RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein
L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str.
psy62]
(191 letters)
>gnl|CDD|144833 pfam01386, Ribosomal_L25p, Ribosomal L25p family. Ribosomal
protein L25 is an RNA binding protein, that binds 5S
rRNA. This family includes Ctc from B. subtilis, which
is induced by stress.
Length = 87
Score = 103 bits (260), Expect = 3e-23
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 8 LSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTL 67
L A R++ GKG++R LR+ G++PA+IYG +P I++ K++ K L + T++ L
Sbjct: 1 LKAEKREETGKGASRRLRREGKVPAVIYGKGKEPVSISVDEKELEK-LLREAGENTVIEL 59
Query: 68 DIGKELVHVIPKDYQLDPVSDILIHADF 95
I + +V+ KD Q PV D ++H DF
Sbjct: 60 KIDGKKENVLIKDVQRHPVKDKILHVDF 87
>gnl|CDD|88604 cd00495, Ribosomal_L25_TL5_CTC, Ribosomal_L25_TL5_CTC: Ribosomal
L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a
single-domain protein, homologous to the N-terminal
domain of TL5 and CTC, which each contain two domains.
CTC is a known stress protein, and proteins of this
family are believed to have two functions, acting as
both ribosomal and stress proteins. In Escherichia
coli, cells deleted for L25 were found to be viable;
however, these cells grew slowly and had impaired
protein synthesis capability. In Bacillus subtilis, CTC
is induced under stress conditions and located in the
ribosome; it has been proposed that CTC may be
necessary for accurate translation under stress
conditions. Ribosomal_L25_TL5_CTC is found only in
bacteria and some plastids. Due to its limited
taxonomic diversity and the viability of cells deleted
for L25, this protein is not believed to be necessary
for ribosomal assembly. Eukaryotes contain a protein
called L25, which is not homologous to bacterial L25,
but rather to bacterial L23..
Length = 91
Score = 95.6 bits (238), Expect = 7e-21
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66
L A R++ GKG++R LR+ G++PA+IYG +P I++ K++ K L + +T++
Sbjct: 2 TLKAEKREETGKGASRRLRRAGKVPAVIYGKGKEPISISVDEKELEKLLRKEGR-STLIE 60
Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQ 97
L+I + +V+ KD Q PV D ++H DFL+
Sbjct: 61 LNIDGKKENVLIKDVQRHPVKDKILHVDFLR 91
>gnl|CDD|32010 COG1825, RplY, Ribosomal protein L25 (general stress protein Ctc)
[Translation, ribosomal structure and biogenesis].
Length = 93
Score = 92.6 bits (230), Expect = 6e-20
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66
+L A +R GKG++R LR+ G+IPA++YG +P IAL + +K L K +T++T
Sbjct: 3 ELEAEVRTSQGKGASRRLRRAGKIPAVVYGGGKEPVNIALDHHEFAKALR-KLGYSTVIT 61
Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQV 98
L++ + + V+ KD Q P++D + H DFL+V
Sbjct: 62 LEVDGKEIKVLVKDVQRHPLTDEVQHIDFLRV 93
>gnl|CDD|32749 COG2925, SbcB, Exonuclease I [DNA replication, recombination, and
repair].
Length = 475
Score = 28.4 bits (63), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 40 DPKP-IALSAKDISKRLYSKNFMTTILTLDIGKELVHV 76
D P + L A + +RLY++ L + +LVH+
Sbjct: 267 DISPLLELDADTLRERLYTRKADLGEGELAVPVKLVHI 304
>gnl|CDD|107217 cd06461, M2_ACE, Peptidase family M2 Angiotensin converting enzyme
(ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent
dipeptidase that catalyzes the conversion of the
decapeptide angiotensin I to the potent vasopressor
ocatapeptide angiotensin II, by removing two C-terminal
amino acids. There are two forms of the enzyme in
humans, the ubiquitous somatic ACE and the
sperm-specific germinal ACE, both encoded by the same
gene through transcription from alternative promoters.
Somatic ACE has two tandem active sites with distinct
catalytic properties, whereas germinal ACE, the function
of which is largely unknown, has just a single active
site. Recently, an ACE homolog, ACE2, has been
identified in humans that differs from ACE; it
preferentially removes carboxy-terminal hydrophobic or
basic amino acids and appears to be important in cardiac
function. ACE homologs (also known as members of the M2
gluzincin family) have been found in a wide variety of
species, including those that neither have a
cardiovascular system nor synthesize angiotensin. ACE is
well-known as a key part of the renin-angiotensin system
that regulates blood pressure and ACE inhibitors are
important for the treatment of hypertension.
Length = 477
Score = 27.2 bits (61), Expect = 3.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 7 KLSAVMRDKV-GKGSARLLRKNGQIPAIIYGNM 38
+L A +R K+ K ++ ++G IPA + GNM
Sbjct: 117 QLHAYVRRKLRKKYGDDVVNRDGPIPAHLLGNM 149
>gnl|CDD|147630 pfam05555, DUF762, Coxiella burnetii protein of unknown function
(DUF762). This family consists several of several
uncharacterized proteins from the bacterium Coxiella
burnetii. Coxiella burnetii is the causative agent of
the Q fever disease.
Length = 247
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 112 FINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRL 167
FI E K I + G + C +V + P + + GD +++E I+L
Sbjct: 162 FIGEVKVSLISKDGDIIHACKKVEIAVPGAKL------NSFKKHFGDQLNVETIKL 211
>gnl|CDD|31123 COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General
function prediction only].
Length = 149
Score = 26.8 bits (59), Expect = 3.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 129 VVCHEVSLLCPANNIPDSITV 149
+V E LCP PD T+
Sbjct: 44 LVSPEFKSLCPITGQPDFATI 64
>gnl|CDD|39018 KOG3814, KOG3814, KOG3814, Signaling protein van gogh/strabismus
[Signal transduction mechanisms].
Length = 531
Score = 26.5 bits (58), Expect = 4.3
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 90 LIHADFLQ--VSEGSTVTVHVPVRFI-------NENKSPGIKQGGKLNVVCHEVSLLCPA 140
L FL+ +S G T +E S G++ G + H+VSL+
Sbjct: 442 LSPRAFLERYLSAGPTPQYEKERWLESQWSLICDEAVSNGLQDGIVFVLKSHDVSLVVTV 501
Query: 141 NNIP 144
IP
Sbjct: 502 KKIP 505
>gnl|CDD|176700 cd08352, Glo_EDI_BRP_like_1, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The proteins of this family share three
conserved metal binding amino acids with the type I
extradiol dioxygenases, which shows no domain swapping.
Length = 125
Score = 25.7 bits (57), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 44 IALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLD 84
+A+ D K SK F IL + +E+ Y+LD
Sbjct: 7 VAIICSDYEK---SKEFYVEILGFKVIREVYRPERGSYKLD 44
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,159,577
Number of extensions: 106927
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 14
Length of query: 191
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,362,145
Effective search space: 449300935
Effective search space used: 449300935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)