RPSBLAST alignment for GI: 254780419 and conserved domain: TIGR00459
>gnl|CDD|129551 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. Length = 583
Score = 534 bits (1378), Expect = e-152
Identities = 245/596 (41%), Positives = 358/596 (60%), Gaps = 17/596 (2%)
Query: 5 RTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKS 64
RTH CG L +G V L+GWV+R R GG+IF+D+RD GI QVV +PD+ ++AK
Sbjct: 2 RTHYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPDADALKLAKG 61
Query: 65 VRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESI 124
+R+E V+ + G V +R IN N+ TG+IE+ A+ I +L+ ++ PL + + + E +
Sbjct: 62 LRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPL-IIEKTDAEEEV 120
Query: 125 RFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDFLVPS 184
R KYR+LDLRR + + + R ++ ++R + + F+E TP+LT S+PEGARD+LVPS
Sbjct: 121 RLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARDYLVPS 180
Query: 185 RVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFV 244
RV++G FYALPQ+PQ +KQLLM SG DRY+QIA CFRDED R+DR P EF Q+DMEMSF+
Sbjct: 181 RVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQP-EFTQIDMEMSFM 239
Query: 245 EQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVTE 304
Q+D++ +E ++ VF E G + F + Y +A+ RYG+DKPDLR P+ + +VT+
Sbjct: 240 TQEDVMELIEKLVSHVFLEVK-GIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTD 298
Query: 305 HFVHSEFRVFSKILSVNPGYEVWAIPAKGGGG--NRAFCDRMNEWARSQGQPGLAYIFWR 362
F SEF+VFS + +N G V AI GG +R + ++A+ G GLAY+
Sbjct: 299 LFKDSEFKVFSNL--INDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVN 356
Query: 363 LDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQ 422
D P+ K L+ + + R D Q+GD F AG R + +
Sbjct: 357 EDGI-----NSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGK 411
Query: 423 ELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQG-GMESLKGNDLLSIKAFQ 481
+LG+++ + F F W++DFP +E ++E + AH+PFTMP+ +E+L+ A
Sbjct: 412 DLGLVDPDLFSFLWVVDFPMFEKDKEGRLCA-AHHPFTMPKDEDLENLE-AAPEEALAEA 469
Query: 482 YDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAA 541
YDLV NG E+ G IR H EV + F +GI E +FG L AF+ G PPH G A
Sbjct: 470 YDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFAL 529
Query: 542 GIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKK 597
G+DR++MLL G N+R+V FP + L+ +PS + +QL EL ++ KK
Sbjct: 530 GLDRLMMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIK--YVVKK 583