HHsearch alignment for GI: 254780419 and conserved domain: cd04320
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.77 E-value=1.1e-17 Score=146.15 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=79.9
Q ss_pred EEEEEEEECCCCCCC-CEEEEEEECCCCEEEEEECCC-----CHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCE
Q ss_conf 899997980044469-879999977982599997488-----15789985289885899999999758655588777865
Q gi|254780419|r 20 FVRLSGWVHRVRPHG-GIIFLDIRDHYGITQVVANPD-----SACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQ 93 (622)
Q Consensus 20 ~V~i~GwV~~~R~~g-~l~F~~lrD~sG~~Q~v~~~~-----~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~ 93 (622)
T Consensus 1 ~V~~rGwv~~~R~~g~kl~Fl~LRd~~g~iQ~V~~~~~~~~s~~m~~~~~~l~~ESvV~V~G~V~~~~~~-i-~~~~~~~ 78 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEP-I-KSCTQQD 78 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCC-C-CCCCCCC
T ss_conf 9899999972021797179999915871899999807887799999998559970099999999889975-5-6788687
Q ss_pred EEEEEEEEEEEECCC-CCCCCCCC
Q ss_conf 999988999950211-79986457
Q gi|254780419|r 94 IELSAQKIEILSVAE-ELPLPVFG 116 (622)
Q Consensus 94 ~Ei~~~~~~il~~a~-~~P~~~~~ 116 (622)
T Consensus 79 iEi~i~~i~vls~a~~~LPf~v~D 102 (102)
T cd04320 79 VELHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred EEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 899999999996689999941269