HHsearch alignment for GI: 254780419 and conserved domain: cd04322
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.88 E-value=3.7e-22 Score=178.01 Aligned_cols=104 Identities=27% Similarity=0.369 Sum_probs=87.8
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHHHHH-HCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 8999979800444698799999779825999974881---578998-528988589999999975865558877786599
Q gi|254780419|r 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACFEIA-KSVRSEWVLCIDGLVMSRSAETINANIITGQIE 95 (622)
Q Consensus 20 ~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~~~~-~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~E 95 (622)
T Consensus 1 ~V~v~GrV~~~R~~G~l~FidLrD~~g~iQv~~~~~~~~~~~~~~~~~~~~~gDvv~v~G~v~~---------t~tGel~ 71 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFK---------TKTGELS 71 (108)
T ss_pred CEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEC---------CCCCEEE
T ss_conf 9899999984706798299999969961899997564775677777634443449999978751---------7993499
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf 99889999502117998645766789878211232000
Q gi|254780419|r 96 LSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL 133 (622)
Q Consensus 96 i~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL 133 (622)
T Consensus 72 v~~~~~~lLsk~l~-plP~~~~~~~~~e~r~r~RyLDL 108 (108)
T cd04322 72 IFVKEFTLLSKSLR-PLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EEEEEHHCCCCCCC-CCCCCCCCCCCHHHEEHHHCCCC
T ss_conf 99649120066678-99944657779612401200369