HHsearch alignment for GI: 254780419 and conserved domain: pfam02938
>pfam02938 GAD GAD domain. This domain is found in some members of the GatB and aspartyl tRNA synthetases.
Probab=99.44 E-value=2.1e-13 Score=115.35 Aligned_cols=93 Identities=30% Similarity=0.390 Sum_probs=77.5
Q ss_pred HHHHHHCCCCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHC
Q ss_conf 66687403784799996278-76652103567799987642024623552047775333570255325278999999818
Q gi|254780419|r 314 FSKILSVNPGYEVWAIPAKG-GGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVNTEAIRVRLD 392 (622)
Q Consensus 314 f~~~~~~~~~~~v~~i~~~~-~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~~~~l~~~~~ 392 (622)
T Consensus 1 F~~~l~~--GG~Vkai~vp~~a~~sRk~id~l~~~ak~~GakGL~~ikv~~~-----~~~gpi~Kfl~~e~~~~l~~~~~ 73 (94)
T pfam02938 1 FSEALKK--GGSVKALCVPGGAGLSRKQIDELERFAKEFGAKGLAWIKVEGG-----GHTGPIAKFLTEEEVEELLERVG 73 (94)
T ss_pred CCHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCHHHHHCCHHHHHHHHHHHC
T ss_conf 9347658--9989999878986225888999999999949884179997278-----76578887569999999999948
Q ss_pred CCCCCCEEEEECCCCCCCCHH
Q ss_conf 875572699808854110013
Q gi|254780419|r 393 MQDGDSCFFIAGDPLKFCSFA 413 (622)
Q Consensus 393 ~~~GD~i~f~a~~~~~~~~~l 413 (622)
T Consensus 74 a~~GD~iff~Ag~~~~v~~~L 94 (94)
T pfam02938 74 AQNGDILLFVADKEKVVNKAL 94 (94)
T ss_pred CCCCCEEEEECCCHHHHHHHC
T ss_conf 999999999789989999649