RPSBLAST alignment for GI: 254780417 and conserved domain: pfam02559

>gnl|CDD|145606 pfam02559, CarD_TRCF, CarD-like/TRCF domain. CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes. This family includes the presumed N-terminal domain. CarD interacts with the zinc-binding protein CarG, to form a complex that regulates multiple processes in Myxococcus xanthus. This family also includes a domain to the N-terminal side of the DEAD helicase of TRCF proteins. TRCF displaces RNA polymerase stalled at a lesion, binds to the damage recognition protein UvrA, and increases the template strand repair rate during transcription. This domain is involved in binding to the stalled RNA polymerase. Length = 98
 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 14  FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-DKDKMCLKVPVGKAIDIGMRKL 72
            + G+++V+P HGVG    I+  EV G K E++V+ + D DK  L VPV +   IG    
Sbjct: 2   LKVGDYVVHPDHGVGRFEGIETIEVGGEKREYYVLEYADGDK--LYVPVDQLDLIGRYIG 59

Query: 73  SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
           SE          V    ++    W +R +    KI SGD+   AE++R L 
Sbjct: 60  SEDE--------VPVLDKLGGGTWKKRKR----KIKSGDIDIAAELLRLLA 98