HHsearch alignment for GI: 254780420 and conserved domain: COG0505
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=1097.84 Aligned_cols=366 Identities=52% Similarity=0.860 Sum_probs=349.0
Q ss_pred CCEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf 96689972898799997567624888898537888876014161425617321689736845882342046533321023
Q gi|254780420|r 12 PTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAV 91 (396)
Q Consensus 12 ~~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~ 91 (396)
T Consensus 2 ~~a~L~LeDGtvf~G~~fGA~g~~~GEvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~d~Es----~~i~~~ 77 (368)
T COG0505 2 MKAYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDEDFES----DRIHAA 77 (368)
T ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCC----CCCEEE
T ss_conf 8449996679888768668887577899996787765311568764855899714654302678211124----673288
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 66640465443455241798999974278321125768999999853984236632765458978988877415887432
Q gi|254780420|r 92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGA 171 (396)
Q Consensus 92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~ 171 (396)
T Consensus 78 G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (368)
T COG0505 78 GLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGP--ELDPAKLLERARAFPGILGT 155 (368)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHCCCCCCC
T ss_conf 9997236666575230058999999769977505518999999986697313761376--66868888887623898766
Q ss_pred CHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEE
Q ss_conf 10110133332111686534454344346777771499996796410232222202454133046574464413578899
Q gi|254780420|r 172 ELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVL 251 (396)
Q Consensus 172 dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~ 251 (396)
T Consensus 156 dlv~~VSt~~~~~~~~--~~~--------~~~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGif 225 (368)
T COG0505 156 DLVKEVSTKEPYTWPG--LNG--------GGEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIF 225 (368)
T ss_pred CCCCEEECCCCEECCC--CCC--------CCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEE
T ss_conf 5400565588444366--566--------777776799997673177999999779849997698999999851899799
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEE
Q ss_conf 85888884101121101222102578634786100588787528544667767521011234778970999614576157
Q gi|254780420|r 252 LSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAI 331 (396)
Q Consensus 252 lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v 331 (396)
T Consensus 226 lSNGPGDP~~~~-~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaV 304 (368)
T COG0505 226 LSNGPGDPAPLD-YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAV 304 (368)
T ss_pred EECCCCCHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEC
T ss_conf 748998806778-9999999986468983788688899998667864320368877896763165880899946886013
Q ss_pred EHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 034369982899998899808726867997789834878877670016899999999997357
Q gi|254780420|r 332 DASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKT 394 (396)
Q Consensus 332 ~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~ 394 (396)
T Consensus 305 d~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 305 DEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred CHHHCCCCCEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 822327776058981799970024527986378714899998986447799999999987524