HHsearch alignment for GI: 254780419 and conserved domain: cd00733
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=93.73 E-value=0.022 Score=36.53 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=18.0
Q ss_pred CCCCCEECCHHHHHHHHCCCCCCEEEEC
Q ss_conf 9734222468999999837398403213
Q gi|254780419|r 534 PPHGGIAAGIDRIVMLLLGAKNVREVSL 561 (622)
Q Consensus 534 PPHgG~alGlDRlvmll~g~~sIRdVIa 561 (622)
T Consensus 151 pv~~EiTYGLERiaMylQ~vd~v~dl~w 178 (279)
T cd00733 151 PISVEITYGLERIAMYLQGVDNVYDIEW 178 (279)
T ss_pred CCCEEEEHHHHHHHHHHHCCCHHEEEEC
T ss_conf 5323310119999999857542314123