RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (188 letters)



>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2
          ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli}
          (A:460-544)
          Length = 85

 Score = 57.9 bits (140), Expect = 8e-10
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
             G+ +V+  HGVG    +   E  G+  E+ ++ +  +   L VPV     I      
Sbjct: 21 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY-ANDAKLYVPVSSLHLISRYAGG 79

Query: 74 EA 75
            
Sbjct: 80 AE 81


>2p84_A ORF041; structural genomics, hypothetical protein, PSI,
           protein structure initiative, NEW YORK structural
           genomics research consortium; 1.80A {Staphylococcus
           phage 37} (A:1-68)
          Length = 68

 Score = 26.6 bits (58), Expect = 2.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
           E  R+ HRTD Q   SY+E+Q ++         I  ++ I +   IN I
Sbjct: 9   EFDRERHRTDYQKGMSYAEQQDFDMGFTIWFDHIEDLDLIEKDGTINRI 57


>1xjv_A Protection of telomeres 1; protein-DNA complex,
           single-stranded DNA, transcription/DNA complex; 1.73A
           {Homo sapiens} (A:1-145)
          Length = 145

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 61  VGKAIDIGMRKLSEAHFVERALKLV-RGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
            G         LS+       + +V +   ++   ++S   +       +GD++  
Sbjct: 21  YGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRF 76


>2gcf_A Cation-transporting ATPase PACS; ferredoxin-like fold,
           beta-alpha-beta-BETA-alpha-beta, structural genomics,
           structural proteomics in europe; NMR {Synechocystis SP}
           (A:)
          Length = 73

 Score = 24.7 bits (54), Expect = 8.0
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 68  GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQ-EYDAKINSGDLIAIAE 117
           GMR  + A  +ERA+  V G    +      +A   Y  +     L    E
Sbjct: 11  GMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 61


>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular
           transferase; HET: B12 DCA; 2.00A {Propionibacterium
           freudenreichiisubsp} (A:65-564)
          Length = 500

 Score = 24.5 bits (53), Expect = 9.9
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 88  KARVKRTMWSRRAQEYDAK 106
           K R  R +W++   ++  K
Sbjct: 235 KLRAARMLWAKLVHQFGPK 253


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,276,726
Number of extensions: 53778
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 32
Length of query: 188
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 105
Effective length of database: 2,150,234
Effective search space: 225774570
Effective search space used: 225774570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)