HHsearch alignment for GI: 254780419 and conserved domain: COG2269
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=1e-34 Score=267.87 Aligned_cols=291 Identities=25% Similarity=0.390 Sum_probs=200.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------CCCCCCCCCCCHHHHHHCCCCHHHH-HHHHHCCCHHH
Q ss_conf 2124589999999875203651462033211246456------6454322222103443112385456-44331057023
Q gi|254780419|r 140 KNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEG------ARDFLVPSRVNQGSFYALPQAPQQY-KQLLMASGFDR 212 (622)
Q Consensus 140 ~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeG------ArdFlVPsR~~~g~fYALpQSPQly-KQlLmv~G~dr 212 (622)
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~-L~TSPEy~mKrLL-Aag~~~ 91 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLW-LHTSPEYHMKRLL-AAGSGP 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEE-EECCCHHHHHHHH-HCCCCC
T ss_conf 99998999999999999876925853367650789864234456676546766653036-6568077789999-754886
Q ss_pred HEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCCCC
Q ss_conf 31100110377766553800003565410268999999999999999999980872345773212189887513-67776
Q gi|254780419|r 213 YFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRY-GTDKP 291 (622)
Q Consensus 213 yfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~Y-GsDKP 291 (622)
T Consensus 92 ifql~kvfRN~E-~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~--------~~E~ls~~eaF~r~~gid~l 162 (322)
T COG2269 92 IFQLGKVFRNEE-MGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV--------EAERLSYQEAFLRYLGIDPL 162 (322)
T ss_pred CHHHHHHHHCCC-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC--------CCCEEEHHHHHHHHHCCCCC
T ss_conf 014547772633-256679843676510067859999999999999997037--------85355599999998388945
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 44476401244310178752456668740378479999627876652103567799987642024623552047775333
Q gi|254780419|r 292 DLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAG 371 (622)
Q Consensus 292 DLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~ 371 (622)
T Consensus 163 ~----------------~~------------------------------~~~L~~~~~~~---~l~---~--~------- 181 (322)
T COG2269 163 S----------------AD------------------------------KTELREAAAKL---GLS---A--A------- 181 (322)
T ss_pred C----------------CC------------------------------HHHHHHHHHHC---CCC---C--C-------
T ss_conf 2----------------42------------------------------99999999855---877---7--7-------
Q ss_pred CCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCEEECCCC
Q ss_conf 5702553252789999998188755726998088541100134788999877300355--75102889607705354554
Q gi|254780419|r 372 MGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINC--NCFEFCWIMDFPFYEWNEEE 449 (622)
Q Consensus 372 ~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~--~~~~flWV~DFPLFe~dee~ 449 (622)
T Consensus 182 --------~~~~~d~L~~~lf-------------------------~~------~VEP~lg~~rpt~ly~fP~------~ 216 (322)
T COG2269 182 --------TDEDWDTLLQLLF-------------------------VE------GVEPNLGKERPTFLYHFPA------S 216 (322)
T ss_pred --------CCCCHHHHHHHHH-------------------------HH------HCCCCCCCCCCEEEEECCH------H
T ss_conf --------7558999999988-------------------------86------4075668888448872727------7
Q ss_pred CCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHH-------CCCCHHHHHHHH
Q ss_conf 7000211002476643065541887774131367777567721251231569999999998-------599989998667
Q gi|254780419|r 450 KKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSN-------VGISKEVVENRF 522 (622)
Q Consensus 450 ~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~-------lgl~~ee~~~~F 522 (622)
T Consensus 217 q--aa----LA~i~~~-------D~--rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe-- 279 (322)
T COG2269 217 Q--AA----LAQISTG-------DP--RVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDE-- 279 (322)
T ss_pred H--HH----HHCCCCC-------CC--CHHHHHHHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH--
T ss_conf 8--87----6046778-------96--256664320100221024000178899999999988999863788777887--
Q ss_pred HHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 78999986084973422246899999983739840321378999
Q gi|254780419|r 523 GGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ 566 (622)
Q Consensus 523 g~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~ 566 (622)
T Consensus 280 -~fl~Al~~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 280 -DFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred -HHHHHHHH-CCCCCCCEECHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf -89999985-8986541323889999981821487776131146