RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str. psy62] (191 letters) >1b75_A Protein (50S ribosomal protein L25); RNA-binding protein; NMR {Escherichia coli} (A:) Length = 94 Score = 107 bits (270), Expect = 8e-25 Identities = 28/92 (30%), Positives = 45/92 (48%) Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66 ++A +R + GKG++R LR + PAIIYG P I L + F + +LT Sbjct: 3 TINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62 Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQV 98 + + + + V +D Q P L H DF++ Sbjct: 63 IVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA 94 >2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (S:1-91) Length = 91 Score = 100 bits (250), Expect = 2e-22 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 1/90 (1%) Query: 12 MRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGK 71 M + + I A+ Y + AL K + ++ G Sbjct: 1 MELTAKPRTPKQKLDESMIAAVAYNK-ENNVSFALDRKAFDRAFRQQSTTGLFDITVEGG 59 Query: 72 ELVHVIPKDYQLDPVSDILIHADFLQVSEG 101 E + K Q+D IH DF V+ G Sbjct: 60 ETFPALVKAVQMDKRKRAPIHVDFYMVTYG 89 >1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} (A:94-206) Length = 113 Score = 98.3 bits (245), Expect = 6e-22 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163 V ++VP+RF+ G++ GG L + ++ + NIP+ I VD++ L+IGDS+H Sbjct: 3 VEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS 60 Query: 164 DIRLPEKTSSMSQLNITIATIVAP 187 D++LP TIA +V P Sbjct: 61 DLKLPPGVELAVSPEETIAAVVPP 84 >2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (S:92-237) Length = 146 Score = 97.9 bits (244), Expect = 7e-22 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPA-NNIPDSITVDLNDLKIGDSIHM 162 V V VPV S G QGG +++V H + ++ P IP + VD+ + IGD I Sbjct: 1 VEVSVPVHTTGR--SQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITA 58 Query: 163 EDIRLPEKTSSMSQLNITIATIVAP 187 DI+LPE + + +T+ +++ P Sbjct: 59 GDIKLPEGCTLAADPELTVVSVLPP 83 >1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} (A:1-93) Length = 93 Score = 95.9 bits (239), Expect = 3e-21 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64 E +L A R+ + LR+ G++P ++Y + + + + K + I Sbjct: 2 EYRLKAYYREGEKPSA---LRRAGKLPGLMYNR-HLNRKVYVDLVEFDKVFRQASIHHVI 57 Query: 65 LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSE 100 + + + + + LD H DF +S+ Sbjct: 58 VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSD 93 >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 110 Score = 28.4 bits (62), Expect = 0.61 Identities = 5/32 (15%), Positives = 12/32 (37%) Query: 101 GSTVTVHVPVRFINENKSPGIKQGGKLNVVCH 132 GS+ + F+ +++G + C Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCK 32 >3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV} (A:1-82,A:219-310) Length = 174 Score = 27.9 bits (62), Expect = 1.0 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%) Query: 72 ELVHVIPKDYQLDPVSDILIHADFLQVS------EGSTVTVHVP 109 + V + DY ++ V L ++ V VH P Sbjct: 122 DKVAIAAVDYGVEAVEGELXFTGREELILRREDNRAGVVHVHFP 165 >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} (B:1-219) Length = 219 Score = 27.0 bits (57), Expect = 1.5 Identities = 4/30 (13%), Positives = 8/30 (26%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132 VP + + G + + C Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCP 31 >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} (A:179-363) Length = 185 Score = 26.9 bits (58), Expect = 1.8 Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 10/89 (11%) Query: 96 LQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPD-SITVDLNDL 154 + EG V P+ F E + + +++ + + ++ Sbjct: 8 VYKKEGEQVEFSFPLAFTVEKLTGSGE---------LWWQAERASSSKSWITFDLKNKEV 58 Query: 155 KIGDSIHMEDIRLPEKTSSMSQLNITIAT 183 + +++ +K L + Sbjct: 59 SVKRVTQDPKLQMGKKLPLHLTLPQALPQ 87 >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} (A:1-106) Length = 106 Score = 26.8 bits (58), Expect = 1.9 Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 7/77 (9%) Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163 + + P +K V L C ++ + + + + + Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEE-------TVILQCWSDVMFEHFLLHREGMFNDTLRLIG 54 Query: 164 DIRLPEKTSSMSQLNIT 180 + ++ S +T Sbjct: 55 EHHDGVSKANFSISRMT 71 >1im9_D Killer cell immunoglobulin-like receptor 2DL1; protein-protein complex, immunoglobulin domain, antiparallel beta sheet, alpha helix, immune system; 2.80A {Homo sapiens} (D:1-106) Length = 106 Score = 26.8 bits (58), Expect = 1.9 Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 7/77 (9%) Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163 + + P +K V L C ++ + + + + + Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEE-------TVILQCWSDVMFEHFLLHREGMFNDTLRLIG 54 Query: 164 DIRLPEKTSSMSQLNIT 180 + ++ S +T Sbjct: 55 EHHDGVSKANFSISRMT 71 >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} (A:1-104) Length = 104 Score = 26.7 bits (58), Expect = 2.4 Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 7/78 (8%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHM 162 P+ FI+ SP I G V + C A + + I Sbjct: 2 AQEGDFPMPFISAKSSPVIPLDGS-------VKIQCQAIREAYLTQLMIIKNSTYREIGR 54 Query: 163 EDIRLPEKTSSMSQLNIT 180 E ++ Sbjct: 55 RLKFWNETDPEFVIDHMD 72 >2dl9_A Leucine-rich repeat-containing protein 4; IG-like domain, brain tumor associated protein LRRC4, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 103 Score = 25.8 bits (56), Expect = 4.1 Identities = 3/29 (10%), Positives = 9/29 (31%) Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCH 132 + ++ + I +G + C Sbjct: 2 SSGSSGPFIMDAPRDLNISEGRMAELKCR 30 >1gr0_A MYO-inositol-1-phosphate synthase; oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB, TBSGC; HET: NAD; 1.95A {Mycobacterium tuberculosis} (A:202-312) Length = 111 Score = 25.5 bits (56), Expect = 4.6 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 37 NMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDY 81 NM + + L +K ISK +T+ L + + VH+ P D+ Sbjct: 37 NMLERE--RLESKKISK----TQAVTSNLKREFKTKDVHIGPSDH 75 >2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:69-192) Length = 124 Score = 25.1 bits (55), Expect = 6.1 Identities = 8/25 (32%), Positives = 12/25 (48%) Query: 45 ALSAKDISKRLYSKNFMTTILTLDI 69 AL A + Y+K F+ +LT Sbjct: 43 ALKAHGLEDXAYAKAFIRKVLTEGA 67 >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} (A:110-218) Length = 109 Score = 24.8 bits (53), Expect = 7.4 Identities = 5/30 (16%), Positives = 9/30 (30%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132 ++ E S + G L + C Sbjct: 3 DGVSESKLQICVEPTSQKLMPGSTLVLQCV 32 >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} (A:) Length = 108 Score = 24.8 bits (53), Expect = 7.4 Identities = 6/30 (20%), Positives = 9/30 (30%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132 TV V ++ G + V C Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCT 33 >1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} (A:12-61) Length = 50 Score = 24.8 bits (54), Expect = 7.5 Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 133 EVSLLCPANNIPDSITVD 150 E+S++C + IP + VD Sbjct: 31 ELSIVCLIDRIPQDVRVD 48 >2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-binding, oxidative stress, antioxidant; 1.70A {Homo sapiens} (A:) Length = 222 Score = 24.7 bits (53), Expect = 8.2 Identities = 2/27 (7%), Positives = 8/27 (29%) Query: 95 FLQVSEGSTVTVHVPVRFINENKSPGI 121 F Q++ + + + + Sbjct: 66 FRQLAPRAKLDAFFALEGFPTEPNSSS 92 >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 100 Score = 24.8 bits (53), Expect = 8.5 Identities = 3/30 (10%), Positives = 8/30 (26%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132 + P + + + G + C Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCK 31 >3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} (A:1-344) Length = 344 Score = 24.6 bits (54), Expect = 8.7 Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 139 PANNIPDSITVDLNDLKIGDSIHME 163 P N ++ TVDLND + D H+ Sbjct: 223 PVNLAYEAATVDLNDANVIDHFHLA 247 >1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:256-337,A:383-437) Length = 137 Score = 24.5 bits (53), Expect = 9.1 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 13/50 (26%) Query: 41 PKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLDPVSDIL 90 P+ + + + K + + T + + K D V D L Sbjct: 2 KHPLEIEPERLRKIVEERG--TAVFAVKFRKP-----------DIVDDNL 38 >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein, membrane protein; HET: NAG MAN; 2.70A {Homo sapiens} (A:376-477) Length = 102 Score = 24.4 bits (52), Expect = 9.9 Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 7/78 (8%) Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHM 162 T + + + +G H V +C A+ P + L+ K S Sbjct: 4 YFTCRRARIRDRKAQQVFVDEG-------HTVQFVCRADGDPPPAILWLSPRKHLVSAKS 56 Query: 163 EDIRLPEKTSSMSQLNIT 180 ++ Sbjct: 57 NGRLTVFPDGTLEVRYAQ 74 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.135 0.379 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,364,501 Number of extensions: 58474 Number of successful extensions: 214 Number of sequences better than 10.0: 1 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 30 Length of query: 191 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 107 Effective length of database: 2,116,429 Effective search space: 226457903 Effective search space used: 226457903 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.4 bits)