HHsearch alignment for GI: 254780419 and conserved domain: COG0172
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=95.84 E-value=0.061 Score=33.37 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=72.0
Q ss_pred HHHHHHHHHHH----HCCCEEEEECCCCCCCCC-CCCC----------------CCCCCCCCCHHHHHHCCCCHHHHHHH
Q ss_conf 99999998752----036514620332112464-5664----------------54322222103443112385456443
Q gi|254780419|r 146 TRIINSMRCRM----IAENFIECSTPILTASSP-EGAR----------------DFLVPSRVNQGSFYALPQAPQQYKQL 204 (622)
Q Consensus 146 s~i~~~~R~~l----~~~gF~EveTP~L~ksTp-eGAr----------------dFlVPsR~~~g~fYALpQSPQlyKQl 204 (622)
T Consensus 174 a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl--~~l-----~~~Ei 246 (429)
T COG0172 174 ARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPL--TNL-----HRDEI 246 (429)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCEEECHHHHHCCCCCCCCCCCCEEECCCCEEEEECCHHHH--HHH-----HCCCC
T ss_conf 99999999999999987696586576060598862237898880121584589879970202156--786-----51620
Q ss_pred HHCCCH-HHHEEEHHHHCCCCCC------C-CCCCCCEEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 310570-2331100110377766------5-53800003565410-2689999999999999999999808723457732
Q gi|254780419|r 205 LMASGF-DRYFQIAPCFRDEDPR------S-DRLPGEFYQLDMEM-SFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFL 275 (622)
Q Consensus 205 Lmv~G~-dryfqiarcFRdEd~R------~-dRqp~EFTqlD~Em-sF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~ 275 (622)
T Consensus 247 l~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH-QF~KV--E~v~~~~Pe~S~~~~E~m~~~a-e~il~--~LeLPyR 320 (429)
T COG0172 247 LDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH-QFDKV--ELVVITKPEESEEELEEMLGNA-EEVLQ--ELELPYR 320 (429)
T ss_pred CCCCCCCEEEEEECHHHHCCCCCCCCCCCCEEEEE-EEEEE--EEEEEECCCHHHHHHHHHHHHH-HHHHH--HHCCCCE
T ss_conf 15212780267877254214565664355301466-43558--9999707011699999999999-99999--7089836
Q ss_pred CCCHHH
Q ss_conf 121898
Q gi|254780419|r 276 RICYDD 281 (622)
Q Consensus 276 rmtY~e 281 (622)
T Consensus 321 vv~lct 326 (429)
T COG0172 321 VVNLCT 326 (429)
T ss_pred EEEECC
T ss_conf 843256