PSIBLAST alignment of GI: 254780418 and protein with PDB id: 1nkw
gi|28948939|pdb|1NKW|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 253
>gi|51247392|pdb|1SM1|T Chain T, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Quinupristin And Dalfopristin Length = 253
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 2 DQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFM 61
D +L+A R K I A+ Y N + AL K + ++
Sbjct: 13 DTATMELTAKPRTPKQKLD------ESMIAAVAY-NKENNVSFALDRKAFDRAFRQQSTT 65
Query: 62 TTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGI 121
G E + K Q+D IH DF V+ G V V VPV +S G
Sbjct: 66 GLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTT--GRSQGE 123
Query: 122 KQGGKLNVVCHEVSLLCP-ANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT 180
QGG +++V H + ++ P IP + VD+ + IGD I DI+LPE + + +T
Sbjct: 124 VQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELT 183
Query: 181 IATIVAPI 188
+ +++ P
Sbjct: 184 VVSVLPPR 191