PSIBLAST alignment of GI: 254780418 and protein with PDB id: 1pnu
>gi|34811573|pdb|1PNU|T Chain T, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 173
>gi|34811626|pdb|1PNY|T Chain T, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx. Length = 173
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 10/182 (5%)
Query: 6 CKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTIL 65
+L+A R K I A+ Y N + AL K + ++
Sbjct: 1 MELTAKPRTPKQKLD------ESMIAAVAY-NKENNVSFALDRKAFDRAFRQQSTTGLFD 53
Query: 66 TLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGG 125
G E + K Q+D IH DF V+ G V V VPV +S G QGG
Sbjct: 54 ITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTT--GRSQGEVQGG 111
Query: 126 KLNVVCHEVSLLCP-ANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATI 184
+++V H + ++ P IP + VD+ + IGD I DI+LPE + + +T+ ++
Sbjct: 112 LVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSV 171
Query: 185 VA 186
+
Sbjct: 172 LP 173