HHsearch alignment for GI: 254780420 and conserved domain: TIGR00337

>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=99.44  E-value=5.2e-13  Score=112.29  Aligned_cols=187  Identities=21%  Similarity=0.354  Sum_probs=124.9

Q ss_pred             CCCCCCCCEEEEEE----CC-CCCHHHHHHHHH----CCC--CEEEEC-CCCHH-------HHHH-----CCCCEEEECC
Q ss_conf             46777771499996----79-641023222220----245--413304-65744-------6441-----3578899858
Q gi|254780420|r  199 LKSSDAKYHVVCID----YG-IRSNLLRVLSSL----GCR--ITIVGA-ETSYK-------DIMS-----LQPDGVLLSN  254 (396)
Q Consensus       199 ~~~~~~~~kIvvID----fG-iK~nIlr~L~~~----g~~--v~Vvp~-~~~~~-------~i~~-----~~pdgi~lSn  254 (396)
T Consensus       302 ~~~~~~~v~Ig~VGKY~eL~DaY~Sv~EAL~Hag~~~d~~v~i~Wi~s~d~e~~~~e~~k~~~l~~~~~~~~~DGILVPG  381 (571)
T TIGR00337       302 LINPKEEVTIGLVGKYVELKDAYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEEQEVDKAELLDGWNELSEVDGILVPG  381 (571)
T ss_pred             HHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             30552516798974002513567889999987677637425689862101320012001355532244543068068368


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-----CCCCCC---CEECCCCE-------
Q ss_conf             888841011211012221025786347861005887875285446677675-----210112---34778970-------
Q gi|254780420|r  255 GPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-----HGVNHP---VKNISNGT-------  319 (396)
Q Consensus       255 GPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-----rG~N~P---v~~~~t~k-------  319 (396)
T Consensus       382 GFG~RG~EG--KI~Ai~yAREN~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq~d~~~~~  459 (571)
T TIGR00337       382 GFGERGVEG--KIRAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPKSPVVDLLPEQKDQNGNK  459 (571)
T ss_pred             CCCCCCCHH--HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCE
T ss_conf             889766024--789999987636973302177788899997653479888741246455777331114253222446760


Q ss_pred             ---EEEEC-----------------------------------CCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEE
Q ss_conf             ---99961-----------------------------------45761570343---6-998289999889980872686
Q gi|254780420|r  320 ---VEIVS-----------------------------------MNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRL  357 (396)
Q Consensus       320 ---v~iTs-----------------------------------qNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~  357 (396)
T Consensus       460 ~VRt~~~~lGGTMRLG~ypc~l~~~~eWt~a~klYg~~~v~ERHRHRYE~Nn~~~~~~E~~GL~vsG~S~dg~l~EiiE~  539 (571)
T TIGR00337       460 EVRTEIEDLGGTMRLGLYPCILKPGSEWTLAFKLYGKEEVYERHRHRYEVNNEYREELENKGLIVSGTSPDGRLVEIIEL  539 (571)
T ss_pred             ECCEEECCCCCEEECCCCCEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEE
T ss_conf             01301013872430587221771787232675533786788712444122757898998579589998699838999984


Q ss_pred             CCCCEE-EECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             799778-983487887767001689999999
Q gi|254780420|r  358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       358 ~~~~~~-~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
T Consensus       540 ~~HP~FvA~QFHPEF~Srp~~p~plF~Gfv~  570 (571)
T TIGR00337       540 PDHPFFVACQFHPEFTSRPNRPHPLFLGFVK  570 (571)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCHHHHC
T ss_conf             7978688862267511677888875055324