HHsearch alignment for GI: 254780419 and conserved domain: cd00772
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.70 E-value=0.00018 Score=51.48 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC------C--CC-CCCCCCCCCCCCHHH---HHHC------------CC
Q ss_conf 12458999999987520365146203321124------6--45-664543222221034---4311------------23
Q gi|254780419|r 141 NIVKRTRIINSMRCRMIAENFIECSTPILTAS------S--PE-GARDFLVPSRVNQGS---FYAL------------PQ 196 (622)
Q Consensus 141 ~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ks------T--pe-GArdFlVPsR~~~g~---fYAL------------pQ 196 (622)
T Consensus 31 G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~~~~~~~e~~~~L~PT~Ee~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999999999829949812567998999976984443785237997348742123520167786899999986
Q ss_pred CHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCCCC----CCEEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 85456443310570233110011037776655380----000356541026899999999999999
Q gi|254780419|r 197 APQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLP----GEFYQLDMEMSFVEQDDILNTMENVLR 258 (622)
Q Consensus 197 SPQlyKQlLmv~G~dryfqiarcFRdEd~R~dRqp----~EFTqlD~EmsF~~~edvm~l~E~li~ 258 (622)
T Consensus 111 ~i~SyrdLP-----l~lyQ~~~~fR~E~r--~r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~ 169 (264)
T cd00772 111 FIKSWKDLP-----QHLNQIGNKFRDEIR--PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS 169 (264)
T ss_pred HCCCHHHCC-----HHHHHHHHHHHCCCC--CCCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 407665579-----778765578605788--55433232043411035325999999999999999