HHsearch alignment for GI: 254780419 and conserved domain: cd00669
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=0 Score=514.11 Aligned_cols=258 Identities=34% Similarity=0.563 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHH
Q ss_conf 2458999999987520365146203321124645-664543222221034431123854564433105702331100110
Q gi|254780419|r 142 IVKRTRIINSMRCRMIAENFIECSTPILTASSPE-GARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCF 220 (622)
Q Consensus 142 l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpe-GArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcF 220 (622)
T Consensus 1 lr~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~~f~~~~~-~~~~~~~L~~Spel~~k~ll~~g~~~if~i~~~F 79 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYN-ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNF 79 (269)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCCEEEEECC-CCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 916999999999999988989987985305789876742573137-8994077343889999999865888679984621
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCCCHHHHHHHCCCCCC
Q ss_conf 37776655380000356541026899999999999999999998087234---------577321218988751367776
Q gi|254780419|r 221 RDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTV---------SNNFLRICYDDAIRRYGTDKP 291 (622)
Q Consensus 221 RdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i---------~~pF~rmtY~eAm~~YGsDKP 291 (622)
T Consensus 80 R~e~~~~-rH~~EFtmlE~y~~~~d~~~~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ea~e~------ 152 (269)
T cd00669 80 RNEDLRA-RHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALER------ 152 (269)
T ss_pred CCCCCCC-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEHHHHHHH------
T ss_conf 0789865-543487757875148999999999999999999999655524535544445899878579999998------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 44476401244310178752456668740378479999627876652103567799987642024623552047775333
Q gi|254780419|r 292 DLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAG 371 (622)
Q Consensus 292 DLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~ 371 (622)
T Consensus 153 -------------------------------------------------------------------------------- 152 (269)
T cd00669 153 -------------------------------------------------------------------------------- 152 (269)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCC
Q ss_conf 57025532527899999981887557269980885411001347889998773003557510288960770535455470
Q gi|254780419|r 372 MGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKK 451 (622)
Q Consensus 372 ~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r 451 (622)
T Consensus 153 ----------------------------------------------------~-------~~p~fi~dyP~--------- 164 (269)
T cd00669 153 ----------------------------------------------------Y-------GQPLFLTDYPA--------- 164 (269)
T ss_pred ----------------------------------------------------H-------CCCEEEECCCH---------
T ss_conf ----------------------------------------------------4-------99789989850---------
Q ss_pred CCHHHCCC-CCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00211002-47664306554188777413136777756772125123156999999999859998999866778999986
Q gi|254780419|r 452 IDFAHNPF-TMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQ 530 (622)
Q Consensus 452 ~~s~HHPF-TaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~lgl~~ee~~~~Fg~lL~Al~ 530 (622)
T Consensus 165 ---~~~~~~~~~~~~-------~~~--~a~rfdl~~~G~El~nG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~ 232 (269)
T cd00669 165 ---EMHSPLASPHDV-------NPE--IADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALE 232 (269)
T ss_pred ---HCCCCCCCCCCC-------CCC--HHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf ---107802090799-------966--76650246786067032520488899999999856074455665899999987
Q ss_pred CCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 0849734222468999999837398403213789998
Q gi|254780419|r 531 CGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQN 567 (622)
Q Consensus 531 yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~~ 567 (622)
T Consensus 233 ~G~pp~~G~glG~dRL~m~~~g~~~Irdv~~FPr~rr 269 (269)
T cd00669 233 YGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMRR 269 (269)
T ss_pred CCCCCCEEEEEHHHHHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 7999971663479999999808996886247899889