RPSBLAST alignment for GI: 254780419 and conserved domain: TIGR00499

>gnl|CDD|129590 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. Length = 496

 Score = 81.3 bits (201), Expect = 8e-16
 Identities = 67/304 (22%), Positives = 128/304 (42%), Gaps = 39/304 (12%)

Query: 9   CGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSE 68
             +  + D    V ++G +   R  G   F+ ++D  G  Q+  N D    +  +     
Sbjct: 44  LSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYL 103

Query: 69  W----VLCIDGLVMSRSAETINANIITGQIELSAQKIEIL-SVAEELPLPVFGEREYPES 123
                ++ + G               TG++ +   +++IL      LP    G  +  E+
Sbjct: 104 LDLGDIIGVTGYPFKTK---------TGELSVHVTELQILTKALRPLPDKFHGLTD-QET 153

Query: 124 IRFKYRFLDL-----RRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEG-- 176
            R++ R+LDL      R T     + R++II ++R  +    FIE  TP+L    P G  
Sbjct: 154 -RYRQRYLDLIVNPDSRQTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQ-VIPGGAN 207

Query: 177 ARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQ 236
           AR F+          Y L  AP+ Y + L+  GF++ ++I   FR+E   +   P EF  
Sbjct: 208 ARPFITHHNALDMDLY-LRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNP-EFTM 265

Query: 237 LDMEMSFVEQDDILNTMENVLRGVFEEFS-----NGNTVSNNFL----RICYDDAIRRYG 287
           ++   ++ + +D+++  EN+ + + +E           +  +F     RI   +AI++Y 
Sbjct: 266 IEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYD 325

Query: 288 TDKP 291
            +  
Sbjct: 326 METG 329