RPSBLAST alignment for GI: 254780419 and conserved domain: TIGR00459

>gnl|CDD|129551 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. Length = 583
 Score =  534 bits (1378), Expect = e-152
 Identities = 245/596 (41%), Positives = 358/596 (60%), Gaps = 17/596 (2%)

Query: 5   RTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKS 64
           RTH CG L    +G  V L+GWV+R R  GG+IF+D+RD  GI QVV +PD+   ++AK 
Sbjct: 2   RTHYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPDADALKLAKG 61

Query: 65  VRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESI 124
           +R+E V+ + G V +R    IN N+ TG+IE+ A+ I +L+ ++  PL +  + +  E +
Sbjct: 62  LRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPL-IIEKTDAEEEV 120

Query: 125 RFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDFLVPS 184
           R KYR+LDLRR  + + +  R ++  ++R  +  + F+E  TP+LT S+PEGARD+LVPS
Sbjct: 121 RLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARDYLVPS 180

Query: 185 RVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFV 244
           RV++G FYALPQ+PQ +KQLLM SG DRY+QIA CFRDED R+DR P EF Q+DMEMSF+
Sbjct: 181 RVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQP-EFTQIDMEMSFM 239

Query: 245 EQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVTE 304
            Q+D++  +E ++  VF E   G  +   F  + Y +A+ RYG+DKPDLR P+ + +VT+
Sbjct: 240 TQEDVMELIEKLVSHVFLEVK-GIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTD 298

Query: 305 HFVHSEFRVFSKILSVNPGYEVWAIPAKGGGG--NRAFCDRMNEWARSQGQPGLAYIFWR 362
            F  SEF+VFS +  +N G  V AI   GG    +R     + ++A+  G  GLAY+   
Sbjct: 299 LFKDSEFKVFSNL--INDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVN 356

Query: 363 LDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQ 422
            D         P+ K L+    + +  R D Q+GD   F AG            R  + +
Sbjct: 357 EDGI-----NSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGK 411

Query: 423 ELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQG-GMESLKGNDLLSIKAFQ 481
           +LG+++ + F F W++DFP +E ++E +    AH+PFTMP+   +E+L+        A  
Sbjct: 412 DLGLVDPDLFSFLWVVDFPMFEKDKEGRLCA-AHHPFTMPKDEDLENLE-AAPEEALAEA 469

Query: 482 YDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAA 541
           YDLV NG E+  G IR H  EV  + F  +GI  E    +FG L  AF+ G PPH G A 
Sbjct: 470 YDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFAL 529

Query: 542 GIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKK 597
           G+DR++MLL G  N+R+V  FP +     L+  +PS +  +QL EL ++     KK
Sbjct: 530 GLDRLMMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIK--YVVKK 583