HHsearch alignment for GI: 254780419 and conserved domain: COG0441
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.26 E-value=0.013 Score=38.07 Aligned_cols=138 Identities=23% Similarity=0.330 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCCCCC------CCCCCCCCHHHHHHC-----CCCHHHHHHHHHC
Q ss_conf 24589999999875203651462033211246---456645------432222210344311-----2385456443310
Q gi|254780419|r 142 IVKRTRIINSMRCRMIAENFIECSTPILTASS---PEGARD------FLVPSRVNQGSFYAL-----PQAPQQYKQLLMA 207 (622)
Q Consensus 142 l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksT---peGArd------FlVPsR~~~g~fYAL-----pQSPQlyKQlLmv 207 (622)
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~---~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD---DREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCHHCCCHHHCCCCCEEECCC---CHHHEEEECCCHHHHHHHHCCCCC
T ss_conf 66999999999989875585271287363000010112045513660662137---723306410787689998537861
Q ss_pred CC--HHHHEEEHHHHCCCCCCCC----CCCCCEEEEEEEECCCCHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCCC
Q ss_conf 57--0233110011037776655----3800003565410268999999999999999---9999808723457732121
Q gi|254780419|r 208 SG--FDRYFQIAPCFRDEDPRSD----RLPGEFYQLDMEMSFVEQDDILNTMENVLRG---VFEEFSNGNTVSNNFLRIC 278 (622)
Q Consensus 208 ~G--~dryfqiarcFRdEd~R~d----Rqp~EFTqlD~EmsF~~~edvm~l~E~li~~---i~~~v~~~~~i~~pF~rmt 278 (622)
T Consensus 297 YR~LP~r~~E~g~v~R~E~SGal~GL~Rv-R~ftqdD~H-ifc~~dQi~~E~~~~~~~i~~v~~~fg----~~~y~~~ls 370 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKSGALHGLMRV-RGFTQDDAH-IFCTPDQIKDEFKGILELILEVYKDFG----FTDYEVKLS 370 (589)
T ss_pred EECCCHHHHHCCEEECCCCCCHHHCCCCC-CCEEECCCC-EECCHHHHHHHHHHHHHHHHHHHHHCC----CCEEEEEEE
T ss_conf 10044043314422115676422224001-132245620-140467889999999999999998469----753799996
Q ss_pred HHHHHHHCCCCC
Q ss_conf 898875136777
Q gi|254780419|r 279 YDDAIRRYGTDK 290 (622)
Q Consensus 279 Y~eAm~~YGsDK 290 (622)
T Consensus 371 ~r~--k~ig~d~ 380 (589)
T COG0441 371 TRP--KFIGSDE 380 (589)
T ss_pred CCC--CCCCCHH
T ss_conf 477--6468735