HHsearch alignment for GI: 254780420 and conserved domain: COG0504
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism].
Probab=99.65 E-value=3.3e-15 Score=127.72 Aligned_cols=265 Identities=18% Similarity=0.295 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCC-------------------
Q ss_conf 7689999998539842366327654589789888774158874321011013333211168-------------------
Q gi|254780420|r 127 DTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSE------------------- 187 (396)
Q Consensus 127 DTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~------------------- 187 (396)
T Consensus 189 PTQhSVkeLR~iGI~PDiii~Rs~~~l~-~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~~ 267 (533)
T COG0504 189 PTQHSVKELRSIGIQPDILICRSERPLP-EEERRKIALFCNVPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLNA 267 (533)
T ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 8427789999658996659994588799-899999998638988885734667888771899987532789999858998
Q ss_pred ---CCCCCCCCCCCCCCCCCCCEEEEEECC-----CCCHHHHHHHH----HCCCCEEEECCC-C-----HHHHHHCCCCE
Q ss_conf ---653445434434677777149999679-----64102322222----024541330465-7-----44644135788
Q gi|254780420|r 188 ---KIWKWGEETSFLKSSDAKYHVVCIDYG-----IRSNLLRVLSS----LGCRITIVGAET-S-----YKDIMSLQPDG 249 (396)
Q Consensus 188 ---~~~~~~~~~~~~~~~~~~~kIvvIDfG-----iK~nIlr~L~~----~g~~v~Vvp~~~-~-----~~~i~~~~pdg 249 (396)
T Consensus 268 ~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dg 346 (533)
T COG0504 268 PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDG 346 (533)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHC-CCE
T ss_conf 8755677999999852877726999987675860679999999995076419840269875123665444556631-887
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCC-----CCCCCCEECCCCEEE---
Q ss_conf 998588888410112110122210257863478610058878752854466776752-----101123477897099---
Q gi|254780420|r 250 VLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH-----GVNHPVKNISNGTVE--- 321 (396)
Q Consensus 250 i~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Ghr-----G~N~Pv~~~~t~kv~--- 321 (396)
T Consensus 347 IlVPGGFG~RG~eG--kI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~ 424 (533)
T COG0504 347 ILVPGGFGYRGVEG--KIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVD 424 (533)
T ss_pred EEECCCCCCCCHHH--HHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 99689877675588--9999999986699868885667899999999851976576435488999865883354236776
Q ss_pred -------------EE----------------CCCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEECCCCEE-EECC
Q ss_conf -------------96----------------145761570343---6-998289999889980872686799778-9834
Q gi|254780420|r 322 -------------IV----------------SMNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRLIDQPVF-SVQY 367 (396)
Q Consensus 322 -------------iT----------------sqNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~~~~~~~-~vQf 367 (396)
T Consensus 425 lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Qf 504 (533)
T COG0504 425 LGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQF 504 (533)
T ss_pred CCCEEECCCEEEECCCCCHHHHHHCCCCEEEECCCHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 77500416610112788689987387714002153133088999999868969999868998689998389964898746
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8788776700168999999999973578
Q gi|254780420|r 368 HPESSPGPQDSYYLFSTFIDFMHKRKTM 395 (396)
Q Consensus 368 HPEa~PGP~D~~~~F~~F~~~i~~~k~~ 395 (396)
T Consensus 505 HPEf~SrP~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 505 HPEFKSRPLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 6313478999983479999999975317