HHsearch alignment for GI: 254780419 and conserved domain: COG1107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=96.93 E-value=0.0017 Score=44.46 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=64.9
Q ss_pred CHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 04236979989889999798004446987999997798259999748815789985289885899999999758655588
Q gi|254780419|r 8 SCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINA 87 (622)
Q Consensus 8 ~cg~l~~~~~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~ 87 (622)
T Consensus 204 ~i~did~-~ig~tV~I~GeV~qikqT~GPTVFtltDetg~i~aAAFe~aGv-RAyP~ievGdiV~ViG~V~~r~------ 275 (715)
T COG1107 204 LIDDLDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGAIWAAAFEEAGV-RAYPEIEVGDIVEVIGEVTRRD------ 275 (715)
T ss_pred CHHHHHH-HCCCEEEEEEEEEEEEECCCCEEEEEECCCCCEEHHHHCCCCC-CCCCCCCCCCEEEEEEEEEECC------
T ss_conf 0777775-3486699977899999758987999806888442666435774-3489987785699987775047------
Q ss_pred CCCCCEEEEEEEEEEEEE
Q ss_conf 777865999988999950
Q gi|254780419|r 88 NIITGQIELSAQKIEILS 105 (622)
Q Consensus 88 ~~~tG~~Ei~~~~~~il~ 105 (622)
T Consensus 276 ----g~lQiE~~~me~L~ 289 (715)
T COG1107 276 ----GRLQIEIEAMEKLT 289 (715)
T ss_pred ----CCEEEEEHHHHHHH
T ss_conf ----82787624357751