HHsearch alignment for GI: 254780419 and conserved domain: cd04492
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=93.92 E-value=0.56 Score=26.49 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 446987999997798259999748815789985289885899999999758655588777865999988999950211
Q gi|254780419|r 31 RPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAE 108 (622)
Q Consensus 31 R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~~~~~il~~a~ 108 (622)
T Consensus 15 k~G~~Yl~l~L~D~tG~I~ak~W~~~~--~~~~~~~~g~~V~v~G~v~~y~----------g~~Ql~I~~i~~~~~~d 80 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEEYR----------GRLQLKIQRIRLVTEED 80 (83)
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCH--HHHHCCCCCCEEEEEEEEEEEC----------CCEEEEEEEEEECCCCC
T ss_conf 799917899998788768888857886--7883078999999999998889----------95108998968998344