Query gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 191
No_of_seqs 120 out of 1712
Neff 6.3
Searched_HMMs 23785
Date Mon May 30 10:32:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780418.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1feu_A 50S ribosomal protein L 100.0 0 0 350.1 16.8 178 5-190 2-180 (206)
2 2zjr_S 50S ribosomal protein L 100.0 0 0 357.1 4.5 175 6-190 1-177 (237)
3 1b75_A Protein (50S ribosomal 99.9 1.8E-27 7.6E-32 191.0 0.0 93 6-98 2-94 (94)
4 3lyw_A YBBR family protein; st 90.1 0.94 3.9E-05 23.5 7.6 79 104-186 3-85 (90)
5 2kps_A Uncharacterized protein 85.4 0.25 1.1E-05 27.1 1.4 68 107-178 6-79 (98)
6 1bdf_A RNA polymerase alpha su 63.6 3.1 0.00013 20.2 2.2 28 159-187 109-136 (235)
7 1htw_A HI0065; nucleotide-bind 42.8 3.4 0.00014 20.0 -0.5 76 15-103 16-94 (158)
8 2kq1_A BH0266 protein; solutio 38.4 18 0.00076 15.4 8.6 81 102-186 7-97 (119)
9 1q7l_B Aminoacylase-1; catalys 37.5 7.6 0.00032 17.8 0.7 32 7-39 15-46 (88)
10 1kvz_A RC-rnase4; antitumor, B 25.8 25 0.0011 14.5 1.7 12 108-119 96-107 (107)
No 1
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=100.00 E-value=0 Score=350.08 Aligned_cols=178 Identities=26% Similarity=0.480 Sum_probs=166.7
Q ss_pred EEEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECC-CCCCEEEEEEEEEC
Q ss_conf 69999999168761778999978994389967898855699980022100111466225799616-77520378612121
Q gi|254780418|r 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDI-GKELVHVIPKDYQL 83 (191)
Q Consensus 5 ~~~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i-~g~~~~vlikevQ~ 83 (191)
+++|+|++|+..|++ +|||+|+||||+||++. +.+++++.++|.++++. .+.++++.|++ +|++++|++||+||
T Consensus 2 ~~~l~a~~Re~~g~~---aLRr~G~VPaViYG~~~-~~~i~v~~~e~~k~l~~-~~~~~~i~l~~~dg~~~~vlikevQ~ 76 (206)
T 1feu_A 2 EYRLKAYYREGEKPS---ALRRAGKLPGLMYNRHL-NRKVYVDLVEFDKVFRQ-ASIHHVIVLELPDGQSLPTLVRQVNL 76 (206)
T ss_dssp EEEEECEECSSSCHH---HHHHTTEEEEEEECSSC-EEEEEEEHHHHHHHHHH-HTTTSEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCHH---HHHHCCCCEEEEECCCC-CCCEEECHHHHHHHHHH-HHCCCEEEEEECCCCEEEEEEEEEEE
T ss_conf 089999992688806---79858995099967999-81289728999977633-21032157897189689999999874
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEHHHCCCEEEECCCCCCCCCEEEEE
Q ss_conf 43268465448999328976999963699605654432123113576545788880767963468322223569779999
Q gi|254780418|r 84 DPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163 (191)
Q Consensus 84 ~p~~~~i~HvDF~~v~~~~~v~v~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~p~~IPe~ievDvs~L~~Gd~i~v~ 163 (191)
||+++.++|+|||+++ +++++++|||+|+|+ |+|++.||+|++.+++|+|+|+|.+||++|+||||+|++||+++++
T Consensus 77 ~pv~~~i~HvDF~~v~-~~~i~v~VPv~~~G~--~~gvk~GG~l~~~~~ei~v~~~p~~IPe~I~VDvs~L~iGd~i~v~ 153 (206)
T 1feu_A 77 DKRRRRPEHVDFFVLS-DEPVEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS 153 (206)
T ss_dssp CSSSSCEEEEEEEECC-SSCEEEEEEEEEESC--CHHHHTTCEEEECCSEEEEEECGGGCCSCEEEECTTCCTTEEEEGG
T ss_pred CCCCCCCEEEEEEECC-CCEEEEEECEEEECC--CCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCEEEEE
T ss_conf 1225773799988158-976999966599755--3211157368987638999832026985999956457689879998
Q ss_pred EEECCCCCEECCCCCCEEEEEECCCCC
Q ss_conf 753588867836898269999448877
Q gi|254780418|r 164 DIRLPEKTSSMSQLNITIATIVAPISG 190 (191)
Q Consensus 164 Dl~lpegv~~l~d~~~~vvsv~~P~~g 190 (191)
||+||+|+++++|++.+||+|.+|++.
T Consensus 154 Dl~lpegv~~~~d~~~~vv~v~~p~~~ 180 (206)
T 1feu_A 154 DLKLPPGVELAVSPEETIAAVVPPEDV 180 (206)
T ss_dssp GSCCCTTCEESSCTTCEEEEEECSSSS
T ss_pred EECCCCCCEEECCCCCEEEEEECCCCC
T ss_conf 342899968904899669999679876
No 2
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W 1vou_W 1vow_W ...
Probab=100.00 E-value=0 Score=357.11 Aligned_cols=175 Identities=27% Similarity=0.462 Sum_probs=164.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECCCC-CCEEEEEEEEECC
Q ss_conf 999999916876177899997899438996789885569998002210011146622579961677-5203786121214
Q gi|254780418|r 6 CKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGK-ELVHVIPKDYQLD 84 (191)
Q Consensus 6 ~~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i~g-~~~~vlikevQ~~ 84 (191)
++|+|++|+ +|++|++|+||||+||++ +|++++++.++|.++++. .+.+++|+|+++| ++++||+|+||||
T Consensus 1 i~l~a~~R~------~k~~R~~G~VPaViYG~~-e~~~i~v~~~~l~k~l~~-~g~~~ii~L~idG~~~~~vlikevQ~~ 72 (237)
T 2zjr_S 1 MELTAKPRT------PKQKLDESMIAAVAYNKE-NNVSFALDRKAFDRAFRQ-QSTTGLFDITVEGGETFPALVKAVQMD 72 (237)
T ss_dssp CCCCBCCSC------CHHHHSSSCCCEEEESSS-CCCCCBCCHHHHHHHHHH-HTTSCCCBCCCTTCCCCBCCEEEEEEC
T ss_pred CEEEEEECH------HHHHHHCCCCCEEEECCC-CCEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCEEEEEEEEEEEC
T ss_conf 968874342------678863898878994799-888899859999999873-576468999976990689999999851
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEE-HHHCCCEEEECCCCCCCCCEEEEE
Q ss_conf 3268465448999328976999963699605654432123113576545788880-767963468322223569779999
Q gi|254780418|r 85 PVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCP-ANNIPDSITVDLNDLKIGDSIHME 163 (191)
Q Consensus 85 p~~~~i~HvDF~~v~~~~~v~v~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~-p~~IPe~ievDvs~L~~Gd~i~v~ 163 (191)
|+++.++|+|||+++++++|+++|||+|+|+ |+|+++||+|++.+++|+|+|+ |.+||++|+||||+|++||+|+++
T Consensus 73 pv~~~i~HvDF~~V~~~~kv~v~VPi~~~Ge--~~gvk~GG~l~~~~~~v~v~~~~P~~IPe~IeVDvs~L~iGd~i~v~ 150 (237)
T 2zjr_S 73 KRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAG 150 (237)
T ss_dssp SSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSEEECSCSEEEEECCCTTCCCSCCEEECTTCCSSCEEETT
T ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEECC--CCCCCCCCEEEEEEEEEEEECCCHHHCCHHEEECCCCCCCCCEEEEE
T ss_conf 4579547889999248945999843899514--43323575268876421023468345826228142237589879998
Q ss_pred EEECCCCCEECCCCCCEEEEEECCCCC
Q ss_conf 753588867836898269999448877
Q gi|254780418|r 164 DIRLPEKTSSMSQLNITIATIVAPISG 190 (191)
Q Consensus 164 Dl~lpegv~~l~d~~~~vvsv~~P~~g 190 (191)
||+||+|+++++|++.+||+|.+||+.
T Consensus 151 Dl~lp~gv~l~~d~d~~V~~V~~pr~~ 177 (237)
T 2zjr_S 151 DIKLPEGCTLAADPELTVVSVLPPRLT 177 (237)
T ss_dssp TSCCSTTCCCCSCTTCEEEEEECCC--
T ss_pred EECCCCCEEECCCCCCEEEEEECCCCC
T ss_conf 442799808825999579999688743
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* 2qbe_V ...
Probab=99.92 E-value=1.8e-27 Score=190.99 Aligned_cols=93 Identities=30% Similarity=0.507 Sum_probs=88.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf 99999991687617789999789943899678988556999800221001114662257996167752037861212143
Q gi|254780418|r 6 CKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLDP 85 (191)
Q Consensus 6 ~~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i~g~~~~vlikevQ~~p 85 (191)
++|+|++|+.+||+++|+||++|+||||+||++.+|++++++.++|.+++++.++.+.+++|+++|+++.|++||||+||
T Consensus 2 ~~L~a~~R~~~GK~~~r~lR~~G~vPaViYG~~~~~~~i~v~~~~l~~~~~~~~~~~~~i~l~~~g~~~~vlikeiQ~~p 81 (94)
T 1b75_A 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHP 81 (94)
T ss_dssp CCEEECSSCCSSSSSSSSTTTTTBCCEEEECSSSCCEEECCBSHHHHHHHTTTHHHHTCEEEEESSCEEEECCSEEECCS
T ss_pred EEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEEECCC
T ss_conf 48999991577857899999869960999789987636887689986555114642068999979979999811042188
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 2684654489993
Q gi|254780418|r 86 VSDILIHADFLQV 98 (191)
Q Consensus 86 ~~~~i~HvDF~~v 98 (191)
+++.++|+||++.
T Consensus 82 v~~~i~HvDF~r~ 94 (94)
T 1b75_A 82 YKPKLQHIDFVRA 94 (94)
T ss_dssp SSCCCCEEEEEBC
T ss_pred CCCCEEEEECCCC
T ss_conf 8898898953469
No 4
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A
Probab=90.14 E-value=0.94 Score=23.49 Aligned_cols=79 Identities=13% Similarity=-0.017 Sum_probs=50.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEHHHCCC---EEEECCCCCCCCCEEEEEEEECCCCCEECC-CCCC
Q ss_conf 999963699605654432123113576545788880767963---468322223569779999753588867836-8982
Q gi|254780418|r 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPD---SITVDLNDLKIGDSIHMEDIRLPEKTSSMS-QLNI 179 (191)
Q Consensus 104 v~v~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~p~~IPe---~ievDvs~L~~Gd~i~v~Dl~lpegv~~l~-d~~~ 179 (191)
-+.+||+.+.|. ++|..--.... .=++++++.-..|.. ...||+++++.|..-.-=.+.+|.|+.+.+ +|+.
T Consensus 3 ~t~~Vpl~~~n~--p~~~~v~~~~~--tV~V~v~G~r~~in~~di~a~VDLs~l~~G~~~v~v~v~~P~gv~~v~v~P~~ 78 (90)
T 3lyw_A 3 PTLTLSLIAKNT--PANSMIMTKLP--SVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEISPRV 78 (90)
T ss_dssp CEEEEEEEEESC--CTTEEECSCCC--EEEEEEEECCTTCCSTTCEEEEECTTCCSEEEEEECEECCCTTEEEEEEESSE
T ss_pred CCEEEEEEEECC--CCCCEEECCCC--EEEEEEECCCCCCCHHHEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCCE
T ss_conf 508976998608--99809957999--79999990665557587899999878989738977898589984899978898
Q ss_pred EEEEEEC
Q ss_conf 6999944
Q gi|254780418|r 180 TIATIVA 186 (191)
Q Consensus 180 ~vvsv~~ 186 (191)
+-+++..
T Consensus 79 V~V~id~ 85 (90)
T 3lyw_A 79 VTLQLEH 85 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999972
No 5
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51}
Probab=85.38 E-value=0.25 Score=27.07 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEHHHCCC------EEEECCCCCCCCCEEEEEEEECCCCCEECCCCC
Q ss_conf 963699605654432123113576545788880767963------468322223569779999753588867836898
Q gi|254780418|r 107 HVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPD------SITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLN 178 (191)
Q Consensus 107 ~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~p~~IPe------~ievDvs~L~~Gd~i~v~Dl~lpegv~~l~d~~ 178 (191)
+|||.+.|. +.|...-+..+ .-+|.+++..+.|-. ...+|++++..|..-.-=.+.+|+|++++.-+.
T Consensus 6 ~VPI~v~Nl--p~~l~v~~~~~--tV~V~v~G~~~~l~~l~~~di~~~vDls~l~~G~~~v~v~v~lP~gv~vv~i~~ 79 (98)
T 2kps_A 6 DLPIVLRNL--PEDLVLEKPLP--EVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPD 79 (98)
T ss_dssp GSCCEECSC--CTTEEESCCCC--CCCCCCCCCHHHHHTCCTTTSBCEECCTTCCSSCEEEECCCBCSSCCCCCCCCE
T ss_pred ECCEEEEEC--CCCEEEECCCC--EEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCC
T ss_conf 638999968--99809986798--799999986899510770028999997676776189989997899759997598
No 6
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=63.63 E-value=3.1 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=19.5
Q ss_pred EEEEEEEECCCCCEECCCCCCEEEEEECC
Q ss_conf 79999753588867836898269999448
Q gi|254780418|r 159 SIHMEDIRLPEKTSSMSQLNITIATIVAP 187 (191)
Q Consensus 159 ~i~v~Dl~lpegv~~l~d~~~~vvsv~~P 187 (191)
.++.+||.+|.+++++ +++..||+++.+
T Consensus 109 ~vtA~di~~p~~ieiv-Npdq~IaTlt~~ 136 (235)
T 1bdf_A 109 PVTAADITHDGDVEIV-KPQHVICHLTDE 136 (235)
T ss_dssp EEEGGGBCCCSSCEES-CTTCEEEEECST
T ss_pred CEEEECCCCCCCEEEE-CCCEEEEEECCC
T ss_conf 3897156678987996-899899997678
No 7
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=42.82 E-value=3.4 Score=20.01 Aligned_cols=76 Identities=13% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHCCCCCE-EE--ECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEE
Q ss_conf 876177899997899438-99--678988556999800221001114662257996167752037861212143268465
Q gi|254780418|r 15 KVGKGSARLLRKNGQIPA-II--YGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLDPVSDILI 91 (191)
Q Consensus 15 ~~gk~~~r~lR~~G~VPa-vi--YG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i~g~~~~vlikevQ~~p~~~~i~ 91 (191)
..|+.-++.|.+...=|| ++ +|.-.- .+-.|.|.+-+.-+... .+. .....++++.+ +-...+.
T Consensus 16 ~lg~~la~~l~~~~~~~g~ii~L~G~LGa------GKTtf~r~i~~~lg~~~----~V~-SPTF~l~~~Y~--~~~~~i~ 82 (158)
T 1htw_A 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGA------GKTTLTRGMLQGIGHQG----NVK-SPTYTLVEEYN--IAGKMIY 82 (158)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEECSTTS------SHHHHHHHHHHHTTCCS----CCC-CCTTTCEEEEE--ETTEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCC------CHHHHHHHHHHHHCCCC----CCC-CCCEEEEHHHH--CCCCCEE
T ss_conf 99999999987516899849999889868------89999999999827666----678-98334100330--6899569
Q ss_pred EEEEEEECCCCE
Q ss_conf 448999328976
Q gi|254780418|r 92 HADFLQVSEGST 103 (191)
Q Consensus 92 HvDF~~v~~~~~ 103 (191)
|+||||+...+.
T Consensus 83 H~DlYRl~~~~e 94 (158)
T 1htw_A 83 HFDLYRLADPEE 94 (158)
T ss_dssp EEECTTCSCTTH
T ss_pred EEEHHCCCCHHH
T ss_conf 731302598889
No 8
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=38.40 E-value=18 Score=15.41 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=49.7
Q ss_pred CEEEE-EEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEHHHCC------C--EEEECCCCCCCCCE-EEEEEEECCCCC
Q ss_conf 76999-96369960565443212311357654578888076796------3--46832222356977-999975358886
Q gi|254780418|r 102 STVTV-HVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIP------D--SITVDLNDLKIGDS-IHMEDIRLPEKT 171 (191)
Q Consensus 102 ~~v~v-~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~p~~IP------e--~ievDvs~L~~Gd~-i~v~Dl~lpegv 171 (191)
...++ +|||....-+ .++.--+.=+ .-++++++....|. . .+.+|+|++..|.. +.+.--.+|.++
T Consensus 7 ~~~tl~~Vpv~v~~d~--~~y~V~~~P~--tV~V~l~Gp~s~i~~~~~s~~di~a~vDLs~l~~G~~~vpv~v~~~p~~v 82 (119)
T 2kq1_A 7 GNLSLGELELTVLYDE--ERYDIVEQTE--TVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVEHRGFPGDL 82 (119)
T ss_dssp EEEEEEEEEEEEECCT--TTCEEEECCC--EEEEEEEECHHHHHHHTTSCCCCEEEEECTTCCBEEEEEECEEESSCTTS
T ss_pred CCCEEEEEEEEEEECC--CCEEEECCCC--EEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCE
T ss_conf 8417987239999878--8659979997--89999998289942132676679999991028773699768986299867
Q ss_pred EECCCCCCEEEEEEC
Q ss_conf 783689826999944
Q gi|254780418|r 172 SSMSQLNITIATIVA 186 (191)
Q Consensus 172 ~~l~d~~~~vvsv~~ 186 (191)
.+--+|..+-+.+..
T Consensus 83 ~v~v~P~~v~V~id~ 97 (119)
T 2kq1_A 83 AVTVEPRMARVQLEE 97 (119)
T ss_dssp EEEESCCEEEEEEES
T ss_pred EEEECCCEEEEEEEE
T ss_conf 999878999999998
No 9
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=37.54 E-value=7.6 Score=17.79 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=24.9
Q ss_pred EEEEEEECCCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf 999999168761778999978994389967898
Q gi|254780418|r 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMS 39 (191)
Q Consensus 7 ~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~ 39 (191)
.+...+-...|-..+|.+|+.| +|++-||.+.
T Consensus 15 g~~v~p~~~~G~TDar~~~~~g-~p~~~fgP~~ 46 (88)
T 1q7l_B 15 NLTLEPEIMPAAGDNRYIRAVG-VPALGFSPMN 46 (88)
T ss_dssp TCCEEEEECCSCSHHHHHHHTT-CCEEEECCCC
T ss_pred CCCEEEEEECCCCCHHHHHHCC-CCCEEECCCC
T ss_conf 9981799856632059998748-9826878888
No 10
>1kvz_A RC-rnase4; antitumor, BULLFROG, cytotoxicity,ribonuclease, structure from molmol, hydrolase; NMR {Rana catesbeiana} SCOP: d.5.1.1
Probab=25.84 E-value=25 Score=14.54 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.2
Q ss_pred EEEEEEECCCCC
Q ss_conf 636996056544
Q gi|254780418|r 108 VPVRFINENKSP 119 (191)
Q Consensus 108 VPI~~~ge~~~~ 119 (191)
+||+|.|.+.||
T Consensus 96 ~PVHf~g~g~~p 107 (107)
T 1kvz_A 96 LPVHFAGVGICP 107 (107)
T ss_dssp EEEEEEEESSCC
T ss_pred CCEEEEEECCCC
T ss_conf 577860452597
Done!