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVASLNLIG 82 >gi|193212321|ref|YP_001998274.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB 8327] gi|193085798|gb|ACF11074.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB 8327] Length = 1097 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 24/127 (18%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+++V+ +GVG ++ +V + E ++ ++ L V +I + Sbjct: 400 QRLKVGDYVVHEDYGVGVFRSLETIQVGDSEQECVLVEYEGGD-QLYV---NVQNINL-- 453 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ + WS + ++ K+ D+ A+++R Sbjct: 454 -LSKYTASE--GSLPNLSKLGSSKWSAKKEKVRKKLR--DI--AAKLIRI---------- 496 Query: 132 SYSERQL 138 Y+ER++ Sbjct: 497 -YAERKM 502 >gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 170 str. F0386] gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 170 str. F0386] Length = 1079 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 25/137 (18%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCLKVPV 61 +R G+ +V+ HGVG E+ + V G E+ VI + Sbjct: 364 RRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGARSSATREYLVIEYAPS-------- 415 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSRRAQEYDAKINSGDLIAIAE 117 K G R L +++ K V G + M W AK S A+ E Sbjct: 416 -KRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADW--------AKTKSKARKAVRE 466 Query: 118 VVRDLHRTDSQPEKSYS 134 + +L R + + Sbjct: 467 IAGELVRLYAARAATTG 483 >gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989] gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989] Length = 1131 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 +++V+ +G+G I +++ G L++ + ++ L VP+ + + RK Sbjct: 465 EPNDYVVHEQYGIGQYVGITTRKIKGKTLDYLHVIYNGGD-ELYVPLSQFQLV--RKYVS 521 Query: 75 AHFV 78 V Sbjct: 522 KEGV 525 >gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211] gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211] Length = 1042 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 G G+++++P HG+G ++ + V G+ ++ + + L +P+ Sbjct: 361 GLHVGDYLIHPEHGIGQFLGLESRTVLGVARDYLHLEYRSGA-KLYLPIE 409 >gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str. Iowa] gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii] gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str. Iowa] Length = 1122 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE +V+ HG+G +++ E+ G +F I + + L +PV I Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIEVI 510 >gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 1122 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE +V+ HG+G +++ E+ G +F I + + L +PV I Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIEVI 510 >gi|325971064|ref|YP_004247255.1| transcription-repair coupling factor [Spirochaeta sp. Buddy] gi|324026302|gb|ADY13061.1| transcription-repair coupling factor [Spirochaeta sp. Buddy] Length = 1090 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 15/113 (13%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 T Q + + F G+++V+ +GVG +I + +F IA+ ++M L Sbjct: 411 TLQHTQSSPLDSFVDLNEGDYVVHVNYGVGQFVKIDRVSSFDRERDFIKIAYADNEM-LY 469 Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMW---SRRAQEYDAKIN 108 VP+ +A + R + + + K ++ W +A++ + Sbjct: 470 VPIEQANLVQ-RYIGSDTGLPK-------KDKLGGQGWENKKAKARKNAEDLA 514 >gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase [Azospirillum sp. B510] gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase [Azospirillum sp. B510] Length = 1171 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G ++ +V G + I ++ L VPV Sbjct: 459 GDIVVHMDHGIGRYDGLETLDVTGAPHDCLRIIYEGGD-KLYVPVENIE 506 >gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246] gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246] Length = 1122 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIE------VIKKY 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ W +R++ K + IA L + ++ + + S Sbjct: 514 GNDNA-----ELDKLGSVSW-QRSKAKLKK----RIKEIAL---HLIQIAAKRKLNSS 558 >gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM 44233] gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM 44233] Length = 1192 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 + G+++V+ HG+G ++ ++ G E+ V+ + K L VP + Sbjct: 504 ALKPGDYVVHSQHGIGKYVDMVQRTSGGATREYLVVEYAPSKRNQPGDRLFVPTDALDQL 563 >gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces viridochromogenes DSM 40736] gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces viridochromogenes DSM 40736] Length = 1177 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ V+ + D Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRVVQGATREYLVVEYAPAKRGQPGD 545 Query: 54 KMCLKVPVGKAIDI 67 L +P + I Sbjct: 546 --RLYIPTDQLEQI 557 >gi|163736366|ref|ZP_02143785.1| transcription-repair coupling factor [Phaeobacter gallaeciensis BS107] gi|161390236|gb|EDQ14586.1| transcription-repair coupling factor [Phaeobacter gallaeciensis BS107] Length = 1155 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 470 TETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAE-HSKLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 563 >gi|163741099|ref|ZP_02148491.1| transcription-repair coupling factor [Phaeobacter gallaeciensis 2.10] gi|161385452|gb|EDQ09829.1| transcription-repair coupling factor [Phaeobacter gallaeciensis 2.10] Length = 1155 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 470 TETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAE-HSKLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 563 >gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str. Malish 7] gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str. Malish 7] Length = 1122 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 20/118 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ HG+G +++ E+ G +F I + + L +PV + + + Sbjct: 461 GEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYIPVESIE------VIKKY 513 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + A ++ W +R++ K + IA L + ++ + + S Sbjct: 514 GNDNA-----ELDKLGSVSW-QRSKAKLKK----RIKEIAL---HLIQIAAKRKLNSS 558 >gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101] Length = 1185 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 18/133 (13%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V Sbjct: 480 RKAASRTVDPNKMRPGDFVVHRNHGIGKFIKLEKLAISGESRDYLVVQYADG--LLRVAA 537 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + +G R + R+ T WS+ A+E K A+ +V D Sbjct: 538 DQLGSLG-RYRATTEQPPDL-------NRMGGTAWSK-AKERARK-------AVRKVALD 581 Query: 122 LHRTDSQPEKSYS 134 L + ++ ++ Sbjct: 582 LVKLYAERHQAAG 594 >gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ] Length = 1165 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +++ HGVG ++ ++ K ++ V+ K + VPV K I Sbjct: 499 KKGDFVIHSEHGVGVYDGLESLDIGDSKSDYIVL-IYKGNDKVYVPVYKMNLI 550 >gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] Length = 1218 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ VAG + E+ VI + K L VP+ + Sbjct: 519 GDLVVHDEHGIGKFVEMIERTVAGARREYLVIEYAPSKRGQPGDKLFVPMESLDQL 574 >gi|291277211|ref|YP_003516983.1| transcription-repair coupling factor [Helicobacter mustelae 12198] gi|290964405|emb|CBG40255.1| transcription-repair coupling factor [Helicobacter mustelae 12198] Length = 991 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 +QK GE++V+ +G+G I++ ++ G +F I + L +PV Sbjct: 346 RKKQKPRIAINELNVGEYVVHIQYGIGVFGGIEQAKILGAVRDFIRIDYQGGDS-LLLPV 404 Query: 62 GKAIDIGMRKLSEAHFVE 79 I R ++ + V Sbjct: 405 ENLNLID-RYVAGSSGVP 421 >gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] Length = 1172 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + + L +PV + I Sbjct: 497 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNED-KLFIPVTQLNLI 548 >gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] Length = 1172 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G ++ EV G+ ++ I + + L +PV + I Sbjct: 497 KAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNED-KLFIPVTQLNLI 548 >gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14] Length = 1118 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 T++ K+ + G+++V+ HG+G I++ EV + ++ I++ + L +P Sbjct: 431 TYEGKKIQEFAELKPGDYVVHENHGLGIYQGIEKVEVDAVTRDYMKISYADGGI-LYIPA 489 Query: 62 GKAIDI 67 + I Sbjct: 490 TQMDLI 495 >gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] Length = 1128 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 + ++ + A+ F G+ +V+ +G+G I AG + ++ + + +M + Sbjct: 449 SVKRSKTAVIDTFVELNPGDLVVHVNYGIGRFLGIDRITAAGTERDYIKLEYADQEM-IF 507 Query: 59 VPVGKAIDI 67 +P+ + + Sbjct: 508 IPIEQVNLV 516 >gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. novicida GA99-3549] gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella novicida GA99-3549] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis FSC198] gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis MA00-2987] gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis SCHU S4] gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis FSC198] gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. tularensis NE061598] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG] gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica FSC022] gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica FSC022] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica LVS] gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis subsp. holarctica OSU18] gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. holarctica 257] gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella tularensis subsp. holarctica LVS] gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis subsp. holarctica OSU18] gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella tularensis subsp. holarctica 257] gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1141 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica URFT1] gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica URFT1] Length = 1141 Score = 42.0 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida U112] gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida FTE] gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112] gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp. novicida FTE] Length = 1141 Score = 42.0 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413] gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413] Length = 1188 Score = 42.0 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + R G+++V+ +HG+G +++ + ++ V+ + + + Sbjct: 506 RQAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYADGLLRV---- 561 Query: 62 GKAIDIG 68 A +G Sbjct: 562 -AADQVG 567 >gi|90419666|ref|ZP_01227576.1| transcription-repair coupling factor [Aurantimonas manganoxydans SI85-9A1] gi|90336603|gb|EAS50344.1| transcription-repair coupling factor [Aurantimonas manganoxydans SI85-9A1] Length = 1121 Score = 42.0 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 14/100 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G G+ +V+ HG+G +K E AG + + + D L +PV + Sbjct: 443 AEASGLDEGDIVVHVDHGIGRFVGLKTIEAAGAPHDCLELRYQGDD-RLFLPVENIELLS 501 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 R E L + G A W R AK+ Sbjct: 502 -RY--GGEGSEAMLDKLGGGA------WQAR----KAKLK 528 >gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp. tularensis WY96-3418] Length = 1141 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548] gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548] Length = 1141 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|114704427|ref|ZP_01437335.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi HTCC2506] gi|114539212|gb|EAU42332.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi HTCC2506] Length = 1172 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G G+ +V+ HG+G +K+ E AG + + + D L +PV + Sbjct: 494 SEVSGLDEGDIVVHVDHGIGRFVGLKQIEAAGAPHDCLELRYAGDD-RLFLPVENIELLS 552 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R E L + G A W R AK+ L+ +A+ L R ++ Sbjct: 553 -RY--GGEGTEATLDRLGGGA------WQAR----KAKLKK-RLLDMAD---GLIRVAAE 595 Query: 129 PE 130 Sbjct: 596 RA 597 >gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320] gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320] Length = 1151 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ D L VPV I Sbjct: 477 SPGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLILSYAGDD-KLYVPVSSLHLI 528 >gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58] gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58] Length = 1169 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 20/132 (15%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + + KR F G+ +V+ HG+G + + V+ + + + Sbjct: 480 LVRRAKRKKNADAFLQELATLTPGDLVVHRDHGIGRYDGLTQIPVSKAAHDCVALEYAGG 539 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GD 111 L VPV + R SE V L + G+A W RR + +I G+ Sbjct: 540 D-KLYVPVENLEVLS-RYGSETDGVS--LDRLGGEA------WQRRKAKMKERIREIAGE 589 Query: 112 LIAIAEVVRDLH 123 L+ A R L Sbjct: 590 LLKTAA-ARALR 600 >gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida 3523] Length = 1142 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906] gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906] Length = 1151 Score = 41.7 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ D L VPV I Sbjct: 477 SPGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLILSYAGDD-KLYVPVSSLHLI 528 >gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3] gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3] Length = 1158 Score = 41.7 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ V+ + L VPV I R Sbjct: 487 KVGQPIVHLEHGVARYQGLETLDTGGLVAEYLVLEYSGGD-KLYVPVSSLHLIS-RYSVG 544 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 E L + + WS+ ++ KI Sbjct: 545 PDE-EANLNKLGNE------TWSKAKRKAIEKIR 571 >gi|29840634|ref|NP_829740.1| transcription-repair coupling factor [Chlamydophila caviae GPIC] gi|29834984|gb|AAP05618.1| transcription-repair coupling factor [Chlamydophila caviae GPIC] Length = 1085 Score = 41.7 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 436 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 493 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G + W RR+++ K Sbjct: 494 SDKAPD-LHNLNG------SKW-RRSRDLSEK 517 >gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] Length = 1194 Score = 41.7 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R + G+ +V+ HG+G ++++ ++G ++ V+ + L+V Sbjct: 489 RKAASRTVDPNKMQPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYADG--ILRVAA 546 Query: 62 GKAIDIG 68 + +G Sbjct: 547 DQLGSLG 553 >gi|266625229|ref|ZP_06118164.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862869|gb|EFC95167.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 146 Score = 41.7 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 11/146 (7%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE--VAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGM 69 F +++V+ HG+ I I + +A ++ + K + PV + + Sbjct: 1 MFSVNDYVVFGNHGICVIKAIGPLDLGIAERGRLYYTLEPLYTQKNTIYTPVDSEKNS-L 59 Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R+ + + V RR + Y + D + ++++ L+ Q Sbjct: 60 RRAITREEALELIDRIPQVETVWVPDEKRREERYREIMRQNDCMGWMQIIKTLY-LKKQK 118 Query: 130 EKSYSERQL------YESALNRMVRE 149 + + + A + + E Sbjct: 119 RLAEGRKNTARDELYLKLAEDFLYGE 144 >gi|154175141|ref|YP_001408519.1| transcription-repair coupling factor [Campylobacter curvus 525.92] gi|112803058|gb|EAU00402.1| transcription-repair coupling factor [Campylobacter curvus 525.92] Length = 981 Score = 41.7 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + +++V+ +G+G +++ V G EF VIA+ D L +PV I R +++ Sbjct: 346 KINDYVVHEDYGIGRFLGLEKITVLGATKEFVVIAYQNDD-KLLLPVEHLNLID-RYIAQ 403 Query: 75 AHFVERALKLV 85 V L + Sbjct: 404 NGSV-AVLDRL 413 >gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans 2-40] gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans 2-40] Length = 1153 Score = 41.7 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G +V+ HGVG ++ E G K EF V+ + ++ L VPV Sbjct: 485 KIGAPVVHIEHGVGRYLGLQTIEFDGQKDEFLVLEYA-NEAKLYVPVAN 532 >gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM 43160] gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM 43160] Length = 1179 Score = 41.7 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 11/78 (14%) Query: 1 MTFQQKRDAMRQG------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 M K A R+ + G+ +V+ HG+G E+ + V G + ++ ++ + K Sbjct: 480 MRDAVKMPARRRNAVDLVQLQPGDLVVHEHHGIGRYIEMVSRTVNGGQRDYLIVEYAPSK 539 Query: 55 M-----CLKVPVGKAIDI 67 L VP + Sbjct: 540 RNQPPDRLFVPTDALDQL 557 >gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis F0359] gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis F0359] Length = 1092 Score = 41.7 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+++V+ HG+G IK E G+ ++ I + + L VP + Sbjct: 427 GDYVVHDTHGIGKYVGIKTIETDGVHKDYLEIHYSGHDV-LYVPTDQIQ 474 >gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] Length = 1070 Score = 41.7 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-------DKD 53 M ++++ G++IV+ HGVG E+ ++ V G E+ ++ + D Sbjct: 380 MPTRRRKTIDPLTLEAGDYIVHEQHGVGRYLEMVQRTVQGATREYLLVEYAPAKRGQPGD 439 Query: 54 KMCLKVPVGKAIDI 67 L +P + + Sbjct: 440 --RLYIPTDQLEQV 451 >gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4] gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4] Length = 1153 Score = 41.7 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GMK E+ + + +++ L VPV IG Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNEAKLYVPVSSLNLIG 533 >gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] Length = 1163 Score = 41.7 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A Q G+ +V+ HG+G ++ V + + + + L +PV + Sbjct: 479 AELQALSRGDLVVHVEHGIGKYLGLEPVPVGKSQHDCVTLEYKGGD-KLYIPVENLEVLS 537 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN--SGDLIAIA 116 R S V L + G+A W +R + +I +G+L+ +A Sbjct: 538 -RYGSSEETVP--LDRLGGEA------WQKRRAKLKERITAIAGELMKVA 578 >gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1139 Score = 41.7 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 474 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 527 >gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1] gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1] Length = 1195 Score = 41.7 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 25/142 (17%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + +QKR F G+ +V+ HG+G + VA + + + Sbjct: 509 LVRRQKRKKSADAFLAELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDCVALTYAGG 568 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113 L VPV + R +E V+ L + G A W R +I Sbjct: 569 D-KLYVPVENIDVLS-RYGAENEGVQ--LDKLGGVA------WQARKARMKERIR----- 613 Query: 114 AIAEVVRDLHRTDSQPEKSYSE 135 E+ +L +T ++ +E Sbjct: 614 ---EIAGELIKTAAERALRPAE 632 >gi|86138342|ref|ZP_01056916.1| transcription-repair coupling factor [Roseobacter sp. MED193] gi|85824867|gb|EAQ45068.1| transcription-repair coupling factor [Roseobacter sp. MED193] Length = 1153 Score = 41.7 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 470 TETQSLTPGDLVVHVDHGIGRYQGMEVVRAAGAAHECLLLEYAEES-KLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 L + + L + G A + K+ R +E K+ + AE R L R Sbjct: 526 ---LLSKYGHDEGLLDRLGGGAWQAKKAKLKERIREMADKL----IRIAAE--RALRR 574 >gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum SL003B-26A1] gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum SL003B-26A1] Length = 1166 Score = 41.7 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HG+G +K E G + + + L +PV + Sbjct: 488 TEATALSEGDLVVHVDHGIGRFVGLKTIEAVGAPHDCLELQYAGGD-KLYLPVENIELL- 545 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R SE + L + G A W R + K ++ IA+ L RT + Sbjct: 546 TRYGSEETEAQ--LDRLGGGA------WQAR-KARMKK----RILEIAD---GLIRTAAA 589 Query: 129 PEK 131 Sbjct: 590 RAL 592 >gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703] gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703] Length = 1147 Score = 41.7 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 476 RPGQPVVHLEHGVGRYVGLTTLEAGGVKAEYLILHYAGED-KLYVPVSSLHLI 527 >gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] Length = 1295 Score = 41.7 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 R G+++V+ HG+G ++++ + E+ VI + + + A +G+ Sbjct: 616 RPGDYVVHKNHGIGQFLKLEKLSINNETREYLVIKYADGLLRV-----AADQLGV 665 >gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16] gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16] Length = 1164 Score = 41.7 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 22/140 (15%) Query: 4 QQKRDAMRQGFR------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 Q+K RQ + G+ +V+ HGVG + + G++ ++ IA+ + L Sbjct: 481 QKKETTNRQKLKSYADLSPGDLVVHEHHGVGRYVGMVKMPADGIEKDYVKIAYAGSDV-L 539 Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINSGDLIA 114 VP + I + + + KL +++ T W R RA++ + G + Sbjct: 540 YVPATQLDLIS-KYIGGGEDAQETKKL----SKLGGTDWERAKTRAKKAVQDLAKGLIEL 594 Query: 115 IAEVVRDLHRTDSQPEKSYS 134 A+ QP ++S Sbjct: 595 YAQ-------RQRQPGYAFS 607 >gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805] gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805] Length = 1180 Score = 41.7 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V Sbjct: 475 RKAASRTVDPNKMRPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYADG--ILRVAA 532 Query: 62 GKAIDIG 68 + +G Sbjct: 533 DQLGSLG 539 >gi|115524796|ref|YP_781707.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisA53] gi|115518743|gb|ABJ06727.1| transcription-repair coupling factor [Rhodopseudomonas palustris BisA53] Length = 1179 Score = 41.7 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 18/116 (15%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 TG+ +V+ HG+G ++ +V G + + + ++ L +PV + R S+ Sbjct: 503 TGDIVVHVEHGIGRFVGLQTLQVGGAPHDCLELHYA-NETKLFLPVENIELLS-RYGSDG 560 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 VE L + G + W R AK+ I E+ +L + ++ + Sbjct: 561 ANVE--LDKLGG------SGWQAR----KAKLK----NRIREMAGELIKIAAERQL 600 >gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] Length = 1169 Score = 41.7 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G+++V+ HG+G + + G++ ++ + + + L VP +GM Sbjct: 504 KAGDYVVHVNHGIGRYLGMVSLNIGGLQKDYLQLQYAGED-KLYVPTD---QVGM 554 >gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704] gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704] Length = 1114 Score = 41.7 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ I++ + L +P + I Sbjct: 442 KVGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAQGG-NLYIPATQLDLI 493 >gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424] gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424] Length = 1185 Score = 41.7 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF--------VIAFDKDKM 55 Q G++IV+ +HG+G I+ EV G+ +F VI D + M Sbjct: 480 QELNIGDYIVHISHGIGLYEGIENIEVNGVHKDFLKIVYDGGDVIYVDINNM 531 >gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803] gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803] Length = 1180 Score = 41.7 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V Sbjct: 475 RKAASRTVDPNKMRPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYADG--ILRVAA 532 Query: 62 GKAIDIG 68 + +G Sbjct: 533 DQLGSLG 539 >gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58] gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58] Length = 1070 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 18/115 (15%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G ++++ ++ ++ VI + D L VP +A I R + Sbjct: 420 PGETVVHLHNGIGKFVGVEKKPNHLNIETDYLVIEYA-DHAKLYVPSDQAYLIS-RYVGA 477 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + + G + W R++E K L+A AE L + ++Q Sbjct: 478 SDTPPE-FHNLNG------SKWK-RSRELTEK----SLVAYAE---KLLQLEAQR 517 >gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708] gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708] Length = 1166 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 R G+ +V+ +HG+G E++ + ++ VI + + + A +G Sbjct: 497 RPGDFVVHRSHGIGKFVELESLTINNETRDYLVIQYADGLLKV-----AADKVG 545 >gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] Length = 1153 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 27/54 (50%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + R + G+++V+ +HG+G +++ ++G E+ V+ + + + Sbjct: 472 AASKQVDRDRLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYADGLLRV 525 >gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] Length = 1153 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 27/54 (50%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + R + G+++V+ +HG+G +++ ++G E+ V+ + + + Sbjct: 472 AASKQVDRDRLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYADGLLRV 525 >gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] Length = 1184 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R R G+++V+ HG+G ++++ ++G ++ V+ + + + Sbjct: 479 RKAASRTVDPNKMRPGDYVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYADGLLRV 534 >gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] Length = 1189 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 24/56 (42%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R + G+ +V+ HG+G +++ + G + ++ V+ + + + Sbjct: 484 RKAASRTVDPNKMQPGDFVVHRNHGIGRFLRLEKLAIGGEERDYLVVQYADGLLRV 539 >gi|218960874|ref|YP_001740649.1| putative transcription-repair coupling factor [Candidatus Cloacamonas acidaminovorans] gi|167729531|emb|CAO80443.1| putative transcription-repair coupling factor [Candidatus Cloacamonas acidaminovorans] Length = 1127 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + G+++V+ HG+G +K + G +E V+ + D + VP Sbjct: 460 KPGDYVVHIDHGIGVFEGLKIIRLDGSDVECLVLRYANDD-RVYVPT 505 >gi|21673485|ref|NP_661550.1| transcription-repair coupling factor [Chlorobium tepidum TLS] gi|21646591|gb|AAM71892.1| transcription-repair coupling factor [Chlorobium tepidum TLS] Length = 1113 Score = 41.7 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 24/167 (14%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q + G+++V+ +G+G ++ +V + E ++ ++ L V +I + Sbjct: 422 QRLKVGDYVVHEDYGIGVFRSLETIQVGDSEQECVLVEYEGGD-QLYV---NVQNINL-- 475 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + +++ + WS + + K+ D+ A+++R + P Sbjct: 476 -LSKYTASE--GSLPNLSKLGSSKWSAKKERVRKKLR--DI--AAKLIRVYAKRKMTPGF 528 Query: 132 SYSERQLYESALNRMVREIAAVNSISEP----EAINLIEVNLSSKSS 174 ++ + RE A E +AI ++ ++ S S Sbjct: 529 AFG-------PDSIFQREFEASFMFEETPDQLKAIQEVKKDMQSPSP 568 >gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130] gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130] Length = 1169 Score = 41.7 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 43/171 (25%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+ + E G + + + + L +PV + R + Sbjct: 505 GDVVVHVDHGIARFHGLVTIEAMGAPHDCLELRYHNED-KLFLPVENIELLS-RYGNSDT 562 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 V+ L + G W R AK+ + Sbjct: 563 EVQ--LDRLGG------ANWQAR----KAKLK---------------------------K 583 Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187 ++ E A + IAA + + + I L + ++K +++Q A Sbjct: 584 RILEMAGQLIA--IAAARQLKKADPIQLPDGVYGEFAAKFPYEETDDQLNA 632 >gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827] gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827] Length = 1148 Score = 41.7 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 477 RPGQPVVHIEHGVGRYQGLTTLEAGGIKAEYLILTYAGND-KLYVPVSSLHLI 528 >gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis audaxviator MP104C] gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis audaxviator MP104C] Length = 1176 Score = 41.7 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G I E+ +K E+ +I + + L VP + + Sbjct: 503 PGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLINYLGED-KLYVPTDQLGLV 553 >gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C] gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C] Length = 1120 Score = 41.7 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE IV+ HG+G +++ E+ G +F I + + L +PV I Sbjct: 459 GELIVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYIPVENIEVI 508 >gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str. Wilmington] gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi] gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II) [Rickettsia typhi str. Wilmington] Length = 1120 Score = 41.7 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE +V+ HG+G +++ E+ G +F I + + L VPV I Sbjct: 459 GEFVVHKDHGIGQFLKLEAFEIQGKLHDFLKILYSGND-KLYVPVENIEVI 508 >gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM 1313] Length = 1178 Score = 41.7 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ V +K ++ I + L VP + I Sbjct: 509 NVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGD-YLYVPTNQLDLI 560 >gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str. MIT 9202] gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str. MIT 9202] Length = 1169 Score = 41.3 bits (96), Expect = 0.057, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 492 NPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISV 534 >gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20] gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20] Length = 1178 Score = 41.3 bits (96), Expect = 0.057, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ V +K ++ I + L VP + I Sbjct: 509 NVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGD-YLYVPTNQLDLI 560 >gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] Length = 1165 Score = 41.3 bits (96), Expect = 0.057, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+++V+ HG+G + EV G+ ++ I + L +PV + + Sbjct: 496 KTGDYVVHVNHGIGKFMGMTTMEVDGVHQDYMTIQYKGSG-QLFIPVTQLNLV 547 >gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1139 Score = 41.3 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 474 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 527 >gi|157165294|ref|YP_001467043.1| transcription-repair coupling factor [Campylobacter concisus 13826] gi|112800411|gb|EAT97755.1| transcription-repair coupling factor [Campylobacter concisus 13826] Length = 981 Score = 41.3 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + +++V+ +G+G +++ +V G EF VIA+ D L +PV Sbjct: 346 KVNDYVVHEDYGIGRFLGLEKIKVLGATKEFVVIAYQNDD-KLLLPVE 392 >gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9312] gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str. MIT 9312] Length = 1174 Score = 41.3 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 492 SPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISV 534 >gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222] gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222] Length = 1153 Score = 41.3 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G ++ E GMK E+ + + L VPV IG Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQH-DAKLYVPVASLNLIG 533 >gi|157826877|ref|YP_001495941.1| transcription-repair coupling factor [Rickettsia bellii OSU 85-389] gi|157802181|gb|ABV78904.1| Transcription-repair coupling factor [Rickettsia bellii OSU 85-389] Length = 1120 Score = 41.3 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE IV+ HG+G +++ E+ G +F I + + L +PV I Sbjct: 459 GELIVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYIPVENIEVI 508 >gi|304440475|ref|ZP_07400363.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371041|gb|EFM24659.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1148 Score = 41.3 bits (96), Expect = 0.059, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G K ++ G++ ++ +++ D L +PV I Sbjct: 490 KIGDYVVHEIHGIGVYNGTKTMDIQGIRRDYLELSYQGDD-RLFLPVENLDVI 541 >gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] Length = 1178 Score = 41.3 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ V +K ++ I + L VP + I Sbjct: 509 NVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGD-YLYVPTNQLDLI 560 >gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp. holarctica FSC200] Length = 847 Score = 41.3 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 181 KPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 234 >gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2] gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2] Length = 1159 Score = 41.3 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 G+ IV+ HGVG ++ + G + EF +I + L VPV Sbjct: 493 GQPIVHFDHGVGRFLGLETMTIQGEEHEFLMIQYA-GDAKLYVPV 536 >gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis ATCC 15703] gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis ATCC 15703] Length = 1188 Score = 41.3 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GM---KLEFFVIAFDKDKM----- 55 +++ +TG+++V+ HG+G E++++ + G E+ VI + K Sbjct: 498 RRKAIDLMELKTGDYVVHEQHGIGRFVEMRQRTIGKGENQTTREYLVIEYAPSKRGAPAD 557 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 558 KLFIPTDQLDQV 569 >gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1141 Score = 41.3 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ V G E+ + + + L VP I Sbjct: 483 KPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDVI 534 >gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9215] gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9215] Length = 1169 Score = 41.3 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 492 SPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISV 534 >gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6578] Length = 1127 Score = 41.3 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 16/115 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G IK +V + ++ + + ++ + VP+ + + R + Sbjct: 465 SPGDYVVHVHHGIGRFLGIKRMKVGENERDYLHLEYAGEE-YVFVPIEQVNLVQ-RYIGS 522 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + R ++ + W +R +E K + +A+ R L + Sbjct: 523 SDAAPRL-------DKLGSSSWQKR-KERVKK----SVEDLAK--RLLAIYSRRK 563 >gi|57167968|ref|ZP_00367107.1| transcription-repair coupling factor [Campylobacter coli RM2228] gi|57020342|gb|EAL57011.1| transcription-repair coupling factor [Campylobacter coli RM2228] Length = 978 Score = 41.3 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +++K + + + G+ IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 YKRKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] Length = 1025 Score = 41.3 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 17/121 (14%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 ++ + +V+ +GV ++E G + + ++ F +K L VP + I Sbjct: 367 KERLTENQLVVHEDYGVAVYRGVEEVASGGERFDSLILEFA-NKQRLLVPFMQIYKID-- 423 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L E E L +RG R ++ K + E V++L R ++ E Sbjct: 424 PLPEEATAETVLDSLRGT----------RWKKAVEKTRE----RVREEVKNLVRLYARRE 469 Query: 131 K 131 Sbjct: 470 L 470 >gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748] gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748] Length = 1098 Score = 41.3 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ I + L +P + Sbjct: 427 PGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIDYAGSD-KLFLPANNLDQL 477 >gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6192] gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6192] Length = 1127 Score = 41.3 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 16/115 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G IK +V + ++ + + ++ + VP+ + + R + Sbjct: 465 SPGDYVVHVHHGIGRFLGIKRMKVGENERDYLHLEYAGEE-YVFVPIEQVNLVQ-RYIGS 522 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 + R ++ + W +R +E K + +A+ R L + Sbjct: 523 SDAAPRL-------DKLGSSSWQKR-KERVKK----SVEDLAK--RLLAIYSRRK 563 >gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C] gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83] gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83] gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C] Length = 1169 Score = 41.3 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G G ++V+ HG+G ++ E AG + + D L +PV + Sbjct: 496 AEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLEL-VYADDAKLFLPVENIELLS 554 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 R + + L + G A W R AK+ +G LI IA Sbjct: 555 -RY--GSEGTDAVLDKLGGVA------WQAR----KAKLKKRLLDMAGGLIRIA 595 >gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] Length = 1171 Score = 41.3 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G G ++V+ HG+G ++ E AG + + D L +PV + Sbjct: 498 AEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLEL-VYADDAKLFLPVENIELLS 556 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 R + + L + G A W R AK+ +G LI IA Sbjct: 557 -RY--GSEGTDAVLDKLGGVA------WQAR----KAKLKKRLLDMAGGLIRIA 597 >gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. AS9601] gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. AS9601] Length = 1170 Score = 41.3 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 492 SPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISV 534 >gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans PD1222] gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans PD1222] Length = 1154 Score = 41.3 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 14/94 (14%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HG+G T ++ + G+ + + + L +PV L Sbjct: 485 PGDLVVHVEHGIGRYTGLETVKALGVPHDCVALEYAGGD-RLYLPVENIE------LLSR 537 Query: 76 HFVER-ALKLVRGKARVKRTMWSRRAQEYDAKIN 108 + E L + G A W R +I Sbjct: 538 YGHEEGLLDKLGGGA------WQARKARLKERIK 565 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 41.3 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 17/108 (15%) Query: 5 QKRDAMRQGF------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 +K++ Q F G IV+ HG+G + EV+G + + + D L Sbjct: 488 RKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA-DNAKLF 546 Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 VPV I R +E V L + G A W R + K Sbjct: 547 VPVENIDLIS-RYSTEITTVT--LDKLGGSA------WKTR-KANLKK 584 >gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] Length = 1159 Score = 41.3 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ D L VPV I Sbjct: 489 PGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGDD-KLYVPVSSLHLI 539 >gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179] gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179] Length = 1147 Score = 41.3 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + GM E+ V+ + D+ L VPV I R + Sbjct: 475 KIGQPVVHLEHGVGRYDGLTTLDAGGMVAEYLVLRYA-DEAKLYVPVSSLHLIS-RYVGG 532 Query: 75 AHF 77 Sbjct: 533 GEE 535 >gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] Length = 1186 Score = 41.3 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 G+++V+ +G+G I++ EV G ++ VI + + Sbjct: 508 SVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGG 547 >gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus BP-1] gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus BP-1] Length = 1142 Score = 41.3 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 4 QQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 +++R A +Q + G+++V+ HG+G ++ + E+ V+ + + + Sbjct: 460 KRRRAAAKQVDLNKLQPGDYVVHRQHGIGQFLRLETLTINNETREYLVLQYADGILRV 517 >gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B] gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B] Length = 1151 Score = 41.3 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 470 TEAQSLSPGDLVVHVDHGIGRYIGLEVVTAAGAAHECLLLEYAEES-KLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHDEGLLDKLGGGAWQAKKARLKERIREMADRL 563 >gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591] gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591] Length = 1150 Score = 41.3 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 479 RPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGED-KLYVPVSSLHLI 530 >gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27] gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27] Length = 1104 Score = 41.3 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ V +E VI ++ L VP+ + I Sbjct: 437 ALKPGDYVVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGD-RLNVPLYRIDQI 490 >gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185] gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185] Length = 1148 Score = 41.3 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +VY HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVYLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937] gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937] Length = 1149 Score = 41.3 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYSGLTTLEAGGIKAEYLILHYAGED-KLYVPVSSLHLI 529 >gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] Length = 1177 Score = 41.3 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ +HG+G I++ V +K ++ I + +D L VP + Sbjct: 512 NIGDFVVHQSHGIGKYIGIEQLVVENIKKDYLKIQY-QDDAFLYVPTNQLD 561 >gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] Length = 1162 Score = 41.3 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G +K +V G + + + + L +PV + Sbjct: 488 AEASALTPGDLVVHIDHGIGRYDGLKTLDVQGAPHDTLELQY-GGEAKLYLPVENIDLL- 545 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117 R ++A V+ L + G A R RA+E ++ G + AE Sbjct: 546 TRYGADAENVQ--LDRLGGAAWQAR---KARAKERLREMADGLIRIAAE 589 >gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1185 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G IV+ HG+G + EV+G + + + D L VPV I Sbjct: 505 GSIIVHAEHGIGRFIRLSSIEVSGTSHDCLELHYA-DNAKLFVPVENIDLI 554 >gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum S5] gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum S5] Length = 1048 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 14/129 (10%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 MT AM R G+H+V+ +GVG I+ AG + +F I + + + L VP Sbjct: 385 MTTYLTDLAM---LRPGDHVVHVEYGVGIFRGIENLSAAGTRGDFLKIEYARGDI-LYVP 440 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 K + +K + + L + K+ KR RA++ I + A Sbjct: 441 NDKFHLV--QKYIGSDTGDPKLDRMGSKSWEKR---KSRARKSVEDIAQSLMQTDA---- 491 Query: 121 DLHRTDSQP 129 L R + Sbjct: 492 -LRRRHKEH 499 >gi|255349143|ref|ZP_05381150.1| transcription-repair coupling factor [Chlamydia trachomatis 70] gi|255503680|ref|ZP_05382070.1| transcription-repair coupling factor [Chlamydia trachomatis 70s] gi|255507360|ref|ZP_05382999.1| transcription-repair coupling factor [Chlamydia trachomatis D(s)2923] gi|289525792|emb|CBJ15273.1| transcription-repair coupling factor [Chlamydia trachomatis Sweden2] gi|296435368|gb|ADH17546.1| transcription-repair coupling factor [Chlamydia trachomatis E/150] gi|296439085|gb|ADH21238.1| transcription-repair coupling factor [Chlamydia trachomatis E/11023] Length = 1079 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDA 105 + L + G W RR++E Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSE 514 >gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM 15897] gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM 15897] Length = 1150 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +G+G I+ V G+ ++ IA+ + + L VPV + +RK S Sbjct: 479 KVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHIAYKGNDI-LYVPVEQFQL--IRKYSS 535 Query: 75 AHF 77 Sbjct: 536 RDG 538 >gi|166154965|ref|YP_001653220.1| transcription-repair coupling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930953|emb|CAP06515.1| transcription-repair coupling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1079 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDA 105 + L + G W RR++E Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSE 514 >gi|166154090|ref|YP_001654208.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu] gi|301335295|ref|ZP_07223539.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1] gi|165930078|emb|CAP03561.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu] Length = 1079 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDA 105 + L + G W RR++E Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSE 514 >gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS 571] gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K E G + I + L +PV + R SE Sbjct: 502 GDLVVHVDHGIGRFIGLKAIEAMGAPHDCLEIHYAGGD-KLFLPVENLELL-TRYGSEDT 559 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + G W R +I G+LI IA R L + Sbjct: 560 EAQ--LDKLGGGG------WQARKARMKKRIREMAGELIKIAA-ARQLSEAPRLVPAAG- 609 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 LY+ R E + + AI+ + +LSS Sbjct: 610 ---LYDEFRARFPYE----ETDDQEAAISAVLDDLSSGHP 642 >gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 1154 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HG+G T ++ EV G+ E+ + + +++ L VPV Sbjct: 482 KPGQPVVHIDHGIGRYTGLQTLEVGGITTEYVTLEY-QNEAKLYVPVA 528 >gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] Length = 1193 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HG+G ++++ ++G ++ VI + L V + +G Sbjct: 503 GDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIQYLDG--TLSVAADQLGSLG 552 >gi|34557604|ref|NP_907419.1| transcription-repair coupling factor [Wolinella succinogenes DSM 1740] gi|34483321|emb|CAE10319.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Wolinella succinogenes] Length = 994 Score = 41.3 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+++V+ +G+G I ++ V G +F ++A+ + L +PV I R +++ Sbjct: 359 RVGDYVVHKDYGIGIFKGIIQERVLGALRDFILLAYQGED-RLLLPVENLDYID-RYVAD 416 Query: 75 AHFVERA-------LKLVRGKARVK 92 + + ++ K R K Sbjct: 417 SGSIPSVDRLGKGSFAKLKEKIRTK 441 >gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus asymbiotica] Length = 1148 Score = 40.9 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++++ D L VPV I Sbjct: 477 RPGQPVVHLEHGVGRYQGLTSLEAGGIKAEYLILSYAGDD-KLYVPVSSLHLI 528 >gi|326772339|ref|ZP_08231624.1| transcription-repair coupling factor [Actinomyces viscosus C505] gi|326638472|gb|EGE39373.1| transcription-repair coupling factor [Actinomyces viscosus C505] Length = 778 Score = 40.9 bits (95), Expect = 0.077, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 25/141 (17%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCL 57 + +R G+ +V+ HGVG E+ + V G E+ VI + Sbjct: 59 ARRTRRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGPRSSATREYLVIEYAPS---- 114 Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSRRAQEYDAKINSGDLI 113 K G R L +++ K V G + M W AK S Sbjct: 115 -----KRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADW--------AKTKSKARK 161 Query: 114 AIAEVVRDLHRTDSQPEKSYS 134 A+ E+ +L R + + Sbjct: 162 AVREIAGELVRLYAARAATTG 182 >gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] Length = 1202 Score = 40.9 bits (95), Expect = 0.077, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ HG+G +++ V G++ +F +I + L +P+ + I R + Sbjct: 541 KEGDYVVHKEHGIGLYQGLQKLSVGGIENDFLLINYQSGD-KLYLPIDRLDQIS-RYIGP 598 Query: 75 AHFVERA 81 +V + Sbjct: 599 EGYVPKV 605 >gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii DSM 6725] gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii DSM 6725] Length = 1141 Score = 40.9 bits (95), Expect = 0.078, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ V G E+ + + + L VP I Sbjct: 483 KPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDVI 534 >gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum SCRI1043] gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum SCRI1043] Length = 1149 Score = 40.9 bits (95), Expect = 0.078, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYAGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQE 102 A L + G+A WSR R + Sbjct: 536 ADE-NAPLHKLGGEA------WSRARQKA 557 >gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] Length = 1193 Score = 40.9 bits (95), Expect = 0.078, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 18/118 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++++ ++G ++ VI + L V + +G R S + Sbjct: 503 GDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIEYLDG--TLSVAADQLGSLG-RYRSTSE 559 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + R+ T W ++ +E K+ + +V DL + ++ ++ Sbjct: 560 SPPKL-------NRMGGTTW-QKVKERTRKL-------VRKVAMDLVKLYAERLQAPG 602 >gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341] gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341] Length = 1183 Score = 40.9 bits (95), Expect = 0.078, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF--------VIAFDKDKM 55 Q G++IV+ +HG+G I+ EV G+ +F +I D + M Sbjct: 480 QELNVGDYIVHVSHGIGLYEGIENVEVGGVYKDFLKIVYDGGDIIYVDINNM 531 >gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040] gi|99037470|gb|ABF64082.1| transcription-repair coupling factor [Ruegeria sp. TM1040] Length = 1149 Score = 40.9 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 470 TEAQSLSPGDLVVHVDHGIGRYIGLEVVTAAGAAHECLLLEYAEES-KLYLPVENIE--- 525 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E ++ Sbjct: 526 ---LLSKYGHDEGLLDKLGGGAWQAKKARLKERIREMADRL 563 >gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans ATCC 25259] gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans ATCC 25259] Length = 1146 Score = 40.9 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ +GVG + ++ EF + + K L VPV I Sbjct: 467 KPGDPVVHAQYGVGQYLGLATMDLGDGDTEFLQLEYAKGD-KLYVPVANLHLI 518 >gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379] gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379] Length = 1183 Score = 40.9 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF--------VIAFDKDKM 55 Q G++IV+ +HG+G I+ EV G+ +F +I D + M Sbjct: 480 QELNIGDYIVHVSHGIGLYEGIENVEVGGVFKDFLKIVYDGGDIIYVDINNM 531 >gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9] gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9] Length = 1202 Score = 40.9 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 R G+ +V+ +HG+G +++ + ++ VI + + + A +G Sbjct: 509 RAGDFVVHRSHGIGKFVKLESLTINDETRDYLVIQYADGVLRV-----AADQVG 557 >gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] Length = 1179 Score = 40.9 bits (95), Expect = 0.085, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ HG+G I++ E G+ ++ + + + L +P + G++K + Sbjct: 508 SIGDYVVHEDHGLGIYRGIEKIEQDGIIKDYLKVEYADNG-NLYLPATRLD--GIQKYAG 564 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-PEKSY 133 A + L + G+ W+R ++ G + IA+ + L+ Q Y Sbjct: 565 ADAKKPKLNRLGGE------QWNR----TKTRVK-GAVKEIAKELVQLYAARQQTHGFQY 613 Query: 134 SE 135 E Sbjct: 614 GE 615 >gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM 12168] gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM 12168] Length = 1185 Score = 40.9 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G I+ + G + ++ + +D +++ + +P+ + + R + Sbjct: 522 NPGDYVVHVNYGIGLFKGIERVKAMGNERDYIKLEYDDEEI-VFIPIEQVNLVQ-RYIGN 579 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 R R+ W R K+ + IA+ + DL+ Sbjct: 580 EGCAPRL-------DRLGSKSWENR----KNKVKK-SVEDIAQKLIDLYSRRK 620 >gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU 11154] gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU 11154] Length = 1174 Score = 40.9 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G ++ G K ++ IA+ K+ + +PV + I Sbjct: 492 NVGDYVVHVNHGIGRYEGLQTMTSDGGKQDYLSIAYQKNA-KIFIPVTQLNLI 543 >gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii CS-505] gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii CS-505] Length = 1171 Score = 40.9 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 R G+ +V+ +HG+G +++ + ++ VI + + + A +G Sbjct: 509 RAGDFVVHRSHGIGKFVKLESLTINDETRDYLVIQYADGVLRV-----AADQVG 557 >gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586] gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586] Length = 1150 Score = 40.9 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 479 RPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGED-KLYVPVSSLHLI 530 >gi|325067341|ref|ZP_08126014.1| transcription-repair coupling factor [Actinomyces oris K20] Length = 619 Score = 40.9 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 25/141 (17%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCL 57 + +R G+ +V+ HGVG E+ + V G E+ VI + Sbjct: 1 ARRTRRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGARSSATREYLVIEYAPS---- 56 Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM----WSRRAQEYDAKINSGDLI 113 K G R L +++ K V G + M W AK S Sbjct: 57 -----KRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADW--------AKTKSKARK 103 Query: 114 AIAEVVRDLHRTDSQPEKSYS 134 A+ E+ +L R + + Sbjct: 104 AVREIAGELVRLYAARAATTG 124 >gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster bacterium] gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase) [uncultured SUP05 cluster bacterium] Length = 1143 Score = 40.9 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ +GVG +K Q +F ++ + + L VP+ I Sbjct: 478 QIGDPIVHENYGVGRYLGLKTQTFDAQTQDFLMLEYA-NGSKLMVPMTSLNLI 529 >gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC 49957] gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC 49957] Length = 1174 Score = 40.9 bits (95), Expect = 0.090, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 20/114 (17%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ V+G + + +D L +PV + R S++ Sbjct: 503 GDLVVHQDHGIGRYDGLETLAVSGAPHDCLRLLYDGGD-KLFLPVENIELLS-RFGSDSA 560 Query: 77 FVERALKLVRGKARVKRTMW-SRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 V AL + G T W +R+A+ IA++ L R ++ Sbjct: 561 GV--ALDKLGG------TSWQNRKAKAKQ---------RIADMAGQLIRIAAER 597 >gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163] gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163] Length = 1150 Score = 40.9 bits (95), Expect = 0.090, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 479 RPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYAGG 536 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQE 102 A L + G+A WSR R + Sbjct: 537 ADE-NAPLHKLGGEA------WSRARQKA 558 >gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM 20284] gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM 20284] Length = 1165 Score = 40.9 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + EV G+ ++ I + L +PV + + Sbjct: 496 KPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYLTIQYQGSG-QLFIPVTQLNLV 547 >gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4] gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4] Length = 1165 Score = 40.9 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + EV G+ ++ I + L +PV + + Sbjct: 496 KPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYLTIQYQGSG-QLFIPVTQLNLV 547 >gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL B-59395] gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL B-59395] Length = 1193 Score = 40.9 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V+G + E+ VI + K L VP+ + Sbjct: 514 GDLVVHDQHGIGKFVEMIERTVSGARREYLVIEYAPGKRGQPGDRLYVPMDALDQL 569 >gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea phototrophica DFL-43] gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea phototrophica DFL-43] Length = 1168 Score = 40.9 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G G ++V+ HG+G ++ E AG + + L +PV + Sbjct: 497 SEVSGLDEGSYVVHAEHGIGQFIGLRTIEAAGAPHACLELHYA-GDAKLFLPVENIELL- 554 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R S++ V+ L + G A W R AK+ L+ +AE L R ++ Sbjct: 555 TRYGSDSAEVQ--LDRLGGVA------WQSR----KAKLKK-RLLDMAE---GLIRIAAE 598 Query: 129 PE 130 Sbjct: 599 RH 600 >gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis SKA53] gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis SKA53] Length = 1148 Score = 40.9 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+ +V+ HGVG ++ G E +IA+ ++ L +PV Sbjct: 470 SEANSLAPGDLVVHVDHGVGRFEGMEVVTALGAAHECLLIAYAEET-KLYLPVENIE 525 >gi|325293164|ref|YP_004279028.1| transcription-repair coupling factor [Agrobacterium sp. H13-3] gi|325061017|gb|ADY64708.1| transcription-repair coupling factor [Agrobacterium sp. H13-3] Length = 1165 Score = 40.5 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 16/109 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G G +V+ HG+G ++ E AG + + D L +PV + R Sbjct: 497 GLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYA-DDAKLFLPVENIDLLS-RY- 553 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVVR 120 + E L + G A W R AK+ L+ +A E++R Sbjct: 554 -GSDAAEATLDKLGGGA------WQMR----KAKLKK-RLLDMADELIR 590 >gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] Length = 1165 Score = 40.5 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 16/109 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G G +V+ HG+G ++ E AG + + D L +PV + R Sbjct: 497 GLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYA-DDAKLFLPVENIDLLS-RY- 553 Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVVR 120 + E L + G A W R AK+ L+ +A E++R Sbjct: 554 -GSDAAEATLDKLGGGA------WQMR----KAKLKK-RLLDMADELIR 590 >gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01] gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01] Length = 1153 Score = 40.5 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O] gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O] Length = 1153 Score = 40.5 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+K E+ ++ + +++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLETLEAGGIKAEYVMLEY-QNEAKLYVPVASLNLI 532 >gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC 27755] gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC 27755] Length = 1114 Score = 40.5 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ I++ K L +P + I Sbjct: 442 KPGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAKGG-NLYIPATQLDLI 493 >gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6] gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016] gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6] gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016] Length = 1153 Score = 40.5 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+K E+ ++ + +++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLETLEAGGIKAEYVMLEY-QNEAKLYVPVASLNLI 532 >gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116] gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116] Length = 1153 Score = 40.5 bits (94), Expect = 0.100, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|323342263|ref|ZP_08082495.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463375|gb|EFY08569.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1138 Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 14/106 (13%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77 +++V+ +G+G I +E+ G+ +F I + L VP+ + + RK Sbjct: 475 DYVVHRQYGIGKYMGITTKEIEGIHKDFMRILYRDGD-ELFVPLEQFNLV--RKFMSREA 531 Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 L + + W Q+ +I D+ +A+ + L+ Sbjct: 532 ASVRLSKLGT------STW----QKNKERIKQ-DVADVADKLVTLY 566 >gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus nematophila ATCC 19061] gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus nematophila ATCC 19061] Length = 1148 Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + A Sbjct: 479 GQPVVHLDHGVGRYQGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYVGGAE 536 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + G+A WS+ Q+ K+ Sbjct: 537 E-SAPLHKLGGEA------WSKARQKAAEKVR 561 >gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814] gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814] Length = 1126 Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HGVG I++ V + ++ I++ + L +P + I Sbjct: 442 KPGDYVVHENHGVGVYQGIEKIVVDKISKDYMKISYAQGG-NLYIPATQLDLI 493 >gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica str. Tucson] gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica str. Tucson] Length = 1158 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ + L VPV I Sbjct: 486 PGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGED-KLYVPVSSLHLI 536 >gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM 4541] gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM 4541] Length = 1148 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G++ E+ ++ + + L VPV I Sbjct: 477 RPGQPVVHIEHGVGRYQGLTTLEAGGIQAEYLILTYAGND-KLYVPVSSLHLI 528 >gi|27379712|ref|NP_771241.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA 110] gi|27352864|dbj|BAC49866.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA 110] Length = 1172 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 11/117 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G ++ +VAG + + + + L +PV + R S+ Sbjct: 503 GDIVVHVDHGIGRFVGLQTLDVAGAPHDCLELHYAAET-KLFLPVENIELLS-RYGSDQT 560 Query: 77 FVERALKLVRG-KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132 VE L + G + ++ R +E +LI IA R LH P + Sbjct: 561 TVE--LDRLGGSGWQTRKAKLKNRIREIAD-----ELIKIAA-ARHLHEAPKLPVQP 609 >gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1165 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 25/130 (19%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G ++ E G + I + D L +PV + Sbjct: 491 AEASALSAGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAGDD-RLFLPVENIELLS 549 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R + E L + G A W R + K L+ +A L R Sbjct: 550 -RY--GSDTAEATLDKLGGGA------WQSR-KARLRK----RLLDMA---GQLIRI--- 589 Query: 129 PEKSYSERQL 138 +ERQ+ Sbjct: 590 ----AAERQM 595 >gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus 10329] Length = 1153 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium 5_1_63FAA] gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium 5_1_63FAA] Length = 948 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 G+++V+ HGVG I++ G++ ++ I + Sbjct: 505 NIGDYVVHEKHGVGIYRGIEKITTDGVEKDYISIEYQGGD 544 >gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3] gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3] Length = 1123 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 451 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 502 >gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis HAW-EB4] gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis HAW-EB4] Length = 1157 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ V+ + L VPV I R Sbjct: 486 KVGQPIVHLDHGVARYQGLETLDTGGLVAEYLVLEYSGGD-KLYVPVSSLHLIS-RYSVG 543 Query: 75 AHF 77 Sbjct: 544 PDE 546 >gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810] gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810] Length = 1153 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] Length = 1169 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 Q+ R + + G+++V+ HG+G + ++ ++ ++ + + + L Sbjct: 487 RKQRSRPDAKMEPLADLKAGDYVVHVNHGIGRYLGVITLDIGALQKDYLQLQYAGED-KL 545 Query: 58 KVPVGKAIDIGM 69 VP +GM Sbjct: 546 YVPTD---QVGM 554 >gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD 2210633] gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030] gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus AN-5034] gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus Peru-466] gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037] gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD 2210633] gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus Peru-466] gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus AN-5034] gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037] gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030] Length = 1153 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] Length = 1153 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] Length = 1153 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] Length = 1175 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + + + F G+++V+ HGVG I++ V ++ ++ I + Sbjct: 490 AAFKGKGEKIKNFADISIGDYVVHEKHGVGIYRGIEKITVNNVEKDYISIEYKGGD 545 >gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica Y11] Length = 1148 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKVAEKVR 562 >gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411] gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411] Length = 1032 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66 R F G+ IV+ +G+ +K+ ++ + +FF + FD+ + VPV + Sbjct: 377 RKPKNVEFEIGDRIVHKKYGIAQFNGLKKIKIEDKQEDFFELEFDEGD-KVYVPVYNSDA 435 Query: 67 I 67 + Sbjct: 436 L 436 >gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326] gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326] Length = 1154 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVASLNLI 532 >gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM 15053] gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM 15053] Length = 1113 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ I++ K L +P + I Sbjct: 442 KPGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYAKGG-NLYIPATQLDLI 493 >gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC 700345] gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC 700345] Length = 1157 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ V+ + L VPV I R Sbjct: 486 KVGQPIVHLDHGVARYQGLETLDTGGLVAEYLVLEYSGGD-KLYVPVAALNLIS-RYSVG 543 Query: 75 AHF 77 Sbjct: 544 PDE 546 >gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor owensensis OL] gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor owensensis OL] Length = 1141 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 19/121 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +G+G ++ V G E+ + + + L VP + K Sbjct: 483 KPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDM--IEKYIG 539 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV-RDLHRTDSQPEKSY 133 V+ L + K W R+ K+ EVV +DL ++ + Sbjct: 540 TDDVQPKLSKLGSKE------WQRQ----KQKVK-----KSLEVVAKDLVELYAKRQLGQ 584 Query: 134 S 134 Sbjct: 585 G 585 >gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] Length = 1173 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 G+++V+ HGVG I++ G++ ++ I + Sbjct: 505 NIGDYVVHEKHGVGIYRGIEKITTDGVEKDYISIEYQGGD 544 >gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9211] gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9211] Length = 1169 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 5 QKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +KR A + RTG+++V+ HG+G +I++ ++ ++ ++ L+V Sbjct: 484 RKRSASKSIDHNKLRTGDYVVHRNHGIGKFIKIEKFVISQESRDYLLVQ--YQDGTLRVA 541 Query: 61 VGKAIDIGMRKLSEAHFVERA 81 + +G R S + R Sbjct: 542 ADQLGSLG-RYRSSSDKSPRI 561 >gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus 238] gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus 238] Length = 1154 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI--- 65 Q G+ +V+ HGVG ++ G E ++ + + L +PV Sbjct: 477 TETQSLTPGDLVVHVDHGVGRYLGMEVVTALGAAHECLLLEYAESS-KLYLPVENIELLS 535 Query: 66 ----DIGMRK 71 ++G+ Sbjct: 536 RYGHEVGLLD 545 >gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311] gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311] Length = 1180 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R + G+ +V+ HG+G ++++ ++G ++ V+ L+V Sbjct: 475 RKAASRTVDPNKMQQGDFVVHRNHGIGRFKKLEKLAISGEVRDYLVVQ--YSDGILRVAA 532 Query: 62 GKAIDIG 68 + +G Sbjct: 533 DQLGSLG 539 >gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM] gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM] Length = 1153 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E ++ + ++ L +PV Sbjct: 471 TEAQSLSPGDLVVHVDHGIGRYHGMEVISAAGAAHECLLLEYAENA-RLYLPVENIEL-- 527 Query: 69 MRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 LS E L + G A + K+ R +E ++ Sbjct: 528 ---LSRYGHDEGLLDRLGGGAWQAKKAKLKERIREMADRL 564 >gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25] Length = 1153 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GMK E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|47218998|emb|CAG02036.1| unnamed protein product [Tetraodon nigroviridis] Length = 1070 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 12/116 (10%) Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + +++ GK V+ R+ +E K+NS ++ E ++L R + E+ Sbjct: 660 EEELSQLQQVLDGKEEVE-----RQHRENIKKLNS--VVERQE--KELSRLQTDAEELQE 710 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK---STSENQDKA 187 + ++AL+ +E+A ++ + A E LS + EK + + Q++A Sbjct: 711 NNRSLQAALDTSYKELAELHKTNASRASEAEEAALSRDAQAKEKLSLALEKAQEEA 766 >gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum DSM 20595] gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum DSM 20595] Length = 1168 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFDKDKM-- 55 M ++K + G+++V+ HGV ++ ++ + G + E+ V+ + K Sbjct: 473 MPKRRKNAVDPLQLKPGDYVVHQRHGVAQFVKLAKRALGGRSGSQREYVVLEYASSKRGN 532 Query: 56 ---CLKVPVGKAIDI 67 L VP + + Sbjct: 533 PRDQLWVPTDQLDQV 547 >gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120] gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120] Length = 1185 Score = 40.5 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+++V+ +HG+G +++ + ++ V+ + + + A +G Sbjct: 516 GDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYADGLLRV-----AADQVG 562 >gi|301335326|ref|ZP_07223570.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1] gi|301336312|ref|ZP_07224514.1| transcription-repair coupling factor [Chlamydia muridarum MopnTet14] Length = 1081 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + D+ L VP ++ I R + Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYA-DRARLYVPSDQSYLIS-RYVGA 491 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G W RR++E K Sbjct: 492 SEKAPD-LHHLNG------AKW-RRSRELSEK 515 >gi|119356706|ref|YP_911350.1| transcription-repair coupling factor [Chlorobium phaeobacteroides DSM 266] gi|119354055|gb|ABL64926.1| transcription-repair coupling factor [Chlorobium phaeobacteroides DSM 266] Length = 1127 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 Q + G+++V+ +G+G ++ V + E ++ ++ L V +I + Sbjct: 427 QKLKVGDYVVHENYGIGRFKTLETISVGNSEQECVLVEYEGGD-QLFV---NVQNINL 480 >gi|307942228|ref|ZP_07657579.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4] gi|307774514|gb|EFO33724.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4] Length = 1162 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 15/109 (13%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G G+ +V+ HG+G T +K E G + + + D L +PV + Sbjct: 488 TEASGLSEGDLVVHVEHGIGRFTGLKTIEAVGAPHDCMELQYA-DGAKLYLPVENIELLS 546 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117 R + + L + G A W R AK+ ++ IA+ Sbjct: 547 -RY--GSEDSDSQLDKLGGGA------WQAR----KAKLKK-RILEIAD 581 >gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972] gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972] Length = 1153 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVSSLNLI 532 >gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM 16992] gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM 16992] Length = 1182 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM----- 55 +++ + G+++V+ HG+G E++++ + E+ VI + K Sbjct: 492 RRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIEYASSKRGAPAD 551 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 552 KLFIPTDQLDQV 563 >gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16] gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16] Length = 1153 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV I Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVASLNLI 532 >gi|78186513|ref|YP_374556.1| transcription-repair coupling factor [Chlorobium luteolum DSM 273] gi|78166415|gb|ABB23513.1| Transcription-repair coupling factor [Chlorobium luteolum DSM 273] Length = 1109 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 28/112 (25%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI---- 67 Q + G+H+V+ +GVG ++ + E ++ ++ L V V + Sbjct: 409 QKLKVGDHVVHEDYGVGIFRSLETITAGNSEQECVLVEYEGGD-QLFVNVQNINLLSKYA 467 Query: 68 ---GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 G R + + W+ R K+ S + IA Sbjct: 468 ASEGSRPVLSK---------------LGSPKWAAR----KEKVRS-KIRDIA 499 >gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E] gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E] Length = 1148 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E AG+K E+ ++ + + L VPV I R + Sbjct: 482 KIGQPVVHLDHGVGRYGGLVTLENAGIKAEYLLLTYA-NDAKLYVPVANLHLIS-RYVGG 539 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 + ++ W++ ++ KI Sbjct: 540 SEETAPL-------HKLGSDSWAKARRKAAEKIR 566 >gi|220926926|ref|YP_002502228.1| transcription-repair coupling factor [Methylobacterium nodulans ORS 2060] gi|219951533|gb|ACL61925.1| transcription-repair coupling factor [Methylobacterium nodulans ORS 2060] Length = 1190 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 19/120 (15%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q G+ +V+ HG+G T +K AG + I + L +PV + Sbjct: 517 QALEAGDLVVHADHGIGRFTGLKTVTAAGAPHDCLEIQYSGG--LLLLPVENIE---LLT 571 Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131 + + L + G A W R AK+ I E+ L + ++ Sbjct: 572 RYGSEEADVPLDKLGGGA------WQAR----KAKLK----RRILEMAGALIKVAAERFL 617 >gi|310815553|ref|YP_003963517.1| transcription-repair coupling factor [Ketogulonicigenium vulgare Y25] gi|308754288|gb|ADO42217.1| transcription-repair coupling factor [Ketogulonicigenium vulgare Y25] Length = 1152 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 42/143 (29%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI------- 67 G+ +V+ HGVG ++ AG E V+ + + L +PV + Sbjct: 478 SPGDLVVHVEHGVGRYLGLEVITAAGAPYECLVLEYAESA-KLYLPVVNIELLSRYGHEE 536 Query: 68 --------------------GMRKLSE---AHFVERALKLVRGKARVKRTMWSRR----- 99 +R +++ ERAL+ + +W + Sbjct: 537 GLLDKLGGGAWQAKKARLKERIRMIADSLIRVAAERALRT-APEVDPPSEIWEQFLARFP 595 Query: 100 AQEYDAKINSGDLIAIAEVVRDL 122 QE D ++ AI +V+ DL Sbjct: 596 YQETDDQLQ-----AIGDVIGDL 613 >gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str. Madrid E] gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii] gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22] Length = 1120 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + GE +V+ HG+G +++ ++ G +F I + + L VPV I Sbjct: 457 KEGEFVVHKDHGIGQFLKLEAFKIQGKLHDFLKILYFGND-KLYVPVENIEVI 508 >gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1103 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVP 60 + + G+ +V+ HG+G ++++ G+ EFF+I + ++ L VP Sbjct: 442 STYHTPPSDSYHLVPGDMVVHLNHGIGRFLGLEKKLNHNGVLSEFFLIEYAENG-KLYVP 500 Query: 61 VGKAIDI 67 + +A + Sbjct: 501 LNQAHLV 507 >gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM 4810] gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM 4810] Length = 1211 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 R G+H+V+ HGVG E+ + V E+ VI + K L VP + Sbjct: 513 RPGDHVVHAHHGVGRFVEMTRRAVGSGAKRTTREYLVIEYAPSKKGQPGDRLYVPSDQLD 572 Query: 66 DI 67 + Sbjct: 573 QV 574 >gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13] gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13] Length = 1120 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + + ++ G EF ++ ++K+ L VPV + I Sbjct: 455 SVGDPVVHENHGVGRYQGLVQLDMLGSINEFLLLTYEKED-KLYVPVTQLNSI 506 >gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008] gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008] Length = 1098 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 427 PGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPANNLDQL 477 >gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131] gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131] Length = 1147 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + D L VPV I Sbjct: 477 RPGQPVVHIEHGVGRYQGLITLEAGGIKAEYLILTYAGDD-KLYVPVSSLHLI 528 >gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon 078 str. F0262] gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon 078 str. F0262] Length = 1125 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 17/122 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +HG+G I+ G+ ++ I + D L +P K G++K Sbjct: 453 SPGDYVVHESHGIGIYRGIERISTDGVTKDYIQIEY-GDGGRLYLPATKLE--GIQKYGS 509 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + G + W K S A+ EV ++L S + + Sbjct: 510 SEGAAPKLNKLNG------SDW--------QKTKSRVRHAVKEVAKELVALYSARQSASG 555 Query: 135 ER 136 R Sbjct: 556 HR 557 >gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218] Length = 1125 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV I Sbjct: 453 KPGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVSSLNLI 504 >gi|329577443|gb|EGG58892.1| conserved domain protein [Enterococcus faecalis TX1467] Length = 542 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVI 48 +TG+++V+ HG+G ++ EV G+ ++ I Sbjct: 509 KTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTI 542 >gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247] gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247] Length = 1195 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HG+G E+ E+ V+G + E+ V+ + K L VP+ + Sbjct: 515 GDLVVHDQHGIGKFVEMIERTVSGARREYLVLEYAPSKRGQPGDRLYVPMDALDQL 570 >gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1182 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM----- 55 +++ + G+++V+ HG+G E++++ + E+ VI + K Sbjct: 492 RRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIEYASSKRGAPAD 551 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 552 KLFIPTDQLDQV 563 >gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328] gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328] Length = 1167 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+++V+ HG+G +++ + ++ V+ + + + A +G Sbjct: 497 QPGDYVVHRQHGIGKFVKLESLTINQEIRDYLVLQYADGTLRV-----AADQVG 545 >gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Magnetospirillum magnetotacticum MS-1] Length = 1131 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 18/127 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G + EV+G + + +D L VPV Sbjct: 458 AEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVIYDGGD-KLFVPVENI---- 512 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 + E+A + ++ T W R AK+ + IA+ L +Q Sbjct: 513 --DVLTRFGSEQAGVSL---DKLGGTAWQAR----KAKLKK-RIRDIAD---QLIGIAAQ 559 Query: 129 PEKSYSE 135 + E Sbjct: 560 RKMRQGE 566 >gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605] gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605] Length = 1192 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G +++ ++G ++ V+ + L+V Sbjct: 487 RKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADG--ILRVAA 544 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + +G R + + + R+ T W++ A+E K A+ +V D Sbjct: 545 DQLGSLG-RYRATSETPPQL-------NRMGGTAWNK-AKERAKK-------AVRKVALD 588 Query: 122 LHRTDSQPEKSYS 134 L + ++ +++ Sbjct: 589 LVKLYAERQQAAG 601 >gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158 str. F0412] gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158 str. F0412] Length = 1055 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 427 PGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPANNLDQL 477 >gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05] gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05] Length = 1202 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM----- 55 +++ + G+ +V+ HG+G +K++ +A E+ VI + K Sbjct: 518 RRKAIDLMELKPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPND 577 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 578 KLFIPTDQLDLV 589 >gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109] gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109] Length = 1203 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G +++ ++G ++ V+ + L+V Sbjct: 498 RKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADG--ILRVAA 555 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + +G R + + + R+ T W++ A+E K A+ +V D Sbjct: 556 DQLGSLG-RYRATSETPPQL-------NRMGGTAWNK-AKERAKK-------AVRKVALD 599 Query: 122 LHRTDSQPEKSYS 134 L + ++ +++ Sbjct: 600 LVKLYAERQQAAG 612 >gi|57237967|ref|YP_179216.1| transcription-repair coupling factor [Campylobacter jejuni RM1221] gi|205355835|ref|ZP_03222604.1| transcription repair coupling factor [Campylobacter jejuni subsp. jejuni CG8421] gi|57166771|gb|AAW35550.1| transcription-repair coupling factor [Campylobacter jejuni RM1221] gi|205346269|gb|EDZ32903.1| transcription repair coupling factor [Campylobacter jejuni subsp. jejuni CG8421] gi|315058526|gb|ADT72855.1| Transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni S3] Length = 978 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 718 Score = 39.7 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|153951893|ref|YP_001397800.1| transcription-repair coupling factor [Campylobacter jejuni subsp. doylei 269.97] gi|152939339|gb|ABS44080.1| transcription-repair coupling factor [Campylobacter jejuni subsp. doylei 269.97] Length = 978 Score = 39.7 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM 20109] gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM 20109] Length = 1214 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 R G+ +V+ HGVG E+ ++ + E+ V+ + K L VP + Sbjct: 527 RPGDFVVHEQHGVGRFVELVQRTIGSGAAAATREYLVVEYASSKRGQPGDRLYVPTDQLD 586 Query: 66 DI 67 + Sbjct: 587 QV 588 >gi|284926314|gb|ADC28666.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni IA3902] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|238783787|ref|ZP_04627806.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC 43970] gi|238715338|gb|EEQ07331.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC 43970] Length = 725 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1042 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++IV+ HG+G IK Q+ G + + V+ + + L VP I Sbjct: 377 NEGDYIVHKEHGIGIFRGIKRQKYEGTEEDVLVLEYKDGDI-LYVPTWNIGKI 428 >gi|86150348|ref|ZP_01068574.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839173|gb|EAQ56436.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni CF93-6] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|88596440|ref|ZP_01099677.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|218562699|ref|YP_002344478.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88191281|gb|EAQ95253.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|112360405|emb|CAL35202.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315929931|gb|EFV09089.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 305] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD] gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD] Length = 1202 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM----- 55 +++ + G+ +V+ HG+G +K++ +A E+ VI + K Sbjct: 518 RRKAIDLMELKPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPND 577 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 578 KLFIPTDQLDLV 589 >gi|332703850|ref|ZP_08423938.1| transcription-repair coupling factor [Desulfovibrio africanus str. Walvis Bay] gi|332553999|gb|EGJ51043.1| transcription-repair coupling factor [Desulfovibrio africanus str. Walvis Bay] Length = 1158 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 18/101 (17%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL-- 72 R G+ +V+ +G+G ++ + + ++ +I FD + L +PV + +R + Sbjct: 487 RPGDLLVHRDYGLGRFGGLERLTIGDVANDYLLIHFDGED-KLFLPVDR-----LRLVQR 540 Query: 73 -SEAHFVERALKLVRGKARVKRTMWSR---RAQEYDAKINS 109 ++ +L +RG T W RA++ KI Sbjct: 541 YQGPEGLDPSLDSLRG------TRWKHTTERAKKAIEKIAQ 575 >gi|315124568|ref|YP_004066572.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018290|gb|ADT66383.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|157415346|ref|YP_001482602.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 81116] gi|157386310|gb|ABV52625.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 81116] gi|307747987|gb|ADN91257.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni M1] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421] gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421] Length = 1154 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ +V+ +HG+G ++++ V+G E+ VI + + + Sbjct: 488 NPGDFVVHRSHGIGRFAKLEKLTVSGSAREYLVIEYADGILRV 530 >gi|86151063|ref|ZP_01069279.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|86153028|ref|ZP_01071233.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613373|ref|YP_001000763.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 81-176] gi|85842233|gb|EAQ59479.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|85843913|gb|EAQ61123.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249115|gb|EAQ72076.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 81-176] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506] gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506] Length = 1170 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 27/163 (16%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K E G + I + + L +PV + R SE Sbjct: 500 GDLVVHVDHGIGRFIGLKTIEAMGAPHDCLEIHYAEGS-KLFLPVENLELLS-RYGSEDT 557 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136 + L + G W R A++ S I E+ +L + +Q + + R Sbjct: 558 EAQ--LDRLGGGG------WQAR----KARMKS----RIREMAAELIKVAAQRQLHEAPR 601 Query: 137 -----QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 LY+ R E + + AI + +L S Sbjct: 602 LVPAAGLYDEFRARFPYE----ETEDQDAAIESVFDDLGSGHP 640 >gi|283956482|ref|ZP_06373962.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 1336] gi|283792202|gb|EFC30991.1| transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 1336] Length = 978 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++K + + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] Length = 1192 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 G+++V+ HG+G +++ + E+ VI + + + A +G+ Sbjct: 526 PGDYVVHKNHGIGQFVKLESLTLNHQTREYLVIKYADGLLRV-----AADQVGV 574 >gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] Length = 1159 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ + L VPV I Sbjct: 489 PGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYSGED-KLYVPVSSLHLI 539 >gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268] gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268] Length = 1138 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 15/119 (12%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+++V+ +HG+G I+ G+ ++ I D L +PV K G+ K + Sbjct: 468 GDYVVHESHGIGIYEGIERIVTDGVSKDYLKI-LYGDGGNLYLPVNKLD--GIEKYAGKE 524 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-RTDSQPEKSYS 134 L + G W Q+ +K+ G + IA+ + L+ + + + Sbjct: 525 AKAPKLNRLNGSE------W----QKTKSKVK-GAVREIAKELLALYAKRQEERGYPFG 572 >gi|2073486|emb|CAA72474.1| transcription repair coupling factor [Rickettsia prowazekii] Length = 989 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + GE +V+ HG+G +++ ++ G +F I + + L VPV I Sbjct: 326 KEGEFVVHKDHGIGQFLKLEAFKIQGKLHDFLKILYFGND-KLYVPVENIEVI 377 >gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica ACS-134-V-Col7a] gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica ACS-134-V-Col7a] Length = 1096 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 426 SVGDYVVHSMHGIGKYVGLKTIETEGIHRDYIEIAYAGTD-RLYLPASNLDQL 477 >gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568] gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568] Length = 1176 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++++ + L VPV I R A Sbjct: 506 PGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGED-KLYVPVSSLHLIS-RYAGGA 563 Query: 76 HFVERALKLVRGKARVKRTMWSR-RAQE 102 L + G A WSR R + Sbjct: 564 DE-NAPLHKLGGDA------WSRARQKA 584 >gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP] gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP] Length = 1160 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 13/116 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 491 KIGQAVVHLENGVGRYAGLTVLDTGGIKAEYLVLNYA-NDAKLYVPVAALHLIS-RYIGG 548 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A + L + + W++ Q+ KI+ D+ AE++ + ++Q Sbjct: 549 ADE-QAPLHKLGSE------TWAKNRQKAVEKIH--DI--AAELLDIYAKRETQKG 593 >gi|221195565|ref|ZP_03568620.1| hypothetical protein ATORI0001_0888 [Atopobium rimae ATCC 49626] gi|221184752|gb|EEE17144.1| hypothetical protein ATORI0001_0888 [Atopobium rimae ATCC 49626] Length = 166 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 7/72 (9%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71 + G ++V+P GV I+ + + G + ++ + + P+ + +R Sbjct: 1 MYAVGNYVVHPGQGVCQISAV----IQGSDGYYTLVPISHKHPIQITFPL--VQEARLRS 54 Query: 72 LSEAHFVERALK 83 + + + + Sbjct: 55 VLSSKEAKVLID 66 >gi|50955304|ref|YP_062592.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951786|gb|AAT89487.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1204 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG-------MKLEFFVIAFDKD 53 + ++K + G+H+V+ HG+G E+ ++EV+ K E+ V+ + Sbjct: 503 LATRRKSVVDPLQLKPGDHVVHETHGIGRFVELTQREVSSGGRNAVKSKREYLVLEYAPS 562 Query: 54 KM-----CLKVPVGKAI 65 K L VP + Sbjct: 563 KRGYPGDKLYVPTDQLD 579 >gi|268680233|ref|YP_003304664.1| transcription-repair coupling factor [Sulfurospirillum deleyianum DSM 6946] gi|268618264|gb|ACZ12629.1| transcription-repair coupling factor [Sulfurospirillum deleyianum DSM 6946] Length = 989 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+++V+ +G+G + + V G +F +I + D L +PV Sbjct: 355 KNGDYVVHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDD-KLLLPVEN 402 >gi|57241985|ref|ZP_00369925.1| transcription-repair coupling factor [Campylobacter upsaliensis RM3195] gi|57017177|gb|EAL53958.1| transcription-repair coupling factor [Campylobacter upsaliensis RM3195] Length = 974 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ IV+ +GVG ++ ++G K EF +++ + L +PV Sbjct: 342 KIGDFIVHEDYGVGKFLGLELLNISGAKKEFVALSYQNND-KLLLPVEN 389 >gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC BAA-450] gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC BAA-450] Length = 1153 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HG+G ++ E GM E+ + + ++ L VPV Sbjct: 481 KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEY-QNDAKLYVPVA 527 >gi|330861382|emb|CBX71615.1| transcription-repair-coupling factor [Yersinia enterocolitica W22703] Length = 740 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 297 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 354 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 355 ADE-NAPLHKLGGDA------WSRARQKAAEKVR 381 >gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica ACS-049-V-Sch6] gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica ACS-049-V-Sch6] Length = 1096 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 426 SVGDYVVHSMHGIGKYVGLKTIETEGIHRDYIEIAYAGTD-RLYLPASNLDQL 477 >gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM 20098] gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM 20098] Length = 1198 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GM---KLEFFVIAFDKDKM----- 55 +++ +TG+++V+ HG+G E++++ V G E+ VI + K Sbjct: 507 RRKAIDLMELKTGDYVVHEQHGIGRFIEMRQRTVGTGENKATREYLVIEYAPSKRGAPAD 566 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 567 KLFIPTDQLDLV 578 >gi|171910874|ref|ZP_02926344.1| transcription-repair coupling factor [Verrucomicrobium spinosum DSM 4136] Length = 1117 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 44/147 (29%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA----IDI 67 + R G+ +V+ +G+G I+ +E G + E ++ + + VPV +A + Sbjct: 434 RELREGDLVVHLDYGIGKYGGIEVRE--GARREEVMVIRYAEDAKVFVPVSQAHLVSRYV 491 Query: 68 GM-------------RKLSEAHFVERALK--------------LVRGKARVKRTMWSRR- 99 G+ R + E++++ ++G A T W Sbjct: 492 GVGSRAPTLNKLGDARWVKTRAQAEKSVEEFAAGMLSIAAQRQTLKGHAHPPDTKWQVEF 551 Query: 100 -----AQEYDAKINSGDLIAIAEVVRD 121 +E ++ S IAE+ RD Sbjct: 552 EQSFLYRETPDQLKS-----IAEIKRD 573 >gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum AMB-1] gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum AMB-1] Length = 1134 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 18/127 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G + EV+G + + +D L VPV Sbjct: 461 AEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLYDGGD-KLFVPVENI---- 515 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 + E+A + ++ T W R AK+ + IA+ L +Q Sbjct: 516 --DVLTRFGSEQAGVSL---DKLGGTAWQAR----KAKLKK-RIRDIAD---QLIGIAAQ 562 Query: 129 PEKSYSE 135 + E Sbjct: 563 RKMRQGE 569 >gi|315638290|ref|ZP_07893471.1| transcription-repair coupling factor [Campylobacter upsaliensis JV21] gi|315481637|gb|EFU72260.1| transcription-repair coupling factor [Campylobacter upsaliensis JV21] Length = 974 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ IV+ +GVG ++ ++G K EF +++ + L +PV Sbjct: 342 KIGDFIVHEDYGVGKFLGLELLNISGAKKEFVALSYQNND-KLLLPVEN 389 >gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1149 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYAGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQE 102 A L + G A WSR R + Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKA 557 >gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] Length = 1206 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 24/39 (61%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 G+++V+ +G+G I++ +V G++ ++ I++ + Sbjct: 525 NIGDYVVHENYGIGQYKGIEKIKVEGVEKDYIKISYADN 563 >gi|56696942|ref|YP_167304.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3] gi|56678679|gb|AAV95345.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3] Length = 1142 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G+ +V+ HG+G ++ AG E + + ++ L +PV Sbjct: 463 TETQSLTPGDLVVHVDHGIGRYRGLEVITAAGAAHECIALDYAEEA-RLYLPVENIE--- 518 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + E L + G A + K+ R +E ++ Sbjct: 519 ---LLSKYGHEEGLLDRLGGGAWQAKKAKLKERIREMADRL 556 >gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1173 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + Sbjct: 505 QIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLNYA-NNSKLYVPVASLHLIS-RYVGG 562 Query: 75 AHFVERALKLVRGKARVKRTMW-SRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + +A W R++ KI D+ AE++ + ++Q S+ Sbjct: 563 SDETAP-LHKLGSEA------WGKARSKA-AEKIR--DV--AAELLDVYAQREAQKGFSF 610 Query: 134 S-ERQL---------YESALNRMVREIAAVNSISEPEAINLI 165 +R+ +E ++++ A ++ +++P+A++ + Sbjct: 611 QYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRL 652 >gi|189346300|ref|YP_001942829.1| transcription-repair coupling factor [Chlorobium limicola DSM 245] gi|189340447|gb|ACD89850.1| transcription-repair coupling factor [Chlorobium limicola DSM 245] Length = 1116 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 24/124 (19%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +G+G ++ V + E ++ ++ L V +I + LS+ Sbjct: 417 KIGDYVVHEDYGIGIFKSLETITVGNSEQECVLVEYEGGD-QLFV---NVQNINL--LSK 470 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 E AL + +++ + W+ + ++ KI IA +L R Y+ Sbjct: 471 YTAAEGALPSL---SKLGSSKWAAKKEKVRKKIR-----DIAI---NLIRL-------YA 512 Query: 135 ERQL 138 ER + Sbjct: 513 ERTM 516 >gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969] gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969] Length = 1148 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G+A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGEA------WSRARQKAAEKVR 562 >gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] Length = 1160 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 18 EHIVYPAHGVGTITEIKEQE--VAGMKL--EFFVIAFDKDKMCLKVPVGKAIDI 67 + +V+ HG+G ++++QE ++G+ ++ VI + L+VP ++ Sbjct: 491 DFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADG--LLRVPADSVDNL 542 >gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis KC583] gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis KC583] Length = 1163 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HGVG +K AG+ + I++ L +PV + R + Sbjct: 500 GDFVVHIDHGVGQFIGLKTIMTAGILRDCLEISYAGGD-RLFLPVENVELLS-RY--GSE 555 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A R R +++ +I G LI IA Sbjct: 556 DTDVTLDKLGGVAWQARKT---RFKKHLLQIA-GQLICIA 591 >gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1148 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 GE+IV+ HG+G I + + AG ++ +I + K L VPV + I Sbjct: 483 GEYIVHVEHGIGIYRGIVKTKAAGSVSDYILIEYSKGD-RLYVPVDQIGRI 532 >gi|15618800|ref|NP_225086.1| transcription-repair coupling [Chlamydophila pneumoniae CWL029] gi|15836424|ref|NP_300948.1| transcription-repair coupling [Chlamydophila pneumoniae J138] gi|16752145|ref|NP_445512.1| transcription-repair coupling factor [Chlamydophila pneumoniae AR39] gi|33242253|ref|NP_877194.1| transcription-repair coupling factor [Chlamydophila pneumoniae TW-183] gi|4377210|gb|AAD19029.1| Transcription-Repair Coupling [Chlamydophila pneumoniae CWL029] gi|7189888|gb|AAF38755.1| transcription-repair coupling factor [Chlamydophila pneumoniae AR39] gi|8979265|dbj|BAA99099.1| transcription-repair coupling [Chlamydophila pneumoniae J138] gi|33236764|gb|AAP98851.1| transcription-repair coupling factor [Chlamydophila pneumoniae TW-183] Length = 1085 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 437 PGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYA-DKARLYVPSNQAYLIS-RYVGT 494 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + + + W R+++ K Sbjct: 495 SDKAADL-------HHLNSSKWK-RSRDLTEK 518 >gi|226330514|ref|ZP_03806032.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198] gi|225201309|gb|EEG83663.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198] Length = 708 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++++ + L VPV I Sbjct: 36 SIGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLMLSYAGND-KLYVPVSSLHLI 87 >gi|49475638|ref|YP_033679.1| transcription repair coupling factor [Bartonella henselae str. Houston-1] gi|49238445|emb|CAF27673.1| Transcription repair coupling factor [Bartonella henselae str. Houston-1] Length = 1168 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G +K AG+ + I + + L +PV Sbjct: 501 GDIVVHIDHGIGQFVGLKTITTAGILRDCLEIKYAGGDL-LFLPVENIE 548 >gi|269302679|gb|ACZ32779.1| transcription-repair coupling factor [Chlamydophila pneumoniae LPCoLN] Length = 1083 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G I+++ ++ ++ V+ + DK L VP +A I R + Sbjct: 435 PGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYA-DKARLYVPSNQAYLIS-RYVGT 492 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + + + W R+++ K Sbjct: 493 SDKAADL-------HHLNSSKWK-RSRDLTEK 516 >gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] Length = 1177 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 G+++V+ +G+G I++ EV G++ ++ I + L + Sbjct: 506 IGDYVVHENYGLGIYRGIEKIEVEGIERDYIKIEYSGTD-TLYI 548 >gi|241763660|ref|ZP_04761710.1| flagellin domain protein [Acidovorax delafieldii 2AN] gi|241367135|gb|EER61501.1| flagellin domain protein [Acidovorax delafieldii 2AN] Length = 522 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 109 SGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 SGD++ VR+L + S S+RQ + +N++ E+ + +E L++ + Sbjct: 85 SGDILQR---VRELAVQSANATNSASDRQALNAEVNQLTSELDRIAKTTEFNGRKLLDGS 141 Query: 169 LSSKS 173 +S + Sbjct: 142 FTSAA 146 >gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] Length = 1187 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 24/56 (42%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R R G+ +V+ HG+G +++ ++G ++ V+ + + + Sbjct: 482 RKAASRTVDPNKMRPGDFVVHRNHGIGRFLRLEKLAISGESRDYLVVQYADGLLRV 537 >gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1150 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 479 RPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYAGG 536 Query: 75 AHFVERALKLVRGKARVKRTMWSR-RAQE 102 A L + G A WSR R + Sbjct: 537 ADE-NAPLHKLGGDA------WSRARQKA 558 >gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis NIES-39] Length = 1167 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+++V+ HG+G +++ ++ ++ V+ + + + A +G Sbjct: 497 QPGDYVVHRQHGIGKFVKLESLTISQEIRDYLVLQYADGTLRV-----AADQVG 545 >gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str. Paraca] Length = 1152 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+++V+ HG+G +++ ++ ++ V+ + + + A +G Sbjct: 482 QPGDYVVHRQHGIGKFVKLESLTISQEIRDYLVLQYADGTLRV-----AADQVG 530 >gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484] gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484] Length = 1222 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 27/117 (23%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R G+ +V+ HGVG E+ ++ + E+ VI + K G R Sbjct: 534 RPGDFVVHEQHGVGRFVELVQRTIGTGANAATREYLVIEYASS---------KRGQPGDR 584 Query: 71 KLSEAHFVERALKLVRGKARVKRTM----WSR---RAQEYDAKINSGDLIAIAEVVR 120 + +++ K V G+A M W++ RA+ +I AE++R Sbjct: 585 LFVPSDQLDQVTKYVGGEAPTLNRMGGGDWAKTKGRARRAVKEIA-------AELIR 634 >gi|291541698|emb|CBL14808.1| transcription-repair coupling factor [Ruminococcus bromii L2-63] Length = 1152 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ + G+ ++ I + K + L VPV + + Sbjct: 495 PGDYVVHNVHGIGVFGGIRKIDTHGVIKDYIKIDYAKGDV-LYVPVTQLDMV 545 >gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11] gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11] Length = 1161 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 18/123 (14%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G + +V+ HG+G +K E G + + + L +PV + Sbjct: 488 TEATGLSESDLVVHVEHGIGRFIGLKTVEAIGAPHDCLELQYAGGD-KLYLPVENIELLS 546 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 R SE + L + G A W R AK+ ++ IA+ L +T ++ Sbjct: 547 -RYGSEDQEAQ--LDKLGGGA------WQAR----KAKLKK-RILEIAD---GLIKTAAE 589 Query: 129 PEK 131 Sbjct: 590 RAL 592 >gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473] gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473] Length = 1148 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKAAEKVR 562 >gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] Length = 1147 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ G+G I + V G+K ++ I + L VP+ + + Sbjct: 495 NPGDYVVHENSGIGRYIGIDQITVDGIKKDYMKIVYRDGD-NLYVPIDQMDKV 546 >gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1152 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + Sbjct: 484 QIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLNYA-NNSKLYVPVASLHLIS-RYVGG 541 Query: 75 AHFVERALKLVRGKARVKRTMW-SRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133 + L + +A W R++ KI D+ AE++ + ++Q S+ Sbjct: 542 SDETAP-LHKLGSEA------WGKARSKA-AEKIR--DV--AAELLDVYAQREAQKGFSF 589 Query: 134 S-ERQL---------YESALNRMVREIAAVNSISEPEAINLI 165 +R+ +E ++++ A ++ +++P+A++ + Sbjct: 590 QYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRL 631 >gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] Length = 1170 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G G ++V+ HG+G ++ E AG + + + L +PV + Sbjct: 497 AEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLEL-VYAEDAKLFLPVENIELLS 555 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN------SGDLIAIA 116 R + + L + G A W R AK+ +G LI IA Sbjct: 556 -RY--GSEGTDAILDKLGGVA------WQAR----KAKLKKRLLDMAGGLIRIA 596 >gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5] gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5] Length = 1119 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 27/53 (50%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 T++ ++ + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 436 TYEGQKIQNFSELKVGDYVVHENHGLGVYQGIEKIEVDKVTKDYMKISYAGGG 488 >gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1148 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380] gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380] Length = 1148 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G WSR Q+ K+ Sbjct: 536 ADE-NAPLHRLGGDV------WSRARQKAAEKVR 562 >gi|148273452|ref|YP_001223013.1| putative transcription-repair coupling factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831382|emb|CAN02340.1| putative transcription-repair coupling factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1210 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG-------MKLEFFVIAFDKD 53 + ++K + G+H+V+ HG+G E+ ++EV+ + E+ VI + Sbjct: 504 LATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQREVSSGGRNAVKTRREYLVIEYAPS 563 Query: 54 KM-----CLKVPVGKAIDIGMRKLSEAH 76 K L VP + + R + Sbjct: 564 KRGYPGDKLFVPTDQLDLLS-RYVGGEE 590 >gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1148 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKAAEKVR 562 >gi|237751094|ref|ZP_04581574.1| transcription-repair coupling factor [Helicobacter bilis ATCC 43879] gi|229373539|gb|EEO23930.1| transcription-repair coupling factor [Helicobacter bilis ATCC 43879] Length = 1042 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G ++V+ +G+G IK+ + G +F I + D L +PV I Sbjct: 396 ALKVGAYVVHSEYGIGIFEAIKQVSIMGGLKDFISIIYANDD-RLLLPVENLNMI 449 >gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1148 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKAAEKVR 562 >gi|110598535|ref|ZP_01386804.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM 13031] gi|110339839|gb|EAT58345.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM 13031] Length = 1108 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 Q + G+++V+ +G+G ++ V + E ++ ++ L V +I + Sbjct: 411 QKLKVGDYVVHEDYGIGIFKSLETITVGNSEQESVLVEYEGGD-QLFV---NVQNINL 464 >gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC 33638] gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC 33638] Length = 1048 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R S Sbjct: 378 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RY-SG 434 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + G+A WSR Q+ K+ Sbjct: 435 GADDNAPLHKLGGEA------WSRARQKAAEKVR 462 >gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM 3986] gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM 3986] Length = 1112 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++IV+ HG+G I++ E G+ ++ I + VPV K I Sbjct: 445 VGDYIVHEDHGLGIYRGIEKIERDGIIKDYVKIEYQGGD-NCFVPVSKLNRI 495 >gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] Length = 1112 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ EV + ++ IA+ L +P + I Sbjct: 442 KVGDYVVHENHGLGIYQGIEKIEVDKVSKDYMKIAYAAGG-NLYIPATQLDLI 493 >gi|319778049|ref|YP_004134479.1| dead/deah box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171768|gb|ADV15305.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1129 Score = 39.0 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKLS 73 R G+ +V+ HG+G + +++ ++AG + V+ + L VPV I R S Sbjct: 469 RIGDVVVHEDHGLGVLAAVEQVDLAGQHQD--VVRLEYHGGASLLVPVDDFGKI-WRYGS 525 Query: 74 EAHFVERALKLVRGKARVKRTMWSRR 99 E V L + G+ W +R Sbjct: 526 EPEAVS--LDRLNGEG------WPKR 543 >gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM 10542] gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM 10542] Length = 1212 Score = 39.0 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM- 55 M +++ R G+ +V+ HGVG E+ ++ + G E+ V+ + + Sbjct: 511 MPSKRRNVVDPLQLRAGDFVVHEQHGVGRFVELVQRTLGGGAAAATREYLVVEYASSRRG 570 Query: 56 ----CLKVPVGKAIDI 67 L VP + + Sbjct: 571 QPGDRLFVPTDQLDQV 586 >gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans MPOB] gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans MPOB] Length = 1189 Score = 39.0 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 Q G+ +V+ HG+G E+ V G++ +F ++ + L VPV K + Sbjct: 517 QDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLEYQDGD-RLYVPVDKLQKV 571 >gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC 33641] gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC 33641] Length = 1099 Score = 39.0 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G A WSR Q+ K+ Sbjct: 536 ADE-NAPLHKLGGDA------WSRARQKAAEKVR 562 >gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909] gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909] Length = 1148 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9301] gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9301] Length = 1169 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ IV+ HG+G +I++ + G ++ VI + K+ + Sbjct: 492 SPGDFIVHKNHGIGKFLKIEKINLTGDSRDYLVIQYQDGKISV 534 >gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp. SKA34] gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp. SKA34] Length = 1153 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+K E+ + + + L VPV I Sbjct: 484 QVGQPVVHIDHGIGRYQGLQTLEAGGIKTEYVTLEY-QGGAKLYVPVASLHLI 535 >gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14] gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14] Length = 1153 Score = 39.0 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+K E+ + + + L VPV I Sbjct: 484 QVGQPVVHIDHGIGRYQGLQTLEAGGIKTEYVTLEY-QGGAKLYVPVASLHLI 535 >gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414] gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414] Length = 1164 Score = 39.0 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+++V+ +HGVG +++ + ++ V+ + + + A +G Sbjct: 497 GDYVVHRSHGVGKFVKLESLTINHETRDYLVVQYADGILRV-----AADQVG 543 >gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC 27678] gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1] gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC 27678] gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1] Length = 1173 Score = 39.0 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM----- 55 +++ ++G+++V+ HG+G E++++ + G E+ VI + +K Sbjct: 483 RRKAIDLMELKSGDYVVHEQHGIGRFVEMRQRTIGTGANKTTREYLVIEYAPNKRGAPAD 542 Query: 56 CLKVPVGKAIDI 67 L +P + I Sbjct: 543 KLFIPTDQLDQI 554 >gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH] gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH] Length = 974 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ AHG+G +K+ E+ G E+ + + D L +PV I Sbjct: 347 KKGDFVVHEAHGIGKFNGLKKVEILGKVGEYAEVLYANDD-KLLLPVENLNLI 398 >gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis YPIII] gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis YPIII] Length = 1148 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 32953] gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis PB1/+] gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 32953] gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis PB1/+] Length = 1148 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 31758] gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP 31758] Length = 1148 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10] gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus str. 91001] gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua] gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F] gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125] gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola] gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. IP275] gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92] gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A] gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003] gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10] gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus str. 91001] gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua] gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92] gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F] gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125] gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola] gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. IP275] gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516] gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A] gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004] gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003] gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1148 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC 17745] gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC 17745] Length = 1098 Score = 39.0 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 427 PGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPANNLDQL 477 >gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236] gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236] Length = 1148 Score = 39.0 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R Sbjct: 478 RPGQPVVHLEHGVGRYLGLTTLETGGIKAEYLILTYAGED-KLYVPVSSLHLIS-RYSGG 535 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G WSR Q+ K+ Sbjct: 536 ADE-NAPLHRLGGDV------WSRARQKAAEKVR 562 >gi|320532549|ref|ZP_08033357.1| putative transcription-repair coupling factor [Actinomyces sp. oral taxon 171 str. F0337] gi|320135236|gb|EFW27376.1| putative transcription-repair coupling factor [Actinomyces sp. oral taxon 171 str. F0337] Length = 598 Score = 39.0 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 25/126 (19%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 G+ +V+ HGVG E+ + V G E+ VI + K G R L Sbjct: 10 GDLVVHAQHGVGRFIELSRRAVGGARSSATREYLVIEYAPS---------KRGQPGDRLL 60 Query: 73 SEAHFVERALKLVRGKARVKRTM----WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 +++ K V G + M W AK S A+ E+ +L R + Sbjct: 61 VPTDALDQVTKYVGGDSPALSKMGGADW--------AKTKSKARKAVREIAGELVRLYAA 112 Query: 129 PEKSYS 134 + Sbjct: 113 RAATTG 118 >gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] Length = 1169 Score = 39.0 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 + G+++V+ HG+G +++ + E+ V+ + + + V Sbjct: 499 QPGDYVVHRQHGIGKFLKLESLTINRETREYLVLQYADGLLRVAV 543 >gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM 12333] gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM 12333] Length = 1205 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-----CLKVPVGK 63 RTG+H+V+ HGVG E+ ++ + E+ VI + K L VP Sbjct: 514 ALRTGDHVVHEQHGVGRFVELVQRSIGSGPAAATREYLVIEYAASKRGQPGDRLYVPTDA 573 Query: 64 AIDI 67 + Sbjct: 574 LDQV 577 >gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira defluvii] gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira defluvii] Length = 1157 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 15/126 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+ ++ V +F V+ F L VP+ + + R Sbjct: 483 NIGDYVVHMQYGIAKYQGLRRLSVQDFDSDFLVLEFAGTD-KLYVPLDRLSQVQ-RYAGA 540 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK-SY 133 V R R+ T W++ A++ D+ +A + DL+ + SY Sbjct: 541 DAHVPRL-------DRLGGTSWAK----TTARVKK-DIEEMAHELVDLYANRELVHRTSY 588 Query: 134 SERQLY 139 + + Sbjct: 589 GKDSML 594 >gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium 2_1_46FAA] Length = 1112 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HG+G I++ +V ++ I++ L +P + I Sbjct: 442 KIGDYVVHENHGLGIYQGIEKIDVDKTSKDYMKISYAGGG-NLYIPATQLDLI 493 >gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44] gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44] Length = 1098 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 427 PGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPANNLDQL 477 >gi|270490329|ref|ZP_06207403.1| transcription-repair coupling factor [Yersinia pestis KIM D27] gi|270338833|gb|EFA49610.1| transcription-repair coupling factor [Yersinia pestis KIM D27] Length = 901 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 231 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 282 >gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|315932222|gb|EFV11165.1| carD-like/TRCF domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 90 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G++IV+ +GVG ++ ++G K EF I + L +PV Sbjct: 7 KNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSD-KLLLPVEN 54 >gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 1130 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 461 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 518 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 519 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 561 >gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|154496044|ref|ZP_02034740.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC 29799] gi|150274599|gb|EDN01663.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC 29799] Length = 1169 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + + V G++ ++ IA+ + L VP + + Sbjct: 492 SVGDLVVHEHHGIGRYQGMVKMPVDGIQKDYVKIAYAGADV-LYVPATQLDLV 543 >gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum SV96] gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum SV96] Length = 1155 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G +V+ HGVG ++ E+ G+ EF + + L VPV IG Sbjct: 484 IGSPVVHQEHGVGRYLGLQTLEIGGIASEFLTLEYANHD-KLYVPVSSLHVIG 535 >gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27] gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27] Length = 1098 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G +K E G+ ++ IA+ L +P + Sbjct: 427 PGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPANNLDQL 477 >gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1148 Score = 39.0 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R + +V+ HGVG + E G+K E+ ++++ + L VPV I R Sbjct: 477 RPSQPVVHLEHGVGRYQGLTTLEAGGIKAEYLILSYAGND-KLYVPVSSLHLIS-RYAGG 534 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 A L + G+A W++ Q+ K+ Sbjct: 535 ADE-NAPLHKLGGEA------WNKARQKAAEKVR 561 >gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1148 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165] gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165] Length = 1217 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 552 KIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYA-NDAKLYVPVASLHLIS-RYIGG 609 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 L + +A W++ Q+ KI D+ AE++ + ++Q ++ Sbjct: 610 TDE-NAPLHKLGSEA------WAKTRQKAAEKIR--DV--AAELLDVYAKREAQKGFAFE 658 >gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis subsp. sepedonicus] gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis subsp. sepedonicus] Length = 1210 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG-------MKLEFFVIAFDKD 53 + ++K + G+H+V+ HG+G E+ ++EV+ + E+ VI + Sbjct: 504 LATRRKNVVDPLQLKPGDHVVHTTHGIGKFVELTQREVSSGGRDTVKTRREYLVIEYAPS 563 Query: 54 KM-----CLKVPVGKAIDIGMRKLSEAH 76 K L VP + + R + Sbjct: 564 KRGYPGDKLFVPTDQLDLLS-RYVGGEE 590 >gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1148 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1148 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor obsidiansis OB47] gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor obsidiansis OB47] Length = 1143 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ +G+G ++ V G E+ + + + L VP I Sbjct: 483 KPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDMI 534 >gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes 130Z] gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes 130Z] Length = 1148 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 14/128 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + Sbjct: 482 KIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLTYA-NDAKLYVPVAGLHLIS-RYVGG 539 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 ++ WS+ ++ KI D+ AE++ + ++Q ++ Sbjct: 540 NEETAPL-------HKLGSDAWSKARRKAAEKIR--DV--AAELLDVYAQREAQKGFAFQ 588 Query: 135 -ERQLYES 141 ER+ +++ Sbjct: 589 YEREEFQA 596 >gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305] gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305] Length = 1150 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYA-NDAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 L + +A W++ Q+ KI D+ AE++ + +SQ ++ Sbjct: 542 TDE-NAPLHKLGSEA------WAKTRQKAAEKIR--DV--AAELLDVYAKRESQKGFAFE 590 >gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1148 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp. mediasiatica FSC147] Length = 1141 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 + G H+V+ HG+G ++ E+ G K EF ++ + + + VP+ I + Sbjct: 475 KPGMHVVHIDHGIGRYGGLESIELNGKKDEFILLRYA-NDAKIYVPITSLNLISI 528 >gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC BAA-286] Length = 1108 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 26/125 (20%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F+ G++IV+ HGVG + ++ G E + + + Sbjct: 424 QQFQIGDYIVHIDHGVGQFGGLVRSDMNGKMQELIKLIYLNNDSIF-------------- 469 Query: 72 LSEAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 H + + K + R W++ K S + IA + L+ Sbjct: 470 -VSLHALHKISKYRGKEGEPPRINKLGTGAWNK----IKEKTKS-KVKDIARDLIQLYAK 523 Query: 126 DSQPE 130 Q E Sbjct: 524 RRQEE 528 >gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1148 Score = 38.6 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|315452882|ref|YP_004073152.1| transcription-repair coupling factor [Helicobacter felis ATCC 49179] gi|315131934|emb|CBY82562.1| transcription-repair coupling factor [Helicobacter felis ATCC 49179] Length = 988 Score = 38.6 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ +GVG + +Q + G +F + + L VPV Sbjct: 361 GDFVVHEDYGVGIFQGLVQQNILGSVRDFIALEYQNHD-RLFVPVEN 406 >gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC BAA-798] gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC BAA-798] Length = 1150 Score = 38.6 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G ++V+ HGV + +G + E+ V+ + L VPV + I Sbjct: 481 QPGSYVVHVDHGVAKYVGNVMRGSSGAEREYLVLEYAGGD-RLYVPVDQIDRI 532 >gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017] gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017] Length = 1164 Score = 38.6 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 +K D + + G+ +V+ HG+G +++ + E+ V+ + + + Sbjct: 479 ATSKKVDPNK--LQPGDFVVHRNHGIGKFLKLESLTLNHETREYLVLQYADGTLRV 532 >gi|319408599|emb|CBI82254.1| transcription repair coupling factor [Bartonella schoenbuchensis R1] Length = 1166 Score = 38.6 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K AG+ + I + + L +PV + R + Sbjct: 499 GDIVVHVDHGIGQFIGLKTIMTAGILRDCLEINYAEGD-RLFLPVENIELLS-RY--GSE 554 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + L + G A R R +++ KI G LI IA Sbjct: 555 DTDVTLDKLGGVAWQTR---KARLKKHLLKIA-GQLIRIA 590 >gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] Length = 1112 Score = 38.6 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 6 KRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +R + F RTG+ +V+ HG+ + VAG+ ++ + + PV Sbjct: 435 RRRGALRSFTDLRTGDIVVHEDHGLARFAGFDTKTVAGVTRDYLNLEYAGSDKVFM-PVD 493 Query: 63 KAIDI 67 + I Sbjct: 494 QFAKI 498 >gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B] gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B] Length = 1155 Score = 38.6 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HGVG ++ + G+ E+ + + L VPV Sbjct: 482 KVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVS 528 >gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8] gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8] Length = 1298 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 17/118 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K+ V + E + F + + L V V + K + Sbjct: 612 GDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDV-LYVNVHALHKLN--KYTGKE 668 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + + W ++ Q ++ EV RDL + ++ + S Sbjct: 669 GHQPTLTKLGSE------QWEKKKQRTKDQVK--------EVARDLIKLYAKRKASDG 712 >gi|213617524|ref|ZP_03372350.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 240 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 107 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 164 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 165 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 207 >gi|213420794|ref|ZP_03353860.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 367 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 54 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 111 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 112 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 154 >gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073] gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073] Length = 951 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|293394425|ref|ZP_06638723.1| hypothetical protein HMPREF0758_2059 [Serratia odorifera DSM 4582] gi|291423050|gb|EFE96281.1| hypothetical protein HMPREF0758_2059 [Serratia odorifera DSM 4582] Length = 495 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 16/87 (18%) Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161 AK+ +G L A VVR L R + R+ E+A ++I A Sbjct: 357 ANLAKLKTGSLAVTAGVVRALQRDPDNAAL-----------VGRLASELAMADTI--ETA 403 Query: 162 ---INLIEVNLSSKSSKTEKSTSENQD 185 +I +S ++ +K + D Sbjct: 404 FLMRRMITTGMSEPNAAAQKVAMQEGD 430 >gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102] gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102] Length = 1192 Score = 38.6 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R R G+ +V+ HG+G +++ V+G ++ V+ + + + Sbjct: 487 RKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAVSGDVRDYLVVQYADGLLRV 542 >gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1143 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+K E+ + + + L VPV I Sbjct: 474 QIGQPVVHIDHGIGRYQGLQTLEAGGIKTEYVTLEY-QGGAKLYVPVASLHLI 525 >gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 1049 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 380 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 437 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 438 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 480 >gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis HTCC2601] gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601] Length = 1158 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 Q G +V+ HG+G ++ AG E ++ + + L +PV Sbjct: 478 TEAQSLTPGNLVVHVDHGIGRYQGMEVISAAGAAHECLLLEYAEGA-RLYLPVENIE--- 533 Query: 69 MRKLSEAHFVER-ALKLVRGKA-RVKRTMWSRRAQEYDAKI 107 L + + L + G A + K+ R +E K+ Sbjct: 534 ---LLSRYGHDEGLLDRLGGGAWQAKKARLKERIREMADKL 571 >gi|319937741|ref|ZP_08012144.1| hypothetical protein HMPREF9488_02980 [Coprobacillus sp. 29_1] gi|319807176|gb|EFW03790.1| hypothetical protein HMPREF9488_02980 [Coprobacillus sp. 29_1] Length = 148 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 19/156 (12%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72 + ++IVY G+ + E++ +V I + RK+ Sbjct: 1 MYDQNDYIVY-QDGIARVIEVENNQVIIEDYISQEIKNINHHHII------------RKI 47 Query: 73 SEAHFVERALK---LVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 ++ L+ +R ++ + QE K D + +V++ ++ + Sbjct: 48 CSLETIKDILERIEFIRTVYAPQKKVLEELYQEAMMKY---DELEWVKVIKSVYVREKMK 104 Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 + ER A + + EI+ + I E E I Sbjct: 105 KAYSFERAYRIQAEHFLNSEISILLQIPEEEVNQYI 140 >gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor hydrothermalis 108] gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor hydrothermalis 108] Length = 1141 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ +G+G ++ V G E+ + + + L VP I Sbjct: 483 KPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDVI 534 >gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799] gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799] Length = 1156 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HG+G ++ E G++ EF ++ + L VPV Sbjct: 482 KVGQPVVHLKHGIGRYLGLETLEAGGLESEFLMLEY-GGGSKLYVPVN 528 >gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus c2] gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus c2] Length = 1159 Score = 38.6 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG + E+ G+ EF ++ + D L VPV I Sbjct: 489 GAPVVHETHGVGRFGGLVTLEMNGLAQEFLILYYAGDD-KLYVPVSSLELI 538 >gi|144897813|emb|CAM74677.1| Transcription-repair coupling factor (superfamily II helicase) [Magnetospirillum gryphiswaldense MSR-1] Length = 1098 Score = 38.6 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G+ +V+ HG+G + +V+G + + +D L VPV Sbjct: 424 AEASALAEGDLVVHLEHGIGRYDGLVTLQVSGAPHDCLRVIYDGGD-KLFVPVENIE 479 >gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212] gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212] Length = 1157 Score = 38.6 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|213860062|ref|ZP_03385766.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 919 Score = 38.6 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 251 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 308 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 309 EE-SAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 351 >gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149] gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149] Length = 1121 Score = 38.6 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 22/39 (56%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 443 KVGDYVVHENHGLGIYQGIEKIEVDKITKDYMKISYAGG 481 >gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334] gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334] Length = 1157 Score = 38.6 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331] gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331] Length = 1157 Score = 38.6 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755] gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755] Length = 1149 Score = 38.6 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYA-NDAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 L + +A W++ Q+ KI D+ AE++ + ++Q ++ Sbjct: 542 TDE-NAPLHKLGSEA------WAKTRQKAAEKIR--DV--AAELLDVYAKREAQKGFAFE 590 >gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5] gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5] Length = 1134 Score = 38.6 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 21/119 (17%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKL-EFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 GE +V+ HG+G +++ E+ G +F I + + L +PV + + Sbjct: 472 GEFVVHKDHGIGQFLKLEALEIKGKPQHDFLKILYAGND-KLYIPVESIE------VIKK 524 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + A ++ W +R++ K+ I E+ L + ++ + + S Sbjct: 525 YGNDNA-----ELDKLGSVSW-QRSKA---KLK----NRIKEIALHLIQIAAKRKLNSS 570 >gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway 5J108-111] gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway 5J108-111] Length = 1157 Score = 38.6 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|124266762|ref|YP_001020766.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1] gi|124259537|gb|ABM94531.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1] Length = 1184 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + ++ EF + + DK L VPV + I Sbjct: 512 KVGDPVVHANHGIGRYVGLVNIDLGDGPSEFLHLEYA-DKATLYVPVAQLQLI 563 >gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H] gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H] Length = 1207 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 G+ +V+ HG+G ++ E G+ EF V+++ ++ L VPV IG Sbjct: 542 IGQPVVHIEHGIGRYLGLQTIENGGIVTEFLVLSYA-NEAKLYVPVSSLHLIG 593 >gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus HD100] gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus HD100] Length = 1172 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 6 KRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++ A R F + G+ +V+ HG+G +K ++G++ E+ + + KDK L +PV Sbjct: 502 QKQAKRLSFGDLKPGDLVVHTKHGIGQYEGLKIMNISGVESEYIQVGY-KDKDKLYLPVY 560 Query: 63 KAIDI 67 + + Sbjct: 561 RVGQL 565 >gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat Q177'] gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154] gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat Q177'] gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154] Length = 1157 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493] gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493] Length = 1157 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG ++ + + + E+ + + + + VPV Sbjct: 493 IGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSS 539 >gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio nitroreducens DSM 19672] Length = 1098 Score = 38.6 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 9/84 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 G+++V+ +G+G ++ + + G++ ++ I ++ ++ L V + ++K Sbjct: 445 EPGDYVVHIDYGIGIFRGLEHKTIGGIEGDYIAIEYEGGEL-LFVSLENI--SHIQKYIG 501 Query: 75 AHFVERALKLVRGKARVKRTMWSR 98 V L ++ T W + Sbjct: 502 KGDVAVKLNSLQ------NTRWKK 519 >gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] Length = 1177 Score = 38.6 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 R ++IV+ HG+G +++ V E+ VI + L+VPV + Sbjct: 507 RPKDYIVHRNHGIGQFLKLESLTVDKETREYLVIQYADG--LLRVPVDQ 553 >gi|167468531|ref|ZP_02333235.1| transcription-repair coupling factor [Yersinia pestis FV-1] Length = 776 Score = 38.6 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 106 RPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLI 157 >gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum SS14] gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum SS14] Length = 1140 Score = 38.6 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 + Q+ R F G+++V+ +G+G I+ + A + ++ + + +++ + Sbjct: 461 SVQRARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEE-TIL 519 Query: 59 VPVGKAIDI 67 +P+ +A + Sbjct: 520 IPIEQAHLV 528 >gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 1155 Score = 38.6 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 + Q+ R F G+++V+ +G+G I+ + A + ++ + + +++ + Sbjct: 476 SVQRARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEE-TIL 534 Query: 59 VPVGKAIDI 67 +P+ +A + Sbjct: 535 IPIEQAHLV 543 >gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM 22836] Length = 1108 Score = 38.2 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 29/126 (23%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F+ G++IV+ HGVG + ++ G E + + + + Sbjct: 423 QQFQIGDYIVHIDHGVGQFGGLVRSDMNGKMQELIKLIYLNNDVIF-------------- 468 Query: 72 LSEAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 H + + K + R W+ KI + ++ RDL + Sbjct: 469 -VSLHSLHKISKYRGKEGEPPRINKLGTGAWN--------KIKEKTKNKVKDIARDLIQL 519 Query: 126 DSQPEK 131 ++ + Sbjct: 520 YAKRRQ 525 >gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium HTCC2181] gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium HTCC2181] Length = 1133 Score = 38.2 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + + + EF V+ +DK L VPV + + Sbjct: 467 SIGDPVVHEQHGVGRYQGLVDLDYGDGMTEFLVLHYDKQD-KLYVPVSQLHLV 518 >gi|213582461|ref|ZP_03364287.1| transcription-repair coupling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 283 Score = 38.2 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 227 VGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLI 277 >gi|219872168|ref|YP_002476543.1| type III restriction enzyme, res subunit [Haemophilus parasuis SH0165] gi|219692372|gb|ACL33595.1| type III restriction enzyme, res subunit [Haemophilus parasuis SH0165] Length = 1048 Score = 38.2 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 27/152 (17%) Query: 29 TITEIKEQEVAGMKLEFFVIAFDKDK------MCLKVPVGKAIDIGMRKLSEAHFVERAL 82 T+ I+ Q ++G ++ + K + L++ +RK+S+ + Sbjct: 301 TVKGIEVQNLSGTSGYLYLENIEISKSLPIARLELEIATKNGFKREIRKISKGDNLFEIT 360 Query: 83 KLVR-GKARVKRTMWSRRAQE------YDAKINSG----DLIAIAEVVRDLHRTDSQPEK 131 K + + V+ +E KI+ G D+ A VR + ++ Sbjct: 361 KAQQYHRYVVEDIN----FRESTVYFTNGVKIHIGEALGDVNETA--VRTIQIRETIRSH 414 Query: 132 SYSERQLYESALNRM----VREIAAVNSISEP 159 ERQL++ + + + E+A E Sbjct: 415 LIKERQLFDRGIKVLSLFFIDEVAKYRQYDED 446 >gi|222112255|ref|YP_002554519.1| flagellin domain-containing protein [Acidovorax ebreus TPSY] gi|221731699|gb|ACM34519.1| flagellin domain protein [Acidovorax ebreus TPSY] Length = 490 Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166 SGD++ VR+L + S S+RQ ++ + ++V E+ ++ +E L++ Sbjct: 84 ASGDILQR---VRELAVQSANASNSASDRQALQAEVGQLVSELDRISQTTEFNGTKLLD 139 >gi|269977848|ref|ZP_06184804.1| crispr-associated protein, Csn1 family [Mobiluncus mulieris 28-1] gi|269933928|gb|EEZ90506.1| crispr-associated protein, Csn1 family [Mobiluncus mulieris 28-1] Length = 1091 Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Query: 108 NSGDLIA----IAEVVRDLHRTDSQPE----KSYSERQLYESALNRMVREIAAVNSISEP 159 +GD+ + AEV+ DL S RQ ++A R+IA+V I + Sbjct: 168 KTGDVFSDDATPAEVLVDLMGRQKVRGADGVLSGKLRQS-DNANEL--RKIASVQGIDDE 224 Query: 160 EAINLIEVNLSSKSSKTEKSTSENQDK 186 +I+ SSKS K + S D Sbjct: 225 TLNRIIDRVFSSKSPKGKASERVGMDA 251 >gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans OS217] gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans OS217] Length = 1179 Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 + Q++RD +Q + G+ IV+ HGV ++ + G+ E+ + Sbjct: 482 IAQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLE 541 Query: 50 FDKDKMCLKVPVGKAIDI 67 + L VPV I Sbjct: 542 YAGGD-KLYVPVSSLHLI 558 >gi|307700167|ref|ZP_07637211.1| CRISPR-associated protein, Csn1 family [Mobiluncus mulieris FB024-16] gi|307614650|gb|EFN93875.1| CRISPR-associated protein, Csn1 family [Mobiluncus mulieris FB024-16] Length = 1091 Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Query: 108 NSGDLIA----IAEVVRDLHRTDSQPE----KSYSERQLYESALNRMVREIAAVNSISEP 159 +GD+ + AEV+ DL S RQ ++A R+IA+V I + Sbjct: 168 KTGDVFSDDATPAEVLVDLMGRQKVRGADGVLSGKLRQS-DNANEL--RKIASVQGIDDE 224 Query: 160 EAINLIEVNLSSKSSKTEKSTSENQDK 186 +I+ SSKS K + S D Sbjct: 225 TLNRIIDRVFSSKSPKGKASERVGMDA 251 >gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1194 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739] gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739] Length = 1164 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509] Length = 1148 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252] Length = 1148 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357] Length = 1148 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor kronotskyensis 2002] Length = 1141 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ +G+G ++ V G E+ + + + L VP I Sbjct: 483 KPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYA-NSSYLYVPTTNLDVI 534 >gi|229829380|ref|ZP_04455449.1| hypothetical protein GCWU000342_01469 [Shuttleworthia satelles DSM 14600] gi|229792543|gb|EEP28657.1| hypothetical protein GCWU000342_01469 [Shuttleworthia satelles DSM 14600] Length = 395 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 22/103 (21%) Query: 99 RAQEYDAKINSGDLIAIAEV----------VRDLHRTDSQPEKSYSER----QLYESALN 144 R + + +G+L + EV +++L + E S ER QL Sbjct: 65 RRRTLENIARAGNLEELNEVRLTVLGKRGELKELMKG--MRELSAEERPKFGQLVNDVRQ 122 Query: 145 RMVREIAAVNSISEPE------AINLIEVNLSSKSSKTEKSTS 181 + +E+A S E E A I+V L +K K Sbjct: 123 MVEQELADRKSKMEEELLNRKLASETIDVTLPAKKIKLGHRHP 165 >gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor Length = 1151 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 482 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 539 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 540 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 582 >gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638] gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638] Length = 1148 Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299] gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718] gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1] Length = 1169 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1] gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1] gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1] gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1] gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1] gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7] gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1] gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1] gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1] gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7] gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str. E2348/69] gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75] gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str. E2348/69] gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75] gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012] gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227] gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227] gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC 74-1112] gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83] gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9] gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9] Length = 1169 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280] gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii ECD227] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863] gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1] gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W] gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1] gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W] gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W] gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11] gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7] gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591] gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7] gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1] gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1] gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1] gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412] gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302] gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1] gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412] gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302] gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088] gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271] gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088] gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B] gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017] Length = 1169 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1] gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1] gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1] gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736] gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1] gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1] gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1] gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1] gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82] gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str. NRG 857C] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a] gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88] gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88] gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034] gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146] gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC 35469] gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC 35469] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627] gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5] gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1] gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli APEC O1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536] gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1] gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536] gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1] gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89] gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA] gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli UTI89] gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA] Length = 1169 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046] gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046] gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str. 2457T] gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70] gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71] gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671] gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71] gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218] gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. Sakai] gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4113] gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4401] gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4501] gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4486] gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4076] gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC869] gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC508] gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4024] gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4206] gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4045] gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4042] gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4115] gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14588] gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14359] gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. FRIK2000] gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. FRIK966] gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. CB9615] gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. Sakai] gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4113] gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4076] gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4401] gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4486] gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4501] gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC869] gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC508] gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4206] gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4045] gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4042] gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. EC4115] gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli] gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli] gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli] gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli] gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14588] gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. TW14359] gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. CB9615] gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. EC1212] gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. G5101] gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str. 493-89] gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str. H 2687] gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str. USDA 5905] gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str. LSU-61] gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. 1044] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. MG1655] gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. W3110] gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. DH10B] gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952] gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B] gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736] gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12 substr. W3110] gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. MG1655] gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12 substr. DH10B] gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952] gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407] gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520] gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A] gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11] gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1] gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989] gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11 str. 11368] gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A] gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11] gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989] gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1] gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11 str. 11368] gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14] gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68] gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22] gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171] gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2 str. 12009] gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22] gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171] gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2 str. 12009] gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94] gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272] gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H- str. 11128] gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H- str. 11128] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli] gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str. 1125] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972] gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1] gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972] gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1] gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972] gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product [Escherichia coli, Peptide, 1148 aa] Length = 1148 Score = 38.2 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605] gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605] Length = 1164 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101] gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1] gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1] Length = 1164 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 595 >gi|283954648|ref|ZP_06372166.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 414] gi|283793840|gb|EFC32591.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Campylobacter jejuni subsp. jejuni 414] Length = 640 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G++IV+ +GVG ++ V+G K EF I + L +PV Sbjct: 7 KNGDYIVHEDYGVGKFLGLEMIVVSGSKKEFVAIEYQNSD-KLLLPVEN 54 >gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str. REL606] gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)] gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str. REL606] gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401] gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401] Length = 1169 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 500 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 557 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 558 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 600 >gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301] gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11] gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS] gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70] gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS] gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A] gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019] gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A] gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019] gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167] Length = 1148 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] Length = 1147 Score = 38.2 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 R G+++V+ HG+G +++ + ++ V+ + + + A +G Sbjct: 467 RPGDYVVHRQHGIGKFLKLESLTINNETRDYLVVQYGDGLLRV-----AADQVG 515 >gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327] Length = 1148 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39] gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354] gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39] gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354] Length = 1148 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99] gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99] Length = 1161 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ + + L VPV I R Sbjct: 490 KVGQPIVHLDHGVAKYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVSSLHLIS-RYSVG 547 Query: 75 AHF 77 Sbjct: 548 PDE 550 >gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis L2-32] gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis L2-32] Length = 1188 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GM---KLEFFVIAFDKDKM----- 55 +++ +TG ++V+ HG+G E++++ + G E+ VI + K Sbjct: 498 RRKAIDLMELKTGNYVVHEQHGIGRFVEMRQRTIGKGENQTTREYLVIEYAPSKRGAPAD 557 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 558 KLFIPTDQLDQV 569 >gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1] gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1] Length = 1148 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] Length = 1241 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 571 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 622 >gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332] gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332] Length = 1241 Score = 38.2 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 571 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 622 >gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489] gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007] gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli UMNK88] Length = 1148 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143] gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143] Length = 1148 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] Length = 1241 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 571 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 622 >gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18] gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18] Length = 1241 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 571 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 622 >gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA19] gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae MS11] gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID1] gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID332] gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19] gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA6140] gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae SK-92-679] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae DGI18] gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID24-1] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026] gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026] Length = 1148 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31] gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31] Length = 1155 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G +K +V G + + + L +PV + Sbjct: 478 AEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDL-LYGGEAKLYLPVENIDLL- 535 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRR---AQEYDAKINSGDLIAIA 116 R ++A V+ L + G A W R A+E + G LI IA Sbjct: 536 TRYGTDAENVQ--LDKLGGAA------WQGRKSKAKERLRVMAEG-LIQIA 577 >gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1241 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HG+G ++ EV G++ ++ +++ + L +P+ + Sbjct: 559 RPGDLVVHDIHGIGIYKGLRSVEVDGVRRDYIWLSYANND-ELYLPMEALDQL 610 >gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae SK-93-1035] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002] gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC 7002] Length = 1162 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++IV+ +HG+G +I+ E+ V+ + L++P + Sbjct: 497 NPGDYIVHKSHGIGRFIKIETL----QSREYLVLKYADG--ILRIPADSLDTL 543 >gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA 1090] gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae FA 1090] Length = 1234 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC 27679] gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium JCVIHMP022] gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC 27679] gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium JCVIHMP022] Length = 1173 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM----- 55 +++ ++G+++V+ HG+G E++++ + G E+ VI + K Sbjct: 483 RRKAIDLMELKSGDYVVHEQHGIGRFVEMRQRTIGTGANKTTREYLVIEYAPSKRGAPAD 542 Query: 56 CLKVPVGKAIDI 67 L +P + I Sbjct: 543 KLFIPTDQLDQI 554 >gi|305431881|ref|ZP_07401048.1| transcription-repair coupling factor [Campylobacter coli JV20] gi|304444965|gb|EFM37611.1| transcription-repair coupling factor [Campylobacter coli JV20] Length = 978 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 +++K + + + G+ IV+ +GVG ++ ++ K EF I + L +PV Sbjct: 333 YKRKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISEAKKEFVAIEYQNSD-KLLLPVE 391 Query: 63 K 63 Sbjct: 392 N 392 >gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02] gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae TCDC-NG08107] Length = 1234 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM 20213] gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM 20213] Length = 1196 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 517 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 576 Query: 66 DI 67 + Sbjct: 577 QV 578 >gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1142 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ +GVG +K Q +F + + D L VP+ I Sbjct: 477 KMGDAIVHENYGVGRYLGLKPQIFDDQSQDFLTLEYA-DNAKLMVPITSLNLI 528 >gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7 EDL933] gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline [Escherichia coli O157:H7 str. EDL933] Length = 1148 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae NCCP11945] gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID18] gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae NCCP11945] Length = 1234 Score = 38.2 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum F8] Length = 1194 Score = 38.2 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 1194 Score = 38.2 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 1154 Score = 38.2 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG ++ + G+ EF + + L VPV I Sbjct: 488 GQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPVTNLHLI 537 >gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] Length = 1194 Score = 38.2 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JCM 1217] Length = 1194 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp. 12_1_47BFAA] gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp. 12_1_47BFAA] Length = 1194 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68] gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68] Length = 1194 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1] gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1] Length = 1202 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM----- 55 +++ + G+ +V+ HG+G +K++ +A E+ VI + K Sbjct: 518 RRKAIDLMELKPGDFVVHEQHGIGCFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPND 577 Query: 56 CLKVPVGKAIDI 67 L +P + + Sbjct: 578 KLFIPTDQLDLV 589 >gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1194 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705] gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705] Length = 1194 Score = 38.2 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886] gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886] Length = 1154 Score = 38.2 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HGVG ++ E G+ E+ + + + L VPV I Sbjct: 483 QIGQPVVHLEHGVGRYLGLQTLEAGGITTEYMTLEYQQGA-KLYVPVASLHLI 534 >gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis CGDNIH1] gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis CGDNIH1] Length = 1149 Score = 38.2 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G + V+G + + +D + L +PV M A Sbjct: 474 GDLVVHQDHGIGRYDGLVTLTVSGAPHDCLRLLYDGND-KLFLPVENIE---MLSRFGAE 529 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKIN--SGDLIAIA 116 AL + G W R + +I +G+LI IA Sbjct: 530 TAGVALDKLGG------VSWQSRKAKMKQRIRDMAGELIRIA 565 >gi|121611311|ref|YP_999118.1| flagellin domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121555951|gb|ABM60100.1| flagellin domain protein [Verminephrobacter eiseniae EF01-2] Length = 501 Score = 38.2 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 109 SGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 SGD++ VR+L + S S+RQ ++ ++++V E+ + +E LI+ + Sbjct: 85 SGDILQR---VRELAVQSANATNSSSDRQALQAEVSQLVSELDRIAQTTEFNGAKLIDGS 141 Query: 169 LSSKS 173 ++ Sbjct: 142 FGTQP 146 >gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] Length = 1156 Score = 38.2 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 490 SIGDPVVHEEHGIGRYIGLVSMDLGGEAQEMMLLEYA-GEAQLYVPVSQLHLI 541 >gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM 20745] gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM 20745] Length = 1173 Score = 38.2 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+ + EV+G++ E+ ++ + + L +PV + I Sbjct: 508 PGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAAND-RLYLPVDQIDRI 558 >gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96] gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96] gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163] Length = 1148 Score = 38.2 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 22/130 (16%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++++ L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLSYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS- 134 L + A WSR Q+ K+ +V +L +Q Sbjct: 537 EE-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQRAAKTGF 581 Query: 135 ----ERQLYE 140 ++Q Y+ Sbjct: 582 AFKHDKQQYQ 591 >gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855] gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855] Length = 1142 Score = 38.2 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 17/118 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HG+G +K+ V + E + F + + L V V + K + Sbjct: 456 GDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDV-LYVNVHALHKLN--KYTGKE 512 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + L + + W ++ Q ++ EV RDL + ++ + S Sbjct: 513 GHQPTLTKLGSE------QWEKKKQRTKDQVK--------EVARDLIKLYAKRKASDG 556 >gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase mfd) [Thiomonas sp. 3As] Length = 1160 Score = 37.8 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G + E ++ EF + + L VPV + IG Sbjct: 487 QPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHL-VYANDAVLYVPVSQLHLIG 539 >gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM 3043] gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM 3043] Length = 1150 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ +HGVG ++ E G EF + + L VPV I Sbjct: 479 RPGAPVVHQSHGVGRYQGLETLEAGGQAAEFLALEYA-GGAKLYVPVDSLHLI 530 >gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1] gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1] Length = 1164 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 495 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 552 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 553 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAGLLDIYAQRAAKE 595 >gi|208435421|ref|YP_002267087.1| transcription-repair coupling factor [Helicobacter pylori G27] gi|208433350|gb|ACI28221.1| transcription-repair coupling factor [Helicobacter pylori G27] Length = 999 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------IKDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIEL-AAERNLILGKKMDVHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602] gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602] Length = 1147 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGED-KLYVPVSSLHLI 529 >gi|222824038|ref|YP_002575612.1| transcription-repair coupling factor [Campylobacter lari RM2100] gi|222539260|gb|ACM64361.1| transcription-repair coupling factor [Campylobacter lari RM2100] Length = 979 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 R G+ +V+ +G+ ++ +AG K EF + + + L +PV Sbjct: 344 RVGDFVVHEDYGIAKFLGLEIIIIAGAKKEFVALGYLNND-KLLLPVEN 391 >gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202] gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202] Length = 1151 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYA-NDAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 L + + W++ Q+ KI D+ AE++ + ++Q ++ Sbjct: 542 TDE-NAPLHKLGSEV------WAKTRQKAAEKIR--DV--AAELLDVYAKREAQKGFAFE 590 >gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1] gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1] Length = 1162 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G +V+ HGVG ++ + G EF + + L VPV I Sbjct: 486 KIGAPVVHIEHGVGRYHGLQTLTIDGQAQEFLTLEYA-GGSKLYVPVASLQLI 537 >gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12] gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12] Length = 1160 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G + E ++ EF + + L VPV + IG Sbjct: 487 QPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHL-VYANDAVLYVPVSQLHLIG 539 >gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396] gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396] Length = 1149 Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + +V+ HG+G ++ EV G K EF V+ + ++ L VPV +S Sbjct: 480 KLNAPVVHIDHGIGRYKGLQSLEVDGQKQEFLVLEYA-NEAKLYVPVSSLHL-----ISR 533 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 ++ L + + WS ++ KI Sbjct: 534 YAGLDDKLAPINKLGTDR---WSAAKRQAAEKIK 564 >gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1] Length = 1188 Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 G+++V+ +G+G +++ EV G ++ VI + + Sbjct: 509 SVGDYVVHEKYGIGIYRGLEKIEVDGALKDYLVIEYAEGG 548 >gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus ATCC 51172] gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus ATCC 51172] Length = 1162 Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G + + E ++ +F +I + + L +PV + + Sbjct: 497 EIGDYVVHENNGIGIYKGLTKIERNDVEKDFILIEYRGND-KLYIPVDQMNLV 548 >gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis BB-12] Length = 1248 Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-- 55 ++++ + G+ +V+ HG+G E++++ E+ VI + K Sbjct: 555 ARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNA 614 Query: 56 ---CLKVPVGKAIDI 67 L +P + + Sbjct: 615 PPDKLFIPTDQLDQV 629 >gi|145219954|ref|YP_001130663.1| transcription-repair coupling factor [Prosthecochloris vibrioformis DSM 265] gi|145206118|gb|ABP37161.1| transcription-repair coupling factor [Chlorobium phaeovibrioides DSM 265] Length = 1112 Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 Q + G+ +V+ +G+G ++ + E ++ ++ L V +I + Sbjct: 412 QKLKVGDFVVHEDYGIGRFKALETITAGNSEQECVLVEYEGGD-QLFV---NVQNINL 465 >gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1] Length = 1176 Score = 37.8 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 T++ ++ A G+++V+ HG+G I++ EV ++ I + Sbjct: 491 TYEGEKIASFTDLNIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAGGG 543 >gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] Length = 1176 Score = 37.8 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 T++ ++ A G+++V+ HG+G I++ EV ++ I + Sbjct: 491 TYEGEKIASFTDLNIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAGGG 543 >gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila WSU 86-1044] gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila WSU 86-1044] Length = 1092 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVP 60 + GE +V+ +G+G ++++ G+ EFF+I + D L VP Sbjct: 437 STYHTTPTDVHDLTPGEVVVHLNNGLGKFIGLEKRPNHLGIDSEFFLIEYA-DDAKLYVP 495 Query: 61 VGKAIDI 67 V +A I Sbjct: 496 VNQAHLI 502 >gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1] gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1] Length = 1154 Score = 37.8 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G++ E+ ++++ + L VPV I Sbjct: 486 PGQPVVHLEHGVGRYIGLTTLEAGGIEAEYLMLSYA-NDAKLYVPVSSLHLI 536 >gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2] gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2] Length = 1165 Score = 37.8 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + + + + G+ +V+ HG+G + ++ G+ +F +I+F D L +PV + Sbjct: 487 AKSQFITPEELKEGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDD-RLYLPVDR 545 Query: 64 AIDI 67 + Sbjct: 546 MEMV 549 >gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 1145 Score = 37.8 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + V + +++ L VPV + Sbjct: 475 SIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGD-KLYVPVENIDTL 526 >gi|329889842|ref|ZP_08268185.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC 11568] gi|328845143|gb|EGF94707.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC 11568] Length = 744 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 15/121 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A G+ +V+ HG+G ++ E+ + + + L +PV + Sbjct: 70 AEASALTAGDLVVHLDHGIGRYEGLRTLEIQEAPHDCLEL-LYAGESKLYLPVENIDLL- 127 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRR---AQEYDAKINSGDLIAIAEVVRDLHRT 125 R ++A V+ L + G W R A+E + G + A+ R L + Sbjct: 128 TRYGTDAEGVQ--LDRLGG------AGWQARKAKAKERLRAMAEGLIALAAK--RALRVS 177 Query: 126 D 126 D Sbjct: 178 D 178 >gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense DSM 14796] gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense DSM 14796] Length = 1111 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 27/161 (16%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + K + Q + + +V+ HG+G +K ++ E+ I + + L +PV Sbjct: 449 TRHKNISSLQELQYNDLVVHTDHGIGRFIGLKLMNFTKIQREYAQILYKDGDI-LYIPVE 507 Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMW---SRRAQEYDAKINSGDLIAIAEVV 119 + K E L +R W +RA+++ KI I V Sbjct: 508 --EFTRLSKYIGPDDAE--LSSLR------SNDWTSKKKRAKDFAEKIA----HEI--VF 551 Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPE 160 + R + Q +Y ++ N + E+ S E Sbjct: 552 IEASRRNVQRP-------IYSNSKNPTIEELELKESFGYEE 585 >gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] Length = 1290 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 624 SIGDPVVHEEHGIGRYMGLVSMDLGGEAQEMMLLEYA-GEAQLYVPVSQLHLI 675 >gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168] gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168] Length = 1148 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15] gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus NA1000] gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15] gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus NA1000] Length = 1155 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G+ +V+ HG+G +K +V G + + + L +PV Sbjct: 478 AEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDL-LYGGEAKLYLPVENID 533 >gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756] gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756] Length = 1155 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G+ +V+ HG+G +K +V G + + + L +PV Sbjct: 478 AEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDL-LYGGEAKLYLPVENID 533 >gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis M01-240355] Length = 1374 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 706 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEY-SGEAQLYVPVSQLHLI 757 >gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581] gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II helicase) [Halomonas elongata DSM 2581] Length = 1148 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ AHGVG ++ E G EF + + D L VPV I Sbjct: 477 RPGAPVVHQAHGVGRYLGLETLETGGQAAEFVALEYA-DGAKLYVPVDSLHLI 528 >gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM 684] gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM 684] Length = 1158 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +++V+ HG+G +++ +GM +F + + M L +PV + + Sbjct: 498 DYVVHADHGIGLYLGLEQLSSSGMSGDFLKLEYAGGDM-LYLPVERIEKV 546 >gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium] Length = 1178 Score = 37.8 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + +V+ HGVG + EV G+K +F +I + L PV + Sbjct: 513 DPVVHADHGVGRYGGLHSLEVGGIKNDFLLIHYAGSD-KLYAPVENLDRV 561 >gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1153 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG + E G+K E+ ++ + L VPV Sbjct: 484 SIGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILTYA-GDAKLYVPVSS 531 >gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus NJ8700] gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus NJ8700] Length = 1151 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + Sbjct: 480 QIGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYA-NDSKLYVPVASLHLIS-RYVGG 537 Query: 75 AHF 77 A Sbjct: 538 ADE 540 >gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC BAA-895] gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895] Length = 1148 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDARLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] Length = 1179 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 +Q K+ G+++V+ +HG+G I++ E + ++ I + L +P Sbjct: 493 AYQGKKIQSFSELAVGDYVVHESHGLGIYRGIEKIEQDKIVKDYIKIEYRDGG-NLYLPA 551 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + G++K + A + L + G T W++ K+ G + IA+ + + Sbjct: 552 TRLE--GIQKYAGADAKQPKLNKLGG------TEWNK----TKTKVR-GAVKEIAKELVE 598 Query: 122 LHRTDSQPE 130 L+ + + E Sbjct: 599 LYASRQESE 607 >gi|320094383|ref|ZP_08026169.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178 str. F0338] gi|319978684|gb|EFW10241.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178 str. F0338] Length = 1194 Score = 37.8 bits (87), Expect = 0.78, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKM- 55 M ++++ G++IV+ HG+G E+ + V A ++ VI + K Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHEQHGIGRFVELVSRTVGRADAAATRDYLVIEYAPSKRG 561 Query: 56 ----CLKVPVGKAIDI 67 L VP I Sbjct: 562 QPGDRLFVPTDALDQI 577 >gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] Length = 1153 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +TG+ +V+ HG+G ++ E GM E+ + + +++ L VPV I Sbjct: 481 QTGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEY-QNEAKLYVPVASLNLI 532 >gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815] gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815] Length = 1164 Score = 37.8 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + + L VPV + Sbjct: 485 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEY-QGDSKLYVPVSQ 532 >gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24] gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24] Length = 1222 Score = 37.8 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAG---MKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+H+V+ HG+G E+ +++VAG E+ V+ + K L VP + + Sbjct: 544 GDHVVHEQHGIGRFVELIQRKVAGGGEGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQV 602 >gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum WAL-14163] gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum WAL-14163] Length = 1179 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 +Q K+ G+++V+ +HG+G I++ E + ++ I + L +P Sbjct: 493 AYQGKKIQSFSELAVGDYVVHESHGLGIYRGIEKIEQDKIVKDYIKIEYRDGG-NLYLPA 551 Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + G++K + A + L + G T W++ K+ G + IA+ + + Sbjct: 552 TRLE--GIQKYAGADARQPKLNKLGG------TEWNK----TKTKVR-GAVKEIAKELVE 598 Query: 122 LHRTDSQPE 130 L+ + + E Sbjct: 599 LYASRQESE 607 >gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC 33393] gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC 33393] Length = 1149 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K E+ ++ + + L VPV I R + Sbjct: 480 QIGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYA-NDSKLYVPVASLHLIS-RYVGG 537 Query: 75 AHF 77 A Sbjct: 538 ADE 540 >gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis HN019] gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis HN019] gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis V9] Length = 1194 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-- 55 ++++ + G+ +V+ HG+G E++++ E+ VI + K Sbjct: 501 ARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNA 560 Query: 56 ---CLKVPVGKAIDI 67 L +P + + Sbjct: 561 PPDKLFIPTDQLDQV 575 >gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] Length = 1115 Score = 37.4 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 444 KVGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYADGG 483 >gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] Length = 1148 Score = 37.4 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 477 RPGQPVVHIEHGVGRYQGLITLEAGGIPAEYLILTYAGED-KLYVPVSSLHLI 528 >gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1113 Score = 37.4 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 442 KVGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYADGG 481 >gi|251772784|gb|EES53346.1| transcription-repair coupling factor [Leptospirillum ferrodiazotrophum] Length = 1145 Score = 37.4 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 42/177 (23%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70 R F G+++V+ G+G ++E V + EF VI + R Sbjct: 473 RPTFADGDYVVHLHQGIGRFRGLQEVSVGANRGEFAVIEYLGGD---------------R 517 Query: 71 KLSEAHFVERALKLVRGKARVKR------TMWSR---RAQEYDAKINSGDLIAIAEVVRD 121 +++ L + R WS+ R ++ KI+ A++V Sbjct: 518 FYLSVDQMDQLLPYQGPEGSAPRIDRLGGKSWSQTKSRVRKQVEKIS-------ADLVML 570 Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAV----NSISEPEAINLIEVNLSSKSS 174 R + ++S + + RE + + EAI + ++ S + Sbjct: 571 YARRKAAEGFAFS-------PESILTREFDQSFPYDLTTDQEEAIQAVLSDMESPTP 620 >gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JDM301] gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JDM301] Length = 1194 Score = 37.4 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYTPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2] gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2] Length = 1148 Score = 37.4 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103] gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103] gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355] Length = 1156 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G++ E+ ++++ + L VPV I R A Sbjct: 486 PGQPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYA-NDAKLYVPVSSLHLIS-RYAGGA 543 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + A WSR Q+ K+ Sbjct: 544 DE-NAPLHKLGSDA------WSRARQKAAEKVR 569 >gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1177 Score = 37.4 bits (86), Expect = 0.87, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + + L VPV I R + Sbjct: 510 KIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYA-NDAKLYVPVASLHLIS-RYIGG 567 Query: 75 AHF 77 A Sbjct: 568 ADE 570 >gi|189500626|ref|YP_001960096.1| transcription-repair coupling factor [Chlorobium phaeobacteroides BS1] gi|189496067|gb|ACE04615.1| transcription-repair coupling factor [Chlorobium phaeobacteroides BS1] Length = 1107 Score = 37.4 bits (86), Expect = 0.87, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 Q G++IV+ +G+G ++ EV + E ++ + L V V Sbjct: 416 QKLNIGDYIVHEDYGIGIFKALETIEVGDSEQESVLVEYQGGD-QLYVNVQNIR 468 >gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB] gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB] Length = 1147 Score = 37.4 bits (86), Expect = 0.87, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G++ E+ ++++ + L VPV I Sbjct: 478 SPGQPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYA-NDAKLYVPVSSLHLI 529 >gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146] gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella ictaluri 93-146] Length = 1153 Score = 37.4 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++++ L VPV + R A Sbjct: 485 PGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA-GDAKLYVPVSSLHLLS-RYAGGA 542 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + G A WSR Q+ K+ Sbjct: 543 DD-SAPLHRLGGDA------WSRARQKAAEKVR 568 >gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC 33209] gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC 33209] Length = 1278 Score = 37.4 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK--LEFFVIAFDKDKM--- 55 M +++ R G+ +V+ HG+G E+ +++VAG E+ V+ + K Sbjct: 587 MPSKRRNAVDPLQLRGGDFVVHEQHGIGRFLELIQRKVAGTDGSREYLVLEYAPSKRGAP 646 Query: 56 --CLKVPVGKAIDI 67 L VP + I Sbjct: 647 GDRLFVPTDQLDQI 660 >gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70] Length = 1145 Score = 37.4 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+ E+ ++ + ++ L VPV I R + Sbjct: 479 KIGQPVVHLDHGVGRYAGLVTLENGGITAEYLLLNYA-NESKLYVPVSSLHLIS-RYVGG 536 Query: 75 AHF 77 A Sbjct: 537 ADE 539 >gi|260577891|ref|ZP_05845822.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] gi|258603985|gb|EEW17231.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] Length = 1136 Score = 37.4 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 19/130 (14%) Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R ++ A + +++RG W + + A+ +RDL ++ Sbjct: 157 RLITGAEHDMQIREILRGTEEDGNRYWP------TNVVPALSYAGFAQQLRDLLLRATER 210 Query: 130 EKSYS---------ERQLYESALNRMVREIAAVNSISEPE---AINLIEVNLSSKSSKTE 177 S +R ++E+A R +E V +S E A L+ L++ Sbjct: 211 GLSAQQLQQLGVEHDRPMWEAA-GRFQQEYQQVQRLSRSESLNASELLHATLAAFEKPEG 269 Query: 178 KSTSENQDKA 187 + E Q + Sbjct: 270 EQLVEQQREK 279 >gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM 4359] gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM 4359] Length = 895 Score = 37.4 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 13/83 (15%) Query: 17 GEHIVYPAHGVGTITE-IKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 GE +V+ HG+ I+ + V G ++ + ++ L VPV K + R + + Sbjct: 253 GELVVHKEHGIAIFEGMIRLKSVLGE-RDYLKLKYE--DAVLYVPVEKIDRVH-RYIGDP 308 Query: 76 HFVERALKLVRGKARVKRTMWSR 98 V+ R+ R W R Sbjct: 309 SQVKL--------DRLNRGRWKR 323 >gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1167 Score = 37.4 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + V + +++ L VPV + Sbjct: 497 SIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGD-KLYVPVENIDTL 548 >gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis ZM4] gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 1167 Score = 37.4 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + V + +++ L VPV + Sbjct: 497 SIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGD-KLYVPVENIDTL 548 >gi|163868353|ref|YP_001609562.1| transcription repair coupling factor [Bartonella tribocorum CIP 105476] gi|161018009|emb|CAK01567.1| transcription repair coupling factor [Bartonella tribocorum CIP 105476] Length = 1166 Score = 37.4 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G +K G+ + I + + L +PV Sbjct: 499 GDIVVHIDHGIGQFVGLKTITTTGILRDCLEIKYAGGDL-LFLPVENIE 546 >gi|154507723|ref|ZP_02043365.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC 17982] gi|153797357|gb|EDN79777.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC 17982] Length = 1194 Score = 37.4 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKM- 55 M ++++ G++IV+ HG+G E+ + + A ++ VI + K Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAASTRDYLVIEYAPSKRG 561 Query: 56 ----CLKVPVGKAIDI 67 L VP I Sbjct: 562 QPADRLFVPTDALDQI 577 >gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis H44/76] Length = 1379 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 711 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 762 >gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI 454] gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI 454] Length = 1165 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HGVG + ++ EF +A+ + L VPV + Sbjct: 492 KVGDPVVHSQHGVGRYMGLVTMDLGEGDTEFLHLAY-QGDSKLYVPVSQ 539 >gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197] gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617] gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197] gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617] Length = 1148 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGV 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY-- 133 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKEGFAFK 584 Query: 134 SERQLYE 140 ER+ Y+ Sbjct: 585 HEREQYQ 591 >gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4] gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4] Length = 1160 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGV ++ + G+ E+ + + L VPV I Sbjct: 486 KVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVASLNLI 537 >gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1167 Score = 37.4 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + V + +++ L VPV + Sbjct: 497 SIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGD-KLYVPVENIDTL 548 >gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834] gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834] Length = 1271 Score = 37.4 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 603 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 654 >gi|68536699|ref|YP_251404.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264298|emb|CAI37786.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 1104 Score = 37.4 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 19/130 (14%) Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129 R ++ A + +++RG W + + A+ +RDL ++ Sbjct: 125 RLITGAEHDMQIREILRGTEEDGNRYWP------TNVVPALSYAGFAQQLRDLLLRATER 178 Query: 130 EKSYS---------ERQLYESALNRMVREIAAVNSISEPE---AINLIEVNLSSKSSKTE 177 S +R ++E+A R +E V +S E A L+ L++ Sbjct: 179 GLSAQQLQQLGVEHDRPMWEAA-GRFQQEYQQVQRLSRSESLNASELLHATLAAFEKPEG 237 Query: 178 KSTSENQDKA 187 + E Q + Sbjct: 238 EQLVEQQREK 247 >gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1073 Score = 37.4 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 26/122 (21%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ ++G+G + + E +G+ E+ ++ + L +P+ K Sbjct: 423 KLGDYVVHESYGIGIFRGVSQVENSGITREYILLEYAGTD-RLYLPLEK----------- 470 Query: 75 AHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128 ++ K + R W R ++ + +AE + L+ Sbjct: 471 ---LDLLFKYTSSGDKEPRLNKLGGSAWERTRKKVAQ-----SIQDLAEDLLQLYAHRES 522 Query: 129 PE 130 E Sbjct: 523 RE 524 >gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56] gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase [Chlamydophila felis Fe/C-56] Length = 1084 Score = 37.4 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 GE +V+ +G+G ++++ ++ ++ V+ + DK L VP +A I R + Sbjct: 435 PGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYA-DKARLYVPSDQAYLIS-RYVGT 492 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAK 106 + L + G + W R+++ K Sbjct: 493 SEKTPD-LHNLNG------SKWK-RSRDLSEK 516 >gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58] gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58] Length = 1379 Score = 37.4 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 711 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 762 >gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis 053442] gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis 053442] Length = 1371 Score = 37.4 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 703 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 754 >gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM 17565] gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM 17565] Length = 1123 Score = 37.4 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F D + Sbjct: 435 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNDDVVF---------------V 479 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 480 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 531 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 532 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 570 >gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] Length = 1168 Score = 37.4 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 21/39 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 G+++V+ HG+G I++ EV + ++ I + K Sbjct: 501 NIGDYVVHENHGLGVYRGIEKIEVDHIVKDYIKIEYAKG 539 >gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1161 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G K EV +K ++ VI + + L +P+ I Sbjct: 495 NIGDYVVHEVHGIGKYIGTKRLEVQNVKKDYIVIEYKGED-KLFLPIESLNLI 546 >gi|294668965|ref|ZP_06734052.1| transcription-repair coupling factor [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309138|gb|EFE50381.1| transcription-repair coupling factor [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 1072 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 404 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 455 >gi|302419335|ref|XP_003007498.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261353149|gb|EEY15577.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 2491 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 19/137 (13%) Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 G+R + E + +E L +R + R +E++ SG +EV R Sbjct: 1974 ENGERQGLRAVGECNRLESLLAELRTENHKLEQKAMRHQREFEEARESG----ASEVQR- 2028 Query: 122 LHRTDSQPEKSYSE------RQLYESALNRMVREIAAVN---SISEPEAINLIEVNLSSK 172 R Q E + R+ E ++++ E+ N ++ +A L+E ++K Sbjct: 2029 -TRRSMQSEIDEANNQVNYVRRDLEEQISKLQAELDQANVDVESAKAQAEMLVEEVQTNK 2087 Query: 173 SSK----TEKSTSENQD 185 +++ EK +E +D Sbjct: 2088 TTEIEQLKEKHQNEVED 2104 >gi|119898994|ref|YP_934207.1| flagellin [Azoarcus sp. BH72] gi|119671407|emb|CAL95320.1| flagellin [Azoarcus sp. BH72] Length = 493 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 109 SGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 SGD++ +R+L S S S+RQ +N + E+ + S +E L++ + Sbjct: 85 SGDILQR---IRELAVQSSNATNSASDRQALNDEVNALTSELNRIASTTEFNGKKLLDGS 141 Query: 169 LSSK 172 ++ Sbjct: 142 FTTA 145 >gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385] Length = 1305 Score = 37.4 bits (86), Expect = 1.00, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 637 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 688 >gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis M13399] Length = 1305 Score = 37.4 bits (86), Expect = 1.00, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 637 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 688 >gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis H44/76] Length = 1235 Score = 37.4 bits (86), Expect = 1.00, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 567 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 618 >gi|315656340|ref|ZP_07909231.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493342|gb|EFU82942.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1123 Score = 37.4 bits (86), Expect = 1.00, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 108 NSGDLIA----IAEVVRDLHRTDSQPE----KSYSERQLYESALNRMVREIAAVNSISEP 159 +GD+ + AEV+ DL S RQ ++A R+IA+V I + Sbjct: 200 KTGDVFSDDATPAEVLVDLMGRQKIRGADGMLSGKLRQS-DNANEL--RKIASVQGIDDE 256 Query: 160 EAINLIEVNLSSKSSKTEKSTSENQDK 186 +I+ S+S K + S D Sbjct: 257 TLNRIIDRVFFSRSPKGKASERVGMDA 283 >gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] Length = 1153 Score = 37.4 bits (86), Expect = 1.00, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ + + +++ L VPV I Sbjct: 481 QPGQPVVHIDHGIGRYIGLQTLEAGGMVTEYVTLEY-QNEAKLYVPVASLNLI 532 >gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002] gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002] Length = 1159 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|225849434|ref|YP_002729599.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643749|gb|ACN98799.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Sulfurihydrogenibium azorense Az-Fu1] Length = 938 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 + G++I++ +G+G I+ +E+ G +F ++ + + + + V Sbjct: 289 KEGDYIIHEDYGIGVFKGIETREIRGKVYDFMILEYAEGE-KVYV 332 >gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont] Length = 1147 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++++ D L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGLTTLEAGGIVAEYLMLSYA-DDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + A WSR Q+ K+ Sbjct: 537 DE-NAPLHKLGSDA------WSRARQKAAEKVR 562 >gi|307701502|ref|ZP_07638520.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16] gi|307613294|gb|EFN92545.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16] Length = 1172 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFDKDKMC 56 + ++++ GE++V+ HG+G +++++ + G K E+ V+ + + Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGNKATSREYVVLEYAPSQRQ 540 Query: 57 -----LKVPVGKAI 65 L VP Sbjct: 541 GSKDLLWVPTDSLD 554 >gi|269976100|ref|ZP_06183099.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1] gi|269935693|gb|EEZ92228.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1] Length = 1172 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFDKDKMC 56 + ++++ GE++V+ HG+G +++++ + G K E+ V+ + + Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGNKATSREYVVLEYAPSQRQ 540 Query: 57 -----LKVPVGKAI 65 L VP Sbjct: 541 GSKDLLWVPTDSLD 554 >gi|227876324|ref|ZP_03994437.1| possible transcription-repair coupling factor [Mobiluncus mulieris ATCC 35243] gi|306817215|ref|ZP_07450962.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC 35239] gi|227843097|gb|EEJ53293.1| possible transcription-repair coupling factor [Mobiluncus mulieris ATCC 35243] gi|304650017|gb|EFM47295.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC 35239] Length = 1172 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFDKDKMC 56 + ++++ GE++V+ HG+G +++++ + G K E+ V+ + + Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGNKATSREYVVLEYAPSQRQ 540 Query: 57 -----LKVPVGKAI 65 L VP Sbjct: 541 GSKDLLWVPTDSLD 554 >gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola DG893] gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola DG893] Length = 1038 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG ++ V G EF ++ + L VPV I Sbjct: 372 RIGAPVVHIDHGVGRYQGLETITVEGEASEFLMLEYA-GGSKLYVPVSSLHLI 423 >gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] Length = 1150 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG ++ VAG EF + + L VPV I Sbjct: 481 GTPVVHLEHGVGRYEGLQTLSVAGETNEFITL-IYAEGAKLYVPVASLHLI 530 >gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617] Length = 1148 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 22/129 (17%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HGVG + E G+K E+ ++++ L VPV I R A Sbjct: 480 GQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLSYA-GDAKLYVPVSSLHLIS-RYAGGAE 537 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS-- 134 L + A WSR Q+ K+ +V +L +Q Sbjct: 538 E-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQRAAKTGFA 582 Query: 135 ---ERQLYE 140 ++Q Y+ Sbjct: 583 FKHDKQQYQ 591 >gi|291546543|emb|CBL19651.1| Predicted oxidoreductases of the aldo/keto reductase family [Ruminococcus sp. SR1/5] Length = 297 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%) Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS--GDL 112 + + PV GM + VE+ LK + W+ R + + + Sbjct: 120 VIIMEPVKG----GMLA-TPPEAVEKLLK--EAEPEASTASWAIRFAANLEGVITVLSGM 172 Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRM 146 +A++ +L + SE++ + A M Sbjct: 173 SNVAQMEDNLSFMKDFNGLTDSEKETLDKAREAM 206 >gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase) [Edwardsiella tarda EIB202] gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase) [Edwardsiella tarda EIB202] gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60] Length = 1178 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG + E G+K E+ ++++ L VPV Sbjct: 510 PGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA-GDAKLYVPVSS 556 >gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3] gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3] Length = 1157 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ ++ + L VPV I R Sbjct: 486 KVGQPIVHLDHGVARYMGLETLDTGGLIAEYLMLEYSGGD-KLYVPVSSLHLIS-RYSVG 543 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 E L + + W++ ++ KI Sbjct: 544 PDE-EANLNKLGNE------TWAKAKRKAVEKIR 570 >gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001] gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001] Length = 1160 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M] gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M] Length = 1160 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] Length = 715 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56 +++++ ++ G+ +V+P G G I + +E G++L+ I F K K+ Sbjct: 657 KEKESKTGEYKVGDTVVHPRWGKGQIVGV--RENRGLELK---INFGKGKVK 703 >gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] Length = 1180 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 22/56 (39%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 + + G+H+V+ HG+G +++ + ++ I + + + Sbjct: 487 RQATSKQVNPNKLQPGDHVVHRQHGIGKFVKLESLTLNNETRDYLTIQYADGLLRV 542 >gi|307638232|gb|ADN80682.1| Transcription-repair coupling factor [Helicobacter pylori 908] Length = 906 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 32/176 (18%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I R + ++ V + GK + RA+ + +G +I +A Sbjct: 411 HLIA-RYVVQSDSVP-VKDRL-GKGSFLKLKTKVRAKLLEI---AGKIIELA-------- 456 Query: 125 TDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 +ER L ++ + E+ S + +AI I +LSS Sbjct: 457 ---------AERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSH 503 >gi|149918007|ref|ZP_01906501.1| protein containing a von Willebrand factor type A domain [Plesiocystis pacifica SIR-1] gi|149821273|gb|EDM80677.1| protein containing a von Willebrand factor type A domain [Plesiocystis pacifica SIR-1] Length = 1606 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Query: 92 KRTMWSRRAQEYDAKINSG----------------DLIAIAEVVRDLHRTDSQPEKS-YS 134 + W R+ + + + +G D+ A A +VR L R PE + Sbjct: 1196 ELANW-RQQRVFLDMLQAGVQTEAEIELLVSHFWTDVAAKAFLVRGLQRRLVDPELTRAL 1254 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 ER L+ A++ E+A + + +A+ L+E L Sbjct: 1255 ERALFGDAIDLDRLELAVAAAPTNKQALELVEAALE 1290 >gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12] gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12] Length = 1157 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ + + L VPV I R Sbjct: 486 KVGQPIVHLDHGVAKYQGLETLDTGGLIAEYLKLEYAGGD-KLYVPVSALHLIS-RYSVG 543 Query: 75 AHF 77 Sbjct: 544 PDE 546 >gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003] gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003] Length = 1161 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|190150660|ref|YP_001969185.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915791|gb|ACE62043.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 712 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 13/116 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A L + +A W++ Q+ KI D+ AE++ + +SQ Sbjct: 542 ADETAP-LHKLGSEA------WAKTRQKAAEKIR--DV--AAELLDVYAKRESQKG 586 >gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568] Length = 1305 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 637 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 688 >gi|331657177|ref|ZP_08358139.1| transcription-repair coupling factor [Escherichia coli TA206] gi|331055425|gb|EGI27434.1| transcription-repair coupling factor [Escherichia coli TA206] Length = 736 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I R A Sbjct: 67 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 124 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A WSR Q+ K+ +A + D++ + E Sbjct: 125 EE-NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKE 167 >gi|207091918|ref|ZP_03239705.1| transcription-repair coupling factor (trcF) [Helicobacter pylori HPKX_438_AG0C1] Length = 911 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 264 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 322 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 323 HLIA-RYVAQSDSVPA-----------------------KDRLGKGSFLKLKAKVRTKLL 358 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSSK Sbjct: 359 EIAGKIIEL-AAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSK 415 >gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160] gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160] Length = 1159 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|293189395|ref|ZP_06608118.1| transcription-repair coupling factor [Actinomyces odontolyticus F0309] gi|292821858|gb|EFF80794.1| transcription-repair coupling factor [Actinomyces odontolyticus F0309] Length = 767 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKM- 55 M ++++ G++IV+ HG+G E+ + + A ++ VI + K Sbjct: 75 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAASTRDYLVIEYAPSKRG 134 Query: 56 ----CLKVPVGKAIDI 67 L VP I Sbjct: 135 QPADRLFVPTDALDQI 150 >gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC 51196] gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC 51196] Length = 1189 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+ +KE G LEF ++ F ++ L VP+ + I Sbjct: 517 VGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEFAEEA-KLYVPLTRLDLI 567 >gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC BAA-894] gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894] Length = 1148 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 478 RPGQPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640] gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06] Length = 1164 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 494 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 545 >gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1164 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 494 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 545 >gi|301059200|ref|ZP_07200138.1| transcription-repair coupling factor [delta proteobacterium NaphS2] gi|300446690|gb|EFK10517.1| transcription-repair coupling factor [delta proteobacterium NaphS2] Length = 1180 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 + G+ +V+ HG+G + E+A +F +I + K L +P + Sbjct: 516 KAGDLVVHEEHGIGRYKGLSTMEIAQRIQDFVIIEYAA-KSKLYLPADRVS 565 >gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703] gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703] Length = 1164 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 496 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 547 >gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6] gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6] Length = 1155 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + ++ EF + + D+ L VPV + I Sbjct: 479 KVGDPVVHANHGIGRYQGLVSIDLGEGPTEFLFLEYA-DQATLYVPVSQLQLI 530 >gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN] gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN] Length = 1160 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822] gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822] Length = 1169 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+++V+ HG+G +++ E E+ +I + L++P + Sbjct: 505 RPGDYVVHRHHGIGKFIKLEILE----SREYVLIQYADG--TLRIPSDSLDSL 551 >gi|254493915|ref|ZP_05107086.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Neisseria gonorrhoeae 1291] gi|226512955|gb|EEH62300.1| LOW QUALITY PROTEIN: transcription-repair coupling factor [Neisseria gonorrhoeae 1291] Length = 739 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G T + ++ G E ++ + + L VPV + I Sbjct: 69 NIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 120 >gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB 400] gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB 400] Length = 1178 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 ++ Q++R+ +Q + G+ IV+ HGV ++ + G+ E+ + Sbjct: 477 ISQQRRREKQKQVSTDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLE 536 Query: 50 FDKDKMCLKVPVGKAIDI 67 + L VPV I Sbjct: 537 YSGGD-KLYVPVSSLHLI 553 >gi|332346187|gb|AEE59521.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 485 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 102 EYDAKINSGDLIAIAEVVRDLHR---TDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158 AK+ SG L A V++ L R + + E + ++ ++ V +SE Sbjct: 346 ANLAKLRSGSLTVTAGVIKALQRDPDNAALTGRLAGELAMADTVETALLMRRMIVTGMSE 405 Query: 159 PEAINLIEVNLSSKSSKTEKSTSE 182 P A+ L + L+ + E E Sbjct: 406 PNAM-LQDDALAEGERRIEALDRE 428 >gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] Length = 1164 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 494 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 545 >gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC 29453] gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC 29453] Length = 1131 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + + +G E ++ + ++ L VPV + I Sbjct: 467 NIGDPVVHQEHGIGRYMGLTVMDFSGASTEMMLLEYA-NESQLYVPVSQLHLI 518 >gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] Length = 1183 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 G+++V+ HG+G I++ EV ++ I + Sbjct: 504 NIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAGGG 543 >gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1] gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1] Length = 1210 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 11/78 (14%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK------LEFFVIAFDKDK 54 M +++ G+ +V+ HG+G E+ +++VAG E+ V+ + K Sbjct: 513 MPSKRRNAVDPLQLHAGDFVVHEQHGIGRFVELIQRKVAGTSSSDAGLREYLVLEYAPSK 572 Query: 55 M-----CLKVPVGKAIDI 67 L VP + + Sbjct: 573 RGAPGDRLFVPTDQLDQV 590 >gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] Length = 1182 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + KR G+++V+ HG+G I++ V + ++ I + Sbjct: 500 YSGKRIQSFNELSIGDYVVHENHGLGVYKGIEKITVDKVAKDYIKIEYAGG 550 >gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184] gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184] Length = 1164 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 490 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEY-SGDSKLYVPVAQ 537 >gi|297518235|ref|ZP_06936621.1| transcription-repair coupling factor [Escherichia coli OP50] Length = 542 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A] gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A] Length = 1151 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 17/108 (15%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + Q +G+H+V+ +HG+G ++ E+ V+ L+VP Sbjct: 478 SNAKKVNLQKLNSGDHVVHKSHGIGKFLRLENLS----NREYLVVQ--YSDGVLRVPADS 531 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMW---SRRAQEYDAKIN 108 ++ +R + ++ W ++ ++ K+ Sbjct: 532 LDNL-LRYSCTDSTPPKL-------HKMTGKDWGKLKQKIRKNIKKLA 571 >gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] Length = 1182 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + KR G+++V+ HG+G I++ V + ++ I + Sbjct: 500 YSGKRIQSFNELSIGDYVVHENHGLGVYKGIEKITVDKVAKDYIKIEYAGG 550 >gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC 29176] gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC 29176] Length = 1117 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 445 KPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGG 484 >gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39] gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39] Length = 1114 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 21/44 (47%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G+ + + HG+G +++ EV G E + + + + Sbjct: 435 RDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDL 478 >gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19] gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19] Length = 1161 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G+ +V+ HG+G +K V + + + + L +PV Sbjct: 486 AEASSLSPGDLVVHIEHGIGRYEGLKTLSVNDAPHDCLELHYAAES-KLYLPVENID 541 >gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] Length = 1247 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++ V+ +G+G + + G + ++ + + K L +PV + + Sbjct: 520 NVGDYAVHVNYGIGKYLGLTRKMSNGKEKDYITLEYAKGD-KLYIPVEQMNFV 571 >gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315] gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315] Length = 1164 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 490 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEY-SGDSKLYVPVAQ 537 >gi|75762569|ref|ZP_00742423.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489951|gb|EAO53313.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 28 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 4/27 (14%), Positives = 14/27 (51%) Query: 138 LYESALNRMVREIAAVNSISEPEAINL 164 + ++A ++ E+ + I+E + + Sbjct: 1 MLDNAHEFLISELGLIKGITENQIKSF 27 >gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC BAA-2158] Length = 1148 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 22/130 (16%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++A+ L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLAYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS- 134 L + A WSR Q+ K+ +V +L +Q Sbjct: 537 EE-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQRAAKTGF 581 Query: 135 ----ERQLYE 140 ++Q Y+ Sbjct: 582 AFKHDKQQYQ 591 >gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430] gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC 49946] gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC 49946] gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430] Length = 1148 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 22/130 (16%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++A+ L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLAYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS- 134 L + A WSR Q+ K+ +V +L +Q Sbjct: 537 EE-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQRAAKTGF 581 Query: 135 ----ERQLYE 140 ++Q Y+ Sbjct: 582 AFKHDKQQYQ 591 >gi|294636793|ref|ZP_06715130.1| transcription-repair coupling factor [Edwardsiella tarda ATCC 23685] gi|291089984|gb|EFE22545.1| transcription-repair coupling factor [Edwardsiella tarda ATCC 23685] Length = 847 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 G+ +V+ HGVG + E G+K E+ ++++ L VPV Sbjct: 179 PGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA-GDAKLYVPVSS 225 >gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] Length = 1158 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 490 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 541 >gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114] gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114] Length = 1134 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 466 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 517 >gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3] gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3] Length = 1156 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEY-SGDSKLYVPVAQ 529 >gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU 1054] gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia HI2424] gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU 1054] gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia HI2424] Length = 1156 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEY-SGDSKLYVPVAQ 529 >gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus A6] gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus A6] Length = 1220 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAG---MKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+H+V+ HG+G E+ +++VAG E+ V+ + K L VP + + Sbjct: 542 GDHVVHEQHGIGRFVELLQRKVAGGSDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQV 600 >gi|210135730|ref|YP_002302169.1| transcription-repair coupling factor [Helicobacter pylori P12] gi|210133698|gb|ACJ08689.1| transcription-repair coupling factor [Helicobacter pylori P12] Length = 999 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVPA-----------------------KDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIEL-AAERNLILGKKMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|167945057|ref|ZP_02532131.1| hypothetical protein Epers_00520 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 222 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 13/102 (12%) Query: 89 ARVKRTMWS------RRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA 142 + MW+ R +E + +GD+ +A ++ L + + S E +L +A Sbjct: 29 DSPSKNMWAFHDDIRARIKEVRLVLEAGDMQQVA-LLFPLLQDEMTRLMSVEETRLLPNA 87 Query: 143 LNRM-VREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183 L + E A+ + E I L+ E Sbjct: 88 LQLLDKSEWQAMRAGDEE-----IGWMLNETPPPYPAPVEEE 124 >gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides ATCC 15264] gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides ATCC 15264] Length = 1150 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A TG+ +V+ HG+G +K ++ + + L +PV Sbjct: 476 AEASALTTGDLVVHLDHGIGRYEGLKTLDIQEAPHDCLEL-LYAGDSKLYLPVENID 531 >gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383] gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383] Length = 1156 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEY-SGDSKLYVPVAQ 529 >gi|325996826|gb|ADZ52231.1| Transcription-repair coupling factor [Helicobacter pylori 2018] gi|325998418|gb|ADZ50626.1| Transcription-repair coupling factor [Helicobacter pylori 2017] Length = 1001 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 32/176 (18%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I R + ++ V + GK + RA+ + +G +I +A Sbjct: 411 HLIA-RYVVQSDSVP-VKDRL-GKGSFLKLKTKVRAKLLEI---AGKIIELA-------- 456 Query: 125 TDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 +ER L ++ + E+ S + +AI I +LSS Sbjct: 457 ---------AERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSH 503 >gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1149 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKTEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|218513284|ref|ZP_03510124.1| transcription-repair coupling factor [Rhizobium etli 8C-3] Length = 338 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 ++V+ HG+G ++ EV G+ ++ I + D L +PV + I Sbjct: 1 YVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDD-KLFIPVTQLNLI 48 >gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter phenanthrenivorans Sphe3] gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter phenanthrenivorans Sphe3] Length = 1221 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAG---MKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+H+V+ HG+G E+ +++VAG E+ V+ + K L VP + + Sbjct: 543 GDHVVHEQHGIGKFVELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQV 601 >gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758] gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758] Length = 813 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + G+++V+ HG+G I++ EV + ++ I++ Sbjct: 141 KPGDYVVHENHGLGIYRGIEKIEVDKVTKDYMKISYADGG 180 >gi|254780073|ref|YP_003058180.1| Transcription-repair coupling factor [Helicobacter pylori B38] gi|254001986|emb|CAX30245.1| Transcription-repair coupling factor [Helicobacter pylori B38] Length = 995 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 32/177 (18%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 +K GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 351 YRKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVEN 409 Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123 I R ++++ V + GK + RA+ L+ IA Sbjct: 410 LHLIA-RYVAQSDSVP-VKDRL-GKGSFLKLKAKVRAK----------LLEIA------- 449 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSS Sbjct: 450 --SKIIEL-AAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSH 503 >gi|222085973|ref|YP_002544505.1| transcription-repair coupling factor [Agrobacterium radiobacter K84] gi|221723421|gb|ACM26577.1| transcription-repair coupling factor [Agrobacterium radiobacter K84] Length = 1166 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G ++ E AG + + D L +PV Sbjct: 499 GLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYA-DDAKLFLPVENID 550 >gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum SK46] gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum SK46] Length = 1215 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA-GMKL---EFFVIAFDKDKM-----CLKVPVGK 63 + G+++V+ HG+G ++ E+ + G E+ V+ + K L VP+ Sbjct: 518 ALKAGDYVVHDTHGIGRFVKLTERTIGTGEDQARREYVVLEYAPSKRGGPSDQLYVPMES 577 Query: 64 AI 65 Sbjct: 578 LD 579 >gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM 2366] gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM 2366] Length = 1113 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 21/44 (47%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G+ + + HG+G +++ EV G E + + + + Sbjct: 435 RDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDL 478 >gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 705 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56 R G+ +V+P HG G + ++ AG + V+ M Sbjct: 651 RPGDRVVHPQHGQGIVLAVETH--AGEER-VQVMFHPSIGMK 689 >gi|15646148|ref|NP_208332.1| transcription-repair coupling factor (trcF) [Helicobacter pylori 26695] gi|3914010|sp|O26066|MFD_HELPY RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|2314723|gb|AAD08581.1| transcription-repair coupling factor (trcF) [Helicobacter pylori 26695] Length = 999 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVPA-----------------------KDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSS Sbjct: 447 EIASKIIEL-AAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSH 503 >gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102] gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102] Length = 1134 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 466 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 517 >gi|260772487|ref|ZP_05881403.1| transcription-repair coupling factor [Vibrio metschnikovii CIP 69.14] gi|260611626|gb|EEX36829.1| transcription-repair coupling factor [Vibrio metschnikovii CIP 69.14] Length = 978 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+ E+ + + +++ L VPV I Sbjct: 306 KPGQPVVHIDHGIGRYLGLQTLEAGGITTEYVTLEY-QNEAKLYVPVSSLNLI 357 >gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] Length = 1296 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 628 NIGDPVVHEEHGIGRYMGLVTIDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 679 >gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180 str. F0310] gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180 str. F0310] Length = 1194 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKM- 55 M ++++ G++IV+ HG+G E+ + + A ++ VI + K Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRSIGRGDAASTRDYLVIEYAPSKRG 561 Query: 56 ----CLKVPVGKAIDI 67 L VP I Sbjct: 562 QPADRLFVPTDSLDQI 577 >gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032] gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032] Length = 1167 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + E G+ E+ ++ + L VPV I Sbjct: 497 RPGQPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYA-GDAKLYVPVSSLHLI 548 >gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu] Length = 1158 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|194337173|ref|YP_002018967.1| transcription-repair coupling factor [Pelodictyon phaeoclathratiforme BU-1] gi|194309650|gb|ACF44350.1| transcription-repair coupling factor [Pelodictyon phaeoclathratiforme BU-1] Length = 1103 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 Q + G+++V+ +G+G ++ + E ++ + L V +I + Sbjct: 406 QKLKVGDYVVHEDYGIGIFRSLETITAGNSEQECVLVEYAGGD-KLFV---NIQNIRL 459 >gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] Length = 1185 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 511 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 558 >gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia amoebophila UWE25] gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus Protochlamydia amoebophila UWE25] Length = 1101 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 33/182 (18%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVP 60 + A GE IV+ +G+G I+++ G+ EFF I + D+ L VP Sbjct: 445 STYHTSPAETYDLTPGEVIVHLNNGIGRYLGIEKRANHLGILSEFFTIEYA-DQAKLYVP 503 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 +A I + L + + + + W + +E+ R Sbjct: 504 FNQAHLI-TKYLGSNEVIPKL-------HTIGSSKWKK-TKEHTE--------------R 540 Query: 121 DLHRTDSQPEKSYSERQL-------YESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172 + S KSY+ER++ +SA L E + + AI+ I+ ++ SK Sbjct: 541 AILGYASDLLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISSIKQDMMSK 600 Query: 173 SS 174 + Sbjct: 601 KA 602 >gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] Length = 1184 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 + G +V+ HGVG ++ V EF + + D L VPV Sbjct: 516 KIGAPVVHIDHGVGRYRGLETITVDNQTNEFLTLEYA-DDAKLYVPV 561 >gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis alpha153] Length = 1286 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 618 NIGDPVVHEEHGIGRYMGLVTIDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 669 >gi|115378113|ref|ZP_01465290.1| type IV pilus assembly protein PilZ [Stigmatella aurantiaca DW4/3-1] gi|310819408|ref|YP_003951766.1| type IV pilus assembly PilZ [Stigmatella aurantiaca DW4/3-1] gi|115364900|gb|EAU63958.1| type IV pilus assembly protein PilZ [Stigmatella aurantiaca DW4/3-1] gi|309392480|gb|ADO69939.1| Type IV pilus assembly PilZ [Stigmatella aurantiaca DW4/3-1] Length = 162 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSIS 157 R LH+ Q + S E+QLY A + R + A ++ Sbjct: 10 FRALHKRARQKQLSDEEKQLYLMAREQFARALTAAQGMT 48 >gi|260424863|ref|ZP_05733529.2| conserved hypothetical protein [Dialister invisus DSM 15470] gi|260403431|gb|EEW96978.1| conserved hypothetical protein [Dialister invisus DSM 15470] Length = 373 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVR-------EIAAVNSISEPEAINLIE 166 AE +R KS E+ +Y+ A R++ E++ + + + A +LI+ Sbjct: 22 DTAETIRTASLEKQGAAKSGEEKHMYQLAEERLLHESSRFRAELSWLCGMGKERAYSLID 81 >gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans CGD1] gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC 17616] gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans CGD1] Length = 1156 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158] gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158] Length = 1164 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 490 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 537 >gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD] gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD] Length = 1185 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 511 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 558 >gi|63054653|ref|NP_594764.2| TPR repeat protein, TTC27 family [Schizosaccharomyces pombe 972h-] gi|26401564|sp|O36033|YLM1_SCHPO RecName: Full=TPR repeat-containing protein C19B12.01 gi|159884031|emb|CAB11723.2| TPR repeat protein, TTC27 family [Schizosaccharomyces pombe] Length = 817 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138 E+A ++ + W R E I S D+ +EV+R L R K ER + Sbjct: 608 EQAWHAMQQGIKYMYDNW--RIWENYMLI-SVDVNKWSEVIRALRRIIEIKGKDEGERAV 664 Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNL 169 L+ +V + ++ L Sbjct: 665 DVQCLDLVVNYVMQSCDNDASGLARMLNELL 695 >gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis 961-5945] gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136] Length = 1375 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 707 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 758 >gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180] gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180] Length = 1160 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG ++ EV G+ EF + + L VPV I Sbjct: 496 GAPVVHEEHGVGRYLGLQTLEVGGLTTEFLTLEYANGD-KLYVPVSALQLI 545 >gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis ES14902] Length = 1375 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 707 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 758 >gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] Length = 1375 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 707 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 758 >gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5] gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5] Length = 1156 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37] gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II helicase [Psychromonas ingrahamii 37] Length = 1163 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + + +V+ +GVG ++ E AG EF + + + L VPV I Sbjct: 489 KIDQPVVHIDYGVGKYLGLETIETAGHLTEFVKLEYLRGD-KLYVPVSSLQLI 540 >gi|332300263|ref|YP_004442184.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707] gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707] Length = 789 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 13 GFRTGEHIVYPAHGVGTITEIKE 35 G+ G+ + +P HG G I I+ Sbjct: 739 GYHVGDRVRHPRHGDGKIERIES 761 >gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205] Length = 1183 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 R R G+ +V+ HG+G ++++ + ++ V+ + + + Sbjct: 478 RKAASRTVDPNKMRPGDFVVHRNHGIGKFLKLEKLAIGSEARDYLVVQYADGLLRV 533 >gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis 8013] Length = 1379 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 711 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 762 >gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC 43325] gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC 43325] Length = 1145 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+ E+ ++ + ++ L VPV I R + Sbjct: 479 KIGQPVVHLEHGVGRYAGLVTLENGGITAEYLLLNYA-NESKLYVPVSSLHLIS-RYVGG 536 Query: 75 AHF 77 + Sbjct: 537 SDE 539 >gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis alpha275] Length = 1375 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 707 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 758 >gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis OX99.30304] Length = 1292 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 624 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 675 >gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] Length = 1301 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 633 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 684 >gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] Length = 1179 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 8 DAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 Q F G+++V+ HG+G I++ EV + ++ + + + Sbjct: 494 GKQIQSFTDLNIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGV 544 >gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] Length = 1130 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ AHG+G + ++ + E + + D L VPV + I Sbjct: 467 KAGDPVVHEAHGIGRYVGLVTMDLGEGETELMQLEYA-DGATLYVPVSQLQLI 518 >gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4] gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4] Length = 1151 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii MLHE-1] gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii MLHE-1] Length = 1166 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG ++ E G+ EF + + K L VPV I Sbjct: 493 IGAPVVHEDHGVGRYLGLQTLEAGGLTTEFLTLEYAKGD-KLYVPVASLHLI 543 >gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria IOP40-10] gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria IOP40-10] Length = 1156 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6] gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6] Length = 1156 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 529 >gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] Length = 785 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 13 GFRTGEHIVYPAHGVGTITEIKE 35 G+ G+ + +P HG G I I+ Sbjct: 735 GYHVGDRVRHPRHGDGKIERIES 757 >gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM 45100] Length = 1255 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM-----CLKVPVGK 63 G+ +V+ +HG+G ++E+ + + E+ V+ + K L VP+ + Sbjct: 556 ALEPGDLVVHDSHGIGKFVRMEERTIGKGADASRREYLVLEYAPSKRGGPGDQLYVPMDQ 615 Query: 64 AI 65 Sbjct: 616 LD 617 >gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190] Length = 1232 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 564 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 615 >gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM 15894] gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM 15894] Length = 1218 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM-----CLKVPVGKAI 65 R G+++V+ HGVG E+ ++ + E+ V+ + K L VP+ + Sbjct: 532 RAGDYVVHEQHGVGRFVEMVQRTLGAGSNAATREYLVLEYASSKRGQPGDRLFVPMDQLD 591 Query: 66 DI 67 + Sbjct: 592 QV 593 >gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b] gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b] Length = 1147 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G++ E+ ++++ L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGLTRLEAGGIEAEYLMLSYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 L + A WSR Q+ K+ Sbjct: 537 DE-NAPLHKLGSDA------WSRARQKAAEKVR 562 >gi|255994799|ref|ZP_05427934.1| transcription-repair coupling factor [Eubacterium saphenum ATCC 49989] gi|255993512|gb|EEU03601.1| transcription-repair coupling factor [Eubacterium saphenum ATCC 49989] Length = 1092 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 +R + Q G+++V+ G+G T IK +++G ++ + + +D L VPV A Sbjct: 410 ERLSGYQNIEEGDYLVHKTKGIGRYTGIKTMKLSGRSKDYICLVYAQDD-KLYVPVENAN 468 >gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579] Length = 1296 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + + G E ++ + + L VPV + I Sbjct: 628 NIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 679 >gi|312883015|ref|ZP_07742746.1| coniferyl aldehyde dehydrogenase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369175|gb|EFP96696.1| coniferyl aldehyde dehydrogenase [Vibrio caribbenthicus ATCC BAA-2122] Length = 478 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 25 HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG-MRKLSEAHFVERALK 83 G I +I++ E G ++ +++ D M + K G + + + Sbjct: 319 QGA-KIHKIEKVESEGRQMPPYLLTQVTDDMRVM----KEEIFGPILPVISYRTFDEVFD 373 Query: 84 LVRGKARV 91 ++ + R Sbjct: 374 IINSRPRP 381 >gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1148 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ IV+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 PGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A W+R Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WARARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|326802953|ref|YP_004320771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aerococcus urinae ACS-120-V-Col10a] gi|326650728|gb|AEA00911.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aerococcus urinae ACS-120-V-Col10a] Length = 860 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 20/68 (29%) Query: 7 RDAMRQGFRTGEHIV--------YPAHGVGTITEIKEQE------------VAGMKLEFF 46 +D M++ G+ +V YP G+G + I+ + + G + E Sbjct: 52 KDTMKETLAPGDLVVLTVRPDPQYPGRGIGIVQAIENKTATIWVEEAYRGSLMGEEQETG 111 Query: 47 VIAFDKDK 54 ++ D+ Sbjct: 112 LVKRPLDE 119 >gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM 20093] gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM 20093] Length = 1205 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAG-----MKLEFFVIAFDKDKM-----CLKVPV 61 + G+ +V+ HG+G E+K++ G K E+ VI + K L +P Sbjct: 512 MELKPGDFVVHDQHGIGRFVELKQRS-GGSGRNEAKREYLVIEYAPSKRNAPPDKLFIPT 570 Query: 62 GKAIDI 67 + + Sbjct: 571 DQLDQV 576 >gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1148 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ IV+ HGVG + E G+K E+ ++ + + L VPV I R A Sbjct: 479 PGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A W+R Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WARARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1149 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] Length = 1178 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 9/83 (10%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+++V+ HG+G I++ E G+ ++ + + D L +P + G++K + A Sbjct: 509 VGDYVVHEDHGLGIYRGIEKIEQDGVIKDYLKVEY-GDGGNLYLPATRLD--GIQKYAGA 565 Query: 76 HFVERALKLVRGKARVKRTMWSR 98 + L + G W++ Sbjct: 566 EAKKPKLNRLGGD------QWNK 582 >gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1107 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G I++ EV + ++ I + + L +P + Sbjct: 442 SVGDFVVHEKHGLGIYRGIEKVEVDRIVKDYIKIEY-RGGSNLYIPATQLD 491 >gi|217031702|ref|ZP_03437206.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128] gi|298737160|ref|YP_003729690.1| transcription-repair coupling factor [Helicobacter pylori B8] gi|216946549|gb|EEC25149.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128] gi|298356354|emb|CBI67226.1| transcription-repair coupling factor (superfamily II helicase) [Helicobacter pylori B8] Length = 999 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVPA-----------------------KDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSS Sbjct: 447 EIAGKIIEL-AAERNLILGKKMDVHLAELEVFKSQAGFEYTSDQEKAIAEISKDLSSH 503 >gi|15612523|ref|NP_224176.1| transcription-repair coupling factor [Helicobacter pylori J99] gi|7531157|sp|Q9ZJ57|MFD_HELPJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|4156075|gb|AAD07030.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99] Length = 1001 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I R + ++ V + GK + RA+ + +G +I +A R+L Sbjct: 411 HLIA-RYVVQSDSVP-VKDRL-GKGSFLKLKAKVRAKLLEI---AGKIIELAA-ERNLIL 463 Query: 125 TDS 127 Sbjct: 464 GKK 466 >gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis M01-240149] gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis NZ-05/33] Length = 1227 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + + G E ++ + + L VPV + I Sbjct: 559 NIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 610 >gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis alpha710] Length = 1227 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + + G E ++ + + L VPV + I Sbjct: 559 NIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 610 >gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506] gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506] Length = 1226 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 +++V+ HG+G ++ + E+ VI L++ A +G Sbjct: 560 NDYVVHRQHGIGRFLRLESLTINQETREYLVIQ--YGDGTLRI---AADQLG 606 >gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201] gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201] Length = 1254 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 14/69 (20%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM---------KLEFFVIAFDKDKM-----CLK 58 + G+++V+ HG+G E+ ++ +AG E+ V+ + K L Sbjct: 556 ALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPRDRLF 615 Query: 59 VPVGKAIDI 67 VP + + Sbjct: 616 VPTDQLDQV 624 >gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus TB-2] gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus TB-2] Length = 981 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G +K+ EV G EF + + D L +PV + R ++ Sbjct: 352 KKGDFVVHIDHGIGKFLGLKKMEVLGKIGEFAEVLYANDD-KLLLPVENLDKLE-RYIAP 409 Query: 75 AHFVERALKLVRGKARVKRT 94 + + KL +G K T Sbjct: 410 DGVIPQLDKLGKGTFAKKLT 429 >gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297] gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297] Length = 1151 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HG+G ++ +V G EF + + + L VPV I Sbjct: 484 PGTPVVHLDHGIGRYRGLETLDVDGHTQEFLKLEYAEGS-NLYVPVSNLHLI 534 >gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum PRL2010] gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum PRL2010] Length = 1199 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM----- 55 +++ + G+++V+ HG+G E++++ + G E+ VI + K Sbjct: 508 RRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGAPAD 567 Query: 56 CLKVPVGKAIDI 67 L +P + I Sbjct: 568 KLFIPTDQLDLI 579 >gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB 41171] gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB 41171] gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB 41171] Length = 1199 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM----- 55 +++ + G+++V+ HG+G E++++ + G E+ VI + K Sbjct: 508 RRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGAPAD 567 Query: 56 CLKVPVGKAIDI 67 L +P + I Sbjct: 568 KLFIPTDQLDLI 579 >gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908] gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908] Length = 1157 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV ++ + G+ E+ + + L VPV I R Sbjct: 486 KVGQPIVHLDHGVAHYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVSSLHLIS-RYSVG 543 Query: 75 AHF 77 Sbjct: 544 PDE 546 >gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7] gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7] Length = 1160 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGV + + G+ E+ + + L VPV I Sbjct: 488 KVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGD-KLYVPVSNLHMI 539 >gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1149 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1149 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1149 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae L20] gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 1149 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1149 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ + ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYA-NEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum K10] Length = 1185 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ E + ++ I + L +P K I Sbjct: 507 SVGDYVVHENHGLGIYRGIEKIEQDKVVKDYIKIEYADGG-NLYLPATKLEGI 558 >gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis MSMB43] Length = 1189 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-SDSKLYVPVAQ 560 >gi|240850603|ref|YP_002972003.1| transcription repair coupling factor [Bartonella grahamii as4aup] gi|240267726|gb|ACS51314.1| transcription repair coupling factor [Bartonella grahamii as4aup] Length = 1166 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ IV+ HG+G +K + G+ + I + + L +PV Sbjct: 499 GDIIVHIDHGIGQFVGLKTIKTTGILRDCLEIRYAGGDL-LFLPVENIE 546 >gi|225850639|ref|YP_002730873.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Persephonella marina EX-H1] gi|225645015|gb|ACO03201.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) [Persephonella marina EX-H1] Length = 947 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 +K D Q + G++I++ G+G I+ +E+ G K +F ++ + ++ + V Sbjct: 284 SKKVDLEIQPIKEGDYIIHEDFGIGIFRGIETREIRGKKYDFMILEYANNE-KVYV 338 >gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium profundum SS9] gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium profundum SS9] Length = 1151 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+ E+ ++ +D L VPV I Sbjct: 482 QVGQPVVHIDHGIGRYQGLQTLEAGGITTEYVMLEYDAGA-KLYVPVASLHLI 533 >gi|317013364|gb|ADU83972.1| transcription-repair coupling factor (trcF) [Helicobacter pylori Lithuania75] Length = 999 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLH 123 I R ++++ V ++ G + + A+V L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------IKDRLGKGSFLKLKAKVKTKLL 446 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 + + +ER L ++ + E+ S + +AI I +LSS Sbjct: 447 EIAGKIIELAAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSH 503 >gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424] gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424] Length = 1168 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 4 QQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 +++R A +Q R G+++V+ HG+G +++ E E+ +I + L++ Sbjct: 490 KRRRAASKQVNLDKLRPGDYVVHRNHGIGKFIKLEILE----SREYILIQYADG--TLRI 543 Query: 60 PVGKAIDI 67 P + Sbjct: 544 PSDSLDSL 551 >gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT] gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT] Length = 1143 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K EF ++ + + L VPV I R + Sbjct: 478 KIGQPVVHLEHGVGRYGGLVSLENGGIKAEFLLLEYA-NNSKLYVPVTSLHLIS-RYVGG 535 Query: 75 AHFVERALKLVRGKARVKRTMW-SRRAQEYDAKIN 108 + ++ W R + KI Sbjct: 536 SDENAPL-------HKLGNDSWAKARHKAI-EKIR 562 >gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565] gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565] Length = 1157 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 G+ +V+ HGVG ++ + G+ EF + + L VPV Sbjct: 492 GQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPV 535 >gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1] gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1] Length = 1187 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G I++ E + ++ I + L +P K I Sbjct: 509 SVGDYVVHENHGLGIYRGIEKIEQDKVVKDYIKIEYADGG-NLYLPATKLEGI 560 >gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis Bt4] Length = 1189 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 560 >gi|317014985|gb|ADU82421.1| transcription-repair coupling factor [Helicobacter pylori Gambia94/24] Length = 1001 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 RKSKLALNELNPGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 I R ++++ V + GK + RA+ + +G +I +A R+L Sbjct: 411 HLIA-RYVAQSDSVP-VKDRL-GKGSFLKLKAKVRAKLLEI---AGKIIELAA-ERNLIL 463 Query: 125 TDS 127 Sbjct: 464 GKK 466 >gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis E264] gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis E264] Length = 1217 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 541 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 588 >gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145] gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145] Length = 1116 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G+ I + HGVG +++ EV G + E + + + + Sbjct: 434 RDLKPGDFITHIDHGVGKYGGLEKVEVNGKEQEMIRLIYADNDL 477 >gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium bifidum S17] gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium bifidum S17] Length = 1199 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM----- 55 +++ + G+++V+ HG+G E++++ + G E+ VI + K Sbjct: 508 RRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGAPAD 567 Query: 56 CLKVPVGKAIDI 67 L +P + I Sbjct: 568 KLFIPTDQLDLI 579 >gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 1158 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 TG+ +V+ HG+G + AG + + + L +PV Sbjct: 481 ALETGDLVVHAEHGIGRYDGLVTINSAGGDHDCLHLVYHGGD-KLYLPVENIE 532 >gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei 576] gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei 576] Length = 1189 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 560 >gi|149915016|ref|ZP_01903545.1| hypothetical protein RAZWK3B_16630 [Roseobacter sp. AzwK-3b] gi|149811204|gb|EDM71041.1| hypothetical protein RAZWK3B_16630 [Roseobacter sp. AzwK-3b] Length = 5115 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 26 GVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 G I + +E AG ++FV+ + + +KVPV + I R Sbjct: 1840 GARKIVDRGTRERAGEPQDYFVVQMEGIEETVKVPVSEIGRIIARD 1885 >gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229] gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247] gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei BCC215] gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse 4] gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20] gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399] gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH] gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU] gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e] gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei 2002721280] gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229] gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247] gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH] gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU] gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei 2002721280] gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e] gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399] gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse 4] gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20] Length = 1189 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 560 >gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis 157F] gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis 157F] Length = 1194 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA-G---MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+++V+ HG+G E++++ + G E+ VI + K L +P + Sbjct: 508 KKGDYVVHEQHGIGRFIEMRQRIIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLD 567 Query: 66 DI 67 + Sbjct: 568 QV 569 >gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM 12563] gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM 12563] Length = 1244 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++ V+ +G+G + + G + ++ + + K L +PV + + Sbjct: 523 NVGDYAVHVNYGIGKYLGLTRKLSNGKEKDYITLEYAKGD-KLYIPVEQMNFV 574 >gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis TXDOH] Length = 1175 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 499 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 546 >gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106a] gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei B7210] gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei 112] gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106b] gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei S13] gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106a] gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei S13] gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei 1106b] Length = 1189 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 560 >gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1] gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1] Length = 1164 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGV + + G+ E+ + + L VPV I Sbjct: 488 KVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGD-KLYVPVSNLHLI 539 >gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei K96243] gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710b] gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei 668] gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei 305] gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei DM98] gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14] gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9] gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei NCTC 13177] gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei Pakistan 9] gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei MSHR346] gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655] gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei Pasteur 52237] gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710a] gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei K96243] gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710b] gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei 668] gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei 305] gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei Pasteur 52237] gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655] gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei Pakistan 9] gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei MSHR346] gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei 1710a] Length = 1189 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 513 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 560 >gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344] gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1] gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344] gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1] Length = 1157 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 481 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 528 >gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae] Length = 1146 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HGVG + G++ E+ ++++ + L VPV I Sbjct: 477 RPGQPVVHLEHGVGRYQGLTTLAAGGIQAEYLMLSYAGND-KLYVPVSSLNLI 528 >gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99] gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd) [Erwinia tasmaniensis Et1/99] Length = 1148 Score = 36.3 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 22/130 (16%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G++ E+ ++A+ L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYIGLTTLETGGIQAEYLMLAYA-GDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS- 134 L + A WSR Q+ K+ +V +L +Q Sbjct: 537 EE-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQRAAKTGF 581 Query: 135 ----ERQLYE 140 ++Q Y+ Sbjct: 582 AFKHDKQQYQ 591 >gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis C6786] Length = 1157 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 481 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVSQ 528 >gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis EO147] Length = 1157 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 481 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVSQ 528 >gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91] Length = 1175 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 499 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 546 >gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336] gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336] Length = 1144 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + E G+K EF ++ + + L VPV I R + Sbjct: 479 KIGQPVVHLEHGVGRYGGLVSLENGGIKAEFLLLEYA-NNSKLYVPVTSLHLIS-RYVGG 536 Query: 75 AHFVERALKLVRGKARVKRTMW-SRRAQEYDAKIN 108 + ++ W R + KI Sbjct: 537 SDENAPL-------HKLGNDSWAKARHKAI-EKIR 563 >gi|317010243|gb|ADU80823.1| transcription-repair coupling factor [Helicobacter pylori India7] Length = 999 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------IKDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIAGKIIEL-AAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] Length = 1044 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 G+++V+ HG+G I++ EV + ++ I Sbjct: 373 VGDYVVHENHGLGIYRGIEKVEVDKVVKDYIKIE 406 >gi|308176608|ref|YP_003916014.1| transcription-repair-coupling factor [Arthrobacter arilaitensis Re117] gi|307744071|emb|CBT75043.1| transcription-repair-coupling factor [Arthrobacter arilaitensis Re117] Length = 1204 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM 55 +T ++KR+A+ + G+ IV+ HG+G E+ ++V G K E+ V+ + K Sbjct: 503 LTVKRKRNAVDPLSLQAGDFIVHEQHGIGKFVELMARKVNGSGKDAKREYLVVEYASSKR 562 Query: 56 -----CLKVPVGKAIDI 67 L VP+ + + Sbjct: 563 GAPGDRLFVPMDQLHMV 579 >gi|49474197|ref|YP_032239.1| transcription repair coupling factor [Bartonella quintana str. Toulouse] gi|49239701|emb|CAF26076.1| Transcription repair coupling factor [Bartonella quintana str. Toulouse] Length = 1166 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G +K G+ + I + L +P+ Sbjct: 499 GDIVVHIDHGIGQFVGLKTITATGILRDCLEIKYAGGD-RLFLPIENIE 546 >gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae T3T1] Length = 1149 Score = 36.3 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ +I + ++ L VPVG I R + Sbjct: 483 KIGQPVVHLDHGVGRYGGLVTLDTGGLKAEYLLINYA-NESKLYVPVGSLHLIS-RYVGG 540 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 + ++ WS+ Q+ KI Sbjct: 541 SDETAPL-------HKLGNESWSKTRQKAAEKIR 567 >gi|299538158|ref|ZP_07051443.1| hypothetical protein BFZC1_19165 [Lysinibacillus fusiformis ZC1] gi|298726360|gb|EFI66950.1| hypothetical protein BFZC1_19165 [Lysinibacillus fusiformis ZC1] Length = 707 Score = 36.3 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 82 LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE-KSYSE-RQLY 139 L ++ + + W+ +E KI L + E L+ + E KSY ++ Sbjct: 18 LDDLKDEPLKMYSNWNN-YKENLEKIKKQLLKMLNEKTEILYINKNLKEMKSYLNIKKTL 76 Query: 140 ESALNRMVREIAAVNSISEPEAIN 163 + R++RE A ++ I + + Sbjct: 77 KK--ERIIRE-AILDEIDDKQIKE 97 >gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1154 Score = 36.3 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 G+ +V+ HGVG ++ + G+ EF + + L VPV Sbjct: 488 GQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPV 531 >gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] Length = 1177 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 G+++V+ HG+G I++ EV ++ I Sbjct: 504 SVGDYVVHENHGLGIYRGIEKLEVDKKVKDYIKIE 538 >gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC 25196] gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC 25196] Length = 1156 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G + ++ + EF + + L VPV + IG Sbjct: 487 KAGDPVVHEQHGIGRYLGLVSMDLGEGETEFLSLEYASGD-KLYVPVSQLHLIG 539 >gi|312890454|ref|ZP_07749991.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM 18603] gi|311297224|gb|EFQ74356.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM 18603] Length = 1119 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G++I + HG+G +++ EV G E + + + + Sbjct: 435 RELKPGDYITHIDHGIGKYAGLEKVEVNGKMQEMIRLLYSDNDL 478 >gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase) [Candidatus Regiella insecticola LSR1] gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase) [Candidatus Regiella insecticola LSR1] Length = 1165 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ GVG + E G+K E+ ++++ + L +P+ I Sbjct: 499 RPGQPVVHLEQGVGRYQGMTTLEAGGIKAEYLILSYAEQD-KLYIPISSLHLI 550 >gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13] gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13] Length = 1152 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + KD L VPV + Sbjct: 483 KIGDPVVHANHGIGRYRGLVTVDLGEGETEFLHLQYAKDT-KLYVPVSQ 530 >gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus] Length = 1201 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 10/116 (8%) Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +K DA GF + G+ IV+ G+G + + EV G+ +F V+ + + +P Sbjct: 519 SKKLDAFGSGFGDLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRD-KIYLP 577 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 VG+ ++K S + L + + K +R +E K+ + +L+ IA Sbjct: 578 VGRMRL--IQKFSGGDPTQVQLDKLGTTSWEKT---KKRVKEQLLKMAA-ELLQIA 627 >gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] Length = 1141 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEV-AGMKL-EFFVIAFDKDKMCLKVPVGKAIDI 67 + G+++V+ HGV + +E+ G ++ V+ + L VP+ + + Sbjct: 479 KPGDYVVHSEHGVAQYLGL--REISGGENQGDYMVLEY-SGGAKLYVPLTRIDLV 530 >gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae NTUH-K2044] gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1148 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM 20603] gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM 20603] Length = 1216 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+ +V+ HGVG E+ ++ + E+ VI + + L VP+ + Sbjct: 534 KAGDFVVHEQHGVGKFVELVQRTLGAPGNQATREYLVIEYAASRRGQPGDRLFVPMDQLD 593 Query: 66 DI 67 + Sbjct: 594 QV 595 >gi|225022992|ref|ZP_03712184.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC 33806] gi|224944215|gb|EEG25424.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC 33806] Length = 1223 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 13/64 (20%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF-------DKDKMCLKVPV 61 ++G+++V+ HG+G + E+ + G + E+ V+ + D L VP+ Sbjct: 504 ALKSGDYVVHETHGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPAD--QLYVPM 561 Query: 62 GKAI 65 Sbjct: 562 DSLD 565 >gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3] gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3] Length = 1126 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 457 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 507 >gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21] gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21] Length = 1112 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G++I + HG+G +++ EV G E + + + + Sbjct: 434 RDLKPGDYITHIDHGIGKYAGLEKVEVNGKMQEMIRLVYADNDL 477 >gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1148 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9] gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9] Length = 1131 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ AHG+G + ++ + E + + D L VPV + I Sbjct: 468 KVGDPVVHEAHGIGRYLGLVSMDLGEGQTEMMQLEYA-DGATLYVPVSQLHLI 519 >gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase) [uncultured Chloroflexi bacterium HF0500_03M05] Length = 1192 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+G + E+ ++ + + L VP+ + Sbjct: 498 NPGDYVVHVEHGIGRFVGTGHIPRDEVDREYLILQYAESD-RLYVPMDHLDRV 549 >gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55] gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55] Length = 1148 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] Length = 1188 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 10/116 (8%) Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +K DA GF + G+ IV+ G+G + + EV G+ +F V+ + + +P Sbjct: 506 SKKLDAFGSGFGDLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRD-KIYLP 564 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 VG+ ++K S + L + + K +R +E K+ + +L+ IA Sbjct: 565 VGRMRL--IQKFSGGDPTQVQLDKLGTTSWEKT---KKRVKEQLLKMAA-ELLQIA 614 >gi|190891739|ref|YP_001978281.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CIAT 652] gi|190697018|gb|ACE91103.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CIAT 652] Length = 1167 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 500 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 551 >gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD CC 1b] gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD CC 1b] Length = 1161 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 472 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 516 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 517 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 568 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 569 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 607 >gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1152 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 483 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 533 >gi|303390322|ref|XP_003073392.1| hypothetical protein Eint_081000 [Encephalitozoon intestinalis ATCC 50506] gi|303302538|gb|ADM12032.1| hypothetical protein Eint_081000 [Encephalitozoon intestinalis ATCC 50506] Length = 682 Score = 36.3 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 39/171 (22%) Query: 31 TEIKEQEVAGM------KLEFFVIAFDKDKMCLKVPVGKAIDIGMR--KLSEAHFVERAL 82 I+E E+ G + + V+ K L V D +R +L + + L Sbjct: 74 KGIEEVEMDGEQDQENNEWKTHVLRNLLKKNRLNV------DARIRLSRLVGRNEGSKIL 127 Query: 83 KLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA-EVV-------RDLHRTDSQ------ 128 + G+ +W +E ++ + D++ A EVV DL R D Sbjct: 128 --LEGRDIKDERLW----REIISRYYASDMLDEALEVVDGDEGFYEDLFRKDRDIKILRA 181 Query: 129 ----PEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174 +S+ R++ E+ + + +++ S+ E L+++ + +K + Sbjct: 182 GVSRHPRSFGLRKMMSENLEDILEKQMFLYESVVETHEERLVDLFIGTKPN 232 >gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470] gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470] Length = 1135 Score = 36.3 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V HG+G +K E+ G+ ++ I + L +P+ + + Sbjct: 458 EPGDYVVQRVHGIGKYIGVKTIELEGVHRDYITIQYAGAD-KLYLPMEQIASL 509 >gi|305681933|ref|ZP_07404737.1| transcription-repair coupling factor [Corynebacterium matruchotii ATCC 14266] gi|305658406|gb|EFM47909.1| transcription-repair coupling factor [Corynebacterium matruchotii ATCC 14266] Length = 1238 Score = 36.3 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 13/64 (20%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF-------DKDKMCLKVPV 61 ++G+++V+ HG+G + E+ + G + E+ V+ + D L VP+ Sbjct: 519 ALKSGDYVVHETHGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPAD--QLYVPM 576 Query: 62 GKAI 65 Sbjct: 577 DSLD 580 >gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342] gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342] Length = 1148 Score = 36.3 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G+ E+ ++ + + L VPV I Sbjct: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLI 529 >gi|322693735|gb|EFY85585.1| myosin class II heavy chain [Metarhizium acridum CQMa 102] Length = 2258 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 15/131 (11%) Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 GMR ++E +E L +R + + SR +E++ SG +EV R R Sbjct: 1760 ERSGMRAVNECKRLEGLLGELRTENHKLQQAASRYQREFEEARESG----ASEVKR--TR 1813 Query: 125 TDSQPEKSYSERQL------YESALNRMVREIAAVN-SISEPEAIN--LIEVNLSSKSSK 175 Q E + Q+ E +++ E+ V +A N L+E S+K+++ Sbjct: 1814 MSLQTEIDAANNQVNVIREELEEQNSKLRTELDNVKLEADTAKAQNEMLLEEVQSTKAAE 1873 Query: 176 TEKSTSENQDK 186 E + + Q++ Sbjct: 1874 LEAAERKYQNE 1884 >gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661] gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661] Length = 1147 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 22/129 (17%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 G+ +V+ HGVG + E G+ E+ ++ + L VPV I R A Sbjct: 480 GQPVVHLEHGVGRYIGLTTLETGGITAEYLMLTYA-GDAKLYVPVSSLHLIS-RYAGGAD 537 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS-- 134 L + A WSR Q+ K+ +V +L +Q E Sbjct: 538 E-NAPLHKLGSDA------WSRARQKAAEKVR--------DVAAELLDIYAQREAKSGFA 582 Query: 135 ---ERQLYE 140 +R+ Y+ Sbjct: 583 FKHDREQYQ 591 >gi|327188302|gb|EGE55521.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CNPAF512] Length = 1167 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 500 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 551 >gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22] gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22] Length = 1141 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 452 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 496 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 497 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 548 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 549 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 587 >gi|209549326|ref|YP_002281243.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535082|gb|ACI55017.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1167 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 500 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 551 >gi|37728037|gb|AAO43498.1| transcription repair coupling factor [Rhizobium etli] Length = 1114 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 500 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 551 >gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum ATCC 33861] gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum ATCC 33861] Length = 1112 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G++I + HGVG +++ +V G E + + + + Sbjct: 434 RDLKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLVYADNDL 477 >gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum ATCC 33300] gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum ATCC 33300] Length = 1112 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + + G++I + HGVG +++ +V G E + + + + Sbjct: 434 RDLKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLVYADNDL 477 >gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] Length = 1167 Score = 35.9 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 500 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 551 >gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08] Length = 1155 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G +V+ HGVG +++ V + EF + + L VPV I Sbjct: 488 QPGAAVVHEDHGVGRYLGLQKLTVGDSEAEFLTLEYAGGD-KLYVPVASLHLI 539 >gi|108563915|ref|YP_628231.1| transcription-repair coupling factor [Helicobacter pylori HPAG1] gi|107837688|gb|ABF85557.1| transcription-repair coupling factor [Helicobacter pylori HPAG1] Length = 999 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVE 79 I R ++++ V Sbjct: 411 HLIA-RYVAQSDSVP 424 >gi|298369031|ref|ZP_06980349.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] gi|298283034|gb|EFI24521.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] Length = 723 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 51 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 102 >gi|308183706|ref|YP_003927833.1| transcription-repair coupling factor [Helicobacter pylori PeCan4] gi|308065891|gb|ADO07783.1| transcription-repair coupling factor [Helicobacter pylori PeCan4] Length = 1001 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 36/178 (20%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD--L 122 I R ++++ V ++ G + + VR L Sbjct: 411 HLIA-RYVAQSDSVPA-----------------------KDRLGKGSFLKLKAKVRTKLL 446 Query: 123 HRTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 E +ER L ++ + E+ S + +AI I +LSS Sbjct: 447 EIAGKIIEL-AAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSH 503 >gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638] gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638] Length = 1148 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ IV+ HGVG + E G+K E+ ++ + L VPV I Sbjct: 479 VGQPIVHLEHGVGRYAGMTTLETGGIKGEYLMLTY-SGDAKLYVPVSSLHLI 529 >gi|218507810|ref|ZP_03505688.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli Brasil 5] Length = 318 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 3 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 54 >gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC 25976] gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC 25976] Length = 1162 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 13/116 (11%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ ++ L VPV I R + Sbjct: 497 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVL-LYANEAKLYVPVASLHLIS-RYIGG 554 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 A L + +A W++ Q+ KI D+ AE++ + +SQ Sbjct: 555 ADETAP-LHKLGSEA------WAKTRQKAAEKIR--DV--AAELLDVYTKRESQKG 599 >gi|217978360|ref|YP_002362507.1| transcription-repair coupling factor [Methylocella silvestris BL2] gi|217503736|gb|ACK51145.1| transcription-repair coupling factor [Methylocella silvestris BL2] Length = 1176 Score = 35.9 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 17/106 (16%) Query: 1 MTFQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 + +K+ + F G+ +V+ HG+G ++ + G + + + + Sbjct: 485 LVRARKKSRKAKDFLSEVGALAAGDIVVHVDHGIGRFVGLQSIDAGGAPHDCLELHYAEG 544 Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRR 99 L +PV + R SE V+ L + G W +R Sbjct: 545 A-KLFLPVENLELLS-RYGSEDTEVQ--LDRLGGGG------WQKR 580 >gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000] gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000] Length = 1196 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G++ V+ +G+G + + G + ++ + + K L +PV + + Sbjct: 491 NIGDYAVHVNYGIGKYLGLTRKLSNGKEKDYLTLEYAKGD-KLYIPVEQMNFV 542 >gi|257138824|ref|ZP_05587086.1| transcription-repair coupling factor [Burkholderia thailandensis E264] Length = 898 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ EF + + L VPV + Sbjct: 222 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYA-GDSKLYVPVAQ 269 >gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas tunicata D2] gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas tunicata D2] Length = 1157 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ IV+ HGVG ++ + AG++ EF I++ + L VPV Sbjct: 487 KVGQPIVHLDHGVGRYQGLQTLDAAGVQTEFVTISY-NGEAKLYVPVS 533 >gi|261840243|gb|ACY00009.1| transcription-repair coupling factor [Helicobacter pylori 52] Length = 999 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLH 123 I R ++++ V ++ G + + A+V L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------TKDRLGKGSFLKLKAKVKTKLL 446 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 S+ + +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|288575748|ref|ZP_06393934.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] gi|288567230|gb|EFC88790.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] Length = 724 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 56 NIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 107 >gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17] gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17] Length = 1169 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG ++ V G EF ++ + L VPV I Sbjct: 495 RIGSPVVHIDHGVGRYQGLETITVEGEASEFLMLGYAGSS-KLYVPVSSLHLI 546 >gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307] gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307] Length = 1183 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 23/41 (56%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57 G+ +V+ HG+G ++++ ++G ++ V+ + + + Sbjct: 493 GDFVVHRNHGIGRFLKMEKLAISGDARDYLVVQYLDGLLRV 533 >gi|78189837|ref|YP_380175.1| transcription-repair coupling factor [Chlorobium chlorochromatii CaD3] gi|78172036|gb|ABB29132.1| Transcription-repair coupling factor [Chlorobium chlorochromatii CaD3] Length = 1099 Score = 35.9 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 Q + G+++V+ +G+G ++ + E +I + L V V Sbjct: 397 QKLKVGDYVVHEDYGIGIFKSLETITAGNSEQESVLIEYANGD-QLFVNVQNI 448 >gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2] gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1120 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 435 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 479 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 480 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 531 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 532 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 570 >gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1] gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1] Length = 1131 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 442 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 486 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 487 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 538 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 539 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 577 >gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483] gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483] Length = 1120 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 435 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 479 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 480 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 531 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 532 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 570 >gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas sp. SM9913] gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas sp. SM9913] Length = 1157 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HGVG ++ + AG+ EF I + L VPV Sbjct: 487 KEGQPVVHLDHGVGRYQGLQTIDAAGVVTEFVTI-IYAGEAKLYVPVS 533 >gi|254482039|ref|ZP_05095281.1| transcriptional regulator, AraC family [marine gamma proteobacterium HTCC2148] gi|214037729|gb|EEB78394.1| transcriptional regulator, AraC family [marine gamma proteobacterium HTCC2148] Length = 337 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 10/90 (11%) Query: 83 KLVRGKARVKRTMWSRRAQEYDAKINS-GDLIAIAEVVRDLH-----RTDSQPEKSYSER 136 +++RG V++T + R I S GD + IA+V LH +S + R Sbjct: 225 EILRGLNSVEKTTAAVR----QLLIQSAGDFLDIAQVAESLHVSERTLRRRLDAESTNFR 280 Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIE 166 +E + + RE ++ E +L++ Sbjct: 281 ATFEEIKDLLAREYLVKTELTVAEIAHLLD 310 >gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a] gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a] Length = 1119 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 430 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 474 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 475 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 526 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 527 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 565 >gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas arsenicoxydans] gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd) [Herminiimonas arsenicoxydans] Length = 1148 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G + ++ + EF + + KD L VPV + I R Sbjct: 483 KIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDT-KLYVPVSQLHVIS-RY--S 538 Query: 75 AHFVERA-LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 E A L + K RRA E + A + +L+ + E Sbjct: 539 GASPEDAPLHALGSGQWEKA---KRRAAE--------KIRDTAAELLNLYARRALRE 584 >gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200] Length = 1162 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 490 KVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLIS-RYSVG 547 Query: 75 AHF 77 A Sbjct: 548 ADE 550 >gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32] gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32] Length = 1162 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 490 KVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLIS-RYSVG 547 Query: 75 AHF 77 A Sbjct: 548 ADE 550 >gi|325523528|gb|EGD01838.1| transcription-repair coupling factor [Burkholderia sp. TJI49] Length = 827 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 152 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GDSKLYVPVAQ 199 >gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f] gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f] Length = 1119 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 430 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 474 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 475 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 526 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 527 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 565 >gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22] gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22] Length = 1124 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 435 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 479 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 480 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 531 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 532 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 570 >gi|218673155|ref|ZP_03522824.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli GR56] Length = 585 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 123 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 174 >gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1] gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1] Length = 1162 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 490 KVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLIS-RYSVG 547 Query: 75 AHF 77 A Sbjct: 548 ADE 550 >gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp. Marseille] gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase) [Janthinobacterium sp. Marseille] Length = 1147 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HG+G + ++ + EF + + KD L VPV + I R Sbjct: 482 KIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDT-KLYVPVSQLHVIS-RY--S 537 Query: 75 AHFVERA-LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 E A L + K RRA E + A + +L+ + E Sbjct: 538 GASPEDAPLHALGSGQWEKA---KRRAAE--------KIRDTAAELLNLYARRALRE 583 >gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4] gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4] Length = 1124 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 435 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 479 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 480 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKSKIKDIARDLIKLYS 531 Query: 128 QPEKSYSERQLYESALNRMVREI--AAVNSISEPEAINLIEV 167 Q + E+ S + + RE+ + + + ++ I+V Sbjct: 532 QRRQ---EKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDV 570 >gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1149 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVL-LYANEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1149 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ +GVG + + G+K E+ V+ ++ L VPV I R + Sbjct: 484 KIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVL-LYANEAKLYVPVASLHLIS-RYIGG 541 Query: 75 AHF 77 A Sbjct: 542 ADE 544 >gi|296314532|ref|ZP_06864473.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] gi|296838843|gb|EFH22781.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] Length = 753 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G + ++ G E ++ + + L VPV + I Sbjct: 77 NIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYA-GEAQLYVPVSQLHLI 128 >gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4] gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4] Length = 1160 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGV + + G+ E+ + + L VPV I Sbjct: 488 KVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGD-KLYVPVSNLHMI 539 >gi|241763661|ref|ZP_04761711.1| flagellin domain protein [Acidovorax delafieldii 2AN] gi|241367136|gb|EER61502.1| flagellin domain protein [Acidovorax delafieldii 2AN] Length = 521 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 G+++ VR+L + S S+RQ + +N++ E+ + +E L++ + Sbjct: 86 GNILQR---VRELAVQSANATNSASDRQALNAEVNQLTSELDRIAKTTEFNGRKLLDGSF 142 Query: 170 SSKS 173 +S + Sbjct: 143 TSAA 146 >gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 705 Score = 35.9 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56 R G+ +V+P HG G + ++ AG + V+ M Sbjct: 651 RPGDRVVHPQHGQGIVLSVESH--AGEER-VQVMFHPSIGMK 689 >gi|297380724|gb|ADI35611.1| transcription-repair coupling factor [Helicobacter pylori v225d] Length = 999 Score = 35.9 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLH 123 I R ++++ V ++ G + + A+V L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------VKDRLGKGSFLKLKAKVKTKLL 446 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 S+ + +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3] gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3] Length = 1160 Score = 35.9 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGV + + G+ E+ + + L VPV I Sbjct: 488 KVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGD-KLYVPVSNLHMI 539 >gi|329960904|ref|ZP_08299183.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057] gi|328532190|gb|EGF58994.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057] Length = 1164 Score = 35.9 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 32/146 (21%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HGVG + E + F D + Sbjct: 475 FTPGDYVVHTDHGVGRFAGLVRIPNGNTTQEVMKLVFQNDDVVF---------------V 519 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127 H + + K + R W K+ I ++ RDL + S Sbjct: 520 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKDRTKTKIKDIARDLIKLYS 571 Query: 128 QPEKSYSERQLYESALNRMVREIAAV 153 Q E+ S + + RE+ A Sbjct: 572 QRR---EEKGFQYSPDSFLQRELEAS 594 >gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] Length = 1114 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVG 62 G+ +V+ HG+G Q + G E V+ F D + + VPV Sbjct: 453 GDLVVHVGHGIGIFRG--MQLIRGEDRTEEHLVLEFA-DNVRIFVPVS 497 >gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] Length = 1148 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+ +V+ HGVG + E G+K E+ ++ + L VPV I R A Sbjct: 479 PGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-SDAKLYVPVSSLHLIS-RYAGGA 536 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 L + G A W+R Q+ K+ +A + D++ + E Sbjct: 537 EE-NAPLHKLGGDA------WARARQKAAEKVR-----DVAAELLDIYAQRAAKE 579 >gi|288549507|ref|ZP_06390702.1| transcription-repair coupling factor [Enterobacter cancerogenus ATCC 35316] gi|288318220|gb|EFC57158.1| transcription-repair coupling factor [Enterobacter cancerogenus ATCC 35316] Length = 992 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ IV+ HGVG + E G+K E+ ++ + + L VPV I Sbjct: 323 PGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLI 373 >gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185] gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185] Length = 1141 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 33/131 (25%) Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73 F G+++V+ HG+G + + E + F + + Sbjct: 453 FTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVF---------------V 497 Query: 74 EAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHR--- 124 H + + K + R W K+ I ++ RDL + Sbjct: 498 SIHSLHKVSKYKGKEGEAPRLNKLGTGAW--------EKLKERTKTKIKDIARDLIKLYS 549 Query: 125 -TDSQPEKSYS 134 + SYS Sbjct: 550 QRRQEKGFSYS 560 >gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM 14469] gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM 14469] Length = 1179 Score = 35.9 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 21/39 (53%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53 G+++V+ +HG+G I++ EV + ++ I + Sbjct: 503 NVGDYVVHESHGLGIYRGIEKIEVDHVMKDYMKIEYSGG 541 >gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2080] gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma proteobacterium HTCC2080] Length = 1150 Score = 35.9 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 24/155 (15%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK----AIDIGMR 70 R G +V+ HGVG ++ E+ G EF ++ + L VPVG A G Sbjct: 481 RPGVPVVHLQHGVGRYMGLQSLEIDGAPAEFLLLQYADAD-KLYVPVGSLHLIARYTG-- 537 Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130 ++ L + + K RRA+E +A + +++ + Sbjct: 538 --ADPDTAP--LHRLGSEQWEKAR---RRARE--------KANDVAAQLLEVYARREARQ 582 Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 E L E+A R E + + AI + Sbjct: 583 GFQCE--LDETAWQRFSEEFPFEETPDQSAAIEAV 615 >gi|32491336|ref|NP_871590.1| asparagine synthetase B [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166543|dbj|BAC24733.1| asnB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 545 Score = 35.9 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 12/112 (10%) Query: 41 MKLEFFVIAFDKDKMCLKVPV----GKAIDIGMRKLSEAHFVERALK---LVRGKARVKR 93 K+ ++V +D + +P+ K G++ + + K Sbjct: 302 KKVIYYVETYDITTIRASIPMYLISQKIKSSGIKMILSGEGADEIFGGYLYFHNAPSEKD 361 Query: 94 TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNR 145 E K+ S + A + + + + +++ + A+ Sbjct: 362 L-----HDELVRKLKSLHIYDCARANKSMLAFGIEARFPFLDKKFLDVAMRI 408 >gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] Length = 1187 Score = 35.5 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ +G+G +++ E G+ ++ I + KD L VP + I Sbjct: 518 SVGDYVVHEKYGLGIYRGMEKIESDGITKDYINIEY-KDASNLFVPASQLELI 569 >gi|145480461|ref|XP_001426253.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393327|emb|CAK58855.1| unnamed protein product [Paramecium tetraurelia] Length = 2327 Score = 35.5 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 11/100 (11%) Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE----VVRDLHRT 125 R + E L + T R Q K++SG + A +V L R Sbjct: 1881 RDIIAKKLREIVL----TQDIYMPTN--PRYQITSIKLDSGTPMQSAAKCPILVSFLCRK 1934 Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165 P+K Y ER+L E EI + E + ++ Sbjct: 1935 YEGPDK-YFERKLKEKREFGKALEIELTKQLKEEDIQKML 1973 >gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999] Length = 1170 Score = 35.5 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 TG+ +V+ HGVG ++ + G+ EF I + K L VPV Sbjct: 498 STGQPVVHIEHGVGRYLGLETLDAGGVTTEFVAIEYGKGA-KLYVPVSS 545 >gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107] gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107] Length = 1192 Score = 35.5 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G + + ++G ++ V+ + L+V Sbjct: 487 RKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVRDYLVVQYADG--ILRVAA 544 Query: 62 GKAIDIG 68 + +G Sbjct: 545 DQLGSLG 551 >gi|330996173|ref|ZP_08320063.1| transcription-repair coupling factor [Paraprevotella xylaniphila YIT 11841] gi|329573677|gb|EGG55268.1| transcription-repair coupling factor [Paraprevotella xylaniphila YIT 11841] Length = 1133 Score = 35.5 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 29/126 (23%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71 Q F G+++V+ HGVG + G E I + D + Sbjct: 444 QEFNIGDYVVHVDHGVGKFGGLVRIPNGGTMQEVIKIIYQNDDVVF-------------- 489 Query: 72 LSEAHFVERALKLVRGKARVKRTM------WSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125 H + + K + R W R + KI IA RDL + Sbjct: 490 -VSIHSLHKVSKYRGKEGEPPRLNKLGTGAWERLKERTKTKIK-----DIA---RDLIKL 540 Query: 126 DSQPEK 131 S + Sbjct: 541 YSLRRQ 546 >gi|319943635|ref|ZP_08017916.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599] gi|319742868|gb|EFV95274.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599] Length = 1264 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G + ++ EF +++ + L VPV IG Sbjct: 567 KPGDPVVHAQHGIGRYMGLVNIDLGEGAAEFLHLSYA-NDATLYVPVAMLHLIG 619 >gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus bovienii SS-2004] gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus bovienii SS-2004] Length = 1146 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E G++ E+ ++ + + L VPV I Sbjct: 479 GQPVVHLEHGVGRYQGLMMLEAGGIQAEYLILTYAGED-KLYVPVSSLHLI 528 >gi|218460982|ref|ZP_03501073.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli Kim 5] Length = 825 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 158 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 209 >gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902] gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902] Length = 1192 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 R R G+ +V+ HG+G + + ++G ++ V+ + L+V Sbjct: 487 RKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVRDYLVVQYADG--ILRVAA 544 Query: 62 GKAIDIG 68 + +G Sbjct: 545 DQLGSLG 551 >gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae NCTC 13129] gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae] Length = 1264 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 1 MTFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEV--AGMK--LEFFVIAF 50 + ++R A R+ +TG+++V+ HG+G ++ E+ + E+ V+ + Sbjct: 498 IAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEY 557 Query: 51 DKDKM-----CLKVPVGKAI 65 K L VP+ Sbjct: 558 AASKRGQPADQLYVPMDSLD 577 >gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str. 'morsitans'] gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str. 'morsitans'] Length = 1150 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HGVG + E +K E+ ++ + + L VPV I Sbjct: 481 GQPVVHLEHGVGRYAGMTTLEAGSIKAEYLILTYACND-KLYVPVSSLHLI 530 >gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis VL426] gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis VL426] Length = 1157 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ +++ L VPV I Sbjct: 485 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEC-QNEAKLYVPVSSLNLI 536 >gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4] gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4] gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1] Length = 1159 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +G + G+ +V+ +GV ++ ++ G+ +F ++ + D L +PV + + Sbjct: 486 EGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDD-RLYLPVDRLSLV 540 >gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str. Hildenborough] gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str. Hildenborough] Length = 1160 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 +G + G+ +V+ +GV ++ ++ G+ +F ++ + D L +PV + + Sbjct: 487 EGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDD-RLYLPVDRLSLV 541 >gi|76801308|ref|YP_326316.1| citrate (si)-synthase [Natronomonas pharaonis DSM 2160] gi|76557173|emb|CAI48748.1| citrate (si)-synthase [Natronomonas pharaonis DSM 2160] Length = 378 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 11/79 (13%) Query: 117 EVVRDLHRTDSQP-------EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169 EVV L + + S +E + + + ++VRE+A + E + + + Sbjct: 47 EVVYLLWHGELPTADELGSFKSSMAEERHLDDGVQQLVRELAEA----DEEPMAALRSIV 102 Query: 170 SSKSSKTEKSTSENQDKAA 188 SS S+ + +E D+AA Sbjct: 103 SSLSAYDPDADAEPTDEAA 121 >gi|323455806|gb|EGB11674.1| expressed protein [Aureococcus anophagefferens] Length = 519 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRM-VREIAAVNSISEPEAINLIEVNLSSK 172 I E VR + R DS ++Q Y++A+ + + E + ++ E +A ++++ + Sbjct: 18 EIFEAVRAVARGDSVLGLLNQQKQHYDAAMVLLAISEAVRLGALDEADARDVLDATRYER 77 Query: 173 SSKTEKSTSEN 183 + +N Sbjct: 78 EAFAAGHDDDN 88 >gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6] gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6] Length = 1128 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 2 TFQQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 + + K + F G+++V+ HG+G I++ V + ++ I + Sbjct: 442 SAKTKSGDRIRDFSELSVGDYVVHENHGLGVYRGIEKITVDHVVKDYVKIEYADGG 497 >gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21] gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21] Length = 1157 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 485 KPGQPVVHIEHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 536 >gi|227497779|ref|ZP_03927965.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM 15434] gi|226832806|gb|EEH65189.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM 15434] Length = 1250 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 17 GEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM-----CLKVPVGKAIDI 67 G+ +V+ HGVG E+ + V E+ VI + K L VP + Sbjct: 548 GDLVVHAQHGVGRFVELMRRNVGTGKNAATREYVVIEYAPSKRGQPGDRLLVPTDALDQV 607 >gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11] gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11] Length = 1151 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ +V M E+ ++ + +D+ L VPV I Sbjct: 482 KIGQPVVHLDHGIGRYMGLQTLDVGDMPAEYMMLEY-QDQAKLYVPVSSLNLI 533 >gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5] gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum AIU301] gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5] gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum AIU301] Length = 1144 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G + V G + I L +PV Sbjct: 473 GDLVVHQDHGIGRYDGLVTLSVEGAPHDCLRI-LYDGDQKLFLPVENID 520 >gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B] gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B] Length = 1155 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG ++ E+ EF V+ + D L VPVG I Sbjct: 481 SPGVPVVHLEHGVGRYIGLQTLEIENDPAEFLVLEYASDD-KLYVPVGSLHLI 532 >gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1143 Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G ++V+ +G+G ++ V G+ E+ + + + L VP I Sbjct: 483 KYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYA-NNSYLYVPTTNLDVI 534 >gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1] gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1] Length = 1194 Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 19/112 (16%) Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +K +A GF+ G+ IV+ G+G + + +V G+ +F V+ + + +P Sbjct: 512 SKKSEAFGAGFKDLKEGDLIVHTDFGIGRYAGLTKMQVNGVPGDFLVLEYAGRD-KIYLP 570 Query: 61 VGKAIDIGMRKL-----SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107 VG+ MR + + V+ L + K RR +E K+ Sbjct: 571 VGR-----MRLIQKFTGGDPSQVQ--LDKLGTPGWEKT---KRRVKEQLLKM 612 >gi|312113596|ref|YP_004011192.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC 17100] gi|311218725|gb|ADP70093.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC 17100] Length = 1249 Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G +K + AG + + + L +P+ Sbjct: 512 PGDLMVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGD-KLFLPIENME 560 >gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) [NC10 bacterium 'Dutch sediment'] Length = 1152 Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ HG+G +++ V G + ++ +I + L VP GK I Sbjct: 475 GDFVVHEDHGIGVYKGLRQLTVGGTEGDYLLI-LYAEHAKLYVPTGKLHLI 524 >gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales bacterium TW-7] gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales bacterium TW-7] Length = 1157 Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HGVG ++ + AG+ EF I + L VPV Sbjct: 487 KEGQPVVHLDHGVGRYQGLQTIDAAGVITEFVTI-IYAGESKLYVPVS 533 >gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7] gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7] Length = 1157 Score = 35.5 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG +++ V G + EF + + L VPV + Sbjct: 487 PGAPVVHEEHGVGRYLGLQKLAVGGQETEFLALEYAGGD-KLYVPVSSLHLV 537 >gi|308185328|ref|YP_003929461.1| transcription-repair coupling factor [Helicobacter pylori SJM180] gi|308061248|gb|ADO03144.1| transcription-repair coupling factor [Helicobacter pylori SJM180] Length = 999 Score = 35.5 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 +K GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 RKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVE 79 I R ++++ V Sbjct: 411 HLIA-RYVAQSDSVP 424 >gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS] gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS] Length = 668 Score = 35.5 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 G +V+ HGVG + V ++ EF + + K L VPV I + Sbjct: 3 VGAPVVHEEHGVGRYQGLMTLTVGEIEAEFLQLEYAKSD-KLYVPVASLHFISL 55 >gi|328790701|ref|XP_625062.3| PREDICTED: hypothetical protein LOC552684 [Apis mellifera] Length = 2872 Score = 35.5 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 86 RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121 + ++ +R WSRR +Y + G EV+R+ Sbjct: 1885 KHGSKGERDEWSRRKYDYMEREKEGRPYETIEVLRE 1920 >gi|315186109|gb|EFU19871.1| cysteinyl-tRNA synthetase [Spirochaeta thermophila DSM 6578] Length = 470 Score = 35.5 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 101 QEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPE 160 +E++ I GD ++ + L R + ER + ++R++ ++ +I+ + Sbjct: 361 REFEEAI--GDDLSTPRALAVLWRAVKDEDLPPEERAVLTVTMDRILG-LSLAEAIASDD 417 Query: 161 AI--NLIEVNLSSKSSKTEKSTSENQ 184 A+ L+E+ ++ + ++ +E Sbjct: 418 ALEPELLELVQRREALRKQRDFAEAD 443 >gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB] gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB] Length = 1147 Score = 35.5 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ +HG+G + ++ + EF + + ++ L VPV + Sbjct: 475 KVGDPVVHESHGIGRYRGLIRMDLGNGEQEFLELHYA-NEAKLFVPVAQ 522 >gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341] gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341] Length = 1155 Score = 35.5 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4] gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4] Length = 1210 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+++V+ HG+ ++ + GM LE ++ F + + L VP+ + I Sbjct: 529 VGDYVVHVEHGIAKYMGLRTIDQEGMPLELMILEFAE-QAKLYVPLTRLDLI 579 >gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80] gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80] Length = 1157 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 485 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 536 >gi|212550582|ref|YP_002308899.1| transcription-repair coupling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548820|dbj|BAG83488.1| transcription-repair coupling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1109 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54 Q F+ G+++V+ HG+G + E G E + F + Sbjct: 428 QQFQVGDYLVHIDHGIGKFGGLIRTETNGKMQEVVKMTFLNED 470 >gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3] gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3] Length = 1155 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|163815909|ref|ZP_02207279.1| hypothetical protein COPEUT_02089 [Coprococcus eutactus ATCC 27759] gi|158448719|gb|EDP25714.1| hypothetical protein COPEUT_02089 [Coprococcus eutactus ATCC 27759] Length = 353 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 G+ + F+ L+ R +R MW +R Q+ + SG EV R Sbjct: 280 GLGDVKVKKFLNNVLQAELAPIRERRQMWEKRPQDVYDILKSGS-----EVAR 327 >gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium profundum 3TCK] gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium profundum 3TCK] Length = 1151 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E G+ E+ ++ + L VPV I Sbjct: 482 QIGQPVVHIDHGIGRYQGLQTLEAGGITTEYVMLEYHAGA-KLYVPVASLHLI 533 >gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385] gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385] Length = 1155 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|295093587|emb|CBK82678.1| tryptophanyl-tRNA synthetase [Coprococcus sp. ART55/1] Length = 353 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120 G+ + F+ L+ R +R MW +R Q+ + SG EV R Sbjct: 280 GLGDVKVKKFLNNVLQAELAPIRERRQMWEKRPQDVYDILKSGS-----EVAR 327 >gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str. Bath] gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str. Bath] Length = 1147 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G +V+ HGVG ++ + G++ EF I + D L VPV + Sbjct: 481 EIGAPVVHREHGVGRYLGLQRIDTGGVESEFLTIRYANDD-KLYVPVSALGMV 532 >gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068] gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068] Length = 1087 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ AHG+G IK E E I FD + VP + + Sbjct: 430 REGDLVVHLAHGIGRFAGIKLLERGETSEEHLEIEFDGGT-RIYVPAVRIDLV 481 >gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286] gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9] gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236] gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9] gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286] gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236] Length = 1157 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 485 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 536 >gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)] gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)] Length = 1157 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 485 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 536 >gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2] gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2] Length = 1155 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587] gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587] Length = 1155 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80] gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2] gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10] gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101] gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1] gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27] gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757] gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80] gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33] gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2] gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395] gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10] gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101] gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27] gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1] gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757] Length = 1155 Score = 35.5 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|307298712|ref|ZP_07578515.1| transcription-repair coupling factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306915877|gb|EFN46261.1| transcription-repair coupling factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 1012 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 12/83 (14%) Query: 17 GEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G+++V+ +G+G ++ E + G E+ ++ + + VPV + + + + Sbjct: 352 GDYVVHKEYGIGRYLGVRTVENILG-TREYLLLEYRDGN-KIYVPVDRVDRVH-KYIGST 408 Query: 76 HFVERALKLVRGKARVKRTMWSR 98 ++ L +RG T W+R Sbjct: 409 EGIQ--LNSLRG------TAWTR 423 >gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52] gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52] Length = 1155 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii HTCC2633] gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii HTCC2633] Length = 1162 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 A G+ +V+ HG+G +K V + + + K L +PV Sbjct: 485 AEAGALTPGDLVVHADHGLGRYLGLKTLSVGEAPHDCLELEYA-GKSKLYLPVENIE 540 >gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8] gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8] Length = 1173 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG ++ G EF + + L VPV I Sbjct: 499 RIGAPVVHIDHGVGRYKGLETLTAGGQSDEFLTLEYA-GGSKLYVPVSSLHLI 550 >gi|296087837|emb|CBI35093.3| unnamed protein product [Vitis vinifera] Length = 613 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 18/84 (21%) Query: 104 DAKINSGDLIAIA-EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIA----------- 151 A + G + A +VV++ + Q + + E QL E+ L ++++E+ Sbjct: 18 QALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQSGEKIM 77 Query: 152 -AVNSISEPEAIN-----LIEVNL 169 SI + EAI L+++ L Sbjct: 78 HYGQSIDDEEAIQSQIPRLLDIVL 101 >gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51] gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51] Length = 1155 Score = 35.5 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|296087823|emb|CBI35079.3| unnamed protein product [Vitis vinifera] Length = 613 Score = 35.5 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 18/84 (21%) Query: 104 DAKINSGDLIAIA-EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIA----------- 151 A + G + A +VV++ + Q + + E QL E+ L ++++E+ Sbjct: 18 QALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQSGEKIM 77 Query: 152 -AVNSISEPEAIN-----LIEVNL 169 SI + EAI L+++ L Sbjct: 78 QYGQSIDDEEAIQSQIPRLLDIVL 101 >gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis 3_1_45B] gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis 3_1_45B] Length = 1194 Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + E EF I + K+ L VP+ I Sbjct: 486 KPGDAVVHADHGIGRYQGLVHMETPDGDAEFLEITY-KNDAKLFVPITNLQLI 537 >gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002] gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002] Length = 1129 Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G + ++ + E + + D L VPV + I Sbjct: 467 KVGDPVVHEQHGIGRYLGLVSMDLGEGETELMQLEYA-DGAKLYVPVSQLQLI 518 >gi|145630885|ref|ZP_01786662.1| transcription-repair coupling factor [Haemophilus influenzae R3021] gi|144983545|gb|EDJ91013.1| transcription-repair coupling factor [Haemophilus influenzae R3021] Length = 564 Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|225463994|ref|XP_002263874.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 607 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 18/84 (21%) Query: 104 DAKINSGDLIAIA-EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAV--------- 153 A + G + A +VV++ + Q + + E QL E+ L ++++E+ + Sbjct: 12 QALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQSGEKIM 71 Query: 154 ---NSISEPEAIN-----LIEVNL 169 SI + EAI L+++ L Sbjct: 72 HYGQSIDDEEAIQSQIPRLLDIVL 95 >gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum StLB037] gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum StLB037] Length = 1195 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 16/65 (24%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAG-------MKLEFFVIA-------FDKDKMCLKVP 60 + G+ +V+ HG+G E+ ++EV+ E+ V+ + D L VP Sbjct: 509 KPGDVVVHATHGIGKFLELTQREVSSGGRNAVKTTKEYLVLEYAPAKRGYPGD--KLFVP 566 Query: 61 VGKAI 65 + Sbjct: 567 TDQLD 571 >gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] Length = 1168 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G+ +V+ HG+G +K V + + L +PV Sbjct: 501 GDLVVHIEHGIGRYEGLKTLSVNDAPHACLELQYAA-DAKLYLPVENID 548 >gi|218512758|ref|ZP_03509598.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli 8C-3] Length = 277 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G +K E AG + + D+ L +PV Sbjct: 211 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYA-DEAKLFLPVENID 262 >gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase) [Methylacidiphilum infernorum V4] gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase) [Methylacidiphilum infernorum V4] Length = 1060 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ G+ I + + G E + FD+ + L VP+ +A I R + Sbjct: 411 KEGDIVVHLQKGICKFKGI--KTIEGTNTEMVELEFDQ-QAKLYVPIDQAHLIA-RYIGG 466 Query: 75 AHFVERALKLVRGK 88 + + L + G Sbjct: 467 TKKLPK-LDSLGGN 479 >gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1] gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1] Length = 1160 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KLGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans LB400] gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans LB400] Length = 1160 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + L VPV + Sbjct: 483 KLGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYA-GDSKLYVPVAQ 530 >gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51] gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51] Length = 1149 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + ++ L VPV I Sbjct: 480 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENA-KLYVPVANLHLI 531 >gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS] gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS] Length = 1150 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + ++ L VPV + Sbjct: 483 KIGDPVVHAHHGIGRYRGLVTVDLGEGETEFLHLQYARET-KLYVPVSQ 530 >gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1] gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1] Length = 1141 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + ++ L VPV I Sbjct: 472 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENA-KLYVPVANLHLI 523 >gi|153007315|ref|YP_001381640.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5] gi|152030888|gb|ABS28656.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5] Length = 1229 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 A + G+ +V+ HG+ + + ++ G++ +F V+A+D L +PV K + Sbjct: 504 AAAFRDLNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVLAYDGAD-RLYLPVAKLRQV 562 >gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4] gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4] Length = 1222 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKM-----CLKVPVGK 63 + G+ +V+ HG+G E+ E++V G + E+ VI + K L VP+ Sbjct: 518 ALKAGDLVVHDQHGIGRFVEMVERQVRGGDGSSRREYLVIEYAPGKRGAAGDRLYVPMES 577 Query: 64 AIDI 67 + Sbjct: 578 LGQL 581 >gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3] gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3] Length = 1156 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 15/121 (12%) Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 A TG+ +V+ HG+G +K ++ + + + L +PV + Sbjct: 482 AEASALTTGDLVVHLDHGIGRYEGLKTLDIQQAPHDCLEL-VYAGESKLYLPVENIDLL- 539 Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRR---AQEYDAKINSGDLIAIAEVVRDLHRT 125 R S++ + L + G W R A+E + G + A+ R L T Sbjct: 540 TRYGSDSEGAQ--LDRLGG------AGWQARKSKAKERLRAMAEGLIALAAK--RALRET 589 Query: 126 D 126 D Sbjct: 590 D 590 >gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1] gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1] Length = 1117 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 + G++IV+ +GVG +++ +V G E + F D + Sbjct: 435 KALHPGDYIVHVDYGVGRFAGLEKVDVNGKLQEAVRLVFRDDDL 478 >gi|317181253|dbj|BAJ59039.1| transcription-repair coupling factor [Helicobacter pylori F32] Length = 999 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 34/165 (20%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 GE +V+ +GVG +++ + V G K +F IA+ + L +PV I R ++++ Sbjct: 364 GEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENLHLIA-RYVAQSD 421 Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLHRTDSQPEKSYSE 135 V ++ G + + A+V L S+ + +E Sbjct: 422 SVP-----------------------IKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAE 458 Query: 136 RQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 R L ++ + E+ S + +AI I +LSSK Sbjct: 459 RNLILGKKMDTHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M] gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans CGD2] gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans CGD2] gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M] Length = 1156 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + + L VPV + Sbjct: 482 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GESKLYVPVAQ 529 >gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1] gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1] Length = 1149 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + ++ L VPV I Sbjct: 480 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENA-KLYVPVANLHLI 531 >gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1] Length = 1141 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + ++ L VPV I Sbjct: 472 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENA-KLYVPVANLHLI 523 >gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586] gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586] Length = 1155 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMISEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|225464005|ref|XP_002264619.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 607 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 18/84 (21%) Query: 104 DAKINSGDLIAIA-EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAV--------- 153 A + G + A +VV++ + Q + + E QL E+ L ++++E+ + Sbjct: 12 QALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQSGEKIM 71 Query: 154 ---NSISEPEAIN-----LIEVNL 169 SI + EAI L+++ L Sbjct: 72 QYGQSIDDEEAIQSQIPRLLDIVL 95 >gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC 13032] Length = 1214 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 1 MTFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF 50 + ++R A R+ G+ +V+ HG+G ++ E+ + AG + E+ V+ + Sbjct: 486 IAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSRREYIVLEY 545 Query: 51 DKDKM-----CLKVPVGKAI 65 K L VP+ Sbjct: 546 APSKRGQPGDQLYVPMDALD 565 >gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440] gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440] Length = 1149 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + ++ L VPV I Sbjct: 480 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENA-KLYVPVANLHLI 531 >gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451] gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451] Length = 1156 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMISEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC 13032] gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium glutamicum ATCC 13032] Length = 1217 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 1 MTFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF 50 + ++R A R+ G+ +V+ HG+G ++ E+ + AG + E+ V+ + Sbjct: 489 IAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSRREYIVLEY 548 Query: 51 DKDKM-----CLKVPVGKAI 65 K L VP+ Sbjct: 549 APSKRGQPGDQLYVPMDALD 568 >gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573] gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573] Length = 1156 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 483 KPGQPVVHIDHGIGRYLGLQTLEAGGMISEYVMLEY-QNEAKLYVPVSSLNLI 534 >gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R] gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1214 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 1 MTFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF 50 + ++R A R+ G+ +V+ HG+G ++ E+ + AG + E+ V+ + Sbjct: 486 IAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSRREYIVLEY 545 Query: 51 DKDKM-----CLKVPVGKAI 65 K L VP+ Sbjct: 546 APSKRGQPGDQLYVPMDALD 565 >gi|220932114|ref|YP_002509022.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] gi|219993424|gb|ACL70027.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] Length = 249 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 23/124 (18%) Query: 15 RTGEH-IVYPAHG-----VGTITEIKEQEVAGMKLEFFVIAFD-------------KDKM 55 G+ IV P G V TI EIKE ++ G ++ + + K KM Sbjct: 33 NPGDKLIVCP--GNCRDYVATIEEIKENQITGKIIKEYKNRNEPSLNITLAQALPKKRKM 90 Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115 L + KA +IG+R + ++L + K R K W + A+E + G + + Sbjct: 91 DLVI--QKATEIGVRSIIPLKTTRTIVRLNKKKERKKTDRWQKIAKEAAKQSGRGRIPTV 148 Query: 116 AEVV 119 V Sbjct: 149 ERVY 152 >gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15] Length = 1177 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 R G +V+ HGVG ++ V G EF ++ + L VPV L Sbjct: 503 RIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYA-GGSKLYVPVSSL------HLIS 555 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + K R WS Q+ KI AE++ R +++ S+ Sbjct: 556 RYAGNDTEHAPLHKLGTDR--WSTAKQKALEKIR----DTAAELLDVYARREARKGFSFE 609 Query: 135 E 135 + Sbjct: 610 D 610 >gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase [Corynebacterium glutamicum ATCC 13032] Length = 1209 Score = 35.1 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 1 MTFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAF 50 + ++R A R+ G+ +V+ HG+G ++ E+ + AG + E+ V+ + Sbjct: 481 IAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSRREYIVLEY 540 Query: 51 DKDKM-----CLKVPVGKAI 65 K L VP+ Sbjct: 541 APSKRGQPGDQLYVPMDALD 560 >gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 1175 Score = 35.1 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 T ++ + A + F G+++V+ HG+G I++ G+ + I ++ + + Sbjct: 491 TKKKYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKIVTEGVARDNLKINYEGGTLYVN 550 Query: 59 V 59 + Sbjct: 551 I 551 >gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1166 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G ++ E AG + + D+ L +PV Sbjct: 499 GLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYA-DEAKLFLPVENID 550 >gi|331696043|ref|YP_004332282.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190] gi|326950732|gb|AEA24429.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190] Length = 874 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 19/101 (18%) Query: 76 HFVERALKLVRGKARVKRTMWS------RRAQEYDAKI-----------NSGDLIAIAEV 118 + R L +RG+A R W+ +R QE A++ + DL AE+ Sbjct: 447 DQLRRELADLRGEADAMRAQWNAERQAIKRVQELRAQLEQVRHDIQDAERAYDLNRAAEL 506 Query: 119 VRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISE 158 R + D + + ER+L E +R++RE+ I+E Sbjct: 507 -RFTRQADLERKLEAEERRLAEKQGEHRLLREVVTAEEIAE 546 >gi|116515116|ref|YP_802745.1| hypothetical protein BCc_180 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256970|gb|ABJ90652.1| transcription-repair coupling factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 683 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69 ++ F+ + +++ +G+G ++ + G ++FVI +K+ L VP+ I + Sbjct: 8 KKTFQKNQLVIHTQYGIGRYIDLCTLKNKGKLTDYFVI-MYANKVKLYVPITSLNLINI 65 >gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] Length = 1166 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65 G G +V+ HG+G ++ E AG + + D+ L +PV Sbjct: 499 GLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYA-DEAKLFLPVENID 550 >gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65] gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65] Length = 1143 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75 G +V+ HGVG ++ + G EF + + L VPV +S Sbjct: 476 PGAAVVHIDHGVGRYRGLETLDAGGEINEFVTLEYA-GGAKLYVPVASLHL-----ISRY 529 Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108 + + + K WS + ++ KI Sbjct: 530 SGADTEIAPLHKLGTDK---WSAQRRKALEKIR 559 >gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797] gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797] Length = 1112 Score = 34.7 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ +HG+ ++ E G + E + F +DK+ + VPV + Sbjct: 443 NVGDFVVHLSHGIARFRGLELLEKEGYREEHLSLEF-RDKVQMYVPVSLVHLV 494 >gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans PV-1] gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans PV-1] Length = 1109 Score = 34.7 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HGVG ++ + G +F I + DK + VPV Sbjct: 446 KPGDPVVHEDHGVGRYHGLETIDEDGDLADFIKIEYA-DKAHVFVPVE 492 >gi|145629319|ref|ZP_01785118.1| transcription-repair coupling factor [Haemophilus influenzae 22.1-21] gi|144978822|gb|EDJ88545.1| transcription-repair coupling factor [Haemophilus influenzae 22.1-21] Length = 765 Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC 33392] gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC 33392] Length = 1149 Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ +I + ++ L VPVG I R + Sbjct: 483 KIGQPVVHLDHGVGRYGGLVTLDTGGLKAEYLLINYA-NESKLYVPVGSLHLIS-RYVGG 540 Query: 75 AHF 77 + Sbjct: 541 SDE 543 >gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K] gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K] Length = 1241 Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+ + + ++ G++ +F V+A+D L +PV K + Sbjct: 513 RELNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVLAYDGAD-RLYLPVAKLRQV 567 >gi|228470004|ref|ZP_04054920.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3] gi|228308385|gb|EEK17223.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3] Length = 1114 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 G++IV+ HGVG + EV G E + + + Sbjct: 424 HAISPGDYIVHSDHGVGQFDGLLTTEVDGKPREVVKLVYQNKDV 467 >gi|307151183|ref|YP_003886567.1| TIR protein [Cyanothece sp. PCC 7822] gi|306981411|gb|ADN13292.1| TIR protein [Cyanothece sp. PCC 7822] Length = 275 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 4/97 (4%) Query: 83 KLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYES 141 K+ + + R+ W ++ + + K+ SG ++ + + + L + + ++ Sbjct: 103 KIYKDEDRIDYLHYWDQKIKNLEDKLKSGSILDVTSIYKTLQQYADIKRNIDQLTDILKN 162 Query: 142 ALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178 +N + E+ + I +E L S TEK Sbjct: 163 -INALTPELH--RQSDFEQIIQAVETRLEKDKSNTEK 196 >gi|261838840|gb|ACX98606.1| transcription-repair coupling factor [Helicobacter pylori 51] Length = 999 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVE 79 I R ++++ V Sbjct: 411 HLIA-RYVAQSDSVP 424 >gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans 2CP-1] gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 1233 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+ + + ++ G++ +F V+A+D L +PV K + Sbjct: 505 RELNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVLAYDGAD-RLYLPVAKLRQV 559 >gi|332299515|ref|YP_004441436.1| transcription-repair coupling factor [Porphyromonas asaccharolytica DSM 20707] gi|332176578|gb|AEE12268.1| transcription-repair coupling factor [Porphyromonas asaccharolytica DSM 20707] Length = 1115 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 G++IV+ HGVG + EV G E + + + Sbjct: 424 HAISPGDYIVHSDHGVGQFDGLLTTEVDGKPREVVKLVYQNKDV 467 >gi|317182774|dbj|BAJ60558.1| transcription-repair coupling factor [Helicobacter pylori F57] Length = 999 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLH 123 I R ++++ V ++ G + + A+V L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------IKDRLGKGSFLKLKAKVKTKLL 446 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 S+ + +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|325981304|ref|YP_004293706.1| transcription-repair coupling factor [Nitrosomonas sp. AL212] gi|325530823|gb|ADZ25544.1| transcription-repair coupling factor [Nitrosomonas sp. AL212] Length = 1154 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68 + G+ +V+ HG+G + +V G EF + +D L VPV + IG Sbjct: 482 KPGDPVVHEQHGIGRYLGLISMDVGEGEPGELSEFLSLEYDGGD-KLYVPVSQLYLIG 538 >gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1] gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1] Length = 1157 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + + L VPV + Sbjct: 481 KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-GESKLYVPVSQ 528 >gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] Length = 1077 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 G+ +V+ AHG+G +K+ E E I F + VP K + Sbjct: 423 GDLVVHLAHGIGRYRGLKKIEKQRQVEEHLEIEF-HGGTKVYVPASKVELV 472 >gi|313886626|ref|ZP_07820338.1| transcription-repair coupling factor [Porphyromonas asaccharolytica PR426713P-I] gi|312923922|gb|EFR34719.1| transcription-repair coupling factor [Porphyromonas asaccharolytica PR426713P-I] Length = 1115 Score = 34.7 bits (79), Expect = 5.9, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 G++IV+ HGVG + EV G E + + + Sbjct: 424 HAISPGDYIVHSDHGVGQFDGLLTTEVDGKPREVVKLVYQNKDV 467 >gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM 11109] gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM 11109] Length = 1168 Score = 34.7 bits (79), Expect = 5.9, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ IV+ HGVG + + V +F + + L +PV + + Sbjct: 487 KVGDPIVHLDHGVGLYRGLVKLAVGSEINDFLQLEYLGGD-RLYLPVDRLHLV 538 >gi|322712149|gb|EFZ03722.1| myosin class II heavy chain (MHC), putative [Metarhizium anisopliae ARSEF 23] Length = 2286 Score = 34.7 bits (79), Expect = 5.9, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 15/131 (11%) Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124 GMR ++E +E L +R + + SR +E++ SG +EV R R Sbjct: 1788 ERSGMRAVNECKRLEGLLGELRTENHKLQQAASRYQREFEEARESG----ASEVKR--TR 1841 Query: 125 TDSQPEKSYSERQL------YESALNRMVREIAAVN-SISEPEAIN--LIEVNLSSKSSK 175 Q E + Q+ E +++ E+ V +A N L+E S+K+++ Sbjct: 1842 MSLQTEIDAANNQVNVIREELEEQNSKLRTELDNVKLEADTAKAQNEMLLEEAQSTKAAE 1901 Query: 176 TEKSTSENQDK 186 E + + Q++ Sbjct: 1902 LEAAERKYQNE 1912 >gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] Length = 1179 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 21/40 (52%) Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55 G+++V+ HG+G +++ + G+ + I + + + Sbjct: 513 PGDYVVHEQHGIGVFKGVEQLVIEGISRDNLKIEYADNNV 552 >gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238] gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238] Length = 1151 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ +V M E+ ++ + ++ L VPV I Sbjct: 482 KVGQPVVHLDHGIGRYMGLQTLDVGDMPAEYMMLEYL-NETKLYVPVSSLNLI 533 >gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM 4166] Length = 1145 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF ++ + D+ L VPV I Sbjct: 474 REGAPVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYA-DEAKLYVPVASLHLI 525 >gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri A1501] gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri A1501] Length = 1148 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF ++ + D+ L VPV I Sbjct: 477 REGAPVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYA-DEAKLYVPVASLHLI 528 >gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM 44702] Length = 1231 Score = 34.7 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKM-----CLKVPVGK 63 G+ +V+ HG+G ++ E+ + + E+ V+ + K L VP+ + Sbjct: 532 ALEPGDLVVHDQHGIGRFVKMTERTIGKGDDASRREYLVLEYAPSKRGGPGDQLYVPMDQ 591 Query: 64 AI 65 Sbjct: 592 LD 593 >gi|317011784|gb|ADU85531.1| transcription-repair coupling factor [Helicobacter pylori SouthAfrica7] Length = 999 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVE 79 I R ++++ V Sbjct: 411 HLIA-RYVAQSDSVP 424 >gi|226365687|ref|YP_002783470.1| hypothetical protein ROP_62780 [Rhodococcus opacus B4] gi|226244177|dbj|BAH54525.1| hypothetical protein [Rhodococcus opacus B4] Length = 192 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA---IAEVVRDLHRTDSQPEKSYS 134 V+ + R R R+ WS+R +E+ K+ L+ +AEV R R D + +++Y+ Sbjct: 67 VDEHFFVQRFTPRSSRSPWSKRNREFAEKLAEAGLLEPAGVAEVER--ARADGRWDRAYA 124 Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 ++ E + + A + ++ + Sbjct: 125 GQKAAEIPQDFLA---ALARNPEAEAFYATLDSH 155 >gi|126732332|ref|ZP_01748132.1| tetrapyrrole methylase family protein [Sagittula stellata E-37] gi|126707201|gb|EBA06267.1| tetrapyrrole methylase family protein [Sagittula stellata E-37] Length = 296 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 40/107 (37%) Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116 + VP+G A DI +R AL ++R + +A Sbjct: 20 VAVPIGNARDITLR----------ALDVLRDAEVL-----------------------VA 46 Query: 117 EVVRDLHRTDSQPEKSYSERQLY-------ESALNRMVREIAAVNSI 156 E R L + ERQL E R++ EIAA ++ Sbjct: 47 EDTRSLRHLMDIHGIALGERQLLAYHDHSGERTRQRVLDEIAAGKAV 93 >gi|15895547|ref|NP_348896.1| Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum ATCC 824] gi|15025284|gb|AAK80236.1|AE007729_3 Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum ATCC 824] gi|325509695|gb|ADZ21331.1| Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum EA 2018] Length = 454 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 12/75 (16%) Query: 101 QEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE-- 158 Q Y +NSG + + E+V DL D S+++L + N+ E ISE Sbjct: 12 QRYIIDVNSGSIHEVDEMVYDLIDEDKIR----SKKKLLDRLKNKYKEE-----EISEAY 62 Query: 159 PEAINLIEV-NLSSK 172 E LI+ L SK Sbjct: 63 DEIKELIDEGVLYSK 77 >gi|317178272|dbj|BAJ56061.1| transcription-repair coupling factor [Helicobacter pylori F16] Length = 999 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64 QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV Sbjct: 352 QKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVENL 410 Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI-AEVVRDLH 123 I R ++++ V ++ G + + A+V L Sbjct: 411 HLIA-RYVAQSDSVP-----------------------IKDRLGKGSFLKLKAKVKTKLL 446 Query: 124 RTDSQPEKSYSERQL-YESALNRMVREIAAVNS-------ISEPEAINLIEVNLSSK 172 S+ + +ER L ++ + E+ S + +AI I +LSSK Sbjct: 447 EIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSK 503 >gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619] gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619] Length = 1149 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + + L VPV I Sbjct: 480 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGA-KLYVPVANLHLI 531 >gi|262165996|ref|ZP_06033733.1| transcription-repair coupling factor [Vibrio mimicus VM223] gi|262025712|gb|EEY44380.1| transcription-repair coupling factor [Vibrio mimicus VM223] Length = 981 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 308 KPGQPVVHIDHGIGRYLGLQTLEAGGMISEYVMLEY-QNEAKLYVPVSSLNLI 359 >gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae 86-028NP] gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae 86-028NP] Length = 1146 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031] gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031] Length = 1146 Score = 34.3 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae PittEE] gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae PittEE] Length = 1146 Score = 34.3 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021] gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae 22.4-21] Length = 1160 Score = 34.3 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 494 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 551 Query: 75 AHF 77 + Sbjct: 552 SDE 554 >gi|115371924|ref|ZP_01459237.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] gi|115371159|gb|EAU70081.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] Length = 769 Score = 34.3 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60 +K +A GF+ G+ IV+ G+G + + +V G+ +F V+ + + +P Sbjct: 87 SKKSEAFGAGFKDLKEGDLIVHTDFGIGRYAGLTKMQVNGVPGDFLVLEYAGRD-KIYLP 145 Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107 VG+ ++K + + L + K RR +E K+ Sbjct: 146 VGRMRL--IQKFTGGDPSQVQLDKLGTPGWEKT---KRRVKEQLLKM 187 >gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127] gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127] Length = 1146 Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae PittGG] gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae PittGG] Length = 1146 Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd KW20] gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW] gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae Rd KW20] gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW] Length = 1146 Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae PittII] gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae PittII] gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866] Length = 1146 Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48] gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48] Length = 1149 Score = 34.3 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G +V+ HGVG + E+ G EF + + + L VPV I Sbjct: 480 REGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGA-KLYVPVANLHLI 531 >gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810] Length = 1146 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ +V+ HGVG + + G+K E+ ++ + ++ L VPV I R + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYA-NESKLYVPVTSLHLIS-RYVGG 537 Query: 75 AHF 77 + Sbjct: 538 SDE 540 >gi|257053363|ref|YP_003131196.1| 30S ribosomal protein S19P [Halorhabdus utahensis DSM 12940] gi|256692126|gb|ACV12463.1| ribosomal protein S19 [Halorhabdus utahensis DSM 12940] Length = 141 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIA 151 ++ + +AE++ R + SY +RQL E A + E A Sbjct: 21 LEELQDMSVEEVAELLPARMRRSIKRGLSYEKRQLLEEARDAGEEETA 68 >gi|86160747|ref|YP_467532.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85777258|gb|ABC84095.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 1241 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+ + + ++ G++ +F V+A+D L +PV K + Sbjct: 513 RELNEGDLVVHVEHGIAKYLGLTKMQIRGVEGDFLVLAYDGAD-RLYLPVAKLRQV 567 >gi|153820314|ref|ZP_01972981.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457] gi|126509143|gb|EAZ71737.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457] Length = 691 Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 19 KPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY-QNEAKLYVPVSSLNLI 70 >gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC 14018] gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC 14019] gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC 14019] Length = 1200 Score = 34.3 bits (78), Expect = 7.4, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA---GM-KLEFFVIAFDKDKM-----CLKVPVGKAI 65 + G+ +V+ HG+G ++++ + G E+ I + K L +P + Sbjct: 525 KPGDFVVHDQHGIGKFIGMRQRNIKTSSGEATREYLEIEYAPSKRNAPADKLFIPTDQLD 584 Query: 66 DI 67 + Sbjct: 585 LV 586 >gi|256840409|ref|ZP_05545917.1| CRISPR-associated protein [Parabacteroides sp. D13] gi|256737681|gb|EEU51007.1| CRISPR-associated protein [Parabacteroides sp. D13] Length = 1424 Score = 34.3 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 119 VRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 ++ L R + S SE R LY + RE+A ++ + + + L+ N Sbjct: 445 IKVLGREKKRNALSASESRALYPEEKEILARELAIKENMKKADVLKLLFEN 495 >gi|298377533|ref|ZP_06987485.1| CRISPR-associated protein, Csn1 family [Bacteroides sp. 3_1_19] gi|298265552|gb|EFI07213.1| CRISPR-associated protein, Csn1 family [Bacteroides sp. 3_1_19] Length = 1424 Score = 34.3 bits (78), Expect = 7.6, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 119 VRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVN 168 ++ L R + S SE R LY + RE+A ++ + + + L+ N Sbjct: 445 IKVLGREKKRNALSASESRALYPEEKEILARELAIKENMKKADVLKLLFEN 495 >gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] Length = 1221 Score = 34.3 bits (78), Expect = 7.8, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 7 RDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + Q F G+++V+ HG+G I++ E + ++ I + D L +P + Sbjct: 539 QGKAIQSFSELAVGDYVVHEEHGLGIYRGIEKVERDKITKDYIKIEY-GDGGNLYLPATR 597 Query: 64 AIDI 67 I Sbjct: 598 LESI 601 >gi|258625932|ref|ZP_05720803.1| transcription-repair coupling factor [Vibrio mimicus VM603] gi|258581797|gb|EEW06675.1| transcription-repair coupling factor [Vibrio mimicus VM603] Length = 872 Score = 34.3 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 + G+ +V+ HG+G ++ E GM E+ ++ + +++ L VPV I Sbjct: 199 KPGQPVVHIDHGIGRYLGLQTLEAGGMISEYVMLEY-QNEAKLYVPVSSLNLI 250 >gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] Length = 1161 Score = 34.3 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67 R G+ +V+ HG+G ++ ++ G + +F + + L +PV + I Sbjct: 501 REGDLVVHADHGIGRYQGLQHLQLQGNEGDFLNLEYAGKD-RLYLPVERIEKI 552 >gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium SS3/4] Length = 1201 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 ++ K+ + G+++V+ +HG+G I++ E + ++ + + D L +P Sbjct: 516 YEGKKISSFSELSVGDYVVHESHGLGIYKGIEKIEQDHVIKDYIKVEY-GDGGNLYLPAT 574 Query: 63 KAIDI 67 + I Sbjct: 575 RLEGI 579 >gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas haloplanktis ANT/505] gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas haloplanktis ANT/505] Length = 1137 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 + G+ +V+ HGVG ++ + AG+ EF I + + L VPV Sbjct: 467 KEGQPVVHLDHGVGRYQGLQTIDAAGVVTEFVTITYA-SEAKLYVPVS 513 >gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum H-6-12] gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum H-6-12] Length = 1070 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 17/120 (14%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+++V+ +G+G +K+ ++ ++ EF I + + L VP+ + I R +S Sbjct: 428 KDGDYVVHVNYGIGIFRGLKKLKIDDVEKEFIYIEYA-NNSFLYVPLEEMHLIQ-RYVSS 485 Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134 + + +R++ W +E K+ IAE +L + +Q E + Sbjct: 486 SPEPPQI-------SRLESHQW----EETKRKVKE-SAKEIAE---ELLKVYAQRELTEG 530 >gi|315500152|ref|YP_004088955.1| glutamyl-tRNA(gln) amidotransferase, b subunit [Asticcacaulis excentricus CB 48] gi|315418164|gb|ADU14804.1| glutamyl-tRNA(Gln) amidotransferase, B subunit [Asticcacaulis excentricus CB 48] Length = 489 Score = 34.3 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 23 PAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERAL 82 PA G + I+ ++ + + K + P G++++++ +E+A+ Sbjct: 380 PAQIAGLVELIETNVISSKIAKTVFEHMWEGKGTIT-PAEIVEKHGLKQVTDTGAIEKAI 438 Query: 83 KLV 85 + Sbjct: 439 DEI 441 >gi|22298714|ref|NP_681961.1| N-acetylmuramic acid-6-phosphate etherase [Thermosynechococcus elongatus BP-1] gi|81743216|sp|Q8DJQ1|MURQ_THEEB RecName: Full=N-acetylmuramic acid 6-phosphate etherase; Short=MurNAc-6-P etherase; AltName: Full=N-acetylmuramic acid 6-phosphate hydrolase; AltName: Full=N-acetylmuramic acid 6-phosphate lyase gi|22294895|dbj|BAC08723.1| tlr1171 [Thermosynechococcus elongatus BP-1] Length = 308 Score = 34.3 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 18/93 (19%) Query: 59 VPVGKAI---DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115 VPV + DI +R L L+ G R+K + + I++G ++ + Sbjct: 174 VPVEQVQRSADIDIRLLVGPE-------LLAGSTRLKAGTAT---KMALNIISTGVMVQL 223 Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVR 148 +V + + + S R+L + AL + Sbjct: 224 GKVYGN-----RMVDVAVSNRKLLDRALRILTD 251 >gi|242007634|ref|XP_002424638.1| protein C20orf11, putative [Pediculus humanus corporis] gi|212508104|gb|EEB11900.1| protein C20orf11, putative [Pediculus humanus corporis] Length = 229 Score = 34.0 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164 I +G + +V +LH PE S+R LY + E+ N + EA++ Sbjct: 72 DAIQNGAIQEATAMVNELH-----PELLDSDRYLYFHLQQLHLIELIRANKL--EEALHF 124 Query: 165 IEVNLSSKSSKTEKSTSENQDKAA 188 + LS + +E + A Sbjct: 125 AQEQLSEAGESDPNALAELERTLA 148 >gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] Length = 1120 Score = 34.0 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 + G+ +V+ HG+G + ++ + EF + + K+ L VPV + Sbjct: 455 KIGDPVVHSNHGIGRYMGLVSMDLGEGETEFLYLDYAKEA-KLYVPVSQ 502 >gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185] gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185] Length = 1162 Score = 34.0 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 489 KVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLIS-RYSVG 546 Query: 75 AHF 77 A Sbjct: 547 ADE 549 >gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175] gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175] Length = 1165 Score = 34.0 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 489 KVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLIS-RYSVG 546 Query: 75 AHF 77 A Sbjct: 547 ADE 549 >gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678] Length = 1165 Score = 34.0 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 489 KVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLIS-RYSVG 546 Query: 75 AHF 77 A Sbjct: 547 ADE 549 >gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155] gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155] Length = 1162 Score = 34.0 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 + G+ IV+ HGV + + G+ E+ + + L VPV I R Sbjct: 489 KVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLIS-RYSVG 546 Query: 75 AHF 77 A Sbjct: 547 ADE 549 >gi|227499501|ref|ZP_03929608.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] gi|227218380|gb|EEI83631.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] Length = 731 Score = 34.0 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56 K +A + F+ G+ + + GVG I +I +QE G +L V+AFD + Sbjct: 673 KTEASDKDFKIGDKVKHSKWGVGMIVQINKQE-KGNEL---VVAFDNKGLK 719 >gi|297808261|ref|XP_002872014.1| EMB1211 [Arabidopsis lyrata subsp. lyrata] gi|297317851|gb|EFH48273.1| EMB1211 [Arabidopsis lyrata subsp. lyrata] Length = 867 Score = 34.0 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%) Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVN-SISEPEAINLIEVNLSSKSSKTEKS- 179 L + + +K+ ER+ + E+ V I EAI ++ L K + EK+ Sbjct: 591 LEKWTEEKKKANEERK------EMIQNELELVEAEICLEEAIEDMDEVLKQKEQEEEKNT 644 Query: 180 ----TSENQD 185 T E++D Sbjct: 645 EMGLTEEDED 654 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.167 0.497 Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,745,509,557 Number of Sequences: 14124377 Number of extensions: 173913727 Number of successful extensions: 528970 Number of sequences better than 10.0: 2746 Number of HSP's better than 10.0 without gapping: 2346 Number of HSP's successfully gapped in prelim test: 1111 Number of HSP's that attempted gapping in prelim test: 525842 Number of HSP's gapped (non-prelim): 3699 length of query: 188 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 57 effective length of database: 2,992,500,243 effective search space: 170572513851 effective search space used: 170572513851 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 78 (34.3 bits)