RPSBLAST alignment for GI: 254780417 and conserved domain: pfam02559
>gnl|CDD|145606 pfam02559, CarD_TRCF, CarD-like/TRCF domain. CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes. This family includes the presumed N-terminal domain. CarD interacts with the zinc-binding protein CarG, to form a complex that regulates multiple processes in Myxococcus xanthus. This family also includes a domain to the N-terminal side of the DEAD helicase of TRCF proteins. TRCF displaces RNA polymerase stalled at a lesion, binds to the damage recognition protein UvrA, and increases the template strand repair rate during transcription. This domain is involved in binding to the stalled RNA polymerase. Length = 98
Score = 77.9 bits (193), Expect = 1e-15
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+P HGVG I+ EV G K E++V+ + D DK L VPV + IG
Sbjct: 2 LKVGDYVVHPDHGVGRFEGIETIEVGGEKREYYVLEYADGDK--LYVPVDQLDLIGRYIG 59
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
SE V ++ W +R + KI SGD+ AE++R L
Sbjct: 60 SEDE--------VPVLDKLGGGTWKKRKR----KIKSGDIDIAAELLRLLA 98