HHsearch alignment for GI: 254780419 and conserved domain: PRK04036
>PRK04036 DNA polymerase II small subunit; Validated.
Probab=96.44 E-value=0.082 Score=32.46 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=53.5
Q ss_pred HCCCEEEEEEEECCCCCCC-CEEEEEEECCCCEEEEEECCCC-HHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 9898899997980044469-8799999779825999974881-57899852898858999999997
Q gi|254780419|r 16 DVGSFVRLSGWVHRVRPHG-GIIFLDIRDHYGITQVVANPDS-ACFEIAKSVRSEWVLCIDGLVMS 79 (622)
Q Consensus 16 ~~g~~V~i~GwV~~~R~~g-~l~F~~lrD~sG~~Q~v~~~~~-~~~~~~~~l~~esvv~v~G~V~~ 79 (622)
T Consensus 144 ~~~~ev~IIGmV~d~r~tknG~~~~~lED~tG~i~vli~k~~~~~~~~a~~ll~DeVIgv~G~~s~ 209 (497)
T PRK04036 144 KGEEEVSIIGMVSDIRSTKNGHKIVELEDPTGTFSVLIMKDREDLGELAEDLLPDEVIGVKGTLSG 209 (497)
T ss_pred CCCCCEEEEEEECCCEECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 689608999997541313677479999878983999994783787777762457757899999869