HHsearch alignment for GI: 254780419 and conserved domain: cd04323

>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.75  E-value=1.6e-17  Score=144.82  Aligned_cols=83  Identities=31%  Similarity=0.443  Sum_probs=73.6

Q ss_pred             EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC-HHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             8999979800444698799999779825999974881-578998528988589999999975865558877786599998
Q gi|254780419|r   20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS-ACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSA   98 (622)
Q Consensus        20 ~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~-~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~   98 (622)
T Consensus         1 kV~l~GWV~~~R~~g~l~Fi~LRD~~G~iQ~V~~~~~~~~~~~~~~l~~Es~v~V~G~v~~~~~~~----~~~~~~Ei~~   76 (84)
T cd04323           1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRAK----QAPGGYELQV   76 (84)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCC----CCCCCEEEEE
T ss_conf             999999899862389928999950887999998886573689997388835999999999789777----7997599994


Q ss_pred             EEEEEEEC
Q ss_conf             89999502
Q gi|254780419|r   99 QKIEILSV  106 (622)
Q Consensus        99 ~~~~il~~  106 (622)
T Consensus        77 ~~i~vl~e   84 (84)
T cd04323          77 DYLEIIGE   84 (84)
T ss_pred             EEEEEECC
T ss_conf             39999639