HHsearch alignment for GI: 254780419 and conserved domain: COG2269

>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=1e-34  Score=267.87  Aligned_cols=291  Identities=25%  Similarity=0.390  Sum_probs=200.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------CCCCCCCCCCCHHHHHHCCCCHHHH-HHHHHCCCHHH
Q ss_conf             2124589999999875203651462033211246456------6454322222103443112385456-44331057023
Q gi|254780419|r  140 KNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEG------ARDFLVPSRVNQGSFYALPQAPQQY-KQLLMASGFDR  212 (622)
Q Consensus       140 ~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeG------ArdFlVPsR~~~g~fYALpQSPQly-KQlLmv~G~dr  212 (622)
T Consensus        14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~-L~TSPEy~mKrLL-Aag~~~   91 (322)
T COG2269          14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLW-LHTSPEYHMKRLL-AAGSGP   91 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEE-EECCCHHHHHHHH-HCCCCC
T ss_conf             99998999999999999876925853367650789864234456676546766653036-6568077789999-754886


Q ss_pred             HEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCCCC
Q ss_conf             31100110377766553800003565410268999999999999999999980872345773212189887513-67776
Q gi|254780419|r  213 YFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRY-GTDKP  291 (622)
Q Consensus       213 yfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~Y-GsDKP  291 (622)
T Consensus        92 ifql~kvfRN~E-~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~--------~~E~ls~~eaF~r~~gid~l  162 (322)
T COG2269          92 IFQLGKVFRNEE-MGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV--------EAERLSYQEAFLRYLGIDPL  162 (322)
T ss_pred             CHHHHHHHHCCC-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC--------CCCEEEHHHHHHHHHCCCCC
T ss_conf             014547772633-256679843676510067859999999999999997037--------85355599999998388945


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             44476401244310178752456668740378479999627876652103567799987642024623552047775333
Q gi|254780419|r  292 DLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAG  371 (622)
Q Consensus       292 DLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~  371 (622)
T Consensus       163 ~----------------~~------------------------------~~~L~~~~~~~---~l~---~--~-------  181 (322)
T COG2269         163 S----------------AD------------------------------KTELREAAAKL---GLS---A--A-------  181 (322)
T ss_pred             C----------------CC------------------------------HHHHHHHHHHC---CCC---C--C-------
T ss_conf             2----------------42------------------------------99999999855---877---7--7-------


Q ss_pred             CCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCEEECCCC
Q ss_conf             5702553252789999998188755726998088541100134788999877300355--75102889607705354554
Q gi|254780419|r  372 MGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINC--NCFEFCWIMDFPFYEWNEEE  449 (622)
Q Consensus       372 ~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~--~~~~flWV~DFPLFe~dee~  449 (622)
T Consensus       182 --------~~~~~d~L~~~lf-------------------------~~------~VEP~lg~~rpt~ly~fP~------~  216 (322)
T COG2269         182 --------TDEDWDTLLQLLF-------------------------VE------GVEPNLGKERPTFLYHFPA------S  216 (322)
T ss_pred             --------CCCCHHHHHHHHH-------------------------HH------HCCCCCCCCCCEEEEECCH------H
T ss_conf             --------7558999999988-------------------------86------4075668888448872727------7


Q ss_pred             CCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHH-------CCCCHHHHHHHH
Q ss_conf             7000211002476643065541887774131367777567721251231569999999998-------599989998667
Q gi|254780419|r  450 KKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSN-------VGISKEVVENRF  522 (622)
Q Consensus       450 ~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~-------lgl~~ee~~~~F  522 (622)
T Consensus       217 q--aa----LA~i~~~-------D~--rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe--  279 (322)
T COG2269         217 Q--AA----LAQISTG-------DP--RVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDE--  279 (322)
T ss_pred             H--HH----HHCCCCC-------CC--CHHHHHHHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH--
T ss_conf             8--87----6046778-------96--256664320100221024000178899999999988999863788777887--


Q ss_pred             HHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf             78999986084973422246899999983739840321378999
Q gi|254780419|r  523 GGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ  566 (622)
Q Consensus       523 g~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~  566 (622)
T Consensus       280 -~fl~Al~~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~  321 (322)
T COG2269         280 -DFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR  321 (322)
T ss_pred             -HHHHHHHH-CCCCCCCEECHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf             -89999985-8986541323889999981821487776131146