HHsearch alignment for GI: 254780419 and conserved domain: pfam02938

>pfam02938 GAD GAD domain. This domain is found in some members of the GatB and aspartyl tRNA synthetases.
Probab=99.44  E-value=2.1e-13  Score=115.35  Aligned_cols=93  Identities=30%  Similarity=0.390  Sum_probs=77.5

Q ss_pred             HHHHHHCCCCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHC
Q ss_conf             66687403784799996278-76652103567799987642024623552047775333570255325278999999818
Q gi|254780419|r  314 FSKILSVNPGYEVWAIPAKG-GGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVNTEAIRVRLD  392 (622)
Q Consensus       314 f~~~~~~~~~~~v~~i~~~~-~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~~~~l~~~~~  392 (622)
T Consensus         1 F~~~l~~--GG~Vkai~vp~~a~~sRk~id~l~~~ak~~GakGL~~ikv~~~-----~~~gpi~Kfl~~e~~~~l~~~~~   73 (94)
T pfam02938         1 FSEALKK--GGSVKALCVPGGAGLSRKQIDELERFAKEFGAKGLAWIKVEGG-----GHTGPIAKFLTEEEVEELLERVG   73 (94)
T ss_pred             CCHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCHHHHHCCHHHHHHHHHHHC
T ss_conf             9347658--9989999878986225888999999999949884179997278-----76578887569999999999948


Q ss_pred             CCCCCCEEEEECCCCCCCCHH
Q ss_conf             875572699808854110013
Q gi|254780419|r  393 MQDGDSCFFIAGDPLKFCSFA  413 (622)
Q Consensus       393 ~~~GD~i~f~a~~~~~~~~~l  413 (622)
T Consensus        74 a~~GD~iff~Ag~~~~v~~~L   94 (94)
T pfam02938        74 AQNGDILLFVADKEKVVNKAL   94 (94)
T ss_pred             CCCCCEEEEECCCHHHHHHHC
T ss_conf             999999999789989999649