HHSEARCH alignment of GI: 254780418 and SCOP domain: d1feua_

Alignment
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=347.47  Aligned_cols=178  Identities=26%  Similarity=0.487  Sum_probs=165.1

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECC-CCCCEEEEEEEEEC
Q ss_conf             69999999168761778999978994389967898855699980022100111466225799616-77520378612121
Q gi|254780418|r    5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDI-GKELVHVIPKDYQL   83 (191)
Q Consensus         5 ~~~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i-~g~~~~vlikevQ~   83 (191)
                      +++|+|+.|++.|++   +|||+|+||||+||++. +.+++++.++|.+++++.+ .++++.+++ +|+++.||+||+|+
T Consensus         2 ~~~l~a~~Re~~~~~---~LRr~G~VPaViYG~~~-~~~i~v~~~e~~k~~~~~~-~~~~i~l~~~dg~~~~vlikevQ~   76 (185)
T d1feua_           2 EYRLKAYYREGEKPS---ALRRAGKLPGLMYNRHL-NRKVYVDLVEFDKVFRQAS-IHHVIVLELPDGQSLPTLVRQVNL   76 (185)
T ss_dssp             EEEEECEECSSSCHH---HHHHTTEEEEEEECSSC-EEEEEEEHHHHHHHHHHHT-TTSEEEEECTTSCEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCCH---HHHHCCCCEEEEECCCC-CCCEEECCHHHHHHHHHHH-CCCEEEEEEECCHHHHHEEEEEEE
T ss_conf             289999993488826---79858995499978999-8377964368876752320-244389995064113311002573


Q ss_pred             CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEHHHCCCEEEECCCCCCCCCEEEEE
Q ss_conf             43268465448999328976999963699605654432123113576545788880767963468322223569779999
Q gi|254780418|r   84 DPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME  163 (191)
Q Consensus        84 ~p~~~~i~HvDF~~v~~~~~v~v~VPI~~~ge~~~~Gvk~GG~l~~~~~~i~v~~~p~~IPe~ievDvs~L~~Gd~i~v~  163 (191)
                      ||+++.++|+|||+++ +++++++|||+|+|+  |+|+|+||+|++.+++|+|+|+|.+||++|+||+|+|++||+++++
T Consensus        77 ~pv~~~i~HvDF~~v~-~~~v~v~VPv~~~G~--~~gvk~GG~l~~~~~~i~v~~~p~~IPe~i~VDvs~L~igd~i~v~  153 (185)
T d1feua_          77 DKRRRRPEHVDFFVLS-DEPVEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS  153 (185)
T ss_dssp             CSSSSCEEEEEEEECC-SSCEEEEEEEEEESC--CHHHHTTCEEEECCSEEEEEECGGGCCSCEEEECTTCCTTEEEEGG
T ss_pred             CCCCCCEEEEEEEECC-CCEEEEEECEEEEEC--CCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEE
T ss_conf             5320303577886146-723899933388612--3431135179998726677860007871999972037799868988


Q ss_pred             EEECCCCCEECCCCCCEEEEEECCCCC
Q ss_conf             753588867836898269999448877
Q gi|254780418|r  164 DIRLPEKTSSMSQLNITIATIVAPISG  190 (191)
Q Consensus       164 Dl~lpegv~~l~d~~~~vvsv~~P~~g  190 (191)
                      ||++|+|+++++|++.+||+|.+|++-
T Consensus       154 Dl~lp~gv~~~~d~~~~vv~v~~p~~~  180 (185)
T d1feua_         154 DLKLPPGVELAVSPEETIAAVVPPEDV  180 (185)
T ss_dssp             GSCCCTTCEESSCTTCEEEEEECSSSS
T ss_pred             EECCCCCCEECCCCCCEEEEEECCCCC
T ss_conf             223899958904899769999589853


SCOP domain information

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein TL5 (general stress protein CTC)
species: Thermus thermophilus [TaxId: 274]