HHsearch alignment for GI: 254780419 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=97.45 E-value=0.00038 Score=49.16 Aligned_cols=115 Identities=24% Similarity=0.328 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-------------------CCCCCCCCCC-CCCCCHHHHHHCC-CCHH
Q ss_conf 12458999999987520365146203321124-------------------6456645432-2222103443112-3854
Q gi|254780419|r 141 NIVKRTRIINSMRCRMIAENFIECSTPILTAS-------------------SPEGARDFLV-PSRVNQGSFYALP-QAPQ 199 (622)
Q Consensus 141 ~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ks-------------------TpeGArdFlV-PsR~~~g~fYALp-QSPQ 199 (622)
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PT--sEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPT--SEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECHHCCHHHHHHHHCHHHCCCHHHEEEECCCCCEEEECCC--CHHHHHHHHHHHHH
T ss_conf 8999999999999999860850883110587899987485630364448997169963435788--68999999999865
Q ss_pred HHHHHHHCCCHHHHEEEHHHHCCCCCCCC----CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56443310570233110011037776655----3800003565410268999999999999999999980
Q gi|254780419|r 200 QYKQLLMASGFDRYFQIAPCFRDEDPRSD----RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFS 265 (622)
Q Consensus 200 lyKQlLmv~G~dryfqiarcFRdEd~R~d----Rqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~ 265 (622)
T Consensus 124 SYkdLPl-----~lYQi~~kfRdE~-rpr~gllR~-REF~mkdaySfh~~~e~a~~~y~~~~~-~Y~~if 185 (500)
T COG0442 124 SYKDLPL-----KLYQIQSKFRDEK-RPRFGLLRG-REFLMKDAYSFHADEEDAEETYEKMLD-AYSRIF 185 (500)
T ss_pred HHHHCCC-----CEEEEEEEEECCC-CCCCCCCCH-HEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHH
T ss_conf 5651881-----2101345884334-688773000-203301112102898999999999999-999999