HHsearch alignment for GI: 254780419 and conserved domain: cd00779
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.05 E-value=1.4e-05 Score=59.37 Aligned_cols=110 Identities=25% Similarity=0.301 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-------CC-CC-CCCCCCCCCHHHHHHC-CC-----------CHH
Q ss_conf 1245899999998752036514620332112464-------56-64-5432222210344311-23-----------854
Q gi|254780419|r 141 NIVKRTRIINSMRCRMIAENFIECSTPILTASSP-------EG-AR-DFLVPSRVNQGSFYAL-PQ-----------APQ 199 (622)
Q Consensus 141 ~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTp-------eG-Ar-dFlVPsR~~~g~fYAL-pQ-----------SPQ 199 (622)
T Consensus 30 G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v~d~--~~~~~~L~PT~E~~~~~~~~~~i~ 107 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR--HGKEFLLGPTHEEVITDLVANEIK 107 (255)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECC--CCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 999999999999999998599899765347388874425301368731544537--887773168874889999986503
Q ss_pred HHHHHHHCCCHHHHEEEHHHHCCCCCCCC---CCCCCEEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 56443310570233110011037776655---380000356541026899999999999999
Q gi|254780419|r 200 QYKQLLMASGFDRYFQIAPCFRDEDPRSD---RLPGEFYQLDMEMSFVEQDDILNTMENVLR 258 (622)
Q Consensus 200 lyKQlLmv~G~dryfqiarcFRdEd~R~d---Rqp~EFTqlD~EmsF~~~edvm~l~E~li~ 258 (622)
T Consensus 108 SyrdLPl-----~~~q~~~~fR~E~r~~~GllR~r-EF~~~d~hsf~~~~e~a~~~~~~~~~ 163 (255)
T cd00779 108 SYKQLPL-----NLYQIQTKFRDEIRPRFGLMRGR-EFLMKDAYSFDIDEESLEETYEKMYQ 163 (255)
T ss_pred CHHHCCE-----EEECCCCEECCCCCCCCCCCEEE-EEEEEHHHCCCCCHHHHHHHHHHHHH
T ss_conf 6122574-----54135335425667886632431-37700220356998999999999999