HHsearch alignment for GI: 254780419 and conserved domain: cd00778
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.95 E-value=4.5e-05 Score=55.78 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-C----CC---CCCCC--CCCCCCC--CHHHHHHCC-CC----HHHHH
Q ss_conf 21245899999998752036514620332112-4----64---56645--4322222--103443112-38----54564
Q gi|254780419|r 140 KNIVKRTRIINSMRCRMIAENFIECSTPILTA-S----SP---EGARD--FLVPSRV--NQGSFYALP-QA----PQQYK 202 (622)
Q Consensus 140 ~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~k-s----Tp---eGArd--FlVPsR~--~~g~fYALp-QS----PQlyK 202 (622)
T Consensus 30 ~G~~i~~~l~~~~r~~~~~~G~~ev~~P~l~~~~~~~k~sgh~~~y~~emf~v~~~g~~~~d~~y~LkPmne~~~~~i~~ 109 (261)
T cd00778 30 YGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFS 109 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 28999999999999999986996998833278899997428143057653355216852013560347888699999997
Q ss_pred HHHHCCC--H-HHHEEEHHHHCCCCCCCCCCC----CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4331057--0-233110011037776655380----000356541026899999999999999999998
Q gi|254780419|r 203 QLLMASG--F-DRYFQIAPCFRDEDPRSDRLP----GEFYQLDMEMSFVEQDDILNTMENVLRGVFEEF 264 (622)
Q Consensus 203 QlLmv~G--~-dryfqiarcFRdEd~R~dRqp----~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v 264 (622)
T Consensus 110 ~~~-~SYRdLPlrl~q~g~~~R~E~s-~-~~gL~RvReF~~dDahs~~~t~eq~~~e~~~~~~-~y~~i 174 (261)
T cd00778 110 KWI-RSYRDLPLKINQWVNVFRWETK-T-TRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD-LYKEF 174 (261)
T ss_pred HHH-CCCCCCCHHHHHCCCEECCCCC-C-CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHHH
T ss_conf 350-5402278255530422437788-8-8765325425234233655899999999999999-99999