HHsearch alignment for GI: 254780419 and conserved domain: cd00777
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=0 Score=636.41 Aligned_cols=280 Identities=52% Similarity=0.915 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHC
Q ss_conf 24589999999875203651462033211246456645432222210344311238545644331057023311001103
Q gi|254780419|r 142 IVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFR 221 (622)
Q Consensus 142 l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeGArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFR 221 (622)
T Consensus 1 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~ega~~f~~~~~~~~~~~~~L~~Spel~~k~l~~~g~~rvf~i~~~FR 80 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFR 80 (280)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECEEC
T ss_conf 96699999999999998898998798106878776766442441688760368879899999998568777579845174
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 77766553800003565410268999999999999999999980872345773212189887513677764447640124
Q gi|254780419|r 222 DEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHN 301 (622)
Q Consensus 222 dEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~YGsDKPDLR~~lei~d 301 (622)
T Consensus 81 ~E~~~~~h~~-EFtmLE~e~~~~~~~d~m~~~E~li~~i~~~~~~-~~~~~~~~rity~ea~~~~g~------------- 145 (280)
T cd00777 81 DEDLRADRQP-EFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLG-VELTTPFPRMTYAEAMERYGF------------- 145 (280)
T ss_pred CCCCCCCCCH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEEEHHHHHHHHCC-------------
T ss_conf 7888876634-7762344226888999999999999999999819-877999757768899998689-------------
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCH
Q ss_conf 43101787524566687403784799996278766521035677999876420246235520477753335702553252
Q gi|254780419|r 302 VTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNI 381 (622)
Q Consensus 302 it~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~ 381 (622)
T Consensus 146 -------------------------------------------------------------------------------- 145 (280)
T cd00777 146 -------------------------------------------------------------------------------- 145 (280)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCCHHHCCCCC
Q ss_conf 78999999818875572699808854110013478899987730035575102889607705354554700021100247
Q gi|254780419|r 382 VNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTM 461 (622)
Q Consensus 382 ~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~s~HHPFTa 461 (622)
T Consensus 146 ---------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~pf~~ 174 (280)
T cd00777 146 ---------------------------------------------------KFLWIVDFPLFEWDEEEGRLVSAHHPFTA 174 (280)
T ss_pred ---------------------------------------------------CCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf ---------------------------------------------------73311357533462442552222077347
Q ss_pred CCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 66430655418877741313677775677212512315699999999985999899986677899998608497342224
Q gi|254780419|r 462 PQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAA 541 (622)
Q Consensus 462 P~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~lgl~~ee~~~~Fg~lL~Al~yG~PPHgG~al 541 (622)
T Consensus 175 p~~~~~~~~~~~p~~~~~~~fdl~~~G~El~nG~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~G~pP~~G~gl 254 (280)
T cd00777 175 PKEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIAL 254 (280)
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEH
T ss_conf 82441677633802456777413568644235310227999999999985989667788899999997669998743515
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 68999999837398403213789998
Q gi|254780419|r 542 GIDRIVMLLLGAKNVREVSLFPMSQN 567 (622)
Q Consensus 542 GlDRlvmll~g~~sIRdVIaFPKt~~ 567 (622)
T Consensus 255 GiDRLvm~l~g~~~Irdvi~FPR~~n 280 (280)
T cd00777 255 GLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred HHHHHHHHHHCCCCHHEEECCCCCCC
T ss_conf 89999999928982870734799998