HHsearch alignment for GI: 254780419 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=617.44 Aligned_cols=304 Identities=28% Similarity=0.499 Sum_probs=236.9
Q ss_pred CCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCC
Q ss_conf 7898782112320001211112124589999999875203651462033211246456-645432222210344311238
Q gi|254780419|r 119 EYPESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEG-ARDFLVPSRVNQGSFYALPQA 197 (622)
Q Consensus 119 ~~~e~~rl~~R~LdLR~~~~~~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeG-ArdFlVPsR~~~g~fYALpQS 197 (622)
T Consensus 1 ~~~~e~r~~~R~Ldlr~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~eg~a~~f~~~--~~~~~~y-L~~S 77 (322)
T cd00776 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVS--YFGKPAY-LAQS 77 (322)
T ss_pred CCCHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEE-ECCC
T ss_conf 979788761641242898799999999999999999999889999979840078898654667621--0587600-1548
Q ss_pred HHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCCCCCCEEEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHCCC--------
Q ss_conf 54564433105702331100110377766553800003565410268-999999999999999999980872--------
Q gi|254780419|r 198 PQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFV-EQDDILNTMENVLRGVFEEFSNGN-------- 268 (622)
Q Consensus 198 PQlyKQlLmv~G~dryfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~-~~edvm~l~E~li~~i~~~v~~~~-------- 268 (622)
T Consensus 78 pel~Kql-li~G~~rVfei~~~FR~E~~~t~rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~ 156 (322)
T cd00776 78 PQLYKEM-LIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN 156 (322)
T ss_pred HHHHHHH-HHCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5889999-753424438872614079998753478887652555233289999999999999999999865267889987
Q ss_pred -------CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH
Q ss_conf -------3457732121898875136777644476401244310178752456668740378479999627876652103
Q gi|254780419|r 269 -------TVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFC 341 (622)
Q Consensus 269 -------~i~~pF~rmtY~eAm~~YGsDKPDLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~ 341 (622)
T Consensus 157 ~~~~~~~~~~~~~~r~~~~ea~~~-------------------------------------------------------- 180 (322)
T cd00776 157 QLNRELLKPLEPFPRITYDEAIEL-------------------------------------------------------- 180 (322)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHH--------------------------------------------------------
T ss_conf 512110024799642419999999--------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 56779998764202462355204777533357025532527899999981887557269980885411001347889998
Q gi|254780419|r 342 DRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIA 421 (622)
Q Consensus 342 D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia 421 (622)
T Consensus 181 ------l~~~~~~~------------~~~~~----~dl~~~~e~---------------------------------~l~ 205 (322)
T cd00776 181 ------LREKGVEE------------EVKWG----EDLSTEHER---------------------------------LLG 205 (322)
T ss_pred ------HHHCCCCC------------CCCCC----CCCCHHHHH---------------------------------HHH
T ss_conf ------98569966------------87766----633769999---------------------------------999
Q ss_pred HHHHCCCCCCEEEEEEEECCCEEECCCCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCE-EECCCCEECCC
Q ss_conf 77300355751028896077053545547000211002476643065541887774131367777567-72125123156
Q gi|254780419|r 422 QELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGF-EIASGGIRNHM 500 (622)
Q Consensus 422 ~~l~li~~~~~~flWV~DFPLFe~dee~~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~-EiggGSiRIHd 500 (622)
T Consensus 206 ~~~------~~~p~fv~d~P~------------~~~pfy~~~~~------~~~~--~~~rfel~~~G~~El~~g~~r~~d 259 (322)
T cd00776 206 EIV------KGDPVFVTDYPK------------EIKPFYMKPDD------DNPE--TVESFDLLMPGVGEIVGGSQRIHD 259 (322)
T ss_pred HHH------CCCCEEEECCHH------------HCCCCCCCCCC------CCHH--HHHHHHEECCCCEEECCHHHHHCC
T ss_conf 996------589889979744------------21976588668------8545--545420012892786776664089
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 9999999998599989998667789999860849734222468999999837398403213789998
Q gi|254780419|r 501 SEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQN 567 (622)
Q Consensus 501 ~~iQ~~~f~~lgl~~ee~~~~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~~ 567 (622)
T Consensus 260 ~~~l~~r~~~~g~~~~~----~~~yl~al~~G~PP~gG~glGiDRLvmll~g~~~Irdvi~FPr~~~ 322 (322)
T cd00776 260 YDELEERIKEHGLDPES----FEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHHHHHHHHCCCCHHH----HHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHEECCCCCCC
T ss_conf 99999999985999789----9999999766999972454389999999829972760513899999