HHsearch alignment for GI: 254780419 and conserved domain: cd00496
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=99.20 E-value=1.3e-10 Score=95.45 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCC--------CCCCCCCCCCCCCCCCHHHHHH-------CC--CCHHHHHHHHHCC
Q ss_conf 99999998752036514620332112--------4645664543222221034431-------12--3854564433105
Q gi|254780419|r 146 TRIINSMRCRMIAENFIECSTPILTA--------SSPEGARDFLVPSRVNQGSFYA-------LP--QAPQQYKQLLMAS 208 (622)
Q Consensus 146 s~i~~~~R~~l~~~gF~EveTP~L~k--------sTpeGArdFlVPsR~~~g~fYA-------Lp--QSPQlyKQlLmv~ 208 (622)
T Consensus 4 ~~~~~~i~~~f~~~GF~~~~gp~ie~~~~NFD~Ln~P~d-----HPaR~~~DTfy~~~~~~~lLRtHTS~~q~r~l~~~~ 78 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQD-----HPARDMQDTFYINDPARLLLRTHTSAVQARALAKLK 78 (218)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCC-----CCCCCCCCEEEECCCCCCEECCCCCHHHHHHHHHCC
T ss_conf 899999999998779868228951231030453385988-----755372432786377660215787566799997458
Q ss_pred CHHHHEEEHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 70233110011037776655380000356541
Q gi|254780419|r 209 GFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME 240 (622)
Q Consensus 209 G~dryfqiarcFRdEd~R~dRqp~EFTqlD~E 240 (622)
T Consensus 79 ~p~~~~~~G~VyR~D~iDatH~~-~FhQ~Eg~ 109 (218)
T cd00496 79 PPIRIFSIGRVYRNDEIDATHLP-EFHQIEGL 109 (218)
T ss_pred CCCEEEECCCEEECCCCCCCCCC-EEEEEEEE
T ss_conf 98179942504653889843153-12576379