HHsearch alignment for GI: 254780419 and conserved domain: COG0017
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=712.25 Aligned_cols=408 Identities=30% Similarity=0.512 Sum_probs=334.5
Q ss_pred CCCCCHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCC---CHHHHHHHCCCCCCEEEEEEEEEEC
Q ss_conf 7742042369799898899997980044469879999977982599997488---1578998528988589999999975
Q gi|254780419|r 4 YRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPD---SACFEIAKSVRSEWVLCIDGLVMSR 80 (622)
Q Consensus 4 ~Rth~cg~l~~~~~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~---~~~~~~~~~l~~esvv~v~G~V~~r 80 (622)
T Consensus 2 ~~~~~i~di~~~~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~G~v~~~ 80 (435)
T COG0017 2 MKRTYIKDIKPHVGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGFIQAVVPKNKVYEELFK-AKKLTLESSVVVTGIVKAS 80 (435)
T ss_pred CCEEEHHHHHCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCHHHHH-HHCCCCCCEEEEEEEEECC
T ss_conf 735437765044798579999887550015870899997588379999977877176766-6317876589999999748
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 86555887778659999889999502117998645766789878211232000121111212458999999987520365
Q gi|254780419|r 81 SAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAEN 160 (622)
Q Consensus 81 ~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdLR~~~~~~~l~~Rs~i~~~~R~~l~~~g 160 (622)
T Consensus 81 ~------~a~-~g~El~v~~i~Vl~~a~~-~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~g 152 (435)
T COG0017 81 P------KAP-QGFELQVEKIEVLGEADP-PYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENG 152 (435)
T ss_pred C------CCC-CCEEEEEEEEEEEECCCC-CCCCCCCCCCCHHHHHHCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8------999-877998878899404688-77768645557888874403020462037789499999999999997589
Q ss_pred EEEEECCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 1462033211246456645-432222210344311238545644331057023311001103777665538000035654
Q gi|254780419|r 161 FIECSTPILTASSPEGARD-FLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDM 239 (622)
Q Consensus 161 F~EveTP~L~ksTpeGArd-FlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd~R~dRqp~EFTqlD~ 239 (622)
T Consensus 153 F~eV~tP~i~~~~~EGg~elF~v--~yf~~~a~-LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~ 228 (435)
T COG0017 153 FTEVHTPIITASATEGGGELFKV--DYFDKEAY-LTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228 (435)
T ss_pred CEEECCCEEECCCCCCCCEEEEE--EECCCCEE-EECCHHHHHHHHHHH-HCCEEEECCCEECCCCCCCCHHHHHHEECC
T ss_conf 58965946853478998505777--50685667-714788999999998-576489567255477897003666733021
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCC------------CCC----CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1026899999999999999999998087------------234----577321218988751367776444764012443
Q gi|254780419|r 240 EMSFVEQDDILNTMENVLRGVFEEFSNG------------NTV----SNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVT 303 (622)
Q Consensus 240 EmsF~~~edvm~l~E~li~~i~~~v~~~------------~~i----~~pF~rmtY~eAm~~YGsDKPDLR~~lei~dit 303 (622)
T Consensus 229 Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~--------------- 293 (435)
T COG0017 229 EMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEE--------------- 293 (435)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEHHHHHHHHHH---------------
T ss_conf 11367688899999999999999999971898887614611103444689637779999999986---------------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHH
Q ss_conf 10178752456668740378479999627876652103567799987642024623552047775333570255325278
Q gi|254780419|r 304 EHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVN 383 (622)
Q Consensus 304 ~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~ 383 (622)
T Consensus 294 --------------------------------------------------~~~e~~~~Gd--------------Dl~~e~ 309 (435)
T COG0017 294 --------------------------------------------------KGFEKVEWGD--------------DLGTEH 309 (435)
T ss_pred --------------------------------------------------CCCCCCCCCC--------------CCCCHH
T ss_conf --------------------------------------------------4776567777--------------568899
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEE-EEEEEECCCEEECCCCCCCCHHHCCCCCC
Q ss_conf 99999981887557269980885411001347889998773003557510-28896077053545547000211002476
Q gi|254780419|r 384 TEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFE-FCWIMDFPFYEWNEEEKKIDFAHNPFTMP 462 (622)
Q Consensus 384 ~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~-flWV~DFPLFe~dee~~r~~s~HHPFTaP 462 (622)
T Consensus 310 Er~l~---------------------------------e~-------~~~~~vfv~~yP~------~~------kpFYm~ 337 (435)
T COG0017 310 ERYLG---------------------------------EE-------YFKPPVFVTNYPK------EI------KPFYMR 337 (435)
T ss_pred HHHHH---------------------------------HH-------HCCCCEEEEECCC------CC------CCCCCC
T ss_conf 99999---------------------------------87-------5799499981764------44------665033
Q ss_pred CCCHHHHHCCCHHHHHHHCCCEEECC-EEECCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 64306554188777413136777756-77212512315699999999985999899986677899998608497342224
Q gi|254780419|r 463 QGGMESLKGNDLLSIKAFQYDLVCNG-FEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAA 541 (622)
Q Consensus 463 ~~~~~~l~~~dp~~v~a~~YDLVlNG-~EiggGSiRIHd~~iQ~~~f~~lgl~~ee~~~~Fg~lL~Al~yG~PPHgG~al 541 (622)
T Consensus 338 ~~~d------~p~--~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~----~~wYld~~kyG~~PHaGfGl 405 (435)
T COG0017 338 PDPD------NPG--TVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPES----YEWYLDLRKYGMPPHAGFGL 405 (435)
T ss_pred CCCC------CCC--EEEEEEEECCCCEEEECCEECCCCHHHHHHHHHHCCCCHHH----HHHHHHHHHCCCCCCCCCCC
T ss_conf 3799------887--69987652478705603623043099999999980999688----18999998738999860033
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 68999999837398403213789998
Q gi|254780419|r 542 GIDRIVMLLLGAKNVREVSLFPMSQN 567 (622)
Q Consensus 542 GlDRlvmll~g~~sIRdVIaFPKt~~ 567 (622)
T Consensus 406 G~ERlv~~i~gl~nIRea~pFPR~~~ 431 (435)
T COG0017 406 GLERLVMYILGLDNIREAIPFPRDPG 431 (435)
T ss_pred CHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 79999999948883201244777778