HHsearch alignment for GI: 254780419 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=599.51 Aligned_cols=422 Identities=27% Similarity=0.448 Sum_probs=334.4
Q ss_pred CCCCHHHCCHHHCCC----------EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHHH-HHHCCCCCCE
Q ss_conf 742042369799898----------8999979800444698799999779825999974881---5789-9852898858
Q gi|254780419|r 5 RTHSCGDLGVSDVGS----------FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACFE-IAKSVRSEWV 70 (622)
Q Consensus 5 Rth~cg~l~~~~~g~----------~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~~-~~~~l~~esv 70 (622)
T Consensus 38 ~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDi 117 (502)
T COG1190 38 RTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDI 117 (502)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHCCCEEEEECCEEEECCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCE
T ss_conf 64549999999753240233200550588432663202575258999408963899995465464668888632665788
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE-CCCCCCCCHHHHHHHH
Q ss_conf 999999997586555887778659999889999502117998645766789878211232000-1211112124589999
Q gi|254780419|r 71 LCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL-RRDTLHKNIVKRTRII 149 (622)
Q Consensus 71 v~v~G~V~~r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL-R~~~~~~~l~~Rs~i~ 149 (622)
T Consensus 118 igv~G~~~~---------T~~GelSv~v~~~~lLsKsL~-pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii 187 (502)
T COG1190 118 IGVEGPLFK---------TKTGELSVSVEELRLLSKSLR-PLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKII 187 (502)
T ss_pred EEEEEEEEE---------CCCCCEEEEEEEEEEECCCCC-CCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 866420565---------489846899877756202077-7974543786388899988889865999999999999999
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHH----HHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCC
Q ss_conf 999875203651462033211246456--6454322222103----4431123854564433105702331100110377
Q gi|254780419|r 150 NSMRCRMIAENFIECSTPILTASSPEG--ARDFLVPSRVNQG----SFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDE 223 (622)
Q Consensus 150 ~~~R~~l~~~gF~EveTP~L~ksTpeG--ArdFlVPsR~~~g----~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdE 223 (622)
T Consensus 188 ~~iR~fl~~~gFlEVETP~lq-~i~GGA~ArPF~----ThhNald~dly-LRIApELyLKRliVGG~erVfEIgr~FRNE 261 (502)
T COG1190 188 RAIREFLDDRGFLEVETPMLQ-PIPGGAAARPFI----THHNALDMDLY-LRIAPELYLKRLIVGGFERVFEIGRNFRNE 261 (502)
T ss_pred HHHHHHHHHCCCEEECCCCCC-CCCCCCCCCCCE----EEECCCCCCEE-EEECCHHHHHHHHHCCCHHHEEECCCCCCC
T ss_conf 999999987797584160003-557873226501----22023677568-762418999988753721422305520037
Q ss_pred CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC---------CCCCCCCCCCCHHHHHHHCCC-CCCCC
Q ss_conf 76655380000356541026899999999999999999998087---------234577321218988751367-77644
Q gi|254780419|r 224 DPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNG---------NTVSNNFLRICYDDAIRRYGT-DKPDL 293 (622)
Q Consensus 224 d~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~---------~~i~~pF~rmtY~eAm~~YGs-DKPDL 293 (622)
T Consensus 262 Gid~tHNP-EFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~--- 337 (502)
T COG1190 262 GIDTTHNP-EFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDF--- 337 (502)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCEEEEEHHHHHHHHHCCCC---
T ss_conf 87666484-23568999998579999999999999999995497378789976754897225664899998718665---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 47640124431017875245666874037847999962787665210356779998764202462355204777533357
Q gi|254780419|r 294 RNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMG 373 (622)
Q Consensus 294 R~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~s 373 (622)
T Consensus 338 ------~~~------------------------------------~~~e~~~~~ak~~~i~~~~---------------- 359 (502)
T COG1190 338 ------DDL------------------------------------FDDEEAKELAKKHGIEVEK---------------- 359 (502)
T ss_pred ------CCC------------------------------------CCHHHHHHHHHHCCCCCCC----------------
T ss_conf ------545------------------------------------8879999999980897576----------------
Q ss_pred CHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCC
Q ss_conf 02553252789999998188755726998088541100134788999877300355751028896077053545547000
Q gi|254780419|r 374 PVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKID 453 (622)
Q Consensus 374 pi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~ 453 (622)
T Consensus 360 --------------------------------~~-~-~~~g~ll~~lFe~--~vE~~liqPTFv~d~P~-----eiS--- 395 (502)
T COG1190 360 --------------------------------YG-T-WGLGHLLNELFEE--LVEAKLIQPTFVTDHPV-----EIS--- 395 (502)
T ss_pred --------------------------------CC-C-CCHHHHHHHHHHH--HHHHHHCCCCEEECCCC-----CCC---
T ss_conf --------------------------------55-5-3678999999987--76564148824616854-----368---
Q ss_pred HHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHH------CCCCHH-HHHHHHHHHH
Q ss_conf 211002476643065541887774131367777567721251231569999999998------599989-9986677899
Q gi|254780419|r 454 FAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSN------VGISKE-VVENRFGGLY 526 (622)
Q Consensus 454 s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~------lgl~~e-e~~~~Fg~lL 526 (622)
T Consensus 396 ----PLak~~~~-------~p~--~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Ded---fv 459 (502)
T COG1190 396 ----PLAKRHRS-------NPG--LTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDED---FV 459 (502)
T ss_pred ----CCCCCCCC-------CCC--HHHHHEEEECCEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HH
T ss_conf ----66567988-------865--132210135458763112220699999999999999987299300115799---99
Q ss_pred HHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 99860849734222468999999837398403213789
Q gi|254780419|r 527 RAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPM 564 (622)
Q Consensus 527 ~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPK 564 (622)
T Consensus 460 ~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~ 497 (502)
T COG1190 460 EALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPA 497 (502)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHEECCCC
T ss_conf 99866999988751257777777739985542221565