Query         gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs    184 out of 3591
Neff          5.7 
Searched_HMMs 39220
Date          Sun May 29 16:19:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780420.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01368 CPSaseIIsmall carbam 100.0       0       0 1236.3  29.1  370   14-391     1-383 (383)
  2 CHL00197 carA carbamoyl-phosph 100.0       0       0 1131.7  33.2  376   10-395     4-383 (383)
  3 PRK12564 carbamoyl phosphate s 100.0       0       0 1114.1  32.9  352   13-390     4-355 (355)
  4 COG0505 CarA Carbamoylphosphat 100.0       0       0 1097.8  33.7  366   12-394     2-367 (368)
  5 PRK12838 carbamoyl phosphate s 100.0       0       0 1097.0  31.1  353   13-394     2-355 (356)
  6 KOG0370 consensus              100.0       0       0  893.9  26.1  348   14-395     3-358 (1435)
  7 pfam00988 CPSase_sm_chain Carb 100.0       0       0  433.9  12.9  130   13-146     2-131 (131)
  8 cd01744 GATase1_CPSase Small c 100.0       0       0  422.1  15.8  178  208-386     1-178 (178)
  9 PRK05670 anthranilate synthase 100.0 1.3E-42       0  320.8  16.5  182  208-393     2-192 (192)
 10 PRK00758 GMP synthase subunit  100.0 4.6E-41 1.4E-45  309.8  16.1  174  207-390     1-182 (184)
 11 PRK07649 para-aminobenzoate/an 100.0 7.5E-41 1.4E-45  308.3  16.0  185  208-396     2-195 (195)
 12 pfam00117 GATase Glutamine ami 100.0   2E-40 5.6E-45  305.2  13.5  177  209-386     1-185 (187)
 13 CHL00101 trpG anthranilate syn 100.0 6.2E-40 1.5E-44  301.8  15.3  178  208-389     2-189 (190)
 14 PRK08007 para-aminobenzoate sy 100.0   1E-39 2.7E-44  300.3  15.3  176  208-387     2-186 (187)
 15 cd01742 GATase1_GMP_Synthase T 100.0 1.7E-39 4.3E-44  298.7  15.1  172  208-386     1-181 (181)
 16 PRK06774 para-aminobenzoate sy 100.0 2.8E-39 7.1E-44  297.2  15.3  177  208-387     2-190 (191)
 17 PRK08857 para-aminobenzoate sy 100.0 5.8E-39 1.5E-43  295.0  16.1  177  208-387     2-191 (192)
 18 cd01743 GATase1_Anthranilate_S 100.0 5.5E-39 1.4E-43  295.1  14.4  175  208-386     1-184 (184)
 19 PRK13566 anthranilate synthase 100.0 9.2E-37 2.3E-41  279.5  16.8  190  201-393   519-719 (724)
 20 TIGR00888 guaA_Nterm GMP synth 100.0 2.7E-37   7E-42  283.2  12.3  177  208-392     1-194 (195)
 21 PRK07765 para-aminobenzoate sy 100.0 2.9E-36 7.5E-41  275.9  15.8  180  206-388     1-191 (221)
 22 PRK06895 para-aminobenzoate sy 100.0 3.1E-36 7.9E-41  275.8  14.6  177  206-388     3-189 (191)
 23 COG0512 PabA Anthranilate/para 100.0 3.2E-35 8.1E-40  268.7  15.6  179  206-388     2-190 (191)
 24 PRK09522 bifunctional anthrani 100.0 4.1E-34   1E-38  260.9  15.9  179  206-391     2-192 (531)
 25 PRK05637 anthranilate synthase 100.0 7.4E-34 1.9E-38  259.0  16.0  180  206-391     2-207 (208)
 26 PRK00074 guaA GMP synthase; Re 100.0 1.4E-32 3.4E-37  250.1  15.6  179  206-393     5-194 (513)
 27 TIGR01815 TrpE-clade3 anthrani 100.0 2.6E-31 6.7E-36  241.1  14.7  257  125-392   447-720 (726)
 28 TIGR00566 trpG_papA glutamine  100.0 1.1E-31 2.7E-36  243.8   8.8  170  208-387     2-211 (212)
 29 KOG0026 consensus               99.9 7.3E-27 1.9E-31  209.8  12.0  183  205-391    18-216 (223)
 30 TIGR01823 PabB-fungal para-ami  99.9 1.7E-25 4.4E-30  200.1   9.8  187  204-393     4-246 (851)
 31 COG0518 GuaA GMP synthase - Gl  99.9 3.7E-24 9.4E-29  190.8  11.2  175  206-390     2-194 (198)
 32 PRK13143 hisH imidazole glycer  99.9 6.6E-23 1.7E-27  182.0  13.6  170  206-390     2-201 (201)
 33 cd01745 GATase1_2 Subgroup of   99.9 9.8E-23 2.5E-27  180.8   9.4  149  215-386    20-189 (189)
 34 KOG1622 consensus               99.9 4.1E-22 1.1E-26  176.3  10.1  174  205-389    16-204 (552)
 35 KOG1224 consensus               99.9 6.5E-22 1.7E-26  174.9  10.2  186  203-396    12-224 (767)
 36 PRK13141 hisH imidazole glycer  99.9 7.4E-21 1.9E-25  167.5  14.3  168  207-389     2-203 (204)
 37 PRK11366 puuD gamma-glutamyl-g  99.9   8E-21   2E-25  167.3  13.5  172  217-393    29-248 (254)
 38 cd01748 GATase1_IGP_Synthase T  99.9   3E-21 7.6E-26  170.3  11.0  164  208-386     1-198 (198)
 39 PRK13175 consensus              99.9 2.2E-20 5.6E-25  164.2  14.6  171  206-391     2-206 (206)
 40 cd01741 GATase1_1 Subgroup of   99.9 7.5E-21 1.9E-25  167.5  11.8  166  207-386     1-188 (188)
 41 pfam07722 Peptidase_C26 Peptid  99.9 5.3E-21 1.4E-25  168.5  10.8  149  218-370    28-219 (219)
 42 PRK13181 hisH imidazole glycer  99.8 9.8E-21 2.5E-25  166.7   9.3  166  208-388     2-199 (199)
 43 COG2071 Predicted glutamine am  99.8 1.3E-18 3.4E-23  151.7  11.2  167  220-392    32-241 (243)
 44 PRK09065 glutamine amidotransf  99.8 6.6E-18 1.7E-22  146.8  11.6  162  206-373     4-192 (238)
 45 PRK13180 consensus              99.8 2.2E-17 5.5E-22  143.1  12.5  172  206-389     2-209 (209)
 46 PRK13144 consensus              99.7 3.7E-17 9.5E-22  141.5  12.7  165  207-389     2-188 (190)
 47 PRK13152 hisH imidazole glycer  99.7 2.2E-17 5.6E-22  143.1  11.3  164  208-388     2-201 (201)
 48 PRK07053 glutamine amidotransf  99.7 7.1E-18 1.8E-22  146.5   8.7  150  218-373    18-183 (235)
 49 PRK13177 consensus              99.7 3.9E-17   1E-21  141.3  11.8  164  206-387     3-204 (207)
 50 PRK06490 glutamine amidotransf  99.7 3.2E-17 8.1E-22  141.9  10.9  165  202-373     8-187 (243)
 51 PRK13146 hisH imidazole glycer  99.7 6.8E-17 1.7E-21  139.6  11.9  167  206-387     2-205 (208)
 52 PRK13153 consensus              99.7 5.2E-17 1.3E-21  140.5  10.8  164  208-388     2-203 (203)
 53 PRK13170 hisH imidazole glycer  99.7 4.1E-17   1E-21  141.2   9.8  165  207-388     2-196 (196)
 54 PRK05665 amidotransferase; Pro  99.7 1.7E-16 4.3E-21  136.9  12.9  122  246-373    57-190 (240)
 55 PRK08250 glutamine amidotransf  99.7 3.9E-17   1E-21  141.3   8.8  150  218-374    16-185 (235)
 56 PRK13172 consensus              99.7 2.5E-16 6.2E-21  135.7  12.7  166  206-388     2-213 (213)
 57 PRK13176 consensus              99.7 1.2E-16 3.2E-21  137.8  11.1  167  207-387     2-213 (216)
 58 PRK13171 consensus              99.7 1.9E-16   5E-21  136.4  11.8  167  206-389     2-198 (200)
 59 PRK05380 pyrG CTP synthetase;   99.7 3.3E-16 8.4E-21  134.8  12.6  263  128-394   190-532 (534)
 60 PRK07567 glutamine amidotransf  99.7 1.5E-16 3.9E-21  137.2  10.6  123  245-373    50-194 (242)
 61 PRK13178 consensus              99.7 5.3E-16 1.3E-20  133.3  13.1  168  208-391     2-208 (213)
 62 PRK13174 consensus              99.7 7.7E-16   2E-20  132.2  13.6  168  206-389     2-209 (212)
 63 CHL00188 hisH imidazole glycer  99.7 5.9E-16 1.5E-20  133.0  11.8  163  206-387     2-208 (210)
 64 PRK13525 glutamine amidotransf  99.7 1.8E-15 4.6E-20  129.6  13.1  166  206-392     2-190 (191)
 65 PRK13179 consensus              99.7 1.5E-15 3.7E-20  130.3  12.6  164  208-388     2-206 (207)
 66 PRK13173 consensus              99.7 2.2E-15 5.6E-20  129.0  13.2  167  206-388     2-209 (211)
 67 PRK13148 consensus              99.7 2.9E-15 7.5E-20  128.1  13.3  165  206-387     2-222 (225)
 68 PRK13151 consensus              99.7 6.4E-16 1.6E-20  132.8   9.9  165  207-389     2-194 (195)
 69 COG0118 HisH Glutamine amidotr  99.7 3.1E-15   8E-20  127.9  13.2  168  206-389     2-203 (204)
 70 COG0504 PyrG CTP synthase (UTP  99.7 3.3E-15 8.5E-20  127.7  12.9  265  127-395   189-532 (533)
 71 TIGR01855 IMP_synth_hisH imida  99.6 5.1E-16 1.3E-20  133.5   8.1  167  208-388     1-211 (211)
 72 cd01747 GATase1_Glutamyl_Hydro  99.6 5.7E-15 1.5E-19  126.1  11.5  177  217-393    23-250 (273)
 73 PRK13147 consensus              99.6 1.1E-14 2.8E-19  124.1  12.5  164  207-387     2-208 (211)
 74 PRK06186 hypothetical protein;  99.6 5.3E-14 1.4E-18  119.2  10.5  141  246-389    53-226 (229)
 75 cd01746 GATase1_CTP_Synthase T  99.5 2.4E-14 6.1E-19  121.7   8.4  144  240-386    50-235 (235)
 76 PRK13142 hisH imidazole glycer  99.5 6.9E-14 1.7E-18  118.5  10.7  161  208-387     2-186 (192)
 77 pfam01174 SNO SNO glutamine am  99.5 1.2E-13 3.2E-18  116.7  11.5  157  216-389     8-186 (188)
 78 PRK13527 glutamine amidotransf  99.5 2.2E-13 5.7E-18  114.9  11.8  154  221-390    21-194 (196)
 79 cd01749 GATase1_PB Glutamine A  99.5   1E-12 2.6E-17  110.3  11.6  161  208-386     3-183 (183)
 80 TIGR00337 PyrG CTP synthase; I  99.4 5.2E-13 1.3E-17  112.3   8.8  187  199-387   302-570 (571)
 81 KOG3179 consensus               99.2 3.4E-11 8.8E-16   99.5   7.4  136  232-372    46-195 (245)
 82 KOG2387 consensus               98.8 1.5E-08 3.8E-13   80.9   6.9  134  246-382   363-540 (585)
 83 KOG1559 consensus               98.8 2.2E-08 5.6E-13   79.7   6.8  153  217-373    80-272 (340)
 84 KOG0623 consensus               98.6 3.2E-07 8.1E-12   71.6   8.5  167  208-387     4-206 (541)
 85 TIGR01737 FGAM_synth_I phospho  98.4 3.4E-06 8.8E-11   64.3  10.2  180  207-388     2-263 (264)
 86 PRK01175 phosphoribosylformylg  98.4 7.8E-06   2E-10   61.8  11.3  186  205-391     3-254 (255)
 87 COG0047 PurL Phosphoribosylfor  98.4   2E-05 5.1E-10   58.9  12.6  177  205-388     2-229 (231)
 88 PRK03619 phosphoribosylformylg  98.3 2.4E-05 6.2E-10   58.3  12.0  121  266-391    67-222 (223)
 89 cd01740 GATase1_FGAR_AT Type 1  98.2 5.2E-05 1.3E-09   56.0  12.2  164  218-384    14-236 (238)
 90 PRK13526 glutamine amidotransf  98.0 1.5E-05 3.8E-10   59.8   6.4  153  207-388     4-179 (179)
 91 PRK01077 cobyrinic acid a,c-di  97.9 0.00033 8.3E-09   50.4  11.9   88  202-294   242-340 (451)
 92 TIGR01382 PfpI intracellular p  97.9 7.5E-06 1.9E-10   61.9   3.3   97  206-311    27-137 (189)
 93 cd01750 GATase1_CobQ Type 1 gl  97.9 0.00018 4.7E-09   52.1  10.2   66  221-294    16-89  (194)
 94 cd01653 GATase1 Type 1 glutami  97.4 0.00012 3.1E-09   53.4   3.5   73  218-290    16-92  (115)
 95 PRK05368 homoserine O-succinyl  97.4  0.0033 8.4E-08   43.3  10.7  148  237-393    90-255 (302)
 96 pfam04204 HTS Homoserine O-suc  97.3  0.0067 1.7E-07   41.1  11.2  148  237-393    89-254 (298)
 97 COG0311 PDX2 Predicted glutami  97.1  0.0048 1.2E-07   42.1   8.5  151  220-392    16-193 (194)
 98 PRK13896 cobyrinic acid a,c-di  97.1   0.027 6.9E-07   36.8  12.1  252   89-388   140-431 (432)
 99 pfam07685 GATase_3 CobB/CobQ-l  97.1  0.0027 6.9E-08   43.9   6.9   48  245-294     6-59  (158)
100 cd03128 GAT_1 Type 1 glutamine  96.9  0.0012 3.1E-08   46.3   3.8   73  218-290    16-92  (92)
101 cd03169 GATase1_PfpI_1 Type 1   96.7  0.0024 6.1E-08   44.3   4.4   60  233-293    63-124 (180)
102 COG1492 CobQ Cobyric acid synt  96.3   0.021 5.4E-07   37.6   7.1  216   58-294    85-342 (486)
103 cd03135 GATase1_DJ-1 Type 1 gl  96.0  0.0076 1.9E-07   40.7   3.6   61  233-293    47-109 (163)
104 PRK00784 cobyric acid synthase  96.0   0.018 4.5E-07   38.1   5.4  156  117-294   158-344 (492)
105 cd03140 GATase1_PfpI_3 Type 1   95.8   0.013 3.4E-07   39.0   4.2   64  230-294    45-108 (170)
106 KOG3210 consensus               95.6    0.18 4.6E-06   31.0   9.2   75  218-297    28-111 (226)
107 cd03130 GATase1_CobB Type 1 gl  95.4    0.11 2.7E-06   32.6   7.5   78  212-295    10-93  (198)
108 pfam01965 DJ-1_PfpI DJ-1/PfpI   95.4   0.017 4.3E-07   38.3   3.4   63  231-293    19-83  (141)
109 TIGR01369 CPSaseII_lrg carbamo  94.8    0.13 3.3E-06   32.1   6.7  164  109-285   471-681 (1089)
110 cd03134 GATase1_PfpI_like A ty  94.3   0.044 1.1E-06   35.3   3.3   60  233-293    49-110 (165)
111 PRK11574 hypothetical protein;  94.1   0.074 1.9E-06   33.8   4.1   65  232-296    52-118 (196)
112 PRK06278 cobyrinic acid a,c-di  94.1    0.11 2.7E-06   32.6   4.9   13  279-291    68-80  (482)
113 TIGR01857 FGAM-synthase phosph  93.8     0.2   5E-06   30.8   5.8  161  202-372  1013-1255(1279)
114 COG3442 Predicted glutamine am  93.7   0.052 1.3E-06   34.9   2.7  164  221-393    28-219 (250)
115 KOG2764 consensus               92.7    0.14 3.5E-06   31.8   3.6   66  230-296    52-119 (247)
116 PRK02006 murD UDP-N-acetylmura  92.6    0.32 8.2E-06   29.3   5.3   34   93-127    72-105 (501)
117 cd03131 GATase1_HTS Type 1 glu  92.5    0.16 4.1E-06   31.4   3.7   63  238-302    54-124 (175)
118 TIGR00313 cobQ cobyric acid sy  92.2    0.11 2.7E-06   32.7   2.5   45  246-294   287-339 (502)
119 COG0693 ThiJ Putative intracel  91.8     0.2 5.1E-06   30.7   3.5   63  233-295    53-117 (188)
120 PRK05297 phosphoribosylformylg  91.1     1.5 3.8E-05   24.6   9.0   89  201-293  1034-1143(1294)
121 cd03141 GATase1_Hsp31_like Typ  90.7    0.22 5.5E-06   30.5   2.7   61  234-294    78-140 (221)
122 cd03132 GATase1_catalase Type   90.1    0.27 6.9E-06   29.8   2.8   61  234-294    50-112 (142)
123 cd06315 PBP1_ABC_sugar_binding  89.3    0.71 1.8E-05   26.8   4.5   64  214-283    17-87  (280)
124 cd05296 GH4_P_beta_glucosidase  88.8    0.33 8.4E-06   29.2   2.5   66  239-311   128-197 (419)
125 PRK02231 ppnK inorganic polyph  88.6    0.46 1.2E-05   28.2   3.1   31  109-139    34-66  (272)
126 KOG0538 consensus               88.0     2.5 6.3E-05   23.0   7.8   93  205-299   200-304 (363)
127 cd06312 PBP1_ABC_sugar_binding  88.0     1.4 3.6E-05   24.7   5.3   71  222-297   150-230 (271)
128 cd05298 GH4_GlvA_pagL_like Gly  87.9    0.44 1.1E-05   28.3   2.7   73  233-311   120-197 (437)
129 KOG0292 consensus               87.9    0.59 1.5E-05   27.4   3.3   15  280-294   457-471 (1202)
130 COG4607 CeuA ABC-type enteroch  87.8    0.93 2.4E-05   26.0   4.3   48  202-253    55-125 (320)
131 PRK02645 ppnK inorganic polyph  87.7    0.61 1.5E-05   27.3   3.3   19  106-124    19-37  (304)
132 PRK12815 carB carbamoyl phosph  86.7     2.9 7.4E-05   22.6   6.9  144  128-284   480-660 (1068)
133 cd06305 PBP1_methylthioribose_  86.4     1.2 3.1E-05   25.2   4.3   48  240-292   173-225 (273)
134 PRK02155 ppnK inorganic polyph  86.3     1.1 2.7E-05   25.6   3.9   36   91-128     8-43  (291)
135 PRK01390 murD UDP-N-acetylmura  85.9     1.7 4.2E-05   24.3   4.7   24  117-140   113-141 (457)
136 cd03137 GATase1_AraC_1 AraC tr  85.3     1.3 3.2E-05   25.1   3.9   59  233-293    53-112 (187)
137 PRK00141 murD UDP-N-acetylmura  84.6     2.6 6.6E-05   22.9   5.2   30   93-127    79-108 (476)
138 TIGR01836 PHA_synth_III_C poly  84.5     1.6 4.1E-05   24.4   4.1   73  210-294    86-162 (367)
139 cd01538 PBP1_ABC_xylose_bindin  84.5     1.5 3.7E-05   24.7   3.9   41  246-291   190-231 (288)
140 PRK03369 murD UDP-N-acetylmura  84.1       3 7.8E-05   22.4   5.4   30   93-127    73-102 (487)
141 cd03139 GATase1_PfpI_2 Type 1   83.3       2 5.2E-05   23.6   4.2   58  234-293    52-110 (183)
142 PRK10936 periplasmic sensory p  82.7     2.8 7.2E-05   22.6   4.7   53  240-298   220-275 (340)
143 cd06317 PBP1_ABC_sugar_binding  82.7     1.9 4.8E-05   23.9   3.8   84  204-292   124-229 (275)
144 PRK03806 murD UDP-N-acetylmura  82.4       4  0.0001   21.6   5.4   24  117-140   104-132 (438)
145 PRK09701 D-allose transporter   82.3     1.7 4.5E-05   24.1   3.6   53  240-297   208-263 (311)
146 COG1797 CobB Cobyrinic acid a,  82.1     2.7 6.8E-05   22.8   4.5   90  206-301   246-350 (451)
147 PRK03372 ppnK inorganic polyph  81.9     1.8 4.6E-05   24.0   3.5   17  106-122    20-36  (303)
148 cd03133 GATase1_ES1 Type 1 glu  81.9     4.6 0.00012   21.1   6.0   86  214-305    55-152 (213)
149 cd06319 PBP1_ABC_sugar_binding  81.8     2.6 6.5E-05   22.9   4.3   68  219-291   147-226 (277)
150 PRK04308 murD UDP-N-acetylmura  81.7     3.5 8.9E-05   22.0   4.9   22  119-140   111-137 (445)
151 cd05297 GH4_alpha_glucosidase_  81.6     1.3 3.3E-05   25.0   2.7   81  218-311   114-198 (423)
152 cd06318 PBP1_ABC_sugar_binding  81.2     2.2 5.6E-05   23.4   3.8   50  241-295   183-235 (282)
153 PRK01438 murD UDP-N-acetylmura  81.2     3.7 9.5E-05   21.8   4.9   30   93-127    80-109 (481)
154 PRK03378 ppnK inorganic polyph  80.8       2 5.1E-05   23.7   3.4   33   90-124     7-39  (292)
155 PRK11197 lldD L-lactate dehydr  80.5     5.1 0.00013   20.8   5.5   98  211-310   228-346 (381)
156 PRK02649 ppnK inorganic polyph  80.2     1.8 4.6E-05   24.0   3.0   36   91-128     4-39  (305)
157 cd03332 LMO_FMN L-Lactate 2-mo  80.1     5.3 0.00013   20.7   7.1   86  211-299   236-334 (383)
158 PRK10355 xylF D-xylose transpo  80.0     2.4 6.1E-05   23.1   3.6   47  240-291   202-252 (330)
159 PRK10710 DNA-binding transcrip  80.0     5.1 0.00013   20.9   5.3   94  202-299     7-107 (240)
160 PRK01231 ppnK inorganic polyph  79.8       2 5.2E-05   23.6   3.2   36   91-128     7-42  (296)
161 cd03136 GATase1_AraC_ArgR_like  79.7     3.1   8E-05   22.3   4.1   58  235-294    55-112 (185)
162 COG2403 Predicted GTPase [Gene  79.3     5.6 0.00014   20.6   6.2   29  113-141   119-157 (449)
163 PRK04539 ppnK inorganic polyph  79.1     2.9 7.5E-05   22.5   3.8   33   90-124     7-39  (296)
164 PRK03708 ppnK inorganic polyph  78.8     2.5 6.4E-05   23.0   3.4   37   92-130     4-40  (278)
165 cd06309 PBP1_YtfQ_like Peripla  78.6     3.5 8.8E-05   22.0   4.1   40  246-290   185-227 (273)
166 cd06310 PBP1_ABC_sugar_binding  78.4     3.2   8E-05   22.3   3.8   43  246-293   183-226 (273)
167 TIGR00329 gcp metalloendopepti  78.4     1.2 2.9E-05   25.4   1.6   88  246-349    74-164 (337)
168 cd02067 B12-binding B12 bindin  77.9     2.5 6.4E-05   23.0   3.2   84  212-298    13-105 (119)
169 PRK04759 consensus              77.8     3.3 8.3E-05   22.2   3.7   35   90-128     7-41  (294)
170 cd05197 GH4_glycoside_hydrolas  77.7     2.3 5.9E-05   23.3   2.9   82  218-311   112-197 (425)
171 PRK05294 carB carbamoyl phosph  77.4     6.3 0.00016   20.2   6.6   75  202-284   550-659 (1063)
172 cd04737 LOX_like_FMN L-Lactate  77.4     3.4 8.6E-05   22.1   3.7   82  216-299   209-302 (351)
173 cd06313 PBP1_ABC_sugar_binding  77.2     3.1 7.8E-05   22.4   3.5   52  240-296   175-228 (272)
174 cd06316 PBP1_ABC_sugar_binding  77.2       3 7.7E-05   22.4   3.4   89  204-297   125-233 (294)
175 PRK01911 ppnK inorganic polyph  77.0     2.7 6.9E-05   22.8   3.2   16  242-257   169-184 (290)
176 COG0771 MurD UDP-N-acetylmuram  76.7     6.4 0.00016   20.1   5.0   24  117-140   109-137 (448)
177 cd03147 GATase1_Ydr533c_like T  76.4     3.5 8.9E-05   22.0   3.6   57  236-292    84-142 (231)
178 PRK00683 murD UDP-N-acetylmura  76.1     4.9 0.00013   20.9   4.3   25  116-140   100-129 (418)
179 cd02072 Glm_B12_BD B12 binding  75.3     2.4 6.2E-05   23.1   2.5   45  212-257    13-61  (128)
180 TIGR01163 rpe ribulose-phospha  74.8     7.3 0.00019   19.7   4.9   96  126-234    93-197 (216)
181 cd02071 MM_CoA_mut_B12_BD meth  74.6     2.4 6.2E-05   23.1   2.4   45  212-257    13-61  (122)
182 PRK10955 DNA-binding transcrip  74.6     7.4 0.00019   19.7   4.9   89  207-299     3-97  (232)
183 cd06301 PBP1_rhizopine_binding  74.6       5 0.00013   20.9   4.0   43  246-293   183-227 (272)
184 PRK11411 fecB iron-dicitrate t  74.4     7.5 0.00019   19.7   5.1   17  237-253   222-238 (297)
185 PRK02472 murD UDP-N-acetylmura  73.8     7.7  0.0002   19.6   5.2   30  111-140   105-139 (450)
186 cd06302 PBP1_LsrB_Quorum_Sensi  73.7     4.5 0.00012   21.2   3.6   48  240-292   177-227 (298)
187 cd02809 alpha_hydroxyacid_oxid  73.4     4.8 0.00012   21.0   3.6   82  217-299   161-253 (299)
188 cd01139 TroA_f Periplasmic bin  73.0     7.8  0.0002   19.5   4.7   22  236-257   223-244 (342)
189 cd06322 PBP1_ABC_sugar_binding  72.8       6 0.00015   20.3   4.0   34  246-284   179-212 (267)
190 cd03138 GATase1_AraC_2 AraC tr  72.8     5.2 0.00013   20.8   3.7   57  235-293    60-120 (195)
191 PRK11083 DNA-binding response   72.5       8  0.0002   19.4   4.6   91  206-299     4-101 (229)
192 CHL00148 orf27 Ycf27; Reviewed  71.9     5.8 0.00015   20.5   3.8   93  203-299     4-103 (240)
193 PRK02261 methylaspartate mutas  71.9     3.3 8.5E-05   22.1   2.5   70  212-284    17-92  (137)
194 cd06289 PBP1_MalI_like Ligand-  71.4     8.1 0.00021   19.4   4.4   49  336-393   204-252 (268)
195 cd06314 PBP1_tmGBP Periplasmic  71.3     6.8 0.00017   20.0   4.0   53  240-297   171-226 (271)
196 PRK13856 two-component respons  70.7       9 0.00023   19.1   5.0   90  206-299     2-99  (241)
197 PRK11780 isoprenoid biosynthes  70.5     6.2 0.00016   20.2   3.7   86  214-305    58-155 (217)
198 PRK01368 murD UDP-N-acetylmura  70.2     9.2 0.00024   19.0   5.1   27  115-141   101-132 (450)
199 cd06282 PBP1_GntR_like_2 Ligan  70.1     9.3 0.00024   19.0   4.7   25  361-390   223-247 (266)
200 KOG1273 consensus               70.0     9.3 0.00024   19.0   5.0   52   97-151    26-77  (405)
201 cd02922 FCB2_FMN Flavocytochro  69.4     6.6 0.00017   20.0   3.6   86  211-299   196-297 (344)
202 cd06308 PBP1_sensor_kinase_lik  68.8     7.9  0.0002   19.5   3.9   34  246-284   182-216 (270)
203 cd06306 PBP1_TorT-like TorT-li  68.7     5.3 0.00013   20.7   3.0   17  275-291   208-224 (268)
204 cd01140 FatB Siderophore bindi  68.6     9.9 0.00025   18.8   4.8   20  236-255   193-212 (270)
205 cd06321 PBP1_ABC_sugar_binding  68.4     7.4 0.00019   19.7   3.7   34  246-284   181-214 (271)
206 TIGR03659 IsdE heme ABC transp  67.8      10 0.00026   18.7   5.5   65   66-143    73-139 (289)
207 PRK10653 D-ribose transporter   67.1     9.2 0.00023   19.0   4.0   34  246-284   207-240 (295)
208 cd01537 PBP1_Repressors_Sugar_  67.0     9.6 0.00025   18.9   4.1   55   92-148     3-63  (264)
209 TIGR01383 not_thiJ DJ-1 family  66.9     5.2 0.00013   20.8   2.7   89  200-293    23-115 (186)
210 PRK09393 ftrA transcriptional   66.7      11 0.00028   18.5   4.3   57  236-294    65-121 (320)
211 COG1214 Inactive homolog of me  66.2     7.6 0.00019   19.6   3.4   68  246-322    58-126 (220)
212 PRK11625 Rho-binding antitermi  66.1      11 0.00027   18.6   4.1   55   14-74     26-81  (84)
213 PRK08227 aldolase; Validated    65.4     7.1 0.00018   19.8   3.1   16  238-253   126-141 (291)
214 TIGR01316 gltA glutamate synth  65.2     5.4 0.00014   20.6   2.5   48  215-262   190-245 (462)
215 cd06300 PBP1_ABC_sugar_binding  65.0     8.7 0.00022   19.2   3.5   23  119-141    62-87  (272)
216 cd01539 PBP1_GGBP Periplasmic   64.6     9.8 0.00025   18.8   3.7   88  200-292   134-248 (303)
217 cd01540 PBP1_arabinose_binding  64.5      11 0.00029   18.4   4.0   47  240-290   184-235 (289)
218 cd00958 DhnA Class I fructose-  64.4     8.2 0.00021   19.4   3.3   68  220-291   149-219 (235)
219 pfam09897 DUF2124 Uncharacteri  64.2     6.4 0.00016   20.1   2.7   58  240-303    74-134 (147)
220 PRK10957 iron-enterobactin tra  64.2      12 0.00031   18.2   5.5   22  237-258   106-127 (319)
221 cd06320 PBP1_allose_binding Pe  64.1      12 0.00029   18.3   4.0   45  241-290   175-222 (275)
222 cd04815 PA_M28_2 PA_M28_2: Pro  63.9     6.6 0.00017   20.0   2.7  111   26-137     7-126 (134)
223 pfam04848 Pox_A22 Poxvirus A22  63.3     6.7 0.00017   20.0   2.7   53  207-260     2-66  (143)
224 COG1486 CelF Alpha-galactosida  63.2     8.4 0.00022   19.3   3.2  162  103-312    13-202 (442)
225 pfam01070 FMN_dh FMN-dependent  63.1      11 0.00027   18.6   3.7   77  220-299   161-250 (301)
226 COG2185 Sbm Methylmalonyl-CoA   62.2      13 0.00033   18.0   4.0   54  204-258    11-75  (143)
227 COG0595 mRNA degradation ribon  61.8     8.3 0.00021   19.4   2.9   45   90-139    67-113 (555)
228 pfam02056 Glyco_hydro_4 Family  61.5     9.7 0.00025   18.9   3.2   49  239-293   128-176 (183)
229 smart00732 YqgFc Likely ribonu  61.4      13 0.00034   17.9   5.1   48  206-253     1-58  (99)
230 cd06292 PBP1_LacI_like_10 Liga  61.3      13 0.00034   17.9   4.7   10  220-229   114-123 (273)
231 cd05797 Ribosomal_L10 Ribosoma  60.5      14 0.00035   17.8   3.8   92  207-302    21-127 (157)
232 pfam01976 DUF116 Protein of un  60.3      12  0.0003   18.3   3.5   69  209-285    66-138 (158)
233 cd03465 URO-D_like The URO-D _  59.2      13 0.00033   18.0   3.5   50  206-255   222-271 (330)
234 PRK13131 consensus              58.5      15 0.00038   17.5   5.5   36  208-243   119-157 (257)
235 PRK01710 murD UDP-N-acetylmura  58.1      15 0.00039   17.5   5.0   32  113-145   112-148 (458)
236 cd01141 TroA_d Periplasmic bin  57.8      15 0.00039   17.5   5.9   42  235-284    58-99  (186)
237 PRK13117 consensus              56.1      16 0.00042   17.3   7.7   33  208-240   126-161 (268)
238 TIGR01184 ntrCD nitrate ABC tr  55.6      16 0.00041   17.3   3.6   55  201-257   128-193 (230)
239 cd06344 PBP1_ABC_ligand_bindin  55.4      15 0.00038   17.6   3.3  163   93-284    42-224 (332)
240 cd01148 TroA_a Metal binding p  55.0      17 0.00043   17.2   6.8   18  236-253   213-230 (284)
241 PRK07226 fructose-bisphosphate  55.0      17 0.00043   17.2   3.8   68  220-291   166-236 (266)
242 TIGR03261 phnS2 putative 2-ami  54.7     8.8 0.00022   19.2   2.1   40  108-148    36-79  (334)
243 PRK04885 ppnK inorganic polyph  54.5      10 0.00027   18.6   2.4   19  240-258   141-159 (265)
244 pfam01513 NAD_kinase ATP-NAD k  54.2      12  0.0003   18.2   2.7   25   92-118     3-27  (243)
245 PRK04690 murD UDP-N-acetylmura  53.5      18 0.00046   17.0   5.0   26  119-145   116-146 (468)
246 PRK04663 murD UDP-N-acetylmura  53.1      18 0.00046   16.9   4.9   32  109-140    99-135 (438)
247 PRK02705 murD UDP-N-acetylmura  52.8      18 0.00047   16.9   3.8   25  115-139   106-135 (459)
248 cd06360 PBP1_alkylbenzenes_lik  52.6      18 0.00047   16.9   4.0  172   92-289    40-230 (336)
249 PRK03670 competence damage-ind  52.2      18 0.00046   17.0   3.3   11  247-257    61-71  (252)
250 PRK12778 putative bifunctional  51.8      19 0.00048   16.9   3.4   41  222-262   498-541 (760)
251 pfam02844 GARS_N Phosphoribosy  51.7      19 0.00049   16.8   3.7   38  238-282    49-90  (99)
252 cd01425 RPS2 Ribosomal protein  50.9      15 0.00038   17.6   2.7   35  243-285   124-158 (193)
253 cd03148 GATase1_EcHsp31_like T  50.7      12  0.0003   18.3   2.2   52  242-293    92-145 (232)
254 COG4977 Transcriptional regula  50.6      20 0.00051   16.7   3.7   57  236-294    68-125 (328)
255 KOG1210 consensus               50.1      12 0.00031   18.2   2.2   79  219-297   199-281 (331)
256 COG4090 Uncharacterized protei  49.2      19 0.00048   16.8   3.1   60  233-296    71-133 (154)
257 PRK10161 transcriptional regul  48.5      21 0.00054   16.5   5.2   91  207-299     4-102 (229)
258 PRK09605 O-sialoglycoprotein e  48.5      13 0.00034   17.9   2.2   12  378-389   501-512 (536)
259 pfam08660 Alg14 Oligosaccharid  48.3      10 0.00026   18.7   1.6   17  240-257    82-98  (166)
260 PRK00421 murC UDP-N-acetylmura  47.1      22 0.00057   16.3   5.2   31  111-141   101-136 (459)
261 pfam10281 Ish1 Putative stress  46.6      14 0.00035   17.8   2.0   32  107-138     5-37  (38)
262 PRK06395 phosphoribosylamine--  46.5      23 0.00058   16.3   4.4   30  111-140   109-142 (435)
263 COG1879 RbsB ABC-type sugar tr  46.2      22 0.00057   16.3   3.0   81   60-145    34-122 (322)
264 cd06267 PBP1_LacI_sugar_bindin  45.9      23 0.00059   16.2   4.4   12  109-120    19-30  (264)
265 TIGR01892 AcOrn-deacetyl acety  45.8      20  0.0005   16.7   2.7   50  336-386   229-280 (386)
266 cd03144 GATase1_ScBLP_like Typ  44.6      16  0.0004   17.4   2.0   65  219-288    18-88  (114)
267 PRK12779 putative bifunctional  44.6      24 0.00062   16.1   3.2   42  221-262   364-408 (944)
268 PRK10576 iron-hydroxamate tran  44.3      25 0.00063   16.0   4.2   48  205-256    32-103 (292)
269 PRK04020 rps2P 30S ribosomal p  44.0      21 0.00053   16.5   2.6   33  245-285   113-145 (204)
270 COG0521 MoaB Molybdopterin bio  43.7      19 0.00049   16.8   2.4   72  219-294    32-111 (169)
271 PRK09468 ompR osmolarity respo  43.7      25 0.00064   16.0   3.9   48  206-253     6-56  (239)
272 cd06311 PBP1_ABC_sugar_binding  43.2      25 0.00065   15.9   3.6   47   93-141    37-87  (274)
273 COG1004 Ugd Predicted UDP-gluc  43.1      26 0.00065   15.9   3.2   37  245-284   162-198 (414)
274 KOG2278 consensus               43.1      18 0.00046   17.0   2.2   49  128-178    11-61  (207)
275 PRK08745 ribulose-phosphate 3-  42.9      26 0.00066   15.9   4.0   26  209-234   174-199 (223)
276 PRK00561 ppnK inorganic polyph  42.7      21 0.00053   16.5   2.4   18  240-257   130-147 (259)
277 cd04730 NPD_like 2-Nitropropan  42.6      26 0.00066   15.9   6.5  158  122-300     9-183 (236)
278 KOG1834 consensus               42.1      17 0.00044   17.1   1.9   44  198-241   212-255 (952)
279 PRK10416 cell division protein  42.0      27 0.00068   15.8   6.6   60  219-281   315-381 (499)
280 PRK05299 rpsB 30S ribosomal pr  41.9      25 0.00063   16.0   2.7   31  246-284   157-187 (255)
281 cd06296 PBP1_CatR_like Ligand-  41.8      27 0.00068   15.8   4.6   28   92-120     3-30  (270)
282 cd00886 MogA_MoaB MogA_MoaB fa  41.1      21 0.00052   16.6   2.2   70  219-294    25-103 (152)
283 TIGR01011 rpsB_bact ribosomal   41.0      27 0.00068   15.8   2.8   31  246-284   157-187 (227)
284 PRK10610 chemotaxis regulatory  40.6      28 0.00071   15.6   4.0   51  203-253     3-57  (129)
285 KOG4842 consensus               40.4      20  0.0005   16.7   2.0   22  118-139    33-54  (278)
286 PRK09722 allulose-6-phosphate   40.0      28 0.00072   15.6   4.2   93  127-234    94-195 (227)
287 TIGR01686 FkbH FkbH domain; In  39.8      14 0.00035   17.8   1.1  108  129-256    42-152 (337)
288 PRK08883 ribulose-phosphate 3-  39.6      29 0.00073   15.5   4.3   94  126-234    93-195 (220)
289 pfam02992 Transposase_21 Trans  39.5      16  0.0004   17.4   1.4   45  228-274    64-112 (226)
290 TIGR02320 PEP_mutase phosphoen  39.3      27 0.00068   15.8   2.6   57   88-145    34-105 (272)
291 PRK08261 fabG 3-ketoacyl-(acyl  39.2      29 0.00074   15.5   5.5  102  110-235   128-239 (447)
292 pfam02310 B12-binding B12 bind  38.7      30 0.00076   15.4   3.9   40  213-253    15-58  (121)
293 pfam03652 UPF0081 Uncharacteri  38.7      30 0.00076   15.4   4.0   52  207-262     2-63  (134)
294 COG0533 QRI7 Metal-dependent p  38.0      25 0.00064   16.0   2.3   49  246-294    71-121 (342)
295 PRK11173 two-component respons  37.7      31 0.00078   15.3   5.5   49  207-255     5-56  (237)
296 COG2247 LytB Putative cell wal  37.5      26 0.00066   15.9   2.3   22  125-146    61-82  (337)
297 cd06355 PBP1_FmdD_like Peripla  37.4      31 0.00079   15.3   5.2  172   92-292    42-232 (348)
298 PRK06375 consensus              37.2      31  0.0008   15.3   3.4   16   66-81    139-154 (381)
299 COG0061 nadF NAD kinase [Coenz  37.0      31 0.00079   15.3   2.6   12  243-254   162-173 (281)
300 COG0036 Rpe Pentose-5-phosphat  36.8      32 0.00081   15.2   4.2   94  125-234    95-197 (220)
301 KOG1467 consensus               36.6      32 0.00082   15.2   5.5   80  200-286   380-470 (556)
302 TIGR01812 sdhA_frdA_Gneg succi  36.2      12 0.00031   18.2   0.4   16  354-371   252-268 (636)
303 cd06843 PLPDE_III_PvsE_like Ty  36.1      32 0.00083   15.2   3.9   38  109-148    39-76  (377)
304 PRK06720 hypothetical protein;  36.1      29 0.00075   15.5   2.4   15  219-233    32-46  (169)
305 pfam01256 Carb_kinase Carbohyd  36.1      33 0.00083   15.2   3.3   49  246-294   166-219 (241)
306 pfam07073 ROF Modulator of Rho  36.0      33 0.00083   15.2   4.5   55   12-72     18-78  (80)
307 COG1118 CysA ABC-type sulfate/  35.7      33 0.00084   15.1   3.3   55  206-262   156-225 (345)
308 PRK10816 DNA-binding transcrip  35.7      33 0.00084   15.1   5.1   79  218-299    15-98  (223)
309 pfam00814 Peptidase_M22 Glycop  35.2      15 0.00038   17.5   0.8   45  246-290    49-95  (225)
310 PRK06252 methylcobalamin:coenz  35.2      34 0.00085   15.1   3.6   52  208-260   233-284 (339)
311 cd03307 Mta_CmuA_like MtaA_Cmu  35.2      34 0.00086   15.1   3.5   53  207-260   224-276 (326)
312 pfam12257 DUF3608 Protein of u  35.0      24  0.0006   16.1   1.7   43  248-290   231-273 (281)
313 pfam03575 Peptidase_S51 Peptid  34.9      34 0.00086   15.0   3.0   46   92-140    13-58  (154)
314 PRK04761 ppnK inorganic polyph  34.9      29 0.00075   15.5   2.2   22  106-127     6-27  (246)
315 cd03146 GAT1_Peptidase_E Type   34.7      34 0.00087   15.0   3.5   68  222-292    54-129 (212)
316 cd04736 MDH_FMN Mandelate dehy  34.7      34 0.00087   15.0   3.8   86  212-299   220-315 (361)
317 PRK10693 response regulator of  34.7      33 0.00085   15.1   2.5   40  119-163    60-99  (337)
318 cd06331 PBP1_AmiC_like Type I   34.4      34 0.00088   15.0   3.2   82  206-291   133-230 (333)
319 PRK11070 ssDNA exonuclease Rec  34.4      29 0.00075   15.5   2.1   34  208-241   130-164 (574)
320 pfam06218 NPR2 Nitrogen permea  34.4      24 0.00061   16.1   1.7   58   51-115    44-109 (400)
321 CHL00067 rps2 ribosomal protei  34.4      35 0.00088   15.0   2.8   31  246-284   157-187 (227)
322 PRK13789 phosphoribosylamine--  34.2      35 0.00089   15.0   4.4   28  112-139   113-143 (426)
323 cd06298 PBP1_CcpA_like Ligand-  34.0      35 0.00089   14.9   4.4   23  269-292   168-190 (268)
324 cd02146 NfsA_FRP This family c  33.9      16 0.00041   17.3   0.8  140  134-288     4-162 (229)
325 TIGR02633 xylG D-xylose ABC tr  33.8      34 0.00087   15.0   2.4   13  218-230   182-194 (501)
326 PRK00109 Holliday junction res  33.5      36 0.00091   14.9   3.8   53  206-262     4-66  (141)
327 pfam00853 Runt Runt domain.     33.2      14 0.00036   17.7   0.4   25  100-127    26-50  (134)
328 cd01149 HutB Hemin binding pro  32.9      36 0.00093   14.8   3.0   20  237-256   182-201 (235)
329 cd06283 PBP1_RegR_EndR_KdgR_li  32.8      36 0.00093   14.8   4.6   55   91-147     2-62  (267)
330 cd06285 PBP1_LacI_like_7 Ligan  32.8      36 0.00093   14.8   4.7   14  111-124    70-83  (265)
331 pfam00318 Ribosomal_S2 Ribosom  32.8      36 0.00093   14.8   2.6   32  246-285   137-168 (205)
332 PRK08005 ribulose-phosphate 3-  32.5      37 0.00094   14.8   4.6  104  112-234    74-191 (210)
333 cd01541 PBP1_AraR Ligand-bindi  32.2      37 0.00095   14.7   4.8   11  219-229   112-122 (273)
334 cd01144 BtuF Cobalamin binding  32.0      18 0.00045   17.0   0.7   21  236-256   176-196 (245)
335 COG1058 CinA Predicted nucleot  32.0      38 0.00096   14.7   3.1   57  219-277    26-89  (255)
336 TIGR01467 cobI_cbiL precorrin-  31.8      22 0.00056   16.4   1.2   42  204-245    99-148 (243)
337 pfam07090 DUF1355 Protein of u  31.8      32 0.00081   15.2   2.0   47  207-254    23-74  (183)
338 TIGR01328 met_gam_lyase methio  31.7      38 0.00097   14.7   2.3   47  213-260   108-157 (392)
339 cd06270 PBP1_GalS_like Ligand   31.6      38 0.00097   14.7   4.5   54   92-147     3-62  (268)
340 cd01542 PBP1_TreR_like Ligand-  31.6      38 0.00097   14.7   4.7   11  219-229   105-115 (259)
341 TIGR03099 dCO2ase_PEP1 pyridox  31.4      38 0.00098   14.7   5.4   38  109-148    62-99  (398)
342 COG3220 Uncharacterized protei  31.0      24 0.00061   16.1   1.2   40  315-354   171-213 (282)
343 cd06274 PBP1_FruR Ligand bindi  30.9      39   0.001   14.6   4.7   21  209-229    96-117 (264)
344 KOG2708 consensus               30.7      28 0.00072   15.6   1.6   50  245-294    69-120 (336)
345 PRK10765 nitroreductase A; Pro  30.7      20 0.00051   16.7   0.8   48  133-181     6-53  (240)
346 cd06324 PBP1_ABC_sugar_binding  30.4      40   0.001   14.5   3.9   16  241-256   195-212 (305)
347 PRK00124 hypothetical protein;  30.3      10 0.00026   18.7  -0.8   81  213-297    10-93  (149)
348 PRK05417 glutathione-dependent  30.3      35  0.0009   14.9   2.0   37  355-391   107-144 (191)
349 PRK11749 putative oxidoreducta  30.2      40   0.001   14.5   4.9   38  222-260   199-239 (460)
350 pfam00834 Ribul_P_3_epim Ribul  29.9      41   0.001   14.5   4.5   26  209-234   169-194 (201)
351 COG2243 CobF Precorrin-2 methy  29.8      23  0.0006   16.2   1.0   41  204-244    89-135 (234)
352 PRK11914 diacylglycerol kinase  29.7      41   0.001   14.5   3.9   42  110-152    28-74  (304)
353 COG2242 CobL Precorrin-6B meth  29.5      41   0.001   14.4   4.2   82  205-292    58-145 (187)
354 TIGR01982 UbiB 2-polyprenylphe  29.5      29 0.00073   15.6   1.4   79  206-294   309-394 (452)
355 PRK10701 DNA-binding transcrip  29.2      42  0.0011   14.4   4.9   89  207-299     3-98  (240)
356 KOG0196 consensus               29.2      29 0.00073   15.5   1.4   47  209-258   472-525 (996)
357 PRK03815 murD UDP-N-acetylmura  29.2      42  0.0011   14.4   3.9   25  118-142    89-118 (401)
358 PRK00099 rplJ 50S ribosomal pr  29.1      42  0.0011   14.4   3.9   83  207-293    24-121 (164)
359 cd06278 PBP1_LacI_like_2 Ligan  29.0      42  0.0011   14.4   4.3   11  219-229   106-116 (266)
360 TIGR02461 osmo_MPG_phos mannos  29.0      41  0.0011   14.4   2.2   40  206-245    88-142 (248)
361 cd01147 HemV-2 Metal binding p  28.8      42  0.0011   14.4   2.4   23  236-258   202-224 (262)
362 PRK00286 xseA exodeoxyribonucl  28.4      43  0.0011   14.3   3.6   86  202-288   132-235 (443)
363 cd03129 GAT1_Peptidase_E_like   28.4      43  0.0011   14.3   4.8   87  204-292    28-129 (210)
364 cd01982 Chlide_reductase_Z Chl  28.4      41   0.001   14.5   2.0   27  219-245   177-204 (412)
365 TIGR01469 cobA_cysG_Cterm urop  28.2      18 0.00047   16.9   0.2   22  257-279    87-108 (242)
366 TIGR00649 MG423 conserved hypo  28.2      43  0.0011   14.3   3.6   85  207-297    24-117 (593)
367 pfam01497 Peripla_BP_2 Peripla  28.1      43  0.0011   14.3   5.9   20  236-255   184-203 (236)
368 cd01545 PBP1_SalR Ligand-bindi  27.9      44  0.0011   14.3   4.3   28   92-120     3-30  (270)
369 PRK11205 tbpA thiamine transpo  27.9      34 0.00086   15.0   1.6   48  103-150    27-82  (326)
370 PRK10766 DNA-binding transcrip  27.9      44  0.0011   14.3   3.6   90  206-299     3-99  (224)
371 PRK09534 btuF corrinoid ABC tr  27.8      44  0.0011   14.2   3.0  112  109-254   131-257 (364)
372 cd01146 FhuD Fe3+-siderophore   27.7      44  0.0011   14.2   4.7   21  236-256   189-209 (256)
373 cd06831 PLPDE_III_ODC_like_AZI  27.5      44  0.0011   14.2   2.3   54  109-165    49-102 (394)
374 KOG1538 consensus               27.4      45  0.0011   14.2   3.9   19   14-32    147-165 (1081)
375 TIGR02541 flagell_FlgJ flagell  27.3      10 0.00026   18.7  -1.2   15  274-294   201-215 (332)
376 pfam02601 Exonuc_VII_L Exonucl  27.1      45  0.0012   14.2   3.5   17   58-74     41-57  (295)
377 TIGR00700 GABAtrnsam 4-aminobu  27.1      36 0.00092   14.8   1.6   92  208-304    42-150 (427)
378 TIGR02155 PA_CoA_ligase phenyl  26.9      28 0.00071   15.6   1.0   24  230-253   146-174 (431)
379 cd01143 YvrC Periplasmic bindi  26.9      45  0.0012   14.1   3.6   17  236-252   179-195 (195)
380 TIGR01681 HAD-SF-IIIC HAD-supe  26.9      40   0.001   14.5   1.8   38  219-256    54-99  (179)
381 COG0391 Uncharacterized conser  26.8      46  0.0012   14.1   3.6   43  240-284   182-228 (323)
382 TIGR03676 aRF1/eRF1 peptide ch  26.7      39 0.00098   14.6   1.7   48  246-295   208-261 (403)
383 pfam03262 Corona_6B_7B Coronav  26.7      24 0.00061   16.1   0.6  114  207-333    51-182 (209)
384 cd06333 PBP1_ABC-type_HAAT_lik  26.6      46  0.0012   14.1   4.0  161   93-283    42-220 (312)
385 cd06290 PBP1_LacI_like_9 Ligan  26.5      46  0.0012   14.1   4.3   29   92-121     3-31  (265)
386 COG0131 HisB Imidazoleglycerol  26.4      20 0.00052   16.6   0.2   23  281-304    72-94  (195)
387 cd01171 YXKO-related B.subtili  26.4      47  0.0012   14.1   3.5   30  109-138    69-103 (254)
388 pfam10563 CdCA1 Cadmium carbon  26.3      35  0.0009   14.9   1.4   35  218-252     5-39  (209)
389 cd00008 53EXOc 5'-3' exonuclea  26.1      25 0.00063   16.0   0.6   26  122-148    33-58  (240)
390 COG2235 ArcA Arginine deiminas  26.0      26 0.00066   15.9   0.7   11  208-218   166-176 (409)
391 cd00379 Ribosomal_L10_P0 Ribos  25.9      47  0.0012   14.0   3.7   82  207-292    19-115 (155)
392 PRK03803 murD UDP-N-acetylmura  25.8      48  0.0012   14.0   6.0   27  114-140   105-136 (448)
393 cd06273 PBP1_GntR_like_1 This   25.5      48  0.0012   14.0   4.7   12  109-120    19-30  (268)
394 PRK13235 nifH nitrogenase redu  25.5      48  0.0012   14.0   2.7   57  203-260    27-91  (274)
395 COG0052 RpsB Ribosomal protein  25.5      48  0.0012   14.0   2.5   31  246-284   156-186 (252)
396 PRK08818 prephenate dehydrogen  25.5      48  0.0012   14.0   2.0   29   34-65    100-128 (373)
397 COG3340 PepE Peptidase E [Amin  25.1      49  0.0012   13.9   2.8   47   91-140    61-107 (224)
398 cd03145 GAT1_cyanophycinase Ty  25.1      49  0.0012   13.9   5.0   89  204-294    28-134 (217)
399 PRK09482 xni exonuclease IX; P  25.1      49  0.0013   13.9   3.4   21  128-148    35-55  (256)
400 KOG3323 consensus               24.9      49  0.0013   13.9   2.2   24  366-391    92-115 (149)
401 COG1935 Uncharacterized conser  24.8      50  0.0013   13.9   2.9   41  213-253     7-48  (122)
402 TIGR01465 cobM_cbiF precorrin-  24.5      32 0.00081   15.3   0.9   85  206-293    72-171 (252)
403 cd06280 PBP1_LacI_like_4 Ligan  24.5      50  0.0013   13.8   3.2   27   92-119     3-29  (263)
404 COG1671 Uncharacterized protei  24.5      18 0.00046   17.0  -0.4   69  213-285    11-82  (150)
405 PRK00750 lysK lysyl-tRNA synth  24.4      50  0.0013   13.8   1.9   21   37-73     29-49  (513)
406 pfam04187 DUF399 Protein of un  24.4      50  0.0013   13.8   2.3   27   90-116    13-39  (213)
407 KOG4328 consensus               24.4      46  0.0012   14.1   1.7   54  200-253   204-261 (498)
408 PRK03967 histidinol-phosphate   24.2      51  0.0013   13.8   4.5   54  223-278   111-170 (337)
409 PRK05990 precorrin-2 C(20)-met  24.2      28 0.00071   15.6   0.6   51  205-256    98-161 (241)
410 PRK05948 precorrin-2 methyltra  24.1      27 0.00069   15.7   0.5   57  205-261    92-163 (238)
411 cd04865 LigD_Pol_like_2 LigD_P  24.0      49  0.0013   13.9   1.8   55  218-275    73-129 (228)
412 smart00475 53EXOc 5'-3' exonuc  23.9      33 0.00085   15.1   0.9   26  122-148    32-57  (259)
413 pfam01702 TGT Queuine tRNA-rib  23.8      52  0.0013   13.7   4.1   69  238-306    73-145 (238)
414 cd00532 MGS-like MGS-like doma  23.7      52  0.0013   13.7   3.9   66  217-282    32-104 (112)
415 PRK09615 ggt gamma-glutamyltra  23.7      47  0.0012   14.0   1.7   14  279-292   422-435 (581)
416 PRK03379 vitamin B12-transport  23.7      52  0.0013   13.7   2.4   78   40-142    44-125 (265)
417 cd06287 PBP1_LacI_like_8 Ligan  23.5      52  0.0013   13.7   4.2   25  268-292   167-191 (269)
418 COG3243 PhaC Poly(3-hydroxyalk  23.4      35 0.00089   15.0   0.9   81  208-296   120-201 (445)
419 COG4586 ABC-type uncharacteriz  23.3      53  0.0013   13.7   2.9   53  204-256   173-234 (325)
420 COG2875 CobM Precorrin-4 methy  23.3      47  0.0012   14.1   1.6   93  213-313    89-190 (254)
421 pfam06511 IpaD Invasion plasmi  23.3      53  0.0013   13.7   2.2   19  378-396   311-329 (337)
422 cd04861 LigD_Pol_like LigD_Pol  23.2      49  0.0012   13.9   1.6   55  218-275    72-128 (227)
423 pfam08918 PhoQ_Sensor PhoQ Sen  23.2      49  0.0013   13.9   1.7   76  112-225   102-177 (180)
424 PRK11248 tauB taurine transpor  23.0      41   0.001   14.5   1.2   52  206-259   147-209 (255)
425 COG4825 Uncharacterized membra  22.8      54  0.0014   13.6   3.1  186   11-256   102-302 (395)
426 pfam09998 DUF2239 Uncharacteri  22.8      54  0.0014   13.6   2.1   42   90-140    72-113 (173)
427 cd02070 corrinoid_protein_B12-  22.8      54  0.0014   13.6   2.4   84  212-299    96-188 (201)
428 PRK09604 putative DNA-binding/  22.7      51  0.0013   13.8   1.7   48  246-293    72-121 (335)
429 PTZ00340 O-sialoglycoprotein e  22.6      54  0.0014   13.6   1.8   46  246-291    77-124 (348)
430 PRK13606 LPPG:FO 2-phospho-L-l  22.3      55  0.0014   13.6   3.4   38  246-285   186-226 (309)
431 cd02065 B12-binding_like B12 b  22.1      56  0.0014   13.5   2.8   39  218-256    18-60  (125)
432 TIGR01354 cyt_deam_tetra cytid  22.1      56  0.0014   13.5   2.9   72  204-281    19-109 (135)
433 PRK13984 putative oxidoreducta  21.9      56  0.0014   13.5   3.4   40  221-261   341-383 (604)
434 PRK07337 aminotransferase; Val  21.7      57  0.0014   13.5   3.7   13  247-260   164-176 (388)
435 cd01142 TroA_e Periplasmic bin  21.5      57  0.0015   13.4   1.8   21  236-256   209-229 (289)
436 pfam01921 tRNA-synt_1f tRNA sy  21.5      50  0.0013   13.8   1.4   21   37-73     19-39  (355)
437 PRK12775 putative trifunctiona  21.5      57  0.0015   13.4   3.2   42  221-262   490-535 (993)
438 PRK01213 phosphoribosylformylg  21.5      55  0.0014   13.6   1.6   40   20-76    149-188 (736)
439 KOG1907 consensus               21.5      44  0.0011   14.3   1.1   88  203-294  1056-1164(1320)
440 cd06275 PBP1_PurR Ligand-bindi  21.5      57  0.0015   13.4   3.6   12  379-390   238-249 (269)
441 PRK01917 hemerythrin family pr  21.4      57  0.0014   13.5   1.7   14  219-232   124-137 (142)
442 TIGR01922 purO_arch IMP cycloh  21.4      56  0.0014   13.5   1.7   71  221-311    31-113 (209)
443 cd00674 LysRS_core_class_I Thi  21.4      56  0.0014   13.5   1.7   22   36-73     18-39  (354)
444 PRK06425 histidinol-phosphate   21.4      58  0.0015   13.4   3.0   35  225-260    98-135 (332)
445 TIGR01735 FGAM_synt phosphorib  21.2      42  0.0011   14.3   1.0  166  119-294  1015-1234(1401)
446 COG0615 TagD Cytidylyltransfer  21.1      58  0.0015   13.4   2.6   23  234-256    74-96  (140)
447 PRK08574 cystathionine gamma-s  21.1      58  0.0015   13.4   4.4   16  374-389   366-381 (384)
448 cd07062 Peptidase_S66_mccF_lik  20.9      59  0.0015   13.4   2.2   59   49-125    59-122 (308)
449 COG0159 TrpA Tryptophan syntha  20.8      59  0.0015   13.4   3.8   36  208-243   126-164 (265)
450 PRK12809 putative oxidoreducta  20.8      59  0.0015   13.4   3.2   40  221-261   368-410 (639)
451 PRK06848 hypothetical protein;  20.8      59  0.0015   13.3   2.5   12  279-292    95-106 (139)
452 PTZ00170 D-ribulose-5-phosphat  20.7      59  0.0015   13.3   5.3   25  209-233   173-197 (224)
453 TIGR01087 murD UDP-N-acetylmur  20.7      59  0.0015   13.3   4.6   38  108-146    96-142 (476)
454 TIGR03351 PhnX-like phosphonat  20.6      59  0.0015   13.3   7.5   32  114-147    80-111 (220)
455 pfam07801 DUF1647 Protein of u  20.5      60  0.0015   13.3   3.6   48  206-253    90-142 (142)
456 PRK12769 putative oxidoreducta  20.4      60  0.0015   13.3   3.4   39  222-261   386-427 (654)
457 PTZ00254 40S ribosomal protein  20.4      60  0.0015   13.3   2.5   33  245-285   117-149 (242)
458 cd02069 methionine_synthase_B1  20.3      60  0.0015   13.3   2.7   41  212-254   102-147 (213)
459 COG2984 ABC-type uncharacteriz  20.3      60  0.0015   13.3   2.6  115  202-321   157-296 (322)
460 KOG1252 consensus               20.3      45  0.0012   14.2   1.0   60  221-280   144-215 (362)
461 pfam06520 consensus             20.2      57  0.0014   13.5   1.5   70   33-126     8-80  (186)
462 TIGR01992 PTS-IIBC-Tre PTS sys  20.2      25 0.00065   15.9  -0.3   34  276-314   198-237 (489)
463 PRK10953 cysJ sulfite reductas  20.2      61  0.0016   13.3   3.4   37  107-143   127-180 (599)
464 pfam03446 NAD_binding_2 NAD bi  20.1      36 0.00092   14.8   0.5   27  207-233     3-30  (163)
465 TIGR00551 nadB L-aspartate oxi  20.0      33 0.00085   15.1   0.3   30  355-384   269-300 (546)
466 PRK05568 flavodoxin; Provision  20.0      61  0.0016   13.2   3.0   33  218-252    21-54  (142)

No 1  
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00  E-value=0  Score=1236.27  Aligned_cols=370  Identities=47%  Similarity=0.784  Sum_probs=350.3

Q ss_pred             EEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHH---------CCCCC
Q ss_conf             689972898799997567624888898537888876014161425617321689736845882342---------04653
Q gi|254780420|r   14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDF---------ESISR   84 (396)
Q Consensus        14 A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~---------ES~~~   84 (396)
                      |+|+|||||+|.|+|||++++++||||||||||||||+||||||+|||||||||+|||||||++|+         ||   
T Consensus         1 A~LvLeDGt~f~G~sFGa~~~~~GE~VFnTgMTGYQE~lTDPSY~GQIvv~TyP~IGNyG~n~~d~rDe~~LkYfES---   77 (383)
T TIGR01368         1 AYLVLEDGTVFEGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYGVNDEDARDELGLKYFES---   77 (383)
T ss_pred             CEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEECHHHCCHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEE---
T ss_conf             97781378777888845666548889883689774203206200323776068752431478035200002303432---


Q ss_pred             CC-CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf             33-21023666404654434552417989999742783211257689999998539842366327654589789888774
Q gi|254780420|r   85 KN-FKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAK  163 (396)
Q Consensus        85 ~~-~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~  163 (396)
                       . +|+|+|+||||++..+|||||.+||++||++++||||+||||||||||||++|+|+|+|++++   .+.++++++++
T Consensus        78 -~~~i~v~G~vv~e~~~~~Snwra~~SL~~~L~~~~ipgI~GvDTRaLv~~iR~~G~m~g~I~~~~---~~~~~~~~~~~  153 (383)
T TIGR01368        78 -KGKIHVKGLVVRELSDRYSNWRATESLDQFLKEHGIPGIYGVDTRALVKKIREKGTMKGVISTED---SNDEELVEKAK  153 (383)
T ss_pred             -CCEEEEEEEEEECCCCCCCHHHHHCCHHHHHHHCCCEEEECCCHHHHHHHHHHCCCEEEEEEECC---CCHHHHHHHHH
T ss_conf             -88348999985412367871556504899998569847304577999999863585478996067---67035677865


Q ss_pred             -HCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf             -1588743210110133332111686534454344346777771499996796410232222202454133046574464
Q gi|254780420|r  164 -NWSGLKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDI  242 (396)
Q Consensus       164 -~~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i  242 (396)
                       ..|.+.+.||+++|||+++|.|....|...........++.+++|||||||+|+||||+|.+|||+|+||||++++++|
T Consensus       154 f~~p~~~~~nLv~~Vst~~~~~~~~~~~~~~~~~~~~~~g~~~~~Vv~~DfG~K~nIlr~L~~rG~~v~vVP~~~~~~~i  233 (383)
T TIGR01368       154 FESPDIDGINLVAEVSTKEPYTWGQGTWNLWKFFVAKRNGKKPLRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEI  233 (383)
T ss_pred             HHCCCCCCCCCCCCEECCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf             42467577652010011465560688641664322113689735999985588755898997669879996789988999


Q ss_pred             HHCCCCEEEECCCCCCC-CCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEE
Q ss_conf             41357889985888884-10112110122210257863478610058878752854466776752101123477897099
Q gi|254780420|r  243 MSLQPDGVLLSNGPGDP-AVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE  321 (396)
Q Consensus       243 ~~~~pdgi~lSnGPGdP-~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~  321 (396)
                      ++++||||||||||||| +.+.. .++.++++++.++|||||||||||||||+||+|+||||||||.||||+|+.||||+
T Consensus       234 ~~~~PDGiflSNGPGDPH~~~~~-~i~~~~~l~~~~~P~fGICLGHQllALA~Ga~TyKlKFGHRG~NhPV~~~~~g~v~  312 (383)
T TIGR01368       234 KKYNPDGIFLSNGPGDPHAAVEP-AIETVRELLEAKIPIFGICLGHQLLALAFGAKTYKLKFGHRGGNHPVKDLRTGRVE  312 (383)
T ss_pred             HHHCCCEEEEECCCCCCHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCCCEEE
T ss_conf             86578889990879880567899-99999999844897100266689999973887000465678875131442798799


Q ss_pred             EECCCCCEEEEHHHCC-CCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9614576157034369-982899998899808726867997789834878877670016899999999997
Q gi|254780420|r  322 IVSMNHGFAIDASSLP-AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       322 iTsqNHg~~v~~~slp-~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |||||||||||++||+ .+|+|||+|+||+|||||+|+++|+|||||||||+||||||.||||+|+++|++
T Consensus       313 ITsQNHGyAVD~~sl~~~~~~~th~nLNDgt~EG~~h~~~P~fSVQyHPEA~PGPhD~~~lFd~F~~~~~~  383 (383)
T TIGR01368       313 ITSQNHGYAVDEESLLAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLIKK  383 (383)
T ss_pred             EEEECCCEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99706871257535578853899983597933153005878667700688888700237999999999819


No 2  
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00  E-value=0  Score=1131.69  Aligned_cols=376  Identities=43%  Similarity=0.706  Sum_probs=351.4

Q ss_pred             CCCCEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCE
Q ss_conf             78966899728987999975676248888985378888760141614256173216897368458823420465333210
Q gi|254780420|r   10 KKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKG   89 (396)
Q Consensus        10 ~~~~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~   89 (396)
                      +-.+|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||+|.+|+||    .++|
T Consensus         4 ~~~~A~LvLedG~~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIl~fTyP~IGNyGin~~d~ES----~~i~   79 (383)
T CHL00197          4 KMIPAILVLEDGTVYRGWSFSNPITSIGEVVFNTGMTGYQEIMTDPSYNEQIVTFTYPEIGNTGINLDDIES----VKIQ   79 (383)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCHHCCC----CCCC
T ss_conf             567689996699989879748777677899997997876820058452344022166773460799212035----6764


Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             23666404654434552417989999742783211257689999998539842366327654589789888774158874
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLK  169 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~  169 (396)
                      ++|+|||+++..||||||+.||++||++++||||+|||||||||+||++|+|+|+|+++   +.+.+++.++++++++++
T Consensus        80 ~~G~Ivre~~~~~Sn~rs~~sL~~wL~~~~IpgI~gIDTRaLTk~IR~~G~m~g~I~~~---~~~~~~l~~~~~~~~~~~  156 (383)
T CHL00197         80 IKGIIAKNISPSSSNWRSQESLVSYLKRHKIPFIFGIDTRALVRHLRRFGTMNGCISNQ---NLNLSYLEAKIKELPSME  156 (383)
T ss_pred             EEEEEECCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHCCCCC
T ss_conf             68999456667888532115899999975986264787899999999649824999079---899899999987489965


Q ss_pred             CCCHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCC
Q ss_conf             3210110133332111686534454--34434677777149999679641023222220245413304657446441357
Q gi|254780420|r  170 GAELAKHVTVSQRRDWSEKIWKWGE--ETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQP  247 (396)
Q Consensus       170 ~~dL~~~Vs~~~~~~~~~~~~~~~~--~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~p  247 (396)
                      +.||+++|||+++|.|.+.......  .......++.++|||+||||+|+||||+|.+|||+|+||||++++++|++++|
T Consensus       157 ~~dLv~~VSt~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~VvviD~GiK~nILr~L~~~g~~v~VvP~~~~~~~I~~~~P  236 (383)
T CHL00197        157 GLDLAPSVTTSSYYEWDEPSHPKWFYLADNKRPHSSYPLRIIVIDFGVKYNILRRLKSFGCEITIVPATSTYQDIMAYQP  236 (383)
T ss_pred             CCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHCCCC
T ss_conf             78542485168877706887654321343444588887459999677718899999978998999899985113425688


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHCC-CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCC
Q ss_conf             8899858888841011211012221025-786347861005887875285446677675210112347789709996145
Q gi|254780420|r  248 DGVLLSNGPGDPAVTSVYSSPIICKLVD-SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN  326 (396)
Q Consensus       248 dgi~lSnGPGdP~~~~~~~~~~~~~~~~-~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqN  326 (396)
                      ||||||||||||+.+.. .++.++++++ +++|||||||||||||+|+||+|+||||||||+||||+  .||||||||||
T Consensus       237 DGIfLSNGPGDP~~~~~-~i~~i~~li~~~~iPifGICLGHQlLalA~GakT~KmkfGHrG~NhPV~--~t~kv~ITSQN  313 (383)
T CHL00197        237 DGILLSNGPGDPSTVHY-GIKTVKKLIKKANIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSG--LNQQVEITSQN  313 (383)
T ss_pred             CEEEECCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCEEEEECC
T ss_conf             88997899999789899-9999999996489978995588999999739837566888779886601--58757996278


Q ss_pred             CCEEEEHHHCCCC-CEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7615703436998-28999988998087268679977898348788776700168999999999973578
Q gi|254780420|r  327 HGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTM  395 (396)
Q Consensus       327 Hg~~v~~~slp~~-~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~  395 (396)
                      |||+||++|||.+ +++||+|+||+|||||+|+++|+|||||||||+|||||+.||||+|++||+++|+.
T Consensus       314 HGyaVd~~sl~~~~~~vt~~nlnD~tvEG~~~~~~p~fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~~  383 (383)
T CHL00197        314 HGFAVNAESLAKNKVYVTHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIMKHSKSS  383 (383)
T ss_pred             CCEEECCCCCCCCCCEEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             7617674447887318999938889614869889987887748898989873088999999999976189


No 3  
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00  E-value=0  Score=1114.10  Aligned_cols=352  Identities=55%  Similarity=0.932  Sum_probs=339.6

Q ss_pred             CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf             66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r   13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG   92 (396)
Q Consensus        13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g   92 (396)
                      +|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||+|.+|+||    .++|++|
T Consensus         4 ka~LiLedGt~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIl~fTyP~IGNyGv~~~d~ES----~~~~~~G   79 (355)
T PRK12564          4 KAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNYGVNREDFES----DRIHAKG   79 (355)
T ss_pred             CEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHCC----CCCCEEE
T ss_conf             379995699999889807776578899997998765700228776673000077675153889457155----6755106


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             66404654434552417989999742783211257689999998539842366327654589789888774158874321
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAE  172 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~d  172 (396)
                      +|||+++..|||||+++||++||++++||||+|||||||||+||++|+|+|+|++++     .+++++++++++.+++.|
T Consensus        80 ~Iv~e~~~~~s~~~s~~sL~~~L~~~~IpgI~gVDTRaLtr~iR~~G~m~g~I~~~~-----~~~~~~~~~~~~~~~~~d  154 (355)
T PRK12564         80 LIVRELSRIPSNWRSEMSLDDYLKEHGIPGISGIDTRALTRKLREKGAMNGVIATGD-----LEDLLEKARAFPGLEGLD  154 (355)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCEEEEEECCC-----HHHHHHHHHHCCCCCCCC
T ss_conf             884146778884011069999999779842852538999999986598059994598-----599999998278964566


Q ss_pred             HHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf             01101333321116865344543443467777714999967964102322222024541330465744644135788998
Q gi|254780420|r  173 LAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       173 L~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l  252 (396)
                      |+++|||+++|.|.                +.++|||+||||+|+||||+|.+|||+|+||||++++++|++++||||||
T Consensus       155 lv~~VS~~~~~~~~----------------~~~~~V~viD~GvK~nIlr~L~~rg~~v~VvP~~~~~~~I~~~~pDGIfl  218 (355)
T PRK12564        155 LAKEVSTKEPYPWP----------------GGGYHVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFL  218 (355)
T ss_pred             CHHHCCCCCCEECC----------------CCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCEEEE
T ss_conf             55132767767727----------------99718999937873889999998798699968978765764148888996


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEE
Q ss_conf             58888841011211012221025786347861005887875285446677675210112347789709996145761570
Q gi|254780420|r  253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAID  332 (396)
Q Consensus       253 SnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~  332 (396)
                      |||||||+.+. ..++.+++++++++||||||||||+||+|+||+|+||||||||+||||+|+.|+|||||||||||+||
T Consensus       219 SNGPGDP~~~~-~~i~~ik~li~~~~PifGICLGHQllalA~Ga~t~Km~fGHrG~NhPV~~l~t~~v~iTSQNHGyaVd  297 (355)
T PRK12564        219 SNGPGDPAALD-YAIEMIKELLEGKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLETGKVEITSQNHGFAVD  297 (355)
T ss_pred             CCCCCCHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEECCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEC
T ss_conf             79999968879-99999999852698789988879999997198442055565789977335578739997167422866


Q ss_pred             HHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             3436998289999889980872686799778983487887767001689999999999
Q gi|254780420|r  333 ASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       333 ~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      ++|||++|++||+|+||+|||||+|+++|+|||||||||+|||||+.||||+|++||+
T Consensus       298 ~~sl~~~~~vt~~nlnDgtvEGi~h~~~p~fSVQfHPEa~pGP~D~~~lFd~F~~~i~  355 (355)
T PRK12564        298 EDSLPENLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDAAYLFDEFVELME  355 (355)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             6658987399999389996721788899878972188999899753889999999759


No 4  
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=1097.84  Aligned_cols=366  Identities=52%  Similarity=0.860  Sum_probs=349.0

Q ss_pred             CCEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf             96689972898799997567624888898537888876014161425617321689736845882342046533321023
Q gi|254780420|r   12 PTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAV   91 (396)
Q Consensus        12 ~~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~   91 (396)
                      .+|+|+||||++|+|++|||++++.||||||||||||||+||||||+|||||||||||||||+|.+|+||    .+++++
T Consensus         2 ~~a~L~LeDGtvf~G~~fGA~g~~~GEvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~d~Es----~~i~~~   77 (368)
T COG0505           2 MKAYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDEDFES----DRIHAA   77 (368)
T ss_pred             CCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCC----CCCEEE
T ss_conf             8449996679888768668887577899996787765311568764855899714654302678211124----673288


Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             66640465443455241798999974278321125768999999853984236632765458978988877415887432
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGA  171 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~  171 (396)
                      |+|||+++..+||||+++||++||++++||||+|||||+|||+||++|+|+|+|++++  ..+.+.+..++++|+.+.+.
T Consensus        78 G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~--~~~~~~~~~~~~~~~~~~~~  155 (368)
T COG0505          78 GLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGP--ELDPAKLLERARAFPGILGT  155 (368)
T ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHCCCCCCC
T ss_conf             9997236666575230058999999769977505518999999986697313761376--66868888887623898766


Q ss_pred             CHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEE
Q ss_conf             10110133332111686534454344346777771499996796410232222202454133046574464413578899
Q gi|254780420|r  172 ELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVL  251 (396)
Q Consensus       172 dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~  251 (396)
                      ||+++||++++|.|..  +..        ....+++||++|||+|+||||+|.+|||+|+||||++++++|++++|||||
T Consensus       156 dlv~~VSt~~~~~~~~--~~~--------~~~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGif  225 (368)
T COG0505         156 DLVKEVSTKEPYTWPG--LNG--------GGEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIF  225 (368)
T ss_pred             CCCCEEECCCCEECCC--CCC--------CCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEE
T ss_conf             5400565588444366--566--------777776799997673177999999779849997698999999851899799


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEE
Q ss_conf             85888884101121101222102578634786100588787528544667767521011234778970999614576157
Q gi|254780420|r  252 LSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAI  331 (396)
Q Consensus       252 lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v  331 (396)
                      ||||||||+.++ ..++.+++++..+|||||||||||+||||+||+|+||||||||+||||+|+.||||+||||||||||
T Consensus       226 lSNGPGDP~~~~-~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaV  304 (368)
T COG0505         226 LSNGPGDPAPLD-YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAV  304 (368)
T ss_pred             EECCCCCHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEC
T ss_conf             748998806778-9999999986468983788688899998667864320368877896763165880899946886013


Q ss_pred             EHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             034369982899998899808726867997789834878877670016899999999997357
Q gi|254780420|r  332 DASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKT  394 (396)
Q Consensus       332 ~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~  394 (396)
                      |+++++...++||+|+||+|+||++|+++|+|||||||||+|||||+.||||+|++||++.|.
T Consensus       305 d~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~  367 (368)
T COG0505         305 DEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAAKK  367 (368)
T ss_pred             CHHHCCCCCEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             822327776058981799970024527986378714899998986447799999999987524


No 5  
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00  E-value=0  Score=1096.96  Aligned_cols=353  Identities=41%  Similarity=0.716  Sum_probs=327.6

Q ss_pred             CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf             66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r   13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG   92 (396)
Q Consensus        13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g   92 (396)
                      +|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||+|.+|+||    .++|++|
T Consensus         2 ka~L~LeDGt~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIv~~TyP~IGNyGvn~~d~ES----~~i~~~G   77 (356)
T PRK12838          2 KAYLILEDGTTFEGELFGAPIDVTGELVFNTGMTGYQEVLTDPSYKGQIIVFTYPLIGNYGINASDYES----KQPTVKG   77 (356)
T ss_pred             CEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCC----CCCEEEE
T ss_conf             279996799999879707777688999996997876710158651234233166675343889157055----5750428


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             66404654434552417989999742783211257689999998539842366327654589789888774158874321
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAE  172 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~d  172 (396)
                      +|||+++..||||||++||++||++++||||+|||||||||+||++|+|+|+|++..+. ...+++.      ......+
T Consensus        78 ~Ivre~~~~~Sn~rs~~sL~~~L~~~~IpgI~gIDTRaLTr~IR~~G~m~g~I~~~~~~-~~~~~~~------~~~~~~~  150 (356)
T PRK12838         78 VIVYEAAREGSHYRAKQSLDDYLKEKNIPGISGVDTRALVKHLREKGTMKASITTTDDE-HAFDQIQ------ALVLPFN  150 (356)
T ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHCC------CCCCCCC
T ss_conf             99513578888555647999999976985274464899999998658814899358876-6500101------4112456


Q ss_pred             HHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf             01101333321116865344543443467777714999967964102322222024541330465744644135788998
Q gi|254780420|r  173 LAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       173 L~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l  252 (396)
                      ++..||++++|.|                ++.++|||+||||+|+||||+|.+|||+|+||||++++++|++++||||||
T Consensus       151 ~~~~vs~~~~~~~----------------~~~~~~V~viD~GvK~nIlr~L~~rg~~V~VvP~~~~~~~i~~~~pDGifl  214 (356)
T PRK12838        151 VQAVVSTKEPYAA----------------GNGGKHVALIDFGLKHSILRSLSKRGCNVTVLPYNASLEDIKNLNPDGIVL  214 (356)
T ss_pred             CCEEEECCCCEEC----------------CCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEE
T ss_conf             6348955764887----------------999757999958836999999997898899989988754023249748994


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEE
Q ss_conf             58888841011211012221025786347861005887875285446677675210112347789709996145761570
Q gi|254780420|r  253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAID  332 (396)
Q Consensus       253 SnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~  332 (396)
                      |||||||+.+.. .++.+++++ +++||||||||||+||+|+||+|+||||||||+||||+|+.|||||||||||||+||
T Consensus       215 SNGPGDP~~~~~-~i~~vr~l~-~~~PifGICLGHQllalA~Gakt~KmkfGHrG~NhPV~~~~tgkv~ITSQNHGyaVd  292 (356)
T PRK12838        215 SNGPGDPKELQP-YLPTIKDLA-SSYPILGICLGHQLIALALGAETYKLPFGHRGANHPVIDLATGRVWMTSQNHGYVVD  292 (356)
T ss_pred             CCCCCCHHHHHH-HHHHHHHHH-CCCCEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCEEC
T ss_conf             389989688788-999999997-498889974889999997097486415566887826477689948997268761677


Q ss_pred             HHHCCC-CCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             343699-82899998899808726867997789834878877670016899999999997357
Q gi|254780420|r  333 ASSLPA-GLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKT  394 (396)
Q Consensus       333 ~~slp~-~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~  394 (396)
                      ++|||. +|++||+|+||+|||||+|+++|+|||||||||+|||||+.||||+|++||+++|.
T Consensus       293 ~~sl~~~~~~vt~~nlnD~tveGi~~~~~p~fsVQfHPEa~PGP~D~~~lF~~F~~~~~~~k~  355 (356)
T PRK12838        293 EDSIDEKQLSVTFFNLNDGSIEGLRHKKLPVLSVQFHPEAHPGPHDAEYIFDEFLEMMGEARR  355 (356)
T ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             676898865999990899966107988998688712889998987438899999999998736


No 6  
>KOG0370 consensus
Probab=100.00  E-value=0  Score=893.92  Aligned_cols=348  Identities=39%  Similarity=0.666  Sum_probs=327.6

Q ss_pred             EEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCH--HH------HCCCCCC
Q ss_conf             689972898799997567624888898537888876014161425617321689736845882--34------2046533
Q gi|254780420|r   14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNS--ED------FESISRK   85 (396)
Q Consensus        14 A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~--~d------~ES~~~~   85 (396)
                      +.|+||||++|.|++||+++.+.||+||||||+||+|+||||||+||||+||||+|||||++.  .|      +||    
T Consensus         3 s~L~LeDGsv~~G~SFGA~~svaGE~VFqTgmvGYpEslTDPSY~gQiLv~T~PlIGNyGVP~~~~DE~l~~~fES----   78 (1435)
T KOG0370           3 STLVLEDGSVLPGYSFGAPKSVAGELVFQTGMVGYPESLTDPSYKGQILVFTYPLIGNYGVPPDARDEGLLKHFES----   78 (1435)
T ss_pred             EEEEECCCCEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----
T ss_conf             2799625875035235888751357999627767751137925154389983244157899987433234343326----


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC
Q ss_conf             32102366640465443455241798999974278321125768999999853984236632765458978988877415
Q gi|254780420|r   86 NFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNW  165 (396)
Q Consensus        86 ~~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~  165 (396)
                      .++|+.|+||++++..+|||++.+||.+||++++||||+|||||+|||+|||+|+|.|.|..+.+..           .|
T Consensus        79 ~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTRaLtk~lReqGSmLgkl~~e~~~~-----------~~  147 (1435)
T KOG0370          79 GQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTRALTKKLREQGSMLGKLSIEKSPV-----------LF  147 (1435)
T ss_pred             CCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC-----------CC
T ss_conf             9558999984240665124121402999997659984226548999999986476236898337887-----------41


Q ss_pred             CCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC
Q ss_conf             88743210110133332111686534454344346777771499996796410232222202454133046574464413
Q gi|254780420|r  166 SGLKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSL  245 (396)
Q Consensus       166 ~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~  245 (396)
                      .+++..+|+++||+++++.|.               .++..+|+++|||+|+|++|+|.+|||+|+||||+.++++.   
T Consensus       148 vdpn~~nLvs~VS~Kep~~y~---------------~Gk~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~---  209 (1435)
T KOG0370         148 VDPNKRNLVSQVSTKEPKVYG---------------DGKSLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKE---  209 (1435)
T ss_pred             CCCCCCCCHHHHEECCCEEEC---------------CCCCCEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCC---
T ss_conf             287765420011122635870---------------78641799735674189999999849569990377622012---


Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECC
Q ss_conf             57889985888884101121101222102578634786100588787528544667767521011234778970999614
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSM  325 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsq  325 (396)
                      +|||||||||||||+.+.. ....++++++++.||||||||||++|+|.|++|+||||||||+|||+.+..+|+|+||||
T Consensus       210 ~yDGlflSNGPGdPe~~~~-~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~tGrc~ITSQ  288 (1435)
T KOG0370         210 EYDGLFLSNGPGDPELCPL-LVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRATGRCFITSQ  288 (1435)
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCCCEEEEEEC
T ss_conf             5561797279999056589-999999998279985897366699998608744886315567774622003765999815


Q ss_pred             CCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             5761570343699828999988998087268679977898348788776700168999999999973578
Q gi|254780420|r  326 NHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTM  395 (396)
Q Consensus       326 NHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~  395 (396)
                      ||||+||.++||.+|+++|.|+||++.|||.|..+|+|+||||||++|||+|+.|+||.|++++.+.++.
T Consensus       289 NHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst  358 (1435)
T KOG0370         289 NHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKST  358 (1435)
T ss_pred             CCCEEECCCCCCCCCCHHEEECCCCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             7761534532457770320413567773376279872116307867899751399999999998887417


No 7  
>pfam00988 CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain. The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00289. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=100.00  E-value=0  Score=433.86  Aligned_cols=130  Identities=54%  Similarity=0.843  Sum_probs=127.6

Q ss_pred             CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf             66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r   13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG   92 (396)
Q Consensus        13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g   92 (396)
                      +|+|+||||++|+|++||+++.+.||||||||||||||+||||||+|||||||||||||||+|.+|+||    .++|++|
T Consensus         2 ka~L~LedG~~f~G~~fG~~~~~~GEvvFnT~mtGYqE~lTDPSY~gQIl~fT~P~IGNyGin~~d~ES----~~~~~~G   77 (131)
T pfam00988         2 KAYLVLEDGTVFEGESFGAEGEAVGEVVFNTGMTGYQEILTDPSYAGQIVVFTYPLIGNYGINPEDFES----DKPHAKG   77 (131)
T ss_pred             CEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC----CCCCCCE
T ss_conf             379995799999879737776577799997887654403258765774899746640441779743200----4764057


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf             664046544345524179899997427832112576899999985398423663
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIA  146 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~  146 (396)
                      +|||+++..|||||++.+|++||++++||||+|||||+|||+||++|+|+|+|+
T Consensus        78 ~iv~~~~~~~S~~~s~~sL~~~L~~~~IpgI~gIDTRaLt~~iR~~G~~~~~I~  131 (131)
T pfam00988        78 LIVRELSDIPSNWRSEESLDEFLKEHGIPGISGVDTRALTRKLREKGAMKGVIS  131 (131)
T ss_pred             EEECCCCCCCCCHHHHCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEC
T ss_conf             985356657665323359999999779722706618999999986698516849


No 8  
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II.  CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species.  The E.coli enzyme is
Probab=100.00  E-value=0  Score=422.11  Aligned_cols=178  Identities=54%  Similarity=0.958  Sum_probs=170.7

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHH
Q ss_conf             99996796410232222202454133046574464413578899858888841011211012221025786347861005
Q gi|254780420|r  208 VVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGH  287 (396)
Q Consensus       208 IvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGh  287 (396)
                      |+++|||.+|||+|+|+++|++++|+|+++++++|.+++||||+||+|||+|...+. ..+.++++++.++|||||||||
T Consensus         1 i~ilDfGsqy~i~r~lrelg~~~~v~~~~~~~~~i~~~~p~giIlS~GPg~p~~~~~-~~~~~~~~~~~~iPILGIClG~   79 (178)
T cd01744           1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDE-AIKTVRKLLGKKIPIFGICLGH   79 (178)
T ss_pred             CEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHHCC-HHHHHHHHHHCCCCEEEECHHH
T ss_conf             999988749999999998799799993989999998419997998999999577344-4999999974699889981217


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECC
Q ss_conf             88787528544667767521011234778970999614576157034369982899998899808726867997789834
Q gi|254780420|r  288 QLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQY  367 (396)
Q Consensus       288 Q~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQf  367 (396)
                      |+||.++||+++|+++||||.||||++..++++|+|+|||+|+|+++++|.+|++++++++|+++||++|+++|+|||||
T Consensus        80 Q~ia~~~Gg~v~k~~~g~~G~n~pv~~~~~~~~~~~~~~H~~~v~~~~lp~~~~v~a~s~~d~~i~ai~h~~~~i~GVQF  159 (178)
T cd01744          80 QLLALALGAKTYKMKFGHRGSNHPVKDLITGRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQF  159 (178)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf             88998819830015667247871216768883888644755487624589985799964899857999989999999985


Q ss_pred             CCCCCCCCCCHHHHHHHHH
Q ss_conf             8788776700168999999
Q gi|254780420|r  368 HPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       368 HPEa~PGP~D~~~~F~~F~  386 (396)
                      ||||+|||+|+++||++|+
T Consensus       160 HPEs~~~~~~~~~if~nFl  178 (178)
T cd01744         160 HPEASPGPHDTEYLFDEFL  178 (178)
T ss_pred             CCCCCCCCCCCHHHHHHHC
T ss_conf             9979999977489897239


No 9  
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00  E-value=1.3e-42  Score=320.77  Aligned_cols=182  Identities=31%  Similarity=0.558  Sum_probs=155.8

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECCC-CHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--64102322222024541330465-74464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAET-SYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~-~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||++  --+||+|+|+++||+++|+|++. +++++.+.+|||||||||||+|.+... ..++++. +..++||||||
T Consensus         2 iLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~~-~~~~i~~-~~~~iPiLGIC   79 (192)
T PRK05670          2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAGI-SLELIRE-FAGKVPILGVC   79 (192)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHH-HCCCCCEEEEE
T ss_conf             999968986899999999868996999989989999998509898999999999366055-4999997-34699789984


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCC------EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             0058878752854466776752101123477897------0999614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG------TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~------kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+||+++||+++|++.++||.++++....++      .-+.+.++|+++|+..++|++|++++.+ +|+++||++|+
T Consensus        80 lG~Qlia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~lp~~~~v~a~s-~d~~i~a~~~~  158 (192)
T PRK05670         80 LGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGKGIFAGLPNPFTVTRYHSLVVERESLPDCLEVTAWT-DDGEIMGVRHK  158 (192)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEEE-CCCCEEEEEEC
T ss_conf             77899998719738888863637048999899987158888746861120799933479967999997-99719999989


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99778983487887767001689999999999735
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k  393 (396)
                      ++|+||||||||+. ++.++..+|++|++++...|
T Consensus       159 ~~~~~gvQFHPEs~-~t~~G~~il~nFl~~~~g~~  192 (192)
T PRK05670        159 ELPIYGVQFHPESI-LTEHGHKLLENFLELALGAK  192 (192)
T ss_pred             CCCEEEEEECCCCC-CCCCHHHHHHHHHHHHCCCC
T ss_conf             99989996799889-98176999999999751389


No 10 
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00  E-value=4.6e-41  Score=309.78  Aligned_cols=174  Identities=27%  Similarity=0.440  Sum_probs=141.6

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             4999967964--10232222202454133046574464413578899858888841011211012221025786347861
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ||++||+|-+  |||+|+|+++||+++|+|++++++++++ +|||||||||||.|.. . ...+.   +.+.++||||||
T Consensus         1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~i~~-~~dgiilS~GP~~~~~-~-~~~~~---i~~~~iPiLGIC   74 (184)
T PRK00758          1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEEIKA-EPDGIILSGGPEIERA-G-NCEEY---LLELDVPILGIC   74 (184)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH-CCCEEEECCCCCCCCC-C-CHHHH---HHHCCCCEEEEE
T ss_conf             9999989863899999999978992899959898999963-8998998899983332-2-06999---986599889971


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCC------EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             0058878752854466776752101123477897------0999614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG------TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~------kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+||.|+||+++|++++++|.+.....-.+.      .-+...++|++.|.  ++|.++++++.+ +|+.+||++|+
T Consensus        75 lG~Q~l~~~~Gg~v~~~~~~~~G~~~i~~~~~~~lf~~~~~~~~v~~~H~~~v~--~~p~~~~v~a~s-~~~~v~~i~~~  151 (184)
T PRK00758         75 LGHQLIAKAFGGEVGRAEKGEYALVEVEILDEDDILRGLPPEITVWASHADEVK--ELPDGFEILARS-DICEVEAMKHK  151 (184)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEEEE--ECCCCEEEEEEC-CCCCEEEEEEC
T ss_conf             776665876699330276215433689997388751115886378764005899--658715999984-99988999989


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99778983487887767001689999999999
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      ++|+|||||||||+++|+ +..+|++|+++..
T Consensus       152 ~~~i~gvQFHPEs~~t~~-G~~ll~nFl~icg  182 (184)
T PRK00758        152 DKPIYGVQFHPEVSHTEK-GEEIFKNFIKICG  182 (184)
T ss_pred             CCCEEEEEECCCCCCCCC-HHHHHHHHHHHHC
T ss_conf             999999991884799927-8999999999855


No 11 
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00  E-value=7.5e-41  Score=308.25  Aligned_cols=185  Identities=25%  Similarity=0.425  Sum_probs=160.1

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||++  --+||+|+|++.|++++|+|++ .+++++.+++||||+||||||+|.+... ..+.++. +.+++||||||
T Consensus         2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~-~~~~~~~-~~~~iPILGIC   79 (195)
T PRK07649          2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI-SMEVIRY-FAGKIPIFGVC   79 (195)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHH-HCCCCCEEEEC
T ss_conf             999958980799999999978997999889968999998419898998899999578476-1467997-52899784302


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCC------EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             0058878752854466776752101123477897------0999614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG------TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~------kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+||+++||+++|++.++||.+.++.+-..+      .-+.+.++|++.|+.+++|++|++++.+ +|+.|||++|+
T Consensus        80 lG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~g~~~~~~v~~yHs~~v~~~~lp~~~~v~a~s-~~~~i~ai~h~  158 (195)
T PRK07649         80 LGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLIVKKETLPDCFEVTAWT-EEGEIMAIRHK  158 (195)
T ss_pred             HHHHHHHHHCCCCEEECCCEEECEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEC-CCCCEEEEEEC
T ss_conf             99999998739728337960764065799889763438888758986161589623578742899994-89978999938


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             99778983487887767001689999999999735788
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC  396 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~~  396 (396)
                      ++|+|||||||||...++ +..||++|++-+.+..+.|
T Consensus       159 ~~pi~GVQFHPEs~~T~~-G~~il~NFl~k~~~~~~~~  195 (195)
T PRK07649        159 TLPIEGVQFHPESIMTSH-GKELLQNFIRKYSPSVTSC  195 (195)
T ss_pred             CCCEEEEEECCCCCCCCC-HHHHHHHHHHHHCCCCCCC
T ss_conf             998899986898889977-6899999998613575679


No 12 
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=100.00  E-value=2e-40  Score=305.23  Aligned_cols=177  Identities=40%  Similarity=0.660  Sum_probs=154.8

Q ss_pred             EEEECC--CCCHHHHHHHHHCCCCEEEECCCCHHHHHH-CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             999679--641023222220245413304657446441-35788998588888410112110122210257863478610
Q gi|254780420|r  209 VCIDYG--IRSNLLRVLSSLGCRITIVGAETSYKDIMS-LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       209 vvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~-~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      ++||||  ..+||+|.|+++|++++|+|++++++++.+ .+|||||||||||+|..... ..++++++++.++|||||||
T Consensus         1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~-~~~~i~~~~~~~~PiLGICl   79 (187)
T pfam00117         1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGG-AIEAIKELRENKIPILGICL   79 (187)
T ss_pred             CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHHHCCCCEEEEEH
T ss_conf             98937863899999999868997999989998699985259998999199861101345-89999999977998999988


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEECC-----CCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf             0588787528544667767521011234778-----97099961457615703436998289999889980872686799
Q gi|254780420|r  286 GHQLLGLALGAQTVKMYQGHHGVNHPVKNIS-----NGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ  360 (396)
Q Consensus       286 GhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~-----t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~  360 (396)
                      |||+|+.++|+++.|++.+|+|.|+++.+-.     ..+.....++|+|.|+++++|+++++++.+.+|+++|+++|+++
T Consensus        80 G~Qll~~~~Gg~v~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~Hs~~v~~~~lp~~~~i~a~s~~~~~i~a~~~~~~  159 (187)
T pfam00117        80 GHQLLALAFGGKVIKAKEPHHGKNSPVGHDKGLFYGLPNVFIVRRYHSYAVDPDTLPDGLEVTAASDNGGEIMAIRHKEN  159 (187)
T ss_pred             HHHHHHHHCCCCCCCCCEEECCEEEEECCCHHHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf             89999997199864431010570489732116442799773777603489986257886299998688871899998899


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             77898348788776700168999999
Q gi|254780420|r  361 PVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       361 ~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                      |+||||||||++.+|++...|++-++
T Consensus       160 ~~~gvQfHPE~~~t~~G~~ll~nfl~  185 (187)
T pfam00117       160 PIFGVQFHPESSLTPGGPELLFNFLI  185 (187)
T ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             89999959977999770489987774


No 13 
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00  E-value=6.2e-40  Score=301.80  Aligned_cols=178  Identities=26%  Similarity=0.460  Sum_probs=151.1

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||||  --+||+|+|+++|++++|+|++ .+++++.+++|||||||||||+|.+... ....+ +.+..++||||||
T Consensus         2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~-~~~~~-~~~~~~iPILGIC   79 (190)
T CHL00101          2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGI-SLDVI-SSYAPTIPILGVC   79 (190)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHH-HHHHCCCCEEEEC
T ss_conf             999978880899999999868998999869989999997079798999799999578576-16899-9971499878973


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCC------EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             0058878752854466776752101123477897------0999614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG------TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~------kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+||.++||++.|++.++||....+....++      ..+.++++|++.|+..++|++|++++.+ +|+++||++|+
T Consensus        80 lG~Q~ia~~~Gg~v~~~~~~~~G~~~~i~~~~~~lf~g~~~~~~~~~~hs~~v~~~~lp~~~~v~a~s-~~~~i~ai~h~  158 (190)
T CHL00101         80 LGHQSIGYVYGGKIIKASKPMHGKTSLIYHNHDDLFQGLPNPFIATRYHSLIIDRENLPSCLEITAWT-EDGLIMACRHK  158 (190)
T ss_pred             HHHHHHHHHCCCEEEECCCEEECCEEEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEEC-CCCCEEEEEEC
T ss_conf             98899988758649978820436247999789875437998848987077999804578987999997-99968999978


Q ss_pred             CCC-EEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             997-7898348788776700168999999999
Q gi|254780420|r  359 DQP-VFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       359 ~~~-~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      ++| +||||||||+.-- .++..++++|+++-
T Consensus       159 ~~~~i~GVQFHPEs~~T-~~G~~il~NFl~la  189 (190)
T CHL00101        159 KYPMLRGIQFHPESILT-EHGQQLLRNFLSLS  189 (190)
T ss_pred             CCCCEEEEEECCCCCCC-CCHHHHHHHHHHHC
T ss_conf             99987999974866999-48699999999860


No 14 
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00  E-value=1e-39  Score=300.30  Aligned_cols=176  Identities=27%  Similarity=0.466  Sum_probs=151.9

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||++  --+||+|+|++.|++++|+|++ .+.+++.+++||+||||||||+|.+... ....++ .+..++||||||
T Consensus         2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~-~~~~i~-~~~~~iPiLGIC   79 (187)
T PRK08007          2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI-SLDVIR-HYAGRLPILGVC   79 (187)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHH-HHCCCCCEEEEC
T ss_conf             999968981899999999877997999938989999998429897999999999589084-046899-753899889987


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCC------EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             0058878752854466776752101123477897------0999614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG------TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~------kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+||.++||++++++.++||.++++.+..++      .-+..+++|++.|+..++|+++++++.+ +|+.+||++|+
T Consensus        80 lG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~~~~~~v~~~hs~~v~~~~lp~~~~v~a~~-~~~~v~ai~~~  158 (187)
T PRK08007         80 LGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSLPECFEVTAWS-ETREIMGIRHR  158 (187)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEC-CCCCEEEEEEC
T ss_conf             99999999809807347832015206999899862678998737897557888647689815999992-99868999989


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99778983487887767001689999999
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      ++|+|||||||||.--+ ++..++++|+.
T Consensus       159 ~~~~~GVQFHPEs~~T~-~G~~il~NFl~  186 (187)
T PRK08007        159 QWDLEGVQFHPESILSE-QGHQLLANFLH  186 (187)
T ss_pred             CCCEEEEEECCCCCCCC-CHHHHHHHHHC
T ss_conf             99989999589779996-77899999857


No 15 
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate.  GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP.  GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00  E-value=1.7e-39  Score=298.72  Aligned_cols=172  Identities=23%  Similarity=0.435  Sum_probs=145.0

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             999967964--102322222024541330465744644135788998588888410112110122210257863478610
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      |++||||.+  +||+|.|+++|++++|+|++++++++..++|||||||||||+|.+..  ...+.+++++.++|||||||
T Consensus         1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~~~~~~~~~~dgvils~GP~~~~~~~--~~~~~~~i~~~~~PilGICl   78 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED--APRVDPEIFELGVPVLGICY   78 (181)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCC--CCHHHHHHHHCCCCEEEEHH
T ss_conf             7999998638999999999779949999699998999734989899899999855579--83330999847999999859


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEE-------EEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             05887875285446677675210112347789709-------99614576157034369982899998899808726867
Q gi|254780420|r  286 GHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV-------EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       286 GhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv-------~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      |||+||+|+||+++|++.+++|.+..... ..+.+       ...-++|++.|+  ++|+++++++.+. |+.+||++|+
T Consensus        79 G~Qll~~a~Gg~v~~~~~~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~H~~~v~--~~p~~~~~~a~s~-~~~v~~~~~~  154 (181)
T cd01742          79 GMQLIAKALGGKVERGDKREYGKAEIEID-DSSPLFEGLPDEQTVWMSHGDEVV--KLPEGFKVIASSD-NCPVAAIANE  154 (181)
T ss_pred             HHHHHHHHCCCCEEECCCCEECCEEEEEE-CCCCCCCCCCCCEEEEEECCEEEE--ECCCCEEEEEECC-CCEEEEEEEC
T ss_conf             99999987597602189855364478981-262100588985678856362998--4587307999959-9409999989


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9977898348788776700168999999
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                      ++|+||||||||++++|+ +..|+++|+
T Consensus       155 ~~~i~gvQfHPEs~~s~~-G~~il~NFl  181 (181)
T cd01742         155 EKKIYGVQFHPEVTHTEK-GKEILKNFL  181 (181)
T ss_pred             CCCEEEEEECCCCCCCCC-HHHHHHHHC
T ss_conf             999899995788899847-379998429


No 16 
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00  E-value=2.8e-39  Score=297.22  Aligned_cols=177  Identities=31%  Similarity=0.480  Sum_probs=152.1

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||++  --|||+|+|+++|++|+|+|+| .+++++.+++||+||||||||+|++... ....++. +..++||||||
T Consensus         2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~~-~~~~i~~-~~~~iPILGIC   79 (191)
T PRK06774          2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAGI-SLAVIRH-FADKLPILGVC   79 (191)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHCC-HHHHHHH-HCCCCCEEEEH
T ss_conf             999969997699999999877995999869988999998539996999999989679073-0689997-44699788616


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCE------EEEECCCCCEEEEHHHCCCCCEEEEEECCCC---EEEEE
Q ss_conf             00588787528544667767521011234778970------9996145761570343699828999988998---08726
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT------VEIVSMNHGFAIDASSLPAGLEETHISLFDS---SNCGF  355 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~k------v~iTsqNHg~~v~~~slp~~~~v~~~~~nD~---tiegi  355 (396)
                      ||||+||.++||++.+++.++||.+.++.+..++.      -+...+.|++.|+.+++|++|++++++.+|+   .|||+
T Consensus        80 lG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~g~~~~~~v~~~Hs~~v~~~~lp~~~~v~a~s~~~~~~~~i~ai  159 (191)
T PRK06774         80 LGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLVIATDSLPGCFELTAWTERGGEMDEIMGI  159 (191)
T ss_pred             HHHHHHHHHCCCEEEECCCCEECEEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCCCEEEEEEECCCCCCCEEEEE
T ss_conf             87999865609849289974757036899899876068999868850465078834489987999997999998868888


Q ss_pred             EECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             86799778983487887767001689999999
Q gi|254780420|r  356 RLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       356 ~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      +|+++|+|||||||||...++ +..+|++|++
T Consensus       160 ~~~~~~i~GVQFHPEs~~T~~-G~~il~NFl~  190 (191)
T PRK06774        160 RHRTLPLEGVQFHPESILSEQ-GHQLLDNFLK  190 (191)
T ss_pred             EECCCCEEEEEECCCCCCCCC-HHHHHHHHHC
T ss_conf             838999899876898899958-8899999844


No 17 
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00  E-value=5.8e-39  Score=294.98  Aligned_cols=177  Identities=27%  Similarity=0.498  Sum_probs=149.0

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||++  --+||+|+|+++|++++|+|++ .+++++.+++||||+||||||+|.+... ....+ +.+..++||||||
T Consensus         2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~-~~~~~-~~~~~~iPILGIC   79 (192)
T PRK08857          2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGI-SLQAI-EHFAGKLPILGVC   79 (192)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHH-HHHCCCCCEEEEC
T ss_conf             999979997799999999877992899969989999998429795999899999678286-14669-9735799989987


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEE------EEECCCCCEEEEHHHCCCCCEEEEEECC-CC---EEEE
Q ss_conf             005887875285446677675210112347789709------9961457615703436998289999889-98---0872
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV------EIVSMNHGFAIDASSLPAGLEETHISLF-DS---SNCG  354 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv------~iTsqNHg~~v~~~slp~~~~v~~~~~n-D~---tieg  354 (396)
                      ||||+||.++||++.|++.++||.++++.+..++-.      ....++|++.|+.+++|+++++++...+ |+   .|||
T Consensus        80 lG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~lp~~~~v~a~t~~~~~~~~~i~a  159 (192)
T PRK08857         80 LGHQAIAQVFGGDVVRARQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMG  159 (192)
T ss_pred             HHHHHHHHHHCCEEEECCCCEEEEEEEEEECCCEEEECCCCCEEEEECCCEEEECCCCCCCEEEEEEEECCCCCCCCEEE
T ss_conf             99999999839829988843251157999899304736998879896255278957489982999997268899770538


Q ss_pred             EEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             686799778983487887767001689999999
Q gi|254780420|r  355 FRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       355 i~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      ++|+++|+||||||||+.-- .++..++++|+.
T Consensus       160 ~~h~~~~i~GVQFHPEs~~T-~~G~~il~NFl~  191 (192)
T PRK08857        160 FQHKTLPIEAVQFHPESIKT-EQGHQLLANFLA  191 (192)
T ss_pred             EEECCCCEEEEEECCCCCCC-CCHHHHHHHHHC
T ss_conf             88389998999877977998-474899999726


No 18 
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase.  These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00  E-value=5.5e-39  Score=295.12  Aligned_cols=175  Identities=29%  Similarity=0.522  Sum_probs=146.6

Q ss_pred             EEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9999679--6410232222202454133046-574464413578899858888841011211012221025786347861
Q gi|254780420|r  208 VVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       208 IvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |++||||  -.+||+|+|+++|++++|+|++ .+.+++..++|||||||||||+|+.... ... +.+.++.++||||||
T Consensus         1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~-~~~-~~~~l~~~iPiLGIC   78 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGI-SLE-IIRALAGKVPILGVC   78 (184)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHH-HHHHHHCCCCEEEEC
T ss_conf             899937981799999999867995999989999999997329799999999989256146-099-999984699899980


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEE------EEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             005887875285446677675210112347789709------99614576157034369982899998899808726867
Q gi|254780420|r  285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV------EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       285 lGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv------~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ||||+|+.++||+++|++.++||.++++....++..      .-..+.|+|.++..++|..+.+++. .+|++||+++|+
T Consensus        79 ~G~Qll~~~~Gg~v~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~v~~~Hs~~~~~~~~~~~~~~~a~-~~~~~i~ai~~~  157 (184)
T cd01743          79 LGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKGLPQPFTVGRYHSLVVDPDPLPDLLEVTAS-TEDGVIMALRHR  157 (184)
T ss_pred             HHHHHHHHHCCCEEEECCCCEECEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCCCCEEEEE-CCCCCEEEEEEC
T ss_conf             9999999983984874575140545899977976364278888898861468981357875079998-899849999989


Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9977898348788776700168999999
Q gi|254780420|r  359 DQPVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       359 ~~~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                      ++|+||||||||+..++ ++..++++|+
T Consensus       158 ~~~i~GvQFHPEs~~t~-~G~~il~nFl  184 (184)
T cd01743         158 DLPIYGVQFHPESILTE-YGLRLLENFL  184 (184)
T ss_pred             CCCEEEEEECCCCCCCC-CHHHHHHHHC
T ss_conf             99989998368768982-7389998439


No 19 
>PRK13566 anthranilate synthase; Provisional
Probab=100.00  E-value=9.2e-37  Score=279.49  Aligned_cols=190  Identities=24%  Similarity=0.353  Sum_probs=159.2

Q ss_pred             CCCCCCEEEEEECC--CCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             77777149999679--6410232222202454133046574464413578899858888841011211012221025786
Q gi|254780420|r  201 SSDAKYHVVCIDYG--IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGM  278 (396)
Q Consensus       201 ~~~~~~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~i  278 (396)
                      ....+.||++||-=  --+|+.++|++.|++|+|++++.+.+.+...+||+|+||||||.|++...  ...+.+.+..++
T Consensus       519 ~~~~g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d~~~~~l~~~~pD~vvlSPGPG~P~d~g~--~~~i~~~~~~~i  596 (724)
T PRK13566        519 AVGSGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYPVAEEILDRVNPDLVVLSPGPGRPEDFDC--KATIDAALARNL  596 (724)
T ss_pred             CCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCHHCCC--HHHHHHHHHCCC
T ss_conf             678775799984653279999999998198799981898767776318898998799979000558--599999985799


Q ss_pred             CEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEE------EE-CCCCCEEEEHHHCCCCCEEEEEECCCCE
Q ss_conf             3478610058878752854466776752101123477897099------96-1457615703436998289999889980
Q gi|254780420|r  279 PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IV-SMNHGFAIDASSLPAGLEETHISLFDSS  351 (396)
Q Consensus       279 PilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~------iT-sqNHg~~v~~~slp~~~~v~~~~~nD~t  351 (396)
                      ||||+|||||.|+.||||++..++..-||--.+|++...+-++      +| .--|+..++++++|.+|+||+++ .||.
T Consensus       597 PilGVCLGhQaI~eafGg~l~~~~~p~HGK~S~I~~~~~~~~F~glp~~f~v~RYHSL~v~~~~lP~~L~VTA~t-edGv  675 (724)
T PRK13566        597 PIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGLVFSGLPNEFTVGRYHSLFADPERLPDELLVTAET-EDGV  675 (724)
T ss_pred             CEEEECCCHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEC-CCCE
T ss_conf             879977127699897493885458578898135798489741078999607884137986267799833899985-8982


Q ss_pred             EEEEEECCCCEEEECCCCCC--CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             87268679977898348788--7767001689999999999735
Q gi|254780420|r  352 NCGFRLIDQPVFSVQYHPES--SPGPQDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       352 iegi~~~~~~~~~vQfHPEa--~PGP~D~~~~F~~F~~~i~~~k  393 (396)
                      |||++|+.+|++||||||||  +-|..-+.-+..+++.+..++.
T Consensus       676 iMai~H~~lpi~gVQFHPESIlT~~g~~G~~ii~N~~~~~~~~~  719 (724)
T PRK13566        676 IMAIEHKTLPVAAVQFHPESIMTLGGEVGLRIIENVVRLLARKA  719 (724)
T ss_pred             EEEEEECCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             89885178761256107678622887443999999999986654


No 20 
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739   The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , .  ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=100.00  E-value=2.7e-37  Score=283.19  Aligned_cols=177  Identities=27%  Similarity=0.477  Sum_probs=144.1

Q ss_pred             EEEEECCCCCH--HHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             99996796410--2322222024541330465744644135788998588888410112110122210257863478610
Q gi|254780420|r  208 VVCIDYGIRSN--LLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       208 IvvIDfGiK~n--Ilr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      |+|||||-.||  |-|+|+++|+..+++||++++++|.+.+|.|||||+||.  ...+..+.+...++++.++|||||||
T Consensus         1 ILvlDFGsQY~hLIaRRlRE~gVysE~~p~t~~~eeI~~~~P~GiILSGGP~--sv~~~n~~~~~~~if~LgVPvLGICY   78 (195)
T TIGR00888         1 ILVLDFGSQYNHLIARRLRELGVYSEIVPNTTPLEEIKEKNPKGIILSGGPA--SVYAENAPEADEKIFELGVPVLGICY   78 (195)
T ss_pred             CEEEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHCCCCEEEEECCCC--CCCCCCCHHHHHHHHHCCCCEEEEEH
T ss_conf             9788337651000112201014135784077877998612986799727887--64678850224888627996887624


Q ss_pred             HHHHHHHHCCCCCCCCC---CC------------CCCCCCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCC
Q ss_conf             05887875285446677---67------------5210112347789709996145761570343699828999988998
Q gi|254780420|r  286 GHQLLGLALGAQTVKMY---QG------------HHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDS  350 (396)
Q Consensus       286 GhQ~l~~a~G~~~~kl~---~G------------hrG~N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~  350 (396)
                      |||+||.+|||++.+-.   ||            ++|.+.-..--..-+||++   |+..|.+  ||++|++.+.+.|.-
T Consensus        79 G~Ql~A~~lGG~V~~~~~~EYG~a~l~i~~~~~LF~glp~~LTA~P~~~VWMS---H~D~V~~--lP~gF~vlA~s~~hc  153 (195)
T TIGR00888        79 GMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFEGLPKALTAKPESTVWMS---HGDKVKE--LPEGFKVLATSDNHC  153 (195)
T ss_pred             HHHHHHHHHCCEEEECCCCCCCEEEEEEECCCHHHHCCCHHHCCCCCCCCCCC---CCCEEEE--CCCCCEEEEECCCCC
T ss_conf             57899998298776568887313899984288123078035346888871123---4624200--869976887528988


Q ss_pred             EEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             087268679977898348788776700168999999999973
Q gi|254780420|r  351 SNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKR  392 (396)
Q Consensus       351 tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~  392 (396)
                      =+|+|+|.++|+||||||||-.= ...+..|++||+..+++.
T Consensus       154 P~aAm~~~~K~~YGVQFHPEV~H-t~~G~~~L~NF~~~~C~~  194 (195)
T TIGR00888       154 PVAAMEHEDKPIYGVQFHPEVTH-TEYGKELLKNFVKDVCGC  194 (195)
T ss_pred             CCCEEECCCCCEEEEEECCCEEE-CHHHHHHHHHHHHHHCCC
T ss_conf             10000048996666651783121-534578999888763158


No 21 
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00  E-value=2.9e-36  Score=275.93  Aligned_cols=180  Identities=27%  Similarity=0.456  Sum_probs=146.8

Q ss_pred             CEEEEEECC--CCCHHHHHHHHHCCCCEEEECCC-CH--HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCE
Q ss_conf             149999679--64102322222024541330465-74--46441357889985888884101121101222102578634
Q gi|254780420|r  206 YHVVCIDYG--IRSNLLRVLSSLGCRITIVGAET-SY--KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPM  280 (396)
Q Consensus       206 ~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~-~~--~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPi  280 (396)
                      .||++||++  --|||+|+|++.|++++|++++. ..  .+.+..+||||+||||||+|+.... ..++++.+...++||
T Consensus         1 MrILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~~~~~dgIILSpGPg~P~~~~~-~~~~i~~~~~~~iPI   79 (221)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAVAAGFDGVLLSPGPGTPERAGA-SIDMVRACAAAGTPL   79 (221)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHHCCCCCE
T ss_conf             9799993889339999999987799189998998998899876348998999699998011672-488998753259988


Q ss_pred             EEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCE------EEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEE
Q ss_conf             786100588787528544667767521011234778970------99961457615703436998289999889980872
Q gi|254780420|r  281 FGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT------VEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCG  354 (396)
Q Consensus       281 lGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~k------v~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tieg  354 (396)
                      ||||||||+|+.++||++.+++...||.-..+....++-      -+...+.|+..|+++++|++|++++.+. |+.||+
T Consensus        80 LGIClG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~gl~~~~~~~ryHS~~v~~~~lP~~~~v~A~s~-~~~ima  158 (221)
T PRK07765         80 LGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTNVGVLQGLPDPFTATRYHSLTILPETLPAELEVTARTD-SGVIMA  158 (221)
T ss_pred             EEEEHHHHHHHHHHCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEECC-CCCEEE
T ss_conf             9870999999998397898889553656879998998761589997478874218997615899628999849-986865


Q ss_pred             EEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             6867997789834878877670016899999999
Q gi|254780420|r  355 FRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       355 i~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      ++|+++|+|||||||||.-- ..+..|+.+|++.
T Consensus       159 ~~h~~~~i~GVQFHPEs~~T-~~G~~ll~NFl~i  191 (221)
T PRK07765        159 VRHRELPIHGVQFHPESILT-EGGHRMLANWLTY  191 (221)
T ss_pred             EEECCCCEEEEEECCCCCCC-CCHHHHHHHHHHH
T ss_conf             87078978999978853578-1669999999998


No 22 
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=100.00  E-value=3.1e-36  Score=275.78  Aligned_cols=177  Identities=22%  Similarity=0.395  Sum_probs=145.6

Q ss_pred             CEEEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             149999679--6410232222202454133046-5744644135788998588888410112110122210257863478
Q gi|254780420|r  206 YHVVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       206 ~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      .||++||+|  --+||.|+|+++|++++|++++ .+.+++.  ++|||+||+|||+|..... ...+++++ ..++||||
T Consensus         3 ~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~~--~~~~IIlSpGPg~p~~~~~-~~~~i~~~-~~~~PILG   78 (191)
T PRK06895          3 TNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQ-LFAMLERY-YQQKSILG   78 (191)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH--CCCEEEEECCCCCCCCCCH-HHHHHHHH-CCCCCEEE
T ss_conf             86999969884899999999877996999847848998985--5896999089998010522-49999986-06898789


Q ss_pred             EECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEE-------EEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEE
Q ss_conf             61005887875285446677675210112347789709-------99614576157034369982899998899808726
Q gi|254780420|r  283 ICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV-------EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGF  355 (396)
Q Consensus       283 IClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv-------~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi  355 (396)
                      ||||||+||.++||++.+++...||...++.....+.+       +-..+.|+++|++.++|.+|++++++ +|+.+||+
T Consensus        79 IClG~Q~i~~~~Gg~v~~~~~~~hG~~~~i~~~~~~~lf~g~~~~~~v~~yHs~~v~~~~lp~~~~v~a~~-~~~~i~a~  157 (191)
T PRK06895         79 VCLGHQTLCEFFGGTLYNLENVRHGQQRTLKVRSNSPLFDGLPEEFNIGLYHSWAVSQENFPTPLEITAVC-DEEVVMAF  157 (191)
T ss_pred             ECHHHHHHHHHHCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEC-CCCEEEEE
T ss_conf             82999999998295799688745522789999189834658999748766677787605789746999975-99809988


Q ss_pred             EECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             867997789834878877670016899999999
Q gi|254780420|r  356 RLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       356 ~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      +|+++|+||||||||+.- ..++..++++|+++
T Consensus       158 ~h~~~~i~GvQFHPEs~~-T~~G~~il~NFl~i  189 (191)
T PRK06895        158 QHKHLPIYGVQFHPESYI-SEFGEQILRNWLAI  189 (191)
T ss_pred             EECCCCEEEEEECCCCCC-CCCHHHHHHHHHCC
T ss_conf             848998999982884688-87859999998656


No 23 
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00  E-value=3.2e-35  Score=268.65  Aligned_cols=179  Identities=29%  Similarity=0.509  Sum_probs=146.5

Q ss_pred             CEEEEEECC--CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             149999679--6410232222202454133046-5744644135788998588888410112110122210257863478
Q gi|254780420|r  206 YHVVCIDYG--IRSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       206 ~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      .+|++||-=  --||++++|.+.|++|+|+.++ .+.+++.+++||+|+||||||.|++... ..++++++ .+++||||
T Consensus         2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~-~~~~i~~~-~~~~PiLG   79 (191)
T COG0512           2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRF-AGRIPILG   79 (191)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCH-HHHHHHHH-CCCCCEEE
T ss_conf             56999977442499999999973993499988965877886049998998489979377361-89999986-08998899


Q ss_pred             EECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEE-------EECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEE
Q ss_conf             610058878752854466776752101123477897099-------9614576157034369982899998899808726
Q gi|254780420|r  283 ICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE-------IVSMNHGFAIDASSLPAGLEETHISLFDSSNCGF  355 (396)
Q Consensus       283 IClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~-------iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi  355 (396)
                      ||||||.|+.||||++.+++..-||-..++.+-..+ ++       -..-=|+..|+++++|.+|++|+++..|+.|||+
T Consensus        80 VCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~-iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai  158 (191)
T COG0512          80 VCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSG-LFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAV  158 (191)
T ss_pred             ECCCHHHHHHHHCCEEEECCCCCCCEEEEEECCCCC-CCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEE
T ss_conf             874378999973978875597767812554029960-0157999888886278984478799833899996899879888


Q ss_pred             EECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             867997789834878877670016899999999
Q gi|254780420|r  356 RLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       356 ~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      +|+++|+|||||||||- ....+..+..+|+++
T Consensus       159 ~h~~~pi~gvQFHPESi-lT~~G~~il~Nfl~~  190 (191)
T COG0512         159 RHKKLPIYGVQFHPESI-LTEYGHRILENFLRL  190 (191)
T ss_pred             EECCCCEEEEECCCCCC-CCCCHHHHHHHHHHH
T ss_conf             60899878882087103-662148999999844


No 24 
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=4.1e-34  Score=260.86  Aligned_cols=179  Identities=22%  Similarity=0.329  Sum_probs=140.7

Q ss_pred             CEEEEEEC--CCCCHHHHHHHHHCCCCEEEECCC----CHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             14999967--964102322222024541330465----744644135788998588888410112110122210257863
Q gi|254780420|r  206 YHVVCIDY--GIRSNLLRVLSSLGCRITIVGAET----SYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMP  279 (396)
Q Consensus       206 ~kIvvIDf--GiK~nIlr~L~~~g~~v~Vvp~~~----~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iP  279 (396)
                      .+|++||-  =--|||+++|...|++|+|++++.    ..+++..++||+|+||||||.|++... ..++++. +.+++|
T Consensus         2 ~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~-~~~ii~~-~~~~iP   79 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGC-MPELLTR-LRGKLP   79 (531)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCC-HHHHHHH-HCCCCC
T ss_conf             70999828886288999999866995699969983130199997249596998999989023657-3999998-659999


Q ss_pred             EEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCE------EEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEE
Q ss_conf             4786100588787528544667767521011234778970------9996145761570343699828999988998087
Q gi|254780420|r  280 MFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT------VEIVSMNHGFAIDASSLPAGLEETHISLFDSSNC  353 (396)
Q Consensus       280 ilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~k------v~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tie  353 (396)
                      |||||||||+|+.+||+++.+++..-||.-.++.+-.++-      -+...+.|++.+  +++|.+|+++..+  |++||
T Consensus        80 ILGICLGhQ~ia~~~Gg~v~~a~~~~HGk~s~i~~~~~~lF~glp~~~~v~rYHSl~~--~~lP~~l~v~A~~--~g~iM  155 (531)
T PRK09522         80 IIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVG--SNIPAGLTINAHF--NGMVM  155 (531)
T ss_pred             EEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECEECC--CCCCCCEEEEEEE--CCEEE
T ss_conf             8998787789999729889677984323365679898520289999977996443304--4799987999716--99999


Q ss_pred             EEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             26867997789834878877670016899999999997
Q gi|254780420|r  354 GFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       354 gi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |++|+++|+|||||||||- ...++..++.+|+.-...
T Consensus       156 ai~h~~~pi~GVQFHPESi-~T~~G~~il~NFLn~~~~  192 (531)
T PRK09522        156 AVRHDADRVCGFQFHPESI-LTTQGARLLEQTLAWAQQ  192 (531)
T ss_pred             EEEECCCCEEEEEECCCCC-CCCCHHHHHHHHHCCCCC
T ss_conf             9998999869982087546-887779999998565434


No 25 
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00  E-value=7.4e-34  Score=259.04  Aligned_cols=180  Identities=27%  Similarity=0.383  Sum_probs=136.7

Q ss_pred             CEEEEEECC--CCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             149999679--641023222220245413304657446441357889985888884101121101222102578634786
Q gi|254780420|r  206 YHVVCIDYG--IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       206 ~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      .||++||..  --|||+++|...|++++|++++.+.+++.+++||+|+||||||.|++... ..++++.+ .+++|||||
T Consensus         2 ~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~~~~~~~~~~~pd~ivlSPGPg~P~d~g~-~~~~~~~~-~~~iPILGI   79 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVETILAANPDLICLSPGPGYPADAGN-MMALIERT-LGQIPLLGI   79 (208)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHH-HCCCCEEEH
T ss_conf             7799994889759999999986799079996999999998519995999999999577757-49999997-356982211


Q ss_pred             ECHHHHHHHHCCCCCCCCCCCC----------CCCCCCCEE-CCC----------CE-EEEECCCCCEEEEHHHCCCCCE
Q ss_conf             1005887875285446677675----------210112347-789----------70-9996145761570343699828
Q gi|254780420|r  284 CLGHQLLGLALGAQTVKMYQGH----------HGVNHPVKN-ISN----------GT-VEIVSMNHGFAIDASSLPAGLE  341 (396)
Q Consensus       284 ClGhQ~l~~a~G~~~~kl~~Gh----------rG~N~Pv~~-~~t----------~k-v~iTsqNHg~~v~~~slp~~~~  341 (396)
                      |||||+||.++||++.+++--|          .|..+|+.. +.+          ++ +. ...-|+.++.  .+|.+++
T Consensus        80 CLGhQ~i~~~~Gg~v~~~~~~HG~~s~i~~~~~g~~~~lf~gl~~~~~~~~~~~~~~~~~-v~rYHSl~~~--~~p~~~~  156 (208)
T PRK05637         80 CLGYQALIEYHGGKVEPCGPVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVP-IGRYHSLGCV--VAPDGIE  156 (208)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEECCCEEE--ECCCCCE
T ss_conf             477899999709788306776550667898788887700068876554455345677535-7710601671--0799974


Q ss_pred             EE--EEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99--998899808726867997789834878877670016899999999997
Q gi|254780420|r  342 ET--HISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       342 v~--~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      ..  ..+..++.+||++|+++|+|||||||||--- .++..|+.+|++.+..
T Consensus       157 ~~~~~~~~~~~viMa~~h~~~p~~GVQFHPESi~T-~~G~~il~nfv~~~~~  207 (208)
T PRK05637        157 SLGTCSSEIGDVIMAARTTDGKAIGLQFHPESVLS-PTGPVILSRCVEQLLA  207 (208)
T ss_pred             EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHC
T ss_conf             88999759999999999789997998669753688-7779999999999961


No 26 
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00  E-value=1.4e-32  Score=250.15  Aligned_cols=179  Identities=23%  Similarity=0.410  Sum_probs=142.8

Q ss_pred             CEEEEEECCCCCH--HHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             1499996796410--23222220245413304657446441357889985888884101121101222102578634786
Q gi|254780420|r  206 YHVVCIDYGIRSN--LLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       206 ~kIvvIDfGiK~n--Ilr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      -+|++||||..|+  |.|+++++|+...++|++++.+++.+.+|.||+||+||....+.  .....-..+++.++|||||
T Consensus         5 ~~IlIlDFGSQytqLIaRRvRElgVysEI~p~~~~~~~i~~~~pkgIILSGGP~SV~~~--~aP~~d~~if~l~IPILGI   82 (513)
T PRK00074          5 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEE--GAPRADPEIFELGVPVLGI   82 (513)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCHHHHHCCCCEEEE
T ss_conf             86999988964999999999823835999669999899850499789988999636899--9988998998269986997


Q ss_pred             ECHHHHHHHHCCCCCCCCC---CCCCCC----CCCCE-ECC-CCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEE
Q ss_conf             1005887875285446677---675210----11234-778-97099961457615703436998289999889980872
Q gi|254780420|r  284 CLGHQLLGLALGAQTVKMY---QGHHGV----NHPVK-NIS-NGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCG  354 (396)
Q Consensus       284 ClGhQ~l~~a~G~~~~kl~---~GhrG~----N~Pv~-~~~-t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tieg  354 (396)
                      |||||+||..+||++.+.+   ||+--.    +.|.. ++. +-.||++   ||..|.  ++|++|++++.+. |..+++
T Consensus        83 CYG~Qlia~~~GG~V~~s~~rEyG~a~l~i~~~s~Lf~gl~~~~~VWMS---HgD~V~--~lP~gF~viA~s~-n~~iAa  156 (513)
T PRK00074         83 CYGMQLMAHQLGGKVERAGKREYGRAELEVDGDSALFKGIPEEQDVWMS---HGDKVT--ELPEGFKVIASTE-NCPIAA  156 (513)
T ss_pred             CHHHHHHHHHHCCEEEECCCCEECCEEEEEECCCCCCCCCCCCCEEEEE---CCCCEE--ECCCCCEEEEECC-CCCEEE
T ss_conf             5889999998599998569601121489991587333689986368875---243014--3799847999549-973678


Q ss_pred             EEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             686799778983487887767001689999999999735
Q gi|254780420|r  355 FRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       355 i~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k  393 (396)
                      ++|+++++||||||||..- ..++..++.+|+--|.+.+
T Consensus       157 i~~~~~~iyGvQFHPEV~H-T~~G~~iL~NFl~~Ic~~~  194 (513)
T PRK00074        157 IANEERKFYGVQFHPEVTH-TEQGKKLLENFVFDICGCK  194 (513)
T ss_pred             EEECCCCEEEEECCCEEEE-CCCCHHHHHHHHHHHHCCC
T ss_conf             9806786788702863453-1775799999999987889


No 27 
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112   This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=99.98  E-value=2.6e-31  Score=241.06  Aligned_cols=257  Identities=21%  Similarity=0.254  Sum_probs=182.9

Q ss_pred             CCCHHHHHHHHHHCCC-----CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf             2576899999985398-----42366327654589789888774158874321011013333211168653445434434
Q gi|254780420|r  125 GIDTRALTVWIRDYGV-----SNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWGEETSFL  199 (396)
Q Consensus       125 GIDTRaLTk~IRe~G~-----~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~  199 (396)
                      +.||=-.-|-||-+-.     .-|.+-++  .+-+.|++...+|+.--.+.-.-++.+-....      .....+-+++.
T Consensus       447 ~mnTGL~LRTIR~~dgiAeVRaGATLLyD--S~P~aEeaEt~lKAaA~~~aIR~ak~a~~a~~------~~~~~~~gkyl  518 (726)
T TIGR01815       447 DMNTGLTLRTIRLKDGIAEVRAGATLLYD--SDPEAEEAETELKAAAAIEAIRDAKAADAAKE------ESAVAKVGKYL  518 (726)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CHHHHHHCCCC
T ss_conf             87521254443242380167604033268--88514467889999999998752202574345------01265520247


Q ss_pred             CCCCCCCEEEEEECC--CCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             677777149999679--641023222220245413304657446441357889985888884101121101222102578
Q gi|254780420|r  200 KSSDAKYHVVCIDYG--IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSG  277 (396)
Q Consensus       200 ~~~~~~~kIvvIDfG--iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~  277 (396)
                      +.+..+.+|.+||=-  ==|.+.++|++-|+.||-++...+-+-+...+||-|+||||||.|++.+  +..++++.+...
T Consensus       519 PdGq~G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~ae~~fd~~rPDLVVLSPGPGrP~dFd--v~~Ti~aa~ar~  596 (726)
T TIGR01815       519 PDGQEGKRILLVDHEDSFVHTLANYLRQTGASVTTLRHSFAEELFDEERPDLVVLSPGPGRPKDFD--VKETIKAALARD  596 (726)
T ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCEEEECCCCCCCCCCC--HHHHHHHHHHCC
T ss_conf             886258779998547543777788876348755304304789997327998898687312387544--788999999728


Q ss_pred             CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEEC--------CCCCEEEEHHHCCCCCEEEEEECCC
Q ss_conf             63478610058878752854466776752101123477897099961--------4576157034369982899998899
Q gi|254780420|r  278 MPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVS--------MNHGFAIDASSLPAGLEETHISLFD  349 (396)
Q Consensus       278 iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTs--------qNHg~~v~~~slp~~~~v~~~~~nD  349 (396)
                      +||||+|||.|-|+-||||+...|.+.-||-.--|+-+.-+.|.+..        -=|+..-+++.||.+|.||+++. |
T Consensus       597 lP~FGVCLGLQg~vEafGG~L~vL~~P~HGK~srirVl~p~s~~F~gLpe~~TVGRYHSlfA~~~rLP~el~vTA~s~-D  675 (726)
T TIGR01815       597 LPVFGVCLGLQGLVEAFGGELDVLAIPVHGKASRIRVLEPDSVLFAGLPEELTVGRYHSLFARSDRLPKELKVTAESE-D  675 (726)
T ss_pred             CCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEC-C
T ss_conf             985774134689998746721357888788633688836875787278970343003767556456874237878506-8


Q ss_pred             CEEEEEEECCCCEEEECCCCCC--CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             8087268679977898348788--776700168999999999973
Q gi|254780420|r  350 SSNCGFRLIDQPVFSVQYHPES--SPGPQDSYYLFSTFIDFMHKR  392 (396)
Q Consensus       350 ~tiegi~~~~~~~~~vQfHPEa--~PGP~D~~~~F~~F~~~i~~~  392 (396)
                      ++||||+|+.+|+-+|||||||  +=+-.=+-.|.+|.++-.-++
T Consensus       676 g~iMaiEH~~lP~AAVQFHPESImtL~G~aGl~mi~NVv~~la~~  720 (726)
T TIGR01815       676 GVIMAIEHRKLPVAAVQFHPESIMTLDGDAGLAMIENVVDKLAKS  720 (726)
T ss_pred             CEEEEEECCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             717320247687112511761100056046899999999997331


No 28 
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221   This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=99.97  E-value=1.1e-31  Score=243.84  Aligned_cols=170  Identities=28%  Similarity=0.536  Sum_probs=133.3

Q ss_pred             EEEEE----CCCCCHHHHHHHHHC------CCCEEEECC-CCHHHHHHCCC-----CEEEECCCCCCCCCCCCC---CHH
Q ss_conf             99996----796410232222202------454133046-57446441357-----889985888884101121---101
Q gi|254780420|r  208 VVCID----YGIRSNLLRVLSSLG------CRITIVGAE-TSYKDIMSLQP-----DGVLLSNGPGDPAVTSVY---SSP  268 (396)
Q Consensus       208 IvvID----fGiK~nIlr~L~~~g------~~v~Vvp~~-~~~~~i~~~~p-----dgi~lSnGPGdP~~~~~~---~~~  268 (396)
                      |.+||    |  -||+++++.+.|      .+|.|-+++ ..+++|.++.|     |+|++||||+.|+.....   +.+
T Consensus         2 vL~IDnYDSF--TYNlv~~~~~~gdisPGv~~V~Vkrnd~~~~~~ie~L~P~~~lfdaivisPGPC~P~eAa~~~Gii~~   79 (212)
T TIGR00566         2 VLLIDNYDSF--TYNLVQYFEELGDISPGVAEVVVKRNDSLTLQEIEALLPLLPLFDAIVISPGPCTPNEAAISMGIILE   79 (212)
T ss_pred             EEEEECCCHH--HHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCHHHHHH
T ss_conf             2456567423--78999986421776736105777206731034587631135633456765865683212204117999


Q ss_pred             HHHHHCCCCC---CEEEEECHHHHHHHHCCCCCCCC---CCC------CC------CC-C-CCCEECCCCEEEEECCCCC
Q ss_conf             2221025786---34786100588787528544667---767------52------10-1-1234778970999614576
Q gi|254780420|r  269 IICKLVDSGM---PMFGICLGHQLLGLALGAQTVKM---YQG------HH------GV-N-HPVKNISNGTVEIVSMNHG  328 (396)
Q Consensus       269 ~~~~~~~~~i---PilGIClGhQ~l~~a~G~~~~kl---~~G------hr------G~-N-~Pv~~~~t~kv~iTsqNHg  328 (396)
                      +++. +++|+   ||||||||||.||+|+||++.++   ++|      |.      |. | .|-+-+...| |     |+
T Consensus        80 ~i~h-~aGkldevPILGvCLG~QA~~qA~Gg~V~~a~~~~HGk~s~i~hng~~~f~GL~~GyPP~~L~~TR-Y-----HS  152 (212)
T TIGR00566        80 AIRH-FAGKLDEVPILGVCLGHQALAQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNGYPPDTLTATR-Y-----HS  152 (212)
T ss_pred             HHHH-HCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCC-E-----EE
T ss_conf             9874-237622676020105568788742872254211368730012477710124655776866443575-0-----55


Q ss_pred             EEEEHHHCCCCCEEEEEECCC-CEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             157034369982899998899-80872686799778983487887767001689999999
Q gi|254780420|r  329 FAIDASSLPAGLEETHISLFD-SSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       329 ~~v~~~slp~~~~v~~~~~nD-~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      ..|.+++||..+.+|.++..+ ..|||+|||++|++||||||||.=- .-+..|.++|++
T Consensus       153 L~V~p~~l~~~~~~~~~~~~~G~eiM~irh~~~p~eGVQFHPESilS-e~G~~ll~Nfl~  211 (212)
T TIGR00566       153 LVVEPETLPTCFQVTALEEENGIEIMAIRHRDLPLEGVQFHPESILS-ELGHQLLANFLH  211 (212)
T ss_pred             EEECCCCCCCCCCEEEEECCCCCEEEHHHHCCCCCCCEEECCHHHHH-HHHHHHHHHHHC
T ss_conf             66744577622010100016870131013347850220107135534-227899998723


No 29 
>KOG0026 consensus
Probab=99.94  E-value=7.3e-27  Score=209.82  Aligned_cols=183  Identities=28%  Similarity=0.480  Sum_probs=144.5

Q ss_pred             CCEEEEEEC--CCCCHHHHHH-HHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCE
Q ss_conf             714999967--9641023222-2202454133046-57446441357889985888884101121101222102578634
Q gi|254780420|r  205 KYHVVCIDY--GIRSNLLRVL-SSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPM  280 (396)
Q Consensus       205 ~~kIvvIDf--GiK~nIlr~L-~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPi  280 (396)
                      ...|++||=  --.||...+| .+.||.+.|+++| .+.+|+.+++|++++||+|||.|++.. ...+.+.+ +.+++|+
T Consensus        18 n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsG-Is~~~i~~-f~~~iP~   95 (223)
T KOG0026          18 NGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSG-ISLQTVLE-LGPLVPL   95 (223)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEECCCCCCCCCCC-CHHHHHHH-HCCCCCE
T ss_conf             687899845551348999986312587179984673117888625988078569998976454-24899998-5787855


Q ss_pred             EEEECHHHHHHHHCCCCCCCCCCCC-CCCCCCCEECCCCEEE---------EECCCCCEEEEHHHCC-CCCEEEEEECCC
Q ss_conf             7861005887875285446677675-2101123477897099---------9614576157034369-982899998899
Q gi|254780420|r  281 FGICLGHQLLGLALGAQTVKMYQGH-HGVNHPVKNISNGTVE---------IVSMNHGFAIDASSLP-AGLEETHISLFD  349 (396)
Q Consensus       281 lGIClGhQ~l~~a~G~~~~kl~~Gh-rG~N~Pv~~~~t~kv~---------iTsqNHg~~v~~~slp-~~~~v~~~~~nD  349 (396)
                      ||||+|.|+|..+||+++....|+- ||-..||.+-..|.+-         +...-|+.+...+||| ..|+||++.. |
T Consensus        96 fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTE-n  174 (223)
T KOG0026          96 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTE-D  174 (223)
T ss_pred             EEEEECHHHHHHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHEEEEEECC-C
T ss_conf             656400344456528576305752462453332237754332102799872777654400013568710304566413-8


Q ss_pred             CEEEEEEECCCC-EEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             808726867997-789834878877670016899999999997
Q gi|254780420|r  350 SSNCGFRLIDQP-VFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       350 ~tiegi~~~~~~-~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |.|||.||+++. +-||||||||-= ..++.-+..+|+.+..+
T Consensus       175 G~iMgaRHkKY~~ieGVQfHPESIl-teeGk~~irNflni~~~  216 (223)
T KOG0026         175 GLVMAARHRKYKHIQGVQFHPESII-TTEGKTIVRNFIKIVEK  216 (223)
T ss_pred             CEEEEEECCCCEECCCEEECCHHHH-HHHHHHHHHHHHHHCCC
T ss_conf             5788741233100232232607764-46658999999875336


No 30 
>TIGR01823 PabB-fungal para-aminobenzoate synthase; InterPro: IPR010117   This entry represents the fungal clade of para-aminobenzoate synthase, which acts on chorismate to form para-aminobenzoic acid (PABA), a precursor of folate..
Probab=99.93  E-value=1.7e-25  Score=200.13  Aligned_cols=187  Identities=27%  Similarity=0.392  Sum_probs=131.7

Q ss_pred             CCCEEEEEECC--CCCHHHHHHHHH--------CCCCEEEECCCCH--HHHHHC--CCCEEEECCCCCCCCC--CCCCCH
Q ss_conf             77149999679--641023222220--------2454133046574--464413--5788998588888410--112110
Q gi|254780420|r  204 AKYHVVCIDYG--IRSNLLRVLSSL--------GCRITIVGAETSY--KDIMSL--QPDGVLLSNGPGDPAV--TSVYSS  267 (396)
Q Consensus       204 ~~~kIvvIDfG--iK~nIlr~L~~~--------g~~v~Vvp~~~~~--~~i~~~--~pdgi~lSnGPGdP~~--~~~~~~  267 (396)
                      .+.+|..|||=  --||+++.|.+.        .+.|++|-+|+.-  ++++.+  .+|+||+.||||||..  .+..+.
T Consensus         4 ~rl~vL~ID~YDSftyNvv~lle~~~d~~PGvnav~V~tvhsD~~~sm~~l~e~l~~FdAiVvGPGPG~PN~GA~d~gI~   83 (851)
T TIGR01823         4 ARLQVLFIDAYDSFTYNVVALLEKALDVRPGVNAVSVITVHSDKFDSMDDLLELLLLFDAIVVGPGPGDPNVGAKDVGIL   83 (851)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHH
T ss_conf             31441578701101689999999874158774468999970687235346888874178589888776776511444688


Q ss_pred             HHHHHHCCC---CCCEEEEECHHHHHHHHCCCCCCCCC-CCCCCCCCCCEECCCCEEEE----EC---------CCCCEE
Q ss_conf             122210257---86347861005887875285446677-67521011234778970999----61---------457615
Q gi|254780420|r  268 PIICKLVDS---GMPMFGICLGHQLLGLALGAQTVKMY-QGHHGVNHPVKNISNGTVEI----VS---------MNHGFA  330 (396)
Q Consensus       268 ~~~~~~~~~---~iPilGIClGhQ~l~~a~G~~~~kl~-~GhrG~N~Pv~~~~t~kv~i----Ts---------qNHg~~  330 (396)
                      ..+..+-.+   .+||||||||+|.|||+.|+.+.+|+ +..||.=|-|   .+.+..|    .+         .=|+.=
T Consensus        84 ~~~w~l~~Gk~D~~Pv~GICLGFQslcL~qGa~i~rlpn~p~HGqV~~~---~t~~~~if~g~~~GyPdtvk~trYHSLy  160 (851)
T TIGR01823        84 REVWELANGKLDEVPVLGICLGFQSLCLYQGADIERLPNLPLHGQVYEV---KTSDAAIFEGVSSGYPDTVKSTRYHSLY  160 (851)
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEE---EECCHHHHCCCCCCCCCCEEEEEEEEEE
T ss_conf             9999732895313551100156899998558823561788657437888---7401155524114788632244557887


Q ss_pred             EEHHHCC------------------CCC----EEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCC-HHHHHHHHHH
Q ss_conf             7034369------------------982----8999988998087268679977898348788776700-1689999999
Q gi|254780420|r  331 IDASSLP------------------AGL----EETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQD-SYYLFSTFID  387 (396)
Q Consensus       331 v~~~slp------------------~~~----~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D-~~~~F~~F~~  387 (396)
                      +..+++.                  +++    ..+..+-+|..+|.++|+++|+|||||||||+---.+ +..||.+|++
T Consensus       161 an~~~id~strGvdsGnPqadrfaskdldLL~~~l~ed~e~~i~Ms~~~~k~P~fGv~yHPESc~S~~~a~~kl~~nfl~  240 (851)
T TIGR01823       161 ANKESIDSSTRGVDSGNPQADRFASKDLDLLALILLEDEEDQILMSVKAKKKPIFGVQYHPESCKSEKEASVKLLKNFLK  240 (851)
T ss_pred             ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             31788653325556788501233432367899886226888122003105887745650564334554578999999998


Q ss_pred             HHHHHC
Q ss_conf             999735
Q gi|254780420|r  388 FMHKRK  393 (396)
Q Consensus       388 ~i~~~k  393 (396)
                      |-..+-
T Consensus       241 la~~~N  246 (851)
T TIGR01823       241 LALINN  246 (851)
T ss_pred             HHHCCC
T ss_conf             740167


No 31 
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.91  E-value=3.7e-24  Score=190.78  Aligned_cols=175  Identities=29%  Similarity=0.406  Sum_probs=131.2

Q ss_pred             CEEEEEECCCCCH--HHHHHHHHC-CCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCC---CCCHHHHHHHCCCCCC
Q ss_conf             1499996796410--232222202-454133046574464413578899858888841011---2110122210257863
Q gi|254780420|r  206 YHVVCIDYGIRSN--LLRVLSSLG-CRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTS---VYSSPIICKLVDSGMP  279 (396)
Q Consensus       206 ~kIvvIDfGiK~n--Ilr~L~~~g-~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~---~~~~~~~~~~~~~~iP  279 (396)
                      .+|+++|||..++  |-|.++++| ...+++|++.+.+++...+||||+||.||-......   ......+..+....+|
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p   81 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP   81 (198)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             57999957970767999999873982699985788801156668888998589887764433305578999971888887


Q ss_pred             EEEEECHHHHHHHHCCCCCCCCC---CCCCCCCCCCEEC------CCC--EEE-EECCCCCEEEEHHHCCCCCEEEEEEC
Q ss_conf             47861005887875285446677---6752101123477------897--099-96145761570343699828999988
Q gi|254780420|r  280 MFGICLGHQLLGLALGAQTVKMY---QGHHGVNHPVKNI------SNG--TVE-IVSMNHGFAIDASSLPAGLEETHISL  347 (396)
Q Consensus       280 ilGIClGhQ~l~~a~G~~~~kl~---~GhrG~N~Pv~~~------~t~--kv~-iTsqNHg~~v~~~slp~~~~v~~~~~  347 (396)
                      |||||||||+||.++|+++.+.+   ||.    .||.-.      ..+  ... ...|.|+..|++  ||.++++++.+.
T Consensus        82 vLGIC~G~Ql~A~~lGg~V~~~~~~E~G~----~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~v~~--lP~g~~vlA~s~  155 (198)
T COG0518          82 VLGICLGHQLLAKALGGKVERGPKREIGW----TPVELTEGDDPLFAGLPDLFTTVFMSHGDTVVE--LPEGAVVLASSE  155 (198)
T ss_pred             EEEECHHHHHHHHHHCCEEECCCCCCCCE----EEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCC--CCCCCEEEECCC
T ss_conf             89987618999998498896468876515----999972586500048854337106613074434--899989986589


Q ss_pred             CCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9980872686799778983487887767001689999999999
Q gi|254780420|r  348 FDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       348 nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      + --++++++. +++||||||||.+.  ....-++++|..-+.
T Consensus       156 ~-cp~qa~~~~-~~~~gvQFHpEv~~--~~~~~~l~nf~~~i~  194 (198)
T COG0518         156 T-CPNQAFRYG-KRAYGVQFHPEVTH--EYGEALLENFAHEIC  194 (198)
T ss_pred             C-CHHHHEECC-CCEEEEEEEEEEEH--HHHHHHHHHHHHHHC
T ss_conf             9-804205667-85799942018738--999999998656640


No 32 
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.90  E-value=6.6e-23  Score=181.96  Aligned_cols=170  Identities=26%  Similarity=0.471  Sum_probs=112.5

Q ss_pred             CEEEEEECCCCC--HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC---CHHHHHHHCCCCCCE
Q ss_conf             149999679641--023222220245413304657446441357889985888884101121---101222102578634
Q gi|254780420|r  206 YHVVCIDYGIRS--NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY---SSPIICKLVDSGMPM  280 (396)
Q Consensus       206 ~kIvvIDfGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~---~~~~~~~~~~~~iPi  280 (396)
                      .+|++||||.-+  +|.|.|+++|+++.++   .+.+++.  ++|+|+|+ |.|.+......   ..+.+.+.+..++||
T Consensus         2 k~I~Iid~G~~n~~si~~~l~~lg~~~~i~---~~~~~l~--~~d~iILP-GvG~~~~~~~~l~~~~~~i~~~~~~~~Pi   75 (201)
T PRK13143          2 KMIVIIDYGLGNLRSVSKGLERAGADVEIT---SDPEEIL--SADGIVLP-GVGAFGDVMENLGPLKETINEAVDDGKPF   75 (201)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEC---CCHHHHH--HCCEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             889999889719999999999869859992---8999984--37967973-88818899987651579999999869987


Q ss_pred             EEEECHHHHHHHH------------CCCCCCCCC----CCCCCCC-------CCC-EECCCC-EEEEECCCCCEEEEHHH
Q ss_conf             7861005887875------------285446677----6752101-------123-477897-09996145761570343
Q gi|254780420|r  281 FGICLGHQLLGLA------------LGAQTVKMY----QGHHGVN-------HPV-KNISNG-TVEIVSMNHGFAIDASS  335 (396)
Q Consensus       281 lGIClGhQ~l~~a------------~G~~~~kl~----~GhrG~N-------~Pv-~~~~t~-kv~iTsqNHg~~v~~~s  335 (396)
                      ||||||||+|+..            +++++.|++    ..|-|.|       +|. .++.++ .+|+.   |+|.+++  
T Consensus        76 LGIClGmQll~~~s~E~~~~~GLg~~~g~v~~~~~~~~ip~~G~~~i~~~~~~~l~~~i~~~~~~yf~---Hs~~~~~--  150 (201)
T PRK13143         76 LGICLGMQMLFESSEEGGLTKGLGLIPGRVVRFPPGVKVPHMGWNTVNIVKDCPLFEGIKDGEYFYFV---HSYYADP--  150 (201)
T ss_pred             EEEEHHHHHHHHHCCCCCCCCCCEEECCEEEECCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEEE---EEEEEEE--
T ss_conf             99808986553414026764453686338997365444663442687653268012286655479997---1448982--


Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6998289999889980872686799778983487887767001689999999999
Q gi|254780420|r  336 LPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       336 lp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      .+.+..+...+-  +......+++.++||||||||.+ + .++..++++|+++++
T Consensus       151 ~~~~~~~~~t~~--~~~~~a~i~~~ni~GvQFHPEks-~-~~G~~ilknF~~~~k  201 (201)
T PRK13143        151 DDPDVIVATTDY--GIEFPAVVCKGNVFGTQFHPEKS-G-ETGLKILENFVELIK  201 (201)
T ss_pred             CCCCCEEEEECC--CCEEEEEEECCCEEEEECCCCCC-C-CCHHHHHHHHHHHHC
T ss_conf             798626899619--98089999389899991898236-7-255999999999869


No 33 
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine 
Probab=99.88  E-value=9.8e-23  Score=180.76  Aligned_cols=149  Identities=29%  Similarity=0.463  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHH--CCCCEEEECCCCCC--CC---------------CCCCCCHHHHHHHCC
Q ss_conf             641023222220245413304657446441--35788998588888--41---------------011211012221025
Q gi|254780420|r  215 IRSNLLRVLSSLGCRITIVGAETSYKDIMS--LQPDGVLLSNGPGD--PA---------------VTSVYSSPIICKLVD  275 (396)
Q Consensus       215 iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~--~~pdgi~lSnGPGd--P~---------------~~~~~~~~~~~~~~~  275 (396)
                      +..+.++.+.+.|+...++|+..+..++..  .+.||++||+|+ |  |.               ..+.....+++.+++
T Consensus        20 l~~~y~~~i~~~G~~Pi~iP~~~~~~~~~~~l~~lDGliLtGG~-Di~p~~yg~~~~~~~~~~~~~RD~~E~~l~~~a~~   98 (189)
T cd01745          20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGG-DVDPPLYGEEPHPELGPIDPERDAFELALLRAALE   98 (189)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCC-CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             86999999998799999968999879999999877999972887-78810038877765678886689999999999998


Q ss_pred             CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEE
Q ss_conf             78634786100588787528544667767521011234778970999614576157034369982899998899808726
Q gi|254780420|r  276 SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGF  355 (396)
Q Consensus       276 ~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi  355 (396)
                      .++||||||.|+|+|+.++||+.+.             ++.     +.| .|+++|+  .|++++++++++. |++|||+
T Consensus        99 ~~~PilGICRG~Q~inv~~GGtL~q-------------~i~-----VNS-~H~~~i~--~l~~~l~~~a~~~-dg~iEa~  156 (189)
T cd01745          99 RGKPILGICRGMQLLNVALGGTLYQ-------------DIR-----VNS-LHHQAIK--RLADGLRVEARAP-DGVIEAI  156 (189)
T ss_pred             HCCCCEEEHHHHHHHHHHHCCEEEE-------------CCC-----CCC-CCHHHHH--CCCCCCEEEEECC-CCCEEEE
T ss_conf             0987603505499999995985750-------------340-----576-4100676--0788868999969-9987999


Q ss_pred             EECCCC-EEEECCCCCCCCC-CCCHHHHHHHHH
Q ss_conf             867997-7898348788776-700168999999
Q gi|254780420|r  356 RLIDQP-VFSVQYHPESSPG-PQDSYYLFSTFI  386 (396)
Q Consensus       356 ~~~~~~-~~~vQfHPEa~PG-P~D~~~~F~~F~  386 (396)
                      +|++.| ++|||||||-.+. ......||+.|+
T Consensus       157 ~~~~~~~~~gvqwHPE~~~~~~~~~~~lF~~fv  189 (189)
T cd01745         157 ESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV  189 (189)
T ss_pred             EECCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf             968999089997488678989857889999869


No 34 
>KOG1622 consensus
Probab=99.88  E-value=4.1e-22  Score=176.34  Aligned_cols=174  Identities=24%  Similarity=0.399  Sum_probs=130.5

Q ss_pred             CCEEEEEECCCCCH--HHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             71499996796410--2322222024541330465744644135788998588888410112110122210257863478
Q gi|254780420|r  205 KYHVVCIDYGIRSN--LLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       205 ~~kIvvIDfGiK~n--Ilr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      .-+|+++|||..|+  |-|+++++.+...++|.++++..|.+..|.||+||+||-.-.+  ..+...--.+++.++|+||
T Consensus        16 ~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya--~dAP~~dp~if~~~vpvLG   93 (552)
T KOG1622          16 FDTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYA--EDAPSFDPAIFELGVPVLG   93 (552)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCC--CCCCCCCHHHHCCCCCCEE
T ss_conf             76389994441243788989988754331013777156664479429998189873226--7688898367132774302


Q ss_pred             EECHHHHHHHHCCCCCCC-CC--CCCCCCCCCCEEC--------CC--CEEEEECCCCCEEEEHHHCCCCCEEEEEECCC
Q ss_conf             610058878752854466-77--6752101123477--------89--70999614576157034369982899998899
Q gi|254780420|r  283 ICLGHQLLGLALGAQTVK-MY--QGHHGVNHPVKNI--------SN--GTVEIVSMNHGFAIDASSLPAGLEETHISLFD  349 (396)
Q Consensus       283 IClGhQ~l~~a~G~~~~k-l~--~GhrG~N~Pv~~~--------~t--~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD  349 (396)
                      ||||+|+|+.-+|+.+.| |.  +|-  .|.-|.+.        .+  -.||+|   ||..++.  +|.+|+|-..+.| 
T Consensus        94 ICYGmQ~i~~~~Gg~V~~~~~RE~G~--~eI~v~~~~~lF~~~~~~~~~~Vllt---Hgdsl~~--v~~g~kv~a~s~n-  165 (552)
T KOG1622          94 ICYGMQLINKLNGGTVVKGMVREDGE--DEIEVDDSVDLFSGLHKTEFMTVLLT---HGDSLSK--VPEGFKVVAFSGN-  165 (552)
T ss_pred             EHHHHHHHHHHHCCCCCCCCCCCCCC--CEEECCCHHHHHHHHCCCCEEEEEEC---CCCCHHH--CCCCCEEEEEECC-
T ss_conf             01679999998387502462357787--34775861566543232410366100---5620644--4454246776168-


Q ss_pred             CEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8087268679977898348788776700168999999999
Q gi|254780420|r  350 SSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       350 ~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      .-+.|+.|+.+++||+|||||..--| -...++.+|+--+
T Consensus       166 ~~va~i~~e~kkiyglqfhpEV~~t~-~g~~ll~nFl~~v  204 (552)
T KOG1622         166 KPVAGILNELKKIYGLQFHPEVTLTP-NGKELLKNFLFDV  204 (552)
T ss_pred             CCEEEEHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf             61221101100320678888310367-5668999899987


No 35 
>KOG1224 consensus
Probab=99.87  E-value=6.5e-22  Score=174.93  Aligned_cols=186  Identities=29%  Similarity=0.459  Sum_probs=118.3

Q ss_pred             CCCCEEEEEECC--CCCHHHHHHHHHC-CC-CEEEECCCCHHH----HHH-CCCCEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             777149999679--6410232222202-45-413304657446----441-35788998588888410112110122210
Q gi|254780420|r  203 DAKYHVVCIDYG--IRSNLLRVLSSLG-CR-ITIVGAETSYKD----IMS-LQPDGVLLSNGPGDPAVTSVYSSPIICKL  273 (396)
Q Consensus       203 ~~~~kIvvIDfG--iK~nIlr~L~~~g-~~-v~Vvp~~~~~~~----i~~-~~pdgi~lSnGPGdP~~~~~~~~~~~~~~  273 (396)
                      ..+.++.+||+=  ..+||.|.|.... .- |.++-+++.-+|    +.. .-+|+|++++|||.|. +..... ++.++
T Consensus        12 ~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~-~a~d~g-I~~rl   89 (767)
T KOG1224          12 LPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPM-CAADIG-ICLRL   89 (767)
T ss_pred             HHHEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCC-CHHHHH-HHHHH
T ss_conf             3120288871245412139999987417996799834323778999886400224489668997987-478878-99999


Q ss_pred             C--CCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEE----EC---------CCCCEEEEHHHCCC
Q ss_conf             2--578634786100588787528544667767521011234778970999----61---------45761570343699
Q gi|254780420|r  274 V--DSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEI----VS---------MNHGFAIDASSLPA  338 (396)
Q Consensus       274 ~--~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~i----Ts---------qNHg~~v~~~slp~  338 (396)
                      +  ...|||||||||||.||++.||.+.-..-..||.   |-.+.+++..+    .|         .-|+.-|+  ++|.
T Consensus        90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGr---vs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in--~~pi  164 (767)
T KOG1224          90 LLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGR---VSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIIN--SLPI  164 (767)
T ss_pred             HHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCCCCCE---EEEEEECCCEEECCCCCCCCCCCEEEEEEEEEEC--CCCH
T ss_conf             9865788646543214767653166110378764324---6667726847871577788664404776778725--7761


Q ss_pred             CC-EEEEEECCCC--EEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             82-8999988998--0872686799778983487887767001689999999999735788
Q gi|254780420|r  339 GL-EETHISLFDS--SNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC  396 (396)
Q Consensus       339 ~~-~v~~~~~nD~--tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~~  396 (396)
                      ++ .+....-.|+  .+|+++|+++|.||+||||||.. ..-+..||.+|+++-..+-..|
T Consensus       165 d~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~-s~~g~~lfkNFl~lt~~~n~~c  224 (767)
T KOG1224         165 DLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIA-STYGSQLFKNFLDLTVNYNSRC  224 (767)
T ss_pred             HHHCCEEEEECCCCEEEEEEECCCCCCCCEEECHHHHH-HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             12120137606886289875315788534233707753-1345799987777633675101


No 36 
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87  E-value=7.4e-21  Score=167.52  Aligned_cols=168  Identities=27%  Similarity=0.449  Sum_probs=109.8

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCC
Q ss_conf             4999967964--102322222024541330465744644135788998588888410112-----110122210257863
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMP  279 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iP  279 (396)
                      -|++||+|+-  .+|.|.|.+.|+++.++.   +.+++.+  .|+|+| ||.|.......     ...+.+++.+..++|
T Consensus         2 mI~Iid~g~gNi~si~~al~~lG~~~~ii~---~~~~l~~--~d~lIl-PGvGsf~~~~~~L~~~~l~~~i~~~~~~~~P   75 (204)
T PRK13141          2 MIAIIDYGMGNLHSVSKALERLGAEAIITS---DPEEILA--ADAVIL-PGVGAFPDAMQNLRERGLVEVIKEAVASGKP   75 (204)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHHH--CCEEEE-CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             899997897589999999998699899979---9999840--898998-6887505687764653929999999865996


Q ss_pred             EEEEECHHHHHHHH------------CCCCCCCCCCC------CCCCCC-------CC-EECCC-CEEEEECCCCCEEEE
Q ss_conf             47861005887875------------28544667767------521011-------23-47789-709996145761570
Q gi|254780420|r  280 MFGICLGHQLLGLA------------LGAQTVKMYQG------HHGVNH-------PV-KNISN-GTVEIVSMNHGFAID  332 (396)
Q Consensus       280 ilGIClGhQ~l~~a------------~G~~~~kl~~G------hrG~N~-------Pv-~~~~t-~kv~iTsqNHg~~v~  332 (396)
                      |||||||||+|+..            +.+++.|++.+      |-|.|.       |. .++.. ..+|+.   |+|.|+
T Consensus        76 iLGIClGmQlL~~~s~E~g~~~GLgl~~g~v~~~~~~~~~~vPhiGw~~i~~~~~~~l~~~~~~~~~~yf~---HSy~v~  152 (204)
T PRK13141         76 LLGICLGMQLLFESSEEFGDTEGLGLLPGKVRRFPPGEGLKVPHMGWNQLEFTRPSPLLAGLPEGAYVYFV---HSYYAD  152 (204)
T ss_pred             EEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEE---ECCEEE
T ss_conf             89754989997301310466466543668999778888885651030577611378054167777723786---242783


Q ss_pred             HHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             343699828999988998087268679977898348788776700168999999999
Q gi|254780420|r  333 ASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       333 ~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      .  .+.. .+...+..+..+.+..++ .+++|+|||||.| | ..+..++++|++|+
T Consensus       153 ~--~~~~-~~~a~~~~g~~i~a~i~~-~ni~G~QFHPEkS-~-~~G~~ilknFl~l~  203 (204)
T PRK13141        153 P--PDEE-VVAATCDYGQKFPAAVAK-DNLFGVQFHPEKS-G-DIGLKILKNFLEMV  203 (204)
T ss_pred             C--CCCC-CEEEEECCCCEEEEEEEC-CCEEEEECCCCCC-C-HHHHHHHHHHHHHH
T ss_conf             3--8975-289995599889999971-9999998898514-8-52799999999974


No 37 
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.86  E-value=8e-21  Score=167.29  Aligned_cols=172  Identities=23%  Similarity=0.355  Sum_probs=122.6

Q ss_pred             CHHHHHHHHHCCCCEEEECC-CC---HHHHHHCCCCEEEECCCCCC--CCC-------------CCCCCHHHHHHHCCCC
Q ss_conf             10232222202454133046-57---44644135788998588888--410-------------1121101222102578
Q gi|254780420|r  217 SNLLRVLSSLGCRITIVGAE-TS---YKDIMSLQPDGVLLSNGPGD--PAV-------------TSVYSSPIICKLVDSG  277 (396)
Q Consensus       217 ~nIlr~L~~~g~~v~Vvp~~-~~---~~~i~~~~pdgi~lSnGPGd--P~~-------------~~~~~~~~~~~~~~~~  277 (396)
                      ..=++.+.+.|.-..++|+. .+   +++++. .-||++|++||+|  |.-             .+.....+++..++.+
T Consensus        29 ~~Y~~ai~~aGgiPvllP~~~~~~~~~~~~l~-~lDGllltGG~~Di~P~~Yge~~~~~~~dp~RD~~E~~L~~~A~~~~  107 (254)
T PRK11366         29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLP-KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERR  107 (254)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH-HCCEEEECCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999829858984888788789999998-78989968998988942368898888888421299999999999859


Q ss_pred             CCEEEEECHHHHHHHHCCCCCCC-C---C--CCCCC-----------CCCCCEECC----------CCEEEEECCCCCEE
Q ss_conf             63478610058878752854466-7---7--67521-----------011234778----------97099961457615
Q gi|254780420|r  278 MPMFGICLGHQLLGLALGAQTVK-M---Y--QGHHG-----------VNHPVKNIS----------NGTVEIVSMNHGFA  330 (396)
Q Consensus       278 iPilGIClGhQ~l~~a~G~~~~k-l---~--~GhrG-----------~N~Pv~~~~----------t~kv~iTsqNHg~~  330 (396)
                      +||||||.|+|+|..|+||+.+. +   +  ..||-           ..|+|.-..          ..++++.|. |..+
T Consensus       108 ~PiLGICRG~Q~lNVa~GGtL~qdl~~~~~~~~H~~~~~~~~~~~~~~~H~V~i~~~s~L~~i~~~~~~~~VNS~-HhQa  186 (254)
T PRK11366        108 IPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFWVNSL-HGQG  186 (254)
T ss_pred             CCEEEECHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCEEEECH-HHHH
T ss_conf             997986035589998738864422003765234456888985433256411898689869997489870587421-3543


Q ss_pred             EEHHHCCCCCEEEEEECCCCEEEEEEECCCCE-EEECCCCCCCCCC-CCHHHHHHHHHHHHHHHC
Q ss_conf             70343699828999988998087268679977-8983487887767-001689999999999735
Q gi|254780420|r  331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPV-FSVQYHPESSPGP-QDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       331 v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~-~~vQfHPEa~PGP-~D~~~~F~~F~~~i~~~k  393 (396)
                      |+  .|.++|.|++++. ||+||++++++.++ +|||||||-..-. -....||+.|++-.++++
T Consensus       187 v~--~lg~gl~v~A~a~-DG~IEAie~~~~~f~lGVQWHPE~~~~~~~~~~~LF~aFv~a~r~~~  248 (254)
T PRK11366        187 AK--VVSPRLRVEARSP-DGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHI  248 (254)
T ss_pred             HH--CCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             31--3377738999908-99779999579985899970887787678678999999999999999


No 38 
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86  E-value=3e-21  Score=170.29  Aligned_cols=164  Identities=25%  Similarity=0.416  Sum_probs=106.0

Q ss_pred             EEEEECCCCC--HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCCE
Q ss_conf             9999679641--02322222024541330465744644135788998588888410112-----1101222102578634
Q gi|254780420|r  208 VVCIDYGIRS--NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iPi  280 (396)
                      |++||||.-+  +|.|.|++.|+++.++.   +.+++.  +.|+|+| ||+|.......     ...+.+++.++.++||
T Consensus         1 I~IiD~G~~ni~si~~~l~~lg~~~~ii~---~~~~l~--~~d~iIl-PGvG~f~~~~~~l~~~~~~~~i~~~~~~~~Pi   74 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITS---DPEEIL--SADKLIL-PGVGAFGDAMANLRERGLIEALKEAIASGKPF   74 (198)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--HCCEEEE-CCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCE
T ss_conf             99997697789999999998799299979---999983--0898998-78874034444410038199999998769968


Q ss_pred             EEEECHHHHHHHH------------CCCCCCCCCCC------CCCCCC-------CC-EECC-CCEEEEECCCCCEEEEH
Q ss_conf             7861005887875------------28544667767------521011-------23-4778-97099961457615703
Q gi|254780420|r  281 FGICLGHQLLGLA------------LGAQTVKMYQG------HHGVNH-------PV-KNIS-NGTVEIVSMNHGFAIDA  333 (396)
Q Consensus       281 lGIClGhQ~l~~a------------~G~~~~kl~~G------hrG~N~-------Pv-~~~~-t~kv~iTsqNHg~~v~~  333 (396)
                      ||||||||+|+..            +++++.|++..      |-|.|.       |. .++. ..++|+   +|+|.|..
T Consensus        75 LGIClG~QlL~~~s~E~~~~~gLg~~~g~V~~~~~~~~~~iP~iGwn~i~~~~~~~~~~~~~~~~~~yF---~HS~~v~~  151 (198)
T cd01748          75 LGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDGSYFYF---VHSYYAPP  151 (198)
T ss_pred             EEEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCEEEE---EECCEEEC
T ss_conf             999811454666765068635536554099988777788664112246750336803207776753588---62417752


Q ss_pred             HHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             43699828999988998087268679977898348788776700168999999
Q gi|254780420|r  334 SSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       334 ~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                         +....+....-.+..+... +++.+++|||||||.| |. .+..|+++|+
T Consensus       152 ---~~~~~~~a~~~~~~~~~a~-i~~~ni~GvQFHPEkS-~~-~G~~ll~nFl  198 (198)
T cd01748         152 ---DDPDYILATTDYGGKFPAA-VEKDNIFGTQFHPEKS-GK-AGLKLLKNFL  198 (198)
T ss_pred             ---CCCCEEEEEECCCCEEEEE-EECCCEEEEECCCCCC-CH-HHHHHHHHHC
T ss_conf             ---8975068897599839999-9879999997898524-76-0899999539


No 39 
>PRK13175 consensus
Probab=99.86  E-value=2.2e-20  Score=164.21  Aligned_cols=171  Identities=27%  Similarity=0.447  Sum_probs=111.5

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCC--CCC--CC-CCCHHHHHHHCCCCC
Q ss_conf             14999967964--102322222024541330465744644135788998588888--410--11-211012221025786
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGD--PAV--TS-VYSSPIICKLVDSGM  278 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGd--P~~--~~-~~~~~~~~~~~~~~i  278 (396)
                      .+|++||||.-  ++|.|.|++.|+++.++.   +.+++.  +.|+|+|+ |-|.  ++.  .. ....+.+++.++.++
T Consensus         2 ~kI~IiD~g~gn~~si~~al~~lg~~~~i~~---~~~~i~--~~d~lILP-GvGsf~~~~~~l~~~~l~~~i~~~~~~g~   75 (206)
T PRK13175          2 PKIAVIDYGMGNLHSVCKALERLGAEPILTS---DPADLL--AADALILP-GVGAFDPAMQNLRSRGLIPPIKDAIASGK   75 (206)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--CCCEEEEC-CCCCCHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             8799997997689999999998799899979---989983--28928968-99852678875553187168999985699


Q ss_pred             CEEEEECHHHHHHHH-----------CCCCCCCCC------CCCCCCCC-------CC-EECCC-CEEEEECCCCCEEEE
Q ss_conf             347861005887875-----------285446677------67521011-------23-47789-709996145761570
Q gi|254780420|r  279 PMFGICLGHQLLGLA-----------LGAQTVKMY------QGHHGVNH-------PV-KNISN-GTVEIVSMNHGFAID  332 (396)
Q Consensus       279 PilGIClGhQ~l~~a-----------~G~~~~kl~------~GhrG~N~-------Pv-~~~~t-~kv~iTsqNHg~~v~  332 (396)
                      ||||||||||+|+..           +++++.|++      ..|-|.|.       |+ +++.. ..+|+.   |+|.+.
T Consensus        76 PiLGIClGmQlL~~~seeg~~~GLgli~g~V~k~~~~~~~~iPh~Gw~~i~~~~~~~l~~~~~~~~~~yf~---HSy~~~  152 (206)
T PRK13175         76 PFLGICLGLQLLFESSEEGTEPGLGILPGKVQRFPSEPGLRIPHMGWNQLLTQPDCPLWENLPPNPWVYFV---HSYYAV  152 (206)
T ss_pred             CEEEEEHHHHHHHHCCCCCCCCCCCEECEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEE---ECCEEE
T ss_conf             77998678667613253456477635210798626555533761045057851788420112678823897---500784


Q ss_pred             HHHCCCCCEEEEEECCC-CEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34369982899998899-808726867997789834878877670016899999999997
Q gi|254780420|r  333 ASSLPAGLEETHISLFD-SSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       333 ~~slp~~~~v~~~~~nD-~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      +.  +..+.+....-.+ .-+.+++  ..+++|+|||||.| |+ .+..|+++|++++++
T Consensus       153 ~~--~~~~~~~~~~~~~~~~~a~v~--~~ni~G~QFHPEkS-~~-~G~~llknFl~~v~k  206 (206)
T PRK13175        153 PL--DPSDTAATVTHGSQKVTAAIA--RDNLMAVQFHPEKS-GT-AGLKLLRNFVSQVQK  206 (206)
T ss_pred             EC--CCCCEEEEEECCCCCEEEEEE--CCCEEEEECCCCCC-CC-CHHHHHHHHHHHHHC
T ss_conf             06--876269999608983899997--89999994898246-84-378999999999649


No 40 
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine 
Probab=99.86  E-value=7.5e-21  Score=167.48  Aligned_cols=166  Identities=27%  Similarity=0.379  Sum_probs=107.3

Q ss_pred             EEEEEECCCC---CHHHHHHHHHC---CCCEEEECCCC--HHHHHHCCCCEEEECCCCCCCCCCCC----CCHHHHHHHC
Q ss_conf             4999967964---10232222202---45413304657--44644135788998588888410112----1101222102
Q gi|254780420|r  207 HVVCIDYGIR---SNLLRVLSSLG---CRITIVGAETS--YKDIMSLQPDGVLLSNGPGDPAVTSV----YSSPIICKLV  274 (396)
Q Consensus       207 kIvvIDfGiK---~nIlr~L~~~g---~~v~Vvp~~~~--~~~i~~~~pdgi~lSnGPGdP~~~~~----~~~~~~~~~~  274 (396)
                      ||++|.+..-   ......|++++   .++.++.....  ..++  .++|||++|+||.++.....    .....+++++
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dgvii~Gg~~~~~~~~~pwi~~~~~~i~~~~   78 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQAL   78 (188)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH--HHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98999779999974899999966998468999966669899784--4408899969987778678866999999999999


Q ss_pred             CCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCE----------EEEECCCCCEEEEHHHCCCCCEEEE
Q ss_conf             578634786100588787528544667767521011234778970----------9996145761570343699828999
Q gi|254780420|r  275 DSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT----------VEIVSMNHGFAIDASSLPAGLEETH  344 (396)
Q Consensus       275 ~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~k----------v~iTsqNHg~~v~~~slp~~~~v~~  344 (396)
                      +.++||||||+|||+||.|+||++.+.+.|....-+++.-...++          -+..-|.|+..|..  ||.+.++++
T Consensus        79 ~~~~PilGIC~G~Qlla~alGg~V~~~~~~~e~G~~~i~lt~~~~~~~~~~~~~~~~~~~~~H~d~v~~--lP~~~~~la  156 (188)
T cd01741          79 AAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE--LPPGAVLLA  156 (188)
T ss_pred             HCCCCEEEECHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHEEEEE--CCCCCEEEE
T ss_conf             879999998468999999839999878987521579999954766542214799765434021027243--899989999


Q ss_pred             EECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988998087268679977898348788776700168999999
Q gi|254780420|r  345 ISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       345 ~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                      .|. +..++++++++ .+||||||||        ..++.+|+
T Consensus       157 ~s~-~~~~qa~~~~~-~~~g~QfHPE--------~~~~~~f~  188 (188)
T cd01741         157 SSE-ACPNQAFRYGD-RALGLQFHPE--------ERLLRNFL  188 (188)
T ss_pred             ECC-CCCEEEEEECC-EEEEEECCCC--------HHHHHHCC
T ss_conf             889-99788999799-5899957612--------76676309


No 41 
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=99.85  E-value=5.3e-21  Score=168.51  Aligned_cols=149  Identities=26%  Similarity=0.414  Sum_probs=107.2

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHH--CCCCEEEECCCCCC--CCC---------------CCCCCHHHHHHHCCCCC
Q ss_conf             023222220245413304657446441--35788998588888--410---------------11211012221025786
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMS--LQPDGVLLSNGPGD--PAV---------------TSVYSSPIICKLVDSGM  278 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~--~~pdgi~lSnGPGd--P~~---------------~~~~~~~~~~~~~~~~i  278 (396)
                      +-++.+.+.|+.+.++|++.+.+++..  ..-|||+|++|+-|  |..               .+.....+++..++.++
T Consensus        28 ~Yv~~i~~aGg~pv~iP~~~~~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~~~~~~~~Rd~~e~~l~~~a~~~~~  107 (219)
T pfam07722        28 SYVKAVEGAGGLPVLLPILEDPEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGK  107 (219)
T ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             99999998599999978999989999999767989985988767822146776866787578889999999999987699


Q ss_pred             CEEEEECHHHHHHHHCCCCCCCCC---CC---C-------CCCCCCCEECCC---------CEEEEECCCCCEEEEHHHC
Q ss_conf             347861005887875285446677---67---5-------210112347789---------7099961457615703436
Q gi|254780420|r  279 PMFGICLGHQLLGLALGAQTVKMY---QG---H-------HGVNHPVKNISN---------GTVEIVSMNHGFAIDASSL  336 (396)
Q Consensus       279 PilGIClGhQ~l~~a~G~~~~kl~---~G---h-------rG~N~Pv~~~~t---------~kv~iTsqNHg~~v~~~sl  336 (396)
                      ||||||+|||+|..++|++.++--   .+   |       ...+|+|.-...         .++. +...|.++|+  .|
T Consensus       108 PilGICrG~Qllnv~~GGtL~q~i~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~~~~-vnS~Hhq~I~--~l  184 (219)
T pfam07722       108 PILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLARLLGAEEIL-VNSLHHQAIK--RL  184 (219)
T ss_pred             CEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEE-EECCHHHHHH--CC
T ss_conf             87997650899999967830002301257544566887642560389977897399872998457-9745065774--04


Q ss_pred             CCCCEEEEEECCCCEEEEEEECCC--CEEEECCCCC
Q ss_conf             998289999889980872686799--7789834878
Q gi|254780420|r  337 PAGLEETHISLFDSSNCGFRLIDQ--PVFSVQYHPE  370 (396)
Q Consensus       337 p~~~~v~~~~~nD~tiegi~~~~~--~~~~vQfHPE  370 (396)
                      +++|++++++. ||+||++++++.  +++|||||||
T Consensus       185 ~~~l~v~A~a~-Dg~iEaie~~~~~~f~~GVQwHPE  219 (219)
T pfam07722       185 APGLRVEATAP-DGTIEAIESPNAPYFVLGVQWHPE  219 (219)
T ss_pred             CCCCEEEEEEC-CCCEEEEEECCCCCCEEEEEECCC
T ss_conf             89858999948-997899996699986799972889


No 42 
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84  E-value=9.8e-21  Score=166.65  Aligned_cols=166  Identities=25%  Similarity=0.440  Sum_probs=106.4

Q ss_pred             EEEEECCCCC--HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCC----C-CCCHHHHHHHCCCCCCE
Q ss_conf             9999679641--023222220245413304657446441357889985888884101----1-21101222102578634
Q gi|254780420|r  208 VVCIDYGIRS--NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVT----S-VYSSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~----~-~~~~~~~~~~~~~~iPi  280 (396)
                      |++||||.-+  +|.|.|++.|+++.+++   +.+++.  +.|+++|+ |.|-....    . ....+.+++.++.++||
T Consensus         2 I~IiD~G~~n~~si~r~l~~lg~~~~i~~---~~~~l~--~~d~lIlP-GvG~~~~~~~~l~~~~~~~~i~~~~~~~~Pi   75 (199)
T PRK13181          2 IAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEIE--GADKVILP-GVGAFGQAMAALRESGLDEAIKEHVEKKQPV   75 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEC---CHHHHH--HHHCEECC-CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             99998896099999999998698099979---999974--21100457-9865330256665638679999999769988


Q ss_pred             EEEECHHHHHHHH-----------CCCCCCCCCCC-----CCCCCC-------CC-EECCC-CEEEEECCCCCEEEEHHH
Q ss_conf             7861005887875-----------28544667767-----521011-------23-47789-709996145761570343
Q gi|254780420|r  281 FGICLGHQLLGLA-----------LGAQTVKMYQG-----HHGVNH-------PV-KNISN-GTVEIVSMNHGFAIDASS  335 (396)
Q Consensus       281 lGIClGhQ~l~~a-----------~G~~~~kl~~G-----hrG~N~-------Pv-~~~~t-~kv~iTsqNHg~~v~~~s  335 (396)
                      ||||||||+|+..           +++++.|++.+     |-|.|.       |. +++.. ..+|+   +|+|.|+.. 
T Consensus        76 LGIClGmQlL~~~~~eg~~~GLgl~~g~v~~~~~~~~~~phiGw~~i~~~~~~~lf~~~~~~~~~yf---~Hs~~v~~~-  151 (199)
T PRK13181         76 LGICLGMQLLCESSEEGNVKGLGLIPGDVKRFRSGKDKVPQMGWNSVKPLKESPLFKGIEENSRFYF---VHSYYVPPE-  151 (199)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCEECCEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEE---EEEEEEECC-
T ss_conf             9980426765410003654666662128998277655557777458876216844537655560488---850378617-


Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             69982899998899808726867997789834878877670016899999999
Q gi|254780420|r  336 LPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       336 lp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                       +.+. +....-.+..+. ...+..++||||||||.+ + ..+..++++|++|
T Consensus       152 -~~~~-~~a~~~~g~~~~-~~v~~~ni~GvQFHPE~s-~-~~G~~il~nFl~i  199 (199)
T PRK13181        152 -DPED-VLATTNYGVPFC-SAVEKDNIYAVQFHPEKS-G-KAGLKLLKNFAEL  199 (199)
T ss_pred             -CCCC-EEEEECCCCEEE-EEEECCCEEEEECCCCCC-C-HHHHHHHHHHHCC
T ss_conf             -8763-279963898499-999899999990897817-8-6099999998669


No 43 
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.79  E-value=1.3e-18  Score=151.68  Aligned_cols=167  Identities=25%  Similarity=0.395  Sum_probs=115.6

Q ss_pred             HHHHHHHCCCCEEEECCCCH---HHHHHCCCCEEEECCCCCC--C---------C------CCCCCCHHHHHHHCCCCCC
Q ss_conf             32222202454133046574---4644135788998588888--4---------1------0112110122210257863
Q gi|254780420|r  220 LRVLSSLGCRITIVGAETSY---KDIMSLQPDGVLLSNGPGD--P---------A------VTSVYSSPIICKLVDSGMP  279 (396)
Q Consensus       220 lr~L~~~g~~v~Vvp~~~~~---~~i~~~~pdgi~lSnGPGd--P---------~------~~~~~~~~~~~~~~~~~iP  279 (396)
                      ++...+.|--..++|.-.+.   .+++. .-||++||+| .|  |         +      ..+.+...++++.++.++|
T Consensus        32 v~ai~~aGg~pillP~~~d~~~~~~~l~-~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iP  109 (243)
T COG2071          32 VDAIIKAGGIPILLPALEDPEDARQYLD-LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIP  109 (243)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHH-HCCEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             9999976995088548887778999986-5367895289-8689878398888556778843007789999999976998


Q ss_pred             EEEEECHHHHHHHHCCCCCCCCC---C---CCCCC------CCCCEECCCC--------E-EEEECCCCCEEEEHHHCCC
Q ss_conf             47861005887875285446677---6---75210------1123477897--------0-9996145761570343699
Q gi|254780420|r  280 MFGICLGHQLLGLALGAQTVKMY---Q---GHHGV------NHPVKNISNG--------T-VEIVSMNHGFAIDASSLPA  338 (396)
Q Consensus       280 ilGIClGhQ~l~~a~G~~~~kl~---~---GhrG~------N~Pv~~~~t~--------k-v~iTsqNHg~~v~~~slp~  338 (396)
                      |||||.|.|+|..|+||..++=-   -   .||-.      .|+|.-....        . +.+-|- |.++|+  .|..
T Consensus       110 ILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~~~~VNS~-HhQaIk--~La~  186 (243)
T COG2071         110 ILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMVNSF-HHQAIK--KLAP  186 (243)
T ss_pred             EEEECCCHHHHHHHHCCEEEHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCEEECCH-HHHHHH--HHCC
T ss_conf             8998401578878756753021230545002569998654315799547841777537652263151-778999--7678


Q ss_pred             CCEEEEEECCCCEEEEEEECC-CCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             828999988998087268679-97789834878877670-0168999999999973
Q gi|254780420|r  339 GLEETHISLFDSSNCGFRLID-QPVFSVQYHPESSPGPQ-DSYYLFSTFIDFMHKR  392 (396)
Q Consensus       339 ~~~v~~~~~nD~tiegi~~~~-~~~~~vQfHPEa~PGP~-D~~~~F~~F~~~i~~~  392 (396)
                      +|+|+++.. ||+||++++++ ..+.|||||||-...-. -...||+.|+.--+++
T Consensus       187 ~L~V~A~a~-DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~  241 (243)
T COG2071         187 GLVVEARAP-DGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH  241 (243)
T ss_pred             CCEEEEECC-CCCEEEEEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             867999979-9958989853885079986175552267868899999999998751


No 44 
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.77  E-value=6.6e-18  Score=146.76  Aligned_cols=162  Identities=21%  Similarity=0.265  Sum_probs=100.8

Q ss_pred             CEEEEEECCCCCH------------HHHHHHHHCCCCEEEECC--CCHHHHHHCCCCEEEECCCCCCCCCCCC---CCHH
Q ss_conf             1499996796410------------232222202454133046--5744644135788998588888410112---1101
Q gi|254780420|r  206 YHVVCIDYGIRSN------------LLRVLSSLGCRITIVGAE--TSYKDIMSLQPDGVLLSNGPGDPAVTSV---YSSP  268 (396)
Q Consensus       206 ~kIvvIDfGiK~n------------Ilr~L~~~g~~v~Vvp~~--~~~~~i~~~~pdgi~lSnGPGdP~~~~~---~~~~  268 (396)
                      +||++|-||--..            +.+.|...+..++++...  -.+.++  .++||++++++|-.-.+...   ...+
T Consensus         4 ~ki~IL~~g~~~~~~~~~~G~y~~~f~~ll~~~~~~~~~~~v~~ge~~p~~--~~~dg~iitGS~~~v~d~~pWi~~l~~   81 (238)
T PRK09065          4 LPLLIIETGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVDVFAGEPLPAP--EDFAGVLITGSHAMVTDRAPWSERTAD   81 (238)
T ss_pred             CEEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCH--HHCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             169999889898799987399899999987236985799967279899895--784889997985205799888999999


Q ss_pred             HHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCE----------EEEECCCCCEEEEHHHCCC
Q ss_conf             222102578634786100588787528544667767521011234778970----------9996145761570343699
Q gi|254780420|r  269 IICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT----------VEIVSMNHGFAIDASSLPA  338 (396)
Q Consensus       269 ~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~k----------v~iTsqNHg~~v~~~slp~  338 (396)
                      .++.+++.++||||||+|||+||.|+||++.+-+.|..-.-++|.-...++          .+-.-|.|...|.  .||+
T Consensus        82 ~ir~~~~~~~PilGICfGhQllA~AlGG~V~~~p~G~eiG~~~v~lt~~g~~dplf~~~p~~~~~~~~H~D~V~--~lP~  159 (238)
T PRK09065         82 WLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVALELHPAAAQDPLFAGLPATFPAHATHLQTVL--RLPP  159 (238)
T ss_pred             HHHHHHHCCCCEEEEEHHHHHHHHHHCCEEEECCCCCCCCEEEEEECHHCCCCCHHCCCCCCCEEEEEEECEEE--ECCC
T ss_conf             99999877999999817789999984987976799763651256875100457111189876179999514289--6499


Q ss_pred             CCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCC
Q ss_conf             82899998899808726867997789834878877
Q gi|254780420|r  339 GLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP  373 (396)
Q Consensus       339 ~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~P  373 (396)
                      +.++.+.|.. .-+++++..+ .+||||||||-+|
T Consensus       160 ga~~LAss~~-c~~qa~~~g~-~~~gvQfHPEft~  192 (238)
T PRK09065        160 GAVVLARSAH-DPHQAFRYGP-SAWGVQFHPEFTA  192 (238)
T ss_pred             CEEEEEECCC-CHHHHEEECC-CEEEEECCCCCCH
T ss_conf             8389980999-9057178589-4899956862899


No 45 
>PRK13180 consensus
Probab=99.75  E-value=2.2e-17  Score=143.11  Aligned_cols=172  Identities=23%  Similarity=0.359  Sum_probs=106.2

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECC-CCCCCCC--C-CCCCHHHHHHHCCCCCC
Q ss_conf             14999967964--10232222202454133046574464413578899858-8888410--1-12110122210257863
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSN-GPGDPAV--T-SVYSSPIICKLVDSGMP  279 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSn-GPGdP~~--~-~~~~~~~~~~~~~~~iP  279 (396)
                      .+|++||+|+=  .++.|.|.++|+++.++   .+.+++.  +.|+|+|.+ |.=+...  . .....+.+++.++.++|
T Consensus         2 kkI~IiDyg~gNi~Sv~~al~~~g~~~~i~---~~~~~~~--~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~gkp   76 (209)
T PRK13180          2 KRVVVLDYGSGNLRSAQRALERVGAEVEVT---ADPDAAL--NADGLVVPGVGAFAACMAGLRAVGGDRIIGERLAAGRP   76 (209)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             779999789438999999999869989997---9999995--38968999988557777765536919999999976998


Q ss_pred             EEEEECHHHHHHHH---CC----------CCCCCCC---CCCCCCCC-------CC-EECC-CCEEEEECCCCCEEEEHH
Q ss_conf             47861005887875---28----------5446677---67521011-------23-4778-970999614576157034
Q gi|254780420|r  280 MFGICLGHQLLGLA---LG----------AQTVKMY---QGHHGVNH-------PV-KNIS-NGTVEIVSMNHGFAIDAS  334 (396)
Q Consensus       280 ilGIClGhQ~l~~a---~G----------~~~~kl~---~GhrG~N~-------Pv-~~~~-t~kv~iTsqNHg~~v~~~  334 (396)
                      |||||||+|+|+..   .|          +++.|++   ..|-|.|.       +. ..+. ..+.|+.   |+|+|...
T Consensus        77 iLGIClGMQlL~~~s~E~g~~~~GLg~i~G~v~~l~~~~vPh~GWn~v~~~~~~~l~~~i~~~~~fYFv---HSy~v~~~  153 (209)
T PRK13180         77 VLGICVGMQILFERGVEHGVETEGCGEWPGTVERLDAPVLPHMGWNTVEAPAGSVLFAGLDADERFYFV---HSYAAQRW  153 (209)
T ss_pred             EEEEEEHEEEEEECEECCCCCCCCCCEECCEEEECCCCCCCCCCCEEEECCCCCHHHHCCCCCCCEEEE---CEEEECCC
T ss_conf             799841208887031116767788136550899778887873565577706776354088858958896---85266345


Q ss_pred             HCC-----CCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             369-----9828999988998087268679977898348788776700168999999999
Q gi|254780420|r  335 SLP-----AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       335 slp-----~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      ..+     ....++...-...-+.+++  +.+++|||||||-|.  ..+..|+++|++.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~g~~~~aav~--~~ni~G~QFHPEKS~--~~Gl~ll~nFl~~~  209 (209)
T PRK13180        154 EGSPDPRTAPPLVTWATHGAPFVAAVE--NGPLSATQFHPEKSG--DAGAALLRNWVDTL  209 (209)
T ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEEE--CCCEEEEECCCCCCC--HHHHHHHHHHHHHC
T ss_conf             655565665535899847982699998--299999939963267--73899999998639


No 46 
>PRK13144 consensus
Probab=99.75  E-value=3.7e-17  Score=141.48  Aligned_cols=165  Identities=19%  Similarity=0.294  Sum_probs=107.9

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             4999967964--10232222202454133046574464413578899858888841011211012221025786347861
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ||++||+|+=  .|+.+.|...|+++.+.   .+.+++.  +.|+|+| ||.|....... ....+++++. +.||||||
T Consensus         2 kI~IiDyg~GNi~Sv~~al~~~g~~~~i~---~~~~~i~--~~d~lIl-PGVGsf~~a~~-~~~~~~~~i~-~kpiLGIC   73 (190)
T PRK13144          2 RVGVVDYTVGNIGSVLAALKRAGAEPVVV---KEPEEAN--RVDALVL-PGVGTYEAAYA-LARSFKEVIL-EKPTLAIC   73 (190)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHH-HHHHHHHHHH-CCCEEEEE
T ss_conf             89999279368999999999849986997---8999995--4897897-48885999999-9999999974-79848987


Q ss_pred             CHHHHHHHHCC-----------CCCCCC---CCCCCCCCCCCEE------CCCCEEEEECCCCCEEEEHHHCCCCCEEEE
Q ss_conf             00588787528-----------544667---7675210112347------789709996145761570343699828999
Q gi|254780420|r  285 LGHQLLGLALG-----------AQTVKM---YQGHHGVNHPVKN------ISNGTVEIVSMNHGFAIDASSLPAGLEETH  344 (396)
Q Consensus       285 lGhQ~l~~a~G-----------~~~~kl---~~GhrG~N~Pv~~------~~t~kv~iTsqNHg~~v~~~slp~~~~v~~  344 (396)
                      ||+|+|....-           +++.|+   +..|-|.|. |+.      +..+..|..   |+|.+..+  +....+..
T Consensus        74 lGmQlL~~~seE~~~~GLgli~G~v~kl~~~kvPh~GWn~-v~~~~~~~~~~~~~fYFv---HSY~~~~~--~~~~~~~~  147 (190)
T PRK13144         74 LGMQLLFESSEEGGGRGLGIFRGRVERIKARKVPHIGWSY-TRVVKPLPFVEEGYYYYL---HSYGVRWD--EDEAHVAY  147 (190)
T ss_pred             HHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCE-EECCCCCCCCCCCEEEEE---EEEEECCC--CCCCEEEE
T ss_conf             6588664456334787630797699987888887636600-034678876445559999---98872268--87648999


Q ss_pred             EECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             988998087268679977898348788776700168999999999
Q gi|254780420|r  345 ISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       345 ~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      .+....-+..+.  ..+++|||||||-|.  ..+..|.++|+.--
T Consensus       148 ~~~g~~~~s~v~--~~Ni~G~QFHPEKS~--~~Gl~lLknFl~~~  188 (190)
T PRK13144        148 VELGRRYVAAVE--KGHILGVQFHPERSG--RAGLELIRRFLAAW  188 (190)
T ss_pred             EECCCEEEEEEE--ECCEEEEECCCHHCC--HHHHHHHHHHHHHH
T ss_conf             975997899999--598999978800215--86899999999995


No 47 
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.74  E-value=2.2e-17  Score=143.09  Aligned_cols=164  Identities=24%  Similarity=0.383  Sum_probs=103.0

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC-----HHHHH-HHCCCCCC
Q ss_conf             999967964--10232222202454133046574464413578899858888841011211-----01222-10257863
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS-----SPIIC-KLVDSGMP  279 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~-----~~~~~-~~~~~~iP  279 (396)
                      |++||+|+=  .++.|.|...|+++.++   .+.+++.  +.|+|+| ||-|.-...-...     .+.++ .++..++|
T Consensus         2 I~IiDyg~gNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIl-PGVGsf~~~m~~L~~~~l~~~i~~~~~~~~~p   75 (201)
T PRK13152          2 IALIDYKAGNLNSVAKAFEKIGAINFIA---KNPKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKP   75 (201)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             9999559427999999999869988997---8999996--5895898-28884999998777518588999999876996


Q ss_pred             EEEEECHHHHHHHH-------CC-----CCCCCC------CCCCCCCCC-------CC-EECCC-CEEEEECCCCCEEEE
Q ss_conf             47861005887875-------28-----544667------767521011-------23-47789-709996145761570
Q gi|254780420|r  280 MFGICLGHQLLGLA-------LG-----AQTVKM------YQGHHGVNH-------PV-KNISN-GTVEIVSMNHGFAID  332 (396)
Q Consensus       280 ilGIClGhQ~l~~a-------~G-----~~~~kl------~~GhrG~N~-------Pv-~~~~t-~kv~iTsqNHg~~v~  332 (396)
                      |||||||||+|+..       -|     +++.|+      +..|-|.|.       |. .++.+ ...|+.   |+|.+.
T Consensus        76 iLGIClGmQlL~~~s~E~~~~~GLg~i~G~v~kl~~~~~~kvPhiGWn~v~~~~~~~l~~~~~~~~~fYF~---HSy~v~  152 (201)
T PRK13152         76 ILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIPNKSDFYFV---HSFYVK  152 (201)
T ss_pred             EEEEEHHHEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHCCCCCCCEEEEE---EEEEEC
T ss_conf             69985213462104243786365589976999867776766663225898603479756388766719997---200623


Q ss_pred             HHHCCCCCEEEEEEC-CCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             343699828999988-99808726867997789834878877670016899999999
Q gi|254780420|r  333 ASSLPAGLEETHISL-FDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       333 ~~slp~~~~v~~~~~-nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      ..  ++.  ++...- .+.-+.+++  ..++||+|||||-|.  ..+..|.++|++|
T Consensus       153 ~~--~~~--~~~~~~yg~~~~aav~--~~Ni~G~QFHPEKS~--~~Gl~lLknFl~l  201 (201)
T PRK13152        153 CK--DEF--VSAKAQYGHKFVASLQ--KDHIFATQFHPEKSQ--NLGLKLLENFLRL  201 (201)
T ss_pred             CC--CCC--EEEEEECCCEEEEEEE--ECCEEEEECCCCCCC--HHHHHHHHHHHCC
T ss_conf             68--874--8999984998999998--499999918941167--7589999999749


No 48 
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.74  E-value=7.1e-18  Score=146.51  Aligned_cols=150  Identities=26%  Similarity=0.401  Sum_probs=102.3

Q ss_pred             HHHHHHHHHCCCCEEEECCC-CHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf             02322222024541330465-744644135788998588888410112-----110122210257863478610058878
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAET-SYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~-~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iPilGIClGhQ~l~  291 (396)
                      .|.+.|.++|+.+.++.... ...--...++|++++-+||=++.+.+.     .....++..++.++|+||||||||+||
T Consensus        18 ~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a~~~~~PvLGIClG~QLlA   97 (235)
T PRK07053         18 SFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQRLAAGLPTLGICLGAQLIA   97 (235)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf             99999997899599996788988999966679999938998988776685589999999999986998899847389999


Q ss_pred             HHCCCCCCCCCCCCCCC----------CCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             75285446677675210----------11234778970999614576157034369982899998899808726867997
Q gi|254780420|r  292 LALGAQTVKMYQGHHGV----------NHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP  361 (396)
Q Consensus       292 ~a~G~~~~kl~~GhrG~----------N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~  361 (396)
                      .|+||++++.+....|.          ..|+....... ...-|-|+.++   +||++.++.+.|- +-.+++++.. ..
T Consensus        98 ~AlGG~V~~~~~~EiG~~~v~~t~~~~~dpl~~~~~~~-~~v~~wH~D~~---~LP~ga~~LAss~-~c~~Qaf~~g-~~  171 (235)
T PRK07053         98 RALGARVYPGAQKEIGWAPLTLTDAGRASPLRHLDGAD-TPVLHWHGDTF---DLPEGAILLASTP-ACRNQAFAWG-NH  171 (235)
T ss_pred             HHHCCEEECCCCCCEEEEEEEECCCCCCCCHHCCCCCC-CEEEEEECEEE---ECCCCCEEEECCC-CCHHHHEEEC-CC
T ss_conf             97097786089960058877855123577000148767-72799954085---3499838998289-9858967847-96


Q ss_pred             EEEECCCCCCCC
Q ss_conf             789834878877
Q gi|254780420|r  362 VFSVQYHPESSP  373 (396)
Q Consensus       362 ~~~vQfHPEa~P  373 (396)
                      +||+|||||..|
T Consensus       172 ~~g~QFHpE~t~  183 (235)
T PRK07053        172 VLALQFHPEIRA  183 (235)
T ss_pred             EEEEECCEECCH
T ss_conf             899965846888


No 49 
>PRK13177 consensus
Probab=99.74  E-value=3.9e-17  Score=141.29  Aligned_cols=164  Identities=24%  Similarity=0.405  Sum_probs=101.6

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC--C----C---CCCCHHHHHHHC
Q ss_conf             14999967964--10232222202454133046574464413578899858888841--0----1---121101222102
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA--V----T---SVYSSPIICKLV  274 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~--~----~---~~~~~~~~~~~~  274 (396)
                      .+|++||+|+=  .++.+.|...|++..++-  .+.++|.  +.|.|+|   ||-=+  .    .   ......+.+..+
T Consensus         3 ~~I~IiDyg~GNi~Sv~~al~~~g~~~~~i~--~~~~~i~--~~d~lIl---PGVGsF~~~m~~Lk~~~~~~~~i~~~~~   75 (207)
T PRK13177          3 STIALIDYGAGNLRSVHNALKAAGAEGVVVT--ADPDEVR--RADRVVL---PGVGAFAACMGGLRAIPGMVEAMEERVL   75 (207)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEE--CCHHHHH--CCCEEEE---CCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9899991893279999999998299828995--8999983--5997998---9978789999776410444899999999


Q ss_pred             CCCCCEEEEECHHHHHHHH------------CCCCCCCC-------CCCCCCCCCCCEE-------CCCCEEEEECCCCC
Q ss_conf             5786347861005887875------------28544667-------7675210112347-------78970999614576
Q gi|254780420|r  275 DSGMPMFGICLGHQLLGLA------------LGAQTVKM-------YQGHHGVNHPVKN-------ISNGTVEIVSMNHG  328 (396)
Q Consensus       275 ~~~iPilGIClGhQ~l~~a------------~G~~~~kl-------~~GhrG~N~Pv~~-------~~t~kv~iTsqNHg  328 (396)
                      +.+.||||||||+|+|+..            +.|++.|+       +..|-|.|. |..       +..+..|+.   |+
T Consensus        76 ~~~~piLGICLGmQlLf~~s~E~g~~~GLgli~G~V~~l~~~~~~~kiPh~GWn~-v~~~~~~~~~~~~~~~YFv---HS  151 (207)
T PRK13177         76 EGGAPFLGICVGMQLLADRGEEHGVTPGLGWIGGEVRLIEPADPSCKVPHMGWND-VAPTTGSHPLIRPGEAYFL---HS  151 (207)
T ss_pred             HCCCCEEEECHHHHHHHHCCCCCCCCCCCCEECCEEEEECCCCCCCCCCEEEEHE-EEECCCCCCCCCCCCEEEE---EE
T ss_conf             7699569981878857657607887775455453689816888777587644010-2544667766777845789---88


Q ss_pred             EEEEHHHCCCCCEEEEEECCCCEE-EEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             157034369982899998899808-72686799778983487887767001689999999
Q gi|254780420|r  329 FAIDASSLPAGLEETHISLFDSSN-CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       329 ~~v~~~slp~~~~v~~~~~nD~ti-egi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      |++.+..  . -.+.+..-.+..+ ..+.  ...+||||||||-|.  ..+..|+++|++
T Consensus       152 Y~~~~~~--~-~~i~~~t~y~~~~~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lLknFl~  204 (207)
T PRK13177        152 YHFVPDD--G-AHVLATTDHGGGITAAVA--RDNIVGVQFHPEKSQ--AYGLALLARFLD  204 (207)
T ss_pred             EEEECCC--C-CCEEEEECCCCEEEEEEE--ECCEEEEECCCCCCC--HHHHHHHHHHHC
T ss_conf             8985389--7-416899737998999999--599999939920067--868999999877


No 50 
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.73  E-value=3.2e-17  Score=141.94  Aligned_cols=165  Identities=22%  Similarity=0.353  Sum_probs=108.9

Q ss_pred             CCCCCEEEEEEC---CCCCHHHHHHHHHCCCCEEEECCC--CHHHHHHCCCCEEEECCCCCCCCCCCCC---CHHHHHHH
Q ss_conf             777714999967---964102322222024541330465--7446441357889985888884101121---10122210
Q gi|254780420|r  202 SDAKYHVVCIDY---GIRSNLLRVLSSLGCRITIVGAET--SYKDIMSLQPDGVLLSNGPGDPAVTSVY---SSPIICKL  273 (396)
Q Consensus       202 ~~~~~kIvvIDf---GiK~nIlr~L~~~g~~v~Vvp~~~--~~~~i~~~~pdgi~lSnGPGdP~~~~~~---~~~~~~~~  273 (396)
                      ...+++|++|=-   --=-.|-+.|.++|+++.++....  .+-+-+ .++||+++-+||=+..+....   ....++..
T Consensus         8 ~~~~k~vLviqH~~~e~pG~i~~~L~~~G~~~~i~r~~~gd~lP~~l-~~~dglvVlGGpmsa~D~~p~l~~e~~~I~~~   86 (243)
T PRK06490          8 ARDKRPILIVLHQERSTPGRVGQLLRERGYPLDIRRPRLGDPLPETL-EDHAGAVIFGGPMSANDPDDFIRREIDWISVP   86 (243)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             37898579996689999729999999789858999678999899975-46058999289999899871799999999999


Q ss_pred             CCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCC--CCCCCCEECCCCEEE-----EECCCCCEEEEHHHCCCCCEEEEEE
Q ss_conf             257863478610058878752854466776752--101123477897099-----9614576157034369982899998
Q gi|254780420|r  274 VDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH--GVNHPVKNISNGTVE-----IVSMNHGFAIDASSLPAGLEETHIS  346 (396)
Q Consensus       274 ~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Ghr--G~N~Pv~~~~t~kv~-----iTsqNHg~~v~~~slp~~~~v~~~~  346 (396)
                      ++.++|+||||||||+||.|+||++.+.+.|..  |. +||.-...++..     ..-|=|+-.+   +||++.++.+.+
T Consensus        87 l~~~~P~LGICLGaQLlA~alGg~V~~~~~g~~EiG~-~~i~~t~~g~~~~~~p~~v~~wH~e~f---~LP~gA~lLA~s  162 (243)
T PRK06490         87 LKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGY-YPLRPTEAGRALMPWPEMVYHWHREGF---DLPKGAELLATG  162 (243)
T ss_pred             HHCCCCEEEECHHHHHHHHHHCCEEECCCCCCCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCC---CCCCCCEEEECC
T ss_conf             9869988998884999999839888448888775785-235677453234589783678624320---069995898789


Q ss_pred             CCCCEEEEEEECCCCEEEECCCCCCCC
Q ss_conf             899808726867997789834878877
Q gi|254780420|r  347 LFDSSNCGFRLIDQPVFSVQYHPESSP  373 (396)
Q Consensus       347 ~nD~tiegi~~~~~~~~~vQfHPEa~P  373 (396)
                      . +-.+++++. ...+||+|||||.++
T Consensus       163 ~-~c~~QAFr~-G~~a~g~QFHpEvt~  187 (243)
T PRK06490        163 D-DFPNQAFRY-GDNAWGLQFHPEVTR  187 (243)
T ss_pred             C-CCCHHHEEE-CCCEEEEECCEECCH
T ss_conf             9-983682897-694899954847878


No 51 
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.73  E-value=6.8e-17  Score=139.62  Aligned_cols=167  Identities=23%  Similarity=0.338  Sum_probs=98.3

Q ss_pred             CEEEEEECCCCC--HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC------CCCC-CCHHHHHHHCCC
Q ss_conf             149999679641--0232222202454133046574464413578899858888841------0112-110122210257
Q gi|254780420|r  206 YHVVCIDYGIRS--NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA------VTSV-YSSPIICKLVDS  276 (396)
Q Consensus       206 ~kIvvIDfGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~------~~~~-~~~~~~~~~~~~  276 (396)
                      .+|++||+|+=+  ++.+.|...++...++- ..+.+++.  +.|.|+|   ||--+      .... .....+.+.++.
T Consensus         2 ~kI~IiDyg~gNi~Sv~~al~~~~~~~~i~i-~~~~~~i~--~~d~lIl---PGVGsf~~~m~~L~~~~~~~~i~~~~~~   75 (208)
T PRK13146          2 MSVAIIDYGSGNLRSAARALERAAPGADVTV-TADPDAVR--AADRLVL---PGVGAFADCMRGLRAVGGLREAVEEAAA   75 (208)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCEEEE-ECCHHHHH--HCCEEEE---CCCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             8899993795589999999998579973999-69999984--2887898---3889779999987640768999999983


Q ss_pred             CCCEEEEECHHHHHHHH------------CCCCCCCCC-------CCCCCCCC-------CC-EECC-CCEEEEECCCCC
Q ss_conf             86347861005887875------------285446677-------67521011-------23-4778-970999614576
Q gi|254780420|r  277 GMPMFGICLGHQLLGLA------------LGAQTVKMY-------QGHHGVNH-------PV-KNIS-NGTVEIVSMNHG  328 (396)
Q Consensus       277 ~iPilGIClGhQ~l~~a------------~G~~~~kl~-------~GhrG~N~-------Pv-~~~~-t~kv~iTsqNHg  328 (396)
                      ++||||||||||+|+..            +.|++.|+.       ..|-|.|.       |. ..+. ..+.|..   |+
T Consensus        76 ~kpiLGICLGmQlL~~~s~E~g~~~GLgli~G~V~kl~~~~~~~kiPhiGWn~i~~~~~~~l~~~i~~~~~fYFv---HS  152 (208)
T PRK13146         76 GRPFLGICVGMQLLFERGEEHGDTPGLGWIPGDVVRLQPDGPALKVPHMGWNTVDQPRDHPLFDGIPDGARFYFV---HS  152 (208)
T ss_pred             CCCEEEEEEEEEEEECCCEECCCCCCCEEECCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEE---EE
T ss_conf             998798885464121124006865701187418999987886665744252778856898200478878879997---31


Q ss_pred             EEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             15703436998289999889980872686799778983487887767001689999999
Q gi|254780420|r  329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       329 ~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      |.+.+..  +...+...+ .+..+.++. ...++||+|||||-|.  ..+..|+++|+.
T Consensus       153 Y~~~~~~--~~~~~a~t~-yg~~~~a~v-~~~ni~G~QFHPEKS~--~~Gl~llknFl~  205 (208)
T PRK13146        153 YAAAPAN--PADVLAWTD-YGGPFTAAV-ARGNLFATQFHPEKSG--DAGLRLLRNFLA  205 (208)
T ss_pred             EEEECCC--CHHEEEEEE-CCCEEEEEE-ECCCEEEEECCCCCCC--HHHHHHHHHHHC
T ss_conf             3753188--210089963-898799999-8399999989930056--838999999863


No 52 
>PRK13153 consensus
Probab=99.72  E-value=5.2e-17  Score=140.47  Aligned_cols=164  Identities=23%  Similarity=0.400  Sum_probs=102.3

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCC-CCC----CCHHHHHHHCCCCCCE
Q ss_conf             999967964--102322222024541330465744644135788998588888410-112----1101222102578634
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAV-TSV----YSSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~-~~~----~~~~~~~~~~~~~iPi  280 (396)
                      |++||+|+=  .++.+.|.+.|+++.++   .+.+++.+  .|.|+| ||-|.-.. ...    ...+.+++..+.+.||
T Consensus         2 I~IiDyg~gNi~Sv~~al~~lg~~~~ii---~~~~~i~~--~d~lIl-PGVGsf~~~m~~L~~~~l~~~i~~~~~~g~pi   75 (203)
T PRK13153          2 IGIIDYNAGNLASVINAFEKIGAKARLE---SDPSKLKE--YDKLIL-PGVGAFGDAMEHLKSNGMDEAIKEFAKSGKPF   75 (203)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHHH--CCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             9999669328999999999869988997---69999965--893898-78883488999777537578899998759968


Q ss_pred             EEEECHHHHHHHH---CC---------CCCCCCC---------CCCCCCCC-------CC-EECCCC-EEEEECCCCCEE
Q ss_conf             7861005887875---28---------5446677---------67521011-------23-477897-099961457615
Q gi|254780420|r  281 FGICLGHQLLGLA---LG---------AQTVKMY---------QGHHGVNH-------PV-KNISNG-TVEIVSMNHGFA  330 (396)
Q Consensus       281 lGIClGhQ~l~~a---~G---------~~~~kl~---------~GhrG~N~-------Pv-~~~~t~-kv~iTsqNHg~~  330 (396)
                      ||||||+|+|+..   .|         |++.|+.         ..|-|.|.       |. +.+..+ ..|++   |+|.
T Consensus        76 LGIClGmQlL~~~s~E~g~~~GLgli~G~V~~l~~~~~~~~~kiPhiGWn~i~~~~~~~~~~~~~~~~~~YF~---HSy~  152 (203)
T PRK13153         76 LGICLGMQLLFEKSYEFGEHEGLGLIEGEVVKFDESKFDEPLKVPHMGWNRLEFKKETPLFRGLPESFYLYFV---HSYH  152 (203)
T ss_pred             EEEEHHHHHCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHEECCCCCHHHCCCCCCCEEEEE---EEEE
T ss_conf             9985553420047590675688848877899867222355667873435541034568666077768739999---1034


Q ss_pred             EEHHHCCCCCEEEEEECCCC-EEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             70343699828999988998-08726867997789834878877670016899999999
Q gi|254780420|r  331 IDASSLPAGLEETHISLFDS-SNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       331 v~~~slp~~~~v~~~~~nD~-tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      +..    .+-.+.+.+..+. -+.+++  ..+++|+|||||-|-  ..+..|+++|++|
T Consensus       153 ~~~----~~~~~~~~~~~g~~~~aai~--~~Ni~G~QFHPEKS~--~~Gl~llknFl~l  203 (203)
T PRK13153        153 AVC----DDKDVLGKTTYGYEFVSAVQ--HDNVFGFQPHPEKSH--DNGLKILKNFVEL  203 (203)
T ss_pred             CCC----CCCCEEEEECCCCEEEEEEE--ECCEEEEECCCCCCC--HHHHHHHHHHHCC
T ss_conf             256----87689999559986899998--299999928944077--8599999999619


No 53 
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.72  E-value=4.1e-17  Score=141.18  Aligned_cols=165  Identities=26%  Similarity=0.416  Sum_probs=103.8

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC--HHHHHHHCCCCCCEEE
Q ss_conf             4999967964--10232222202454133046574464413578899858888841011211--0122210257863478
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLVDSGMPMFG  282 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~--~~~~~~~~~~~iPilG  282 (396)
                      +|++||+|+=  .|+.+.|...|+++.+.   .+.+++.  +.|.|+| ||-|.-..+-...  ..+...+.+.+.|+||
T Consensus         2 kI~IiDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIL-PGVGsF~~am~~L~~~~l~~~i~~~~kpiLG   75 (196)
T PRK13170          2 NVVIIDTGCANLSSVKFAFERLGYNPVVS---RDPDVIL--AADKLFL-PGVGTAQAAMDQLRERELIELIKACTQPVLG   75 (196)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             89999279558999999999879979996---7989984--3897997-1899889999999873568999970897488


Q ss_pred             EECHHHHHHHHC---------C---CCCCCC-----CCCCCCCCC-------CC-EECCCC-EEEEECCCCCEEEEHHHC
Q ss_conf             610058878752---------8---544667-----767521011-------23-477897-099961457615703436
Q gi|254780420|r  283 ICLGHQLLGLAL---------G---AQTVKM-----YQGHHGVNH-------PV-KNISNG-TVEIVSMNHGFAIDASSL  336 (396)
Q Consensus       283 IClGhQ~l~~a~---------G---~~~~kl-----~~GhrG~N~-------Pv-~~~~t~-kv~iTsqNHg~~v~~~sl  336 (396)
                      ||||||+|+...         |   |++.|+     +..|-|.|.       |. .++..+ ..|..   |+|.+..   
T Consensus        76 ICLGMQlL~~~S~E~g~~~GLgli~G~V~kl~~~~~~vPhiGWn~i~~~~~~~l~~~i~~~~~fYFv---HSY~~~~---  149 (196)
T PRK13170         76 ICLGMQLLGRRSEESGGVDCLGIIDGDVPKLTDFGLPLPHMGWNQVTPQAGHPLFQGIEDGSYFYFV---HSYAMPV---  149 (196)
T ss_pred             EEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHCCCCCCCEEEEE---EEEEECC---
T ss_conf             8800313463553689866000542299997767887744214888735898766498858879998---7787068---


Q ss_pred             CCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9982899998899808726867997789834878877670016899999999
Q gi|254780420|r  337 PAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       337 p~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                       .+..+...+-...-+..+  +..++||+|||||-|.  ..+..|.++|+++
T Consensus       150 -~~~~ia~t~yg~~f~s~v--~~~Ni~G~QFHPEKS~--~~Gl~lLknFl~l  196 (196)
T PRK13170        150 -NPYTIAQCNYGEPFSAAI--QKDNFYGVQFHPERSG--AAGAQLLKNFLEM  196 (196)
T ss_pred             -CCCEEEEEECCCEEEEEE--EECCEEEEECCCCCCC--HHHHHHHHHHHCC
T ss_conf             -888899997899899999--7199999968920067--8489999999619


No 54 
>PRK05665 amidotransferase; Provisional
Probab=99.72  E-value=1.7e-16  Score=136.86  Aligned_cols=122  Identities=27%  Similarity=0.433  Sum_probs=83.1

Q ss_pred             CCCEEEECCCCCCCCCCCCC---CHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-CCCCCCCEECCCCE--
Q ss_conf             57889985888884101121---1012221025786347861005887875285446677675-21011234778970--
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVY---SSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-HGVNHPVKNISNGT--  319 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~---~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-rG~N~Pv~~~~t~k--  319 (396)
                      .+||++|+++|-+-.+...-   ..+.++.+.+.++||||||+|||+||.|+||++.|.+.|- -|. +++.....+.  
T Consensus        57 ~~dg~vITGS~~~vyd~~pWi~~L~~~i~~~~~~~~pilGICfGHQliA~ALGG~V~~~~~Gw~vG~-~~~~~~~~~~~~  135 (240)
T PRK05665         57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGI-HRYQLAAHAPWM  135 (240)
T ss_pred             HCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEEEECCCCCEEEE-EEEEECCCCCCC
T ss_conf             8789999589874689967699999999999876999899944368888860983612799736667-998875877433


Q ss_pred             -----EEEECCCCCEEEEHHHCCCCCEEEEEECCCCE-EEEEEECCCCEEEECCCCCCCC
Q ss_conf             -----99961457615703436998289999889980-8726867997789834878877
Q gi|254780420|r  320 -----VEIVSMNHGFAIDASSLPAGLEETHISLFDSS-NCGFRLIDQPVFSVQYHPESSP  373 (396)
Q Consensus       320 -----v~iTsqNHg~~v~~~slp~~~~v~~~~~nD~t-iegi~~~~~~~~~vQfHPEa~P  373 (396)
                           -.-.-+.|...|.  .||++.++++.|  |.+ +++++.. ..++++|||||=++
T Consensus       136 ~~~~~~~~l~~~H~D~V~--~lP~ga~~Lass--~~cp~q~~~~~-~~~~~~Q~HPEf~~  190 (240)
T PRK05665        136 SPAVTELTLLISHQDQVT--ALPEGATVIASS--DFCPNAAYHIR-DQVLCFQGHPEFVH  190 (240)
T ss_pred             CCCCCCCEEEEEECCEEE--ECCCCEEEEEEC--CCCCHHHEECC-CCEEEEECCCCCCH
T ss_conf             587564079977224278--579984899867--99833342627-86899916968799


No 55 
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.71  E-value=3.9e-17  Score=141.32  Aligned_cols=150  Identities=21%  Similarity=0.216  Sum_probs=101.0

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHH--HHCCCCEEEECCCCCCCCCCCC--------CCHHHHHHHCCCCCCEEEEECHH
Q ss_conf             0232222202454133046574464--4135788998588888410112--------11012221025786347861005
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDI--MSLQPDGVLLSNGPGDPAVTSV--------YSSPIICKLVDSGMPMFGICLGH  287 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i--~~~~pdgi~lSnGPGdP~~~~~--------~~~~~~~~~~~~~iPilGIClGh  287 (396)
                      .|-..|.++|+++.++..... +.+  ...++|++++-+||-.|.....        .....+++.++.++|+|||||||
T Consensus        16 ~i~~~l~~~G~~~~~~~~~~g-~~lP~~~~~~d~liVlGGpms~~~~~e~~p~l~l~~E~~lir~a~~~~~PvlGIClG~   94 (235)
T PRK08250         16 AYLKWAEDRGYTISWSRVYAG-EALPENADGFDMLIVLGGPQSPRTTREECPYFDSKAEQHLINQAITARKAVVGVCLGS   94 (235)
T ss_pred             HHHHHHHHCCCEEEEEECCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf             789999978996999966899-9899981025889997899877773212787470999999999998699889981677


Q ss_pred             HHHHHHCCCCCCCCCCCCCCC----------CCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             887875285446677675210----------1123477897099961457615703436998289999889980872686
Q gi|254780420|r  288 QLLGLALGAQTVKMYQGHHGV----------NHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRL  357 (396)
Q Consensus       288 Q~l~~a~G~~~~kl~~GhrG~----------N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~  357 (396)
                      |+||.|+||++.|.+.+.-|.          .+|........ ....|-|+..   -+||++-.+.+.|.. -.+++++.
T Consensus        95 QliA~AlGg~V~~~~~~EiG~~~i~~t~~~~~d~~~~~~~~~-~~v~~wH~d~---~~LP~gA~lLAss~~-c~~Qaf~~  169 (235)
T PRK08250         95 QLIGEALGAKYCQSPEKEIGHFPITLTEAGLRDPLLKHFGST-LTVGHWHNDM---PGLTDQATVLATSEG-CPRQIVQY  169 (235)
T ss_pred             HHHHHHCCCEEECCCCCEEEEEEEEEECCCCCCHHHHCCCCC-CEEEEEEEEE---EECCCCCEEEECCCC-CHHHHEEE
T ss_conf             999998098775489982448971630144458466528987-6578985236---206999679973999-84895882


Q ss_pred             CCCCEEEECCCCCCCCC
Q ss_conf             79977898348788776
Q gi|254780420|r  358 IDQPVFSVQYHPESSPG  374 (396)
Q Consensus       358 ~~~~~~~vQfHPEa~PG  374 (396)
                      .+. +||+|||||..|-
T Consensus       170 g~~-~~g~QfHpE~t~~  185 (235)
T PRK08250        170 GNL-VYGFQCHMEFTVE  185 (235)
T ss_pred             CCC-EEEEECCEECCHH
T ss_conf             695-8999710378999


No 56 
>PRK13172 consensus
Probab=99.71  E-value=2.5e-16  Score=135.70  Aligned_cols=166  Identities=28%  Similarity=0.472  Sum_probs=103.6

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC--CC-C----CCCHHHHHHHCCC
Q ss_conf             14999967964--10232222202454133046574464413578899858888841--01-1----2110122210257
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA--VT-S----VYSSPIICKLVDS  276 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~--~~-~----~~~~~~~~~~~~~  276 (396)
                      .+|++||+|+=  .++.+.|...|+++.++   .+++++.  +.|.|+|   ||-=+  .+ .    ....+.++...+.
T Consensus         2 ~~I~IIDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIl---PGVGsF~~~m~~L~~~~l~~~i~~~~~~   73 (213)
T PRK13172          2 SSVSIVDYGVGNLLSVARAFQYFDASVNLV---STPEEIM--SADRLVL---PGVGAFEDGMKGLTTLNFIEPIKQFARS   73 (213)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE---CCCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             879999789429999999999869988997---7999983--3897897---6878469999988723863789998765


Q ss_pred             CCCEEEEECHHHHHHHHC-------C-----CCCCCC----------CCCCCCCCCCCEE-------------CC-CCEE
Q ss_conf             863478610058878752-------8-----544667----------7675210112347-------------78-9709
Q gi|254780420|r  277 GMPMFGICLGHQLLGLAL-------G-----AQTVKM----------YQGHHGVNHPVKN-------------IS-NGTV  320 (396)
Q Consensus       277 ~iPilGIClGhQ~l~~a~-------G-----~~~~kl----------~~GhrG~N~Pv~~-------------~~-t~kv  320 (396)
                      ++|+||||||+|+|....       |     |++.|+          +..|-|.|.-+..             +. ..+.
T Consensus        74 ~kpiLGICLGmQlLf~~s~E~g~~~GLgli~G~v~kl~~~~~~~~~~kvPh~GWn~i~~~~~~~~~~~~l~~~~~~~~~f  153 (213)
T PRK13172         74 GKPFLGICLGMQMMLSKSTEFGQHEGLGLIAGEVVSVPSHGVDGQLHKIPHIGWNELVSTSEGEDWCHTILKNIPLNSSV  153 (213)
T ss_pred             CCCEEEEEHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCEECHHHEECCCCCCCCCCHHHCCCCCCCEE
T ss_conf             99579985766626538646876476657552598777556666456276201445332455433343666189778617


Q ss_pred             EEECCCCCEEEEHHHCCCCCEEEEEECCCCE-EEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9961457615703436998289999889980-8726867997789834878877670016899999999
Q gi|254780420|r  321 EIVSMNHGFAIDASSLPAGLEETHISLFDSS-NCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       321 ~iTsqNHg~~v~~~slp~~~~v~~~~~nD~t-iegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      |..   |+|.+.+.. |..  +.+....++. +-++ .+..+++|+|||||=|.  ..+..|+++|+++
T Consensus       154 YFv---HSY~~~~~~-~~~--~~a~~~y~g~~~~a~-i~~~Ni~G~QFHPEKS~--~~Gl~lL~nFl~l  213 (213)
T PRK13172        154 YFV---HSFMAMPSN-PKK--RLADTLYDGQAISAV-IKDENMYGCQFHPEKSG--EVGLSIIQQFLQI  213 (213)
T ss_pred             EEE---EEEEEECCC-CCC--EEEEEEECCEEEEEE-EECCCEEEEECCHHHCC--HHHHHHHHHHHCC
T ss_conf             999---877885388-873--899999899999999-98899999808802236--8699999999729


No 57 
>PRK13176 consensus
Probab=99.71  E-value=1.2e-16  Score=137.79  Aligned_cols=167  Identities=21%  Similarity=0.318  Sum_probs=96.9

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEE-E--CCCCHHHHHHCCCCEEEECCCCCCCCCCC---C-----CCHH-HHHH
Q ss_conf             4999967964--10232222202454133-0--46574464413578899858888841011---2-----1101-2221
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIV-G--AETSYKDIMSLQPDGVLLSNGPGDPAVTS---V-----YSSP-IICK  272 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vv-p--~~~~~~~i~~~~pdgi~lSnGPGdP~~~~---~-----~~~~-~~~~  272 (396)
                      ||++||+|+=  .|+.+.|.++|.++.+- .  ...+.+++.  ++|.|+|   ||-.+-..   .     ...+ ++..
T Consensus         2 kI~IIDyg~GNi~Sv~~al~~~g~~~~i~~~i~~~~~~~~~~--~~~~lIL---PGVGsf~~~m~~L~~~~g~~~~i~~~   76 (216)
T PRK13176          2 RVAIIDYGSGNLHSATKAFERAAREAGIAAEIDVTSDPDRVA--RADRIVL---PGVGAFADCRRGLDAVDGMVEALTEA   76 (216)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH--CCCEEEE---CCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             899990698379999999999876438896099978999983--7997998---99877899999877627728999999


Q ss_pred             HCCCCCCEEEEECHHHHHHHH------------CCCCCCCC-------CCCCCCCCCC-------C-EEC----CCCEEE
Q ss_conf             025786347861005887875------------28544667-------7675210112-------3-477----897099
Q gi|254780420|r  273 LVDSGMPMFGICLGHQLLGLA------------LGAQTVKM-------YQGHHGVNHP-------V-KNI----SNGTVE  321 (396)
Q Consensus       273 ~~~~~iPilGIClGhQ~l~~a------------~G~~~~kl-------~~GhrG~N~P-------v-~~~----~t~kv~  321 (396)
                      +...++||||||||+|+|+..            +.|++.|+       +..|-|.|.=       . .++    .....|
T Consensus        77 ~~~~~~piLGIClGmQlL~~~s~E~~~~~GLgli~G~V~kl~~~~~~~kvPh~GWn~v~~~~~~~~~~~i~~~~~~~~fY  156 (216)
T PRK13176         77 VEKKARPFLGICVGMQLMATRGLEKTVTDGLGWIAGDVVEITPSDPSLKIPHMGWNTLDVKRPHPVFDGIPTGDKGLHAY  156 (216)
T ss_pred             HHHCCCCEEEEEHHHEEHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEECHHHEEECCCCHHHCCCCCCCCCCEEE
T ss_conf             99769957998531212653686788867330672499994788867648641677868678867773877788873589


Q ss_pred             EECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             961457615703436998289999889980872686799778983487887767001689999999
Q gi|254780420|r  322 IVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       322 iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      .+   |+|.+....  +...+.+.+-...-+..+.  ..++||+|||||-|.-  -+..|+++|++
T Consensus       157 Fv---HSY~~~~~~--~~~~~a~t~yg~~f~a~v~--k~Ni~G~QFHPEKS~~--~Gl~ll~nFl~  213 (216)
T PRK13176        157 FV---HSYHLAAAN--EADVLAHADYGGPVTAIVG--RDTMVGTQFHPEKSQR--LGLALIANFLK  213 (216)
T ss_pred             EE---EEEEEECCC--CCCEEEEEECCCEEEEEEE--ECCEEEECCCCCCCCH--HHHHHHHHHHC
T ss_conf             99---756760488--4779999975998999998--3999999099310278--49999999856


No 58 
>PRK13171 consensus
Probab=99.71  E-value=1.9e-16  Score=136.40  Aligned_cols=167  Identities=25%  Similarity=0.336  Sum_probs=103.8

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCC-CCCCCC-CCHHHHHHHCCCCCCEE
Q ss_conf             14999967964--102322222024541330465744644135788998588888-410112-11012221025786347
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGD-PAVTSV-YSSPIICKLVDSGMPMF  281 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGd-P~~~~~-~~~~~~~~~~~~~iPil  281 (396)
                      .+|++||+|+=  .++.+.|.+.|+++.++.   +.+++.  +.|+|+|. |=|. +..... .....+..+.+.++|||
T Consensus         2 ~~I~IiDyg~gNi~Sv~~al~~lg~~~~ii~---~~~~i~--~~~~lIlP-GVGsf~~~m~~L~~~~~~~~i~~~~~piL   75 (200)
T PRK13171          2 TDVALIDAGGANLGSVRYALERLGVEARVVR---DAAGLQ--GAQRVILP-GVGAAPEAMARLRAQGLIEPLRELQVPLI   75 (200)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--CCCEEEEC-CCCCHHHHHHHHHHCCCHHHHHHCCCCEE
T ss_conf             8799996895179999999998499879978---999995--29989989-98878999999987212678986499735


Q ss_pred             EEECHHHHHHHH-----------CCCCCCCCC------CCCCCCCCCC--------EECCC-CEEEEECCCCCEEEEHHH
Q ss_conf             861005887875-----------285446677------6752101123--------47789-709996145761570343
Q gi|254780420|r  282 GICLGHQLLGLA-----------LGAQTVKMY------QGHHGVNHPV--------KNISN-GTVEIVSMNHGFAIDASS  335 (396)
Q Consensus       282 GIClGhQ~l~~a-----------~G~~~~kl~------~GhrG~N~Pv--------~~~~t-~kv~iTsqNHg~~v~~~s  335 (396)
                      |||||+|+|+..           +-+++.|+.      ..|-|.|.=.        .++.+ ...|..   |+|++..+ 
T Consensus        76 GIClGmQlLf~~SeEg~~~GLgli~G~V~kl~~~~~~~vPh~GWn~i~~~~~~~~~~~~~~~~~fYFv---HSY~~~~~-  151 (200)
T PRK13171         76 GICLGMQLLFEHSEEGDVECLGLLPGIVRHMTPALGIRVPHMGWNRLVPMRDSALLAGLPERASAYFV---HGYAAPVT-  151 (200)
T ss_pred             EEEHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCCCCHHHCCCCCCCCEEEE---CCCCCCCC-
T ss_conf             56076575403543799766167701899867776786836424345336788767299879819998---29611788-


Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             699828999988998087268679977898348788776700168999999999
Q gi|254780420|r  336 LPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       336 lp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                        .+ .+...+-...-+..  .++.+++|+|||||-|.  ..+..|+++|++|-
T Consensus       152 --~~-~i~~~~~~~~f~a~--v~~~ni~G~QFHPEKS~--~~Gl~ll~nF~~l~  198 (200)
T PRK13171        152 --AD-TVAACDHGGLFTAI--VQNGLRCGAQFHPERSA--DTGARILRNFLEMS  198 (200)
T ss_pred             --CC-EEEEECCCCEEEEE--EECCCEEEECCCCCCCC--HHHHHHHHHHHHHH
T ss_conf             --87-89994279849999--98199899808943266--75799999998540


No 59 
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.70  E-value=3.3e-16  Score=134.79  Aligned_cols=263  Identities=18%  Similarity=0.310  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCC--------------------
Q ss_conf             689999998539842366327654589789888774158874321011013333211168--------------------
Q gi|254780420|r  128 TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSE--------------------  187 (396)
Q Consensus       128 TRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~--------------------  187 (396)
                      |-.=+|.||+-|-+.-+|..-.+..++ ++.++++..|........+....++..|...-                    
T Consensus       190 TQhSVkeLr~~GIqPDilvcRse~~l~-~~~k~KIalfcnV~~~~VI~~~Dv~sIYeVPl~l~~qgl~~~I~~~L~L~~~  268 (534)
T PRK05380        190 TQHSVKELRSIGIQPDILVCRSERPLP-EEEKRKIALFCNVPEEAVISAPDVDSIYEVPLLLHEQGLDDIVLKRLGLEAP  268 (534)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf             188899999658998747862577689-8999988641588789968626852377768999985838999998678989


Q ss_pred             --CCCCCCCCCCCCCCCCCCCEEEEEEC--C---CCCHHHHHHHH----HCCCCEEEECCC------CHHHHHHCCCCEE
Q ss_conf             --65344543443467777714999967--9---64102322222----024541330465------7446441357889
Q gi|254780420|r  188 --KIWKWGEETSFLKSSDAKYHVVCIDY--G---IRSNLLRVLSS----LGCRITIVGAET------SYKDIMSLQPDGV  250 (396)
Q Consensus       188 --~~~~~~~~~~~~~~~~~~~kIvvIDf--G---iK~nIlr~L~~----~g~~v~Vvp~~~------~~~~i~~~~pdgi  250 (396)
                        ....|..-.....++....+|+++-=  .   .=.||+..|.-    .+++|.+.--++      +..+.++ +.|||
T Consensus       269 ~~~l~~W~~~v~~~~~~~~~V~IaiVGKYv~L~DaY~Sv~EAL~Hag~~~~~kv~i~wIdse~le~~~~~~~L~-~~dGI  347 (534)
T PRK05380        269 EPDLSEWEDLVERIKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLK-DVDGI  347 (534)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCHHHHHH-CCCEE
T ss_conf             97899999999987587655699986313678604999999999888863874227998857636646777763-18829


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-----CCCCCCCEECCCCE------
Q ss_conf             9858888841011211012221025786347861005887875285446677675-----21011234778970------
Q gi|254780420|r  251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-----HGVNHPVKNISNGT------  319 (396)
Q Consensus       251 ~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-----rG~N~Pv~~~~t~k------  319 (396)
                      ++-+|=|+=..-  .-+..++.+-+.+||-||||||+|+....|--.+..++-.|     ....|||.++....      
T Consensus       348 lVPGGFG~RGiE--GKI~Ai~yARen~IPfLGICLGMQ~avIEfARNVlgl~dAnStEfd~~t~~pVI~lm~eq~~~~~~  425 (534)
T PRK05380        348 LVPGGFGERGIE--GKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDL  425 (534)
T ss_pred             EECCCCCCCCHH--HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECHHHCCCCCC
T ss_conf             957876654315--689999999981998110112237889999998458999732535899999869988231377656


Q ss_pred             ----------EEEE-----------------CCCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEECCCCEE-EECC
Q ss_conf             ----------9996-----------------145761570343---6-998289999889980872686799778-9834
Q gi|254780420|r  320 ----------VEIV-----------------SMNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRLIDQPVF-SVQY  367 (396)
Q Consensus       320 ----------v~iT-----------------sqNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~~~~~~~-~vQf  367 (396)
                                |.+.                 -+-|-|.|.++=   | ..++.++..|...+.+|-++.++.|+| ||||
T Consensus       426 GGTMRLG~y~~~l~~gS~a~~~Yg~~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sG~s~d~~lvEiiEl~~HpfFvg~Qf  505 (534)
T PRK05380        426 GGTMRLGAYPCKLKPGTLAAEIYGKTEVIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIIELPDHPWFVGVQF  505 (534)
T ss_pred             CCEEECCCEEEEECCCCHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf             66045164456756888999985899816664564200189999999978979999989998789998689980899657


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             878877670016899999999997357
Q gi|254780420|r  368 HPESSPGPQDSYYLFSTFIDFMHKRKT  394 (396)
Q Consensus       368 HPEa~PGP~D~~~~F~~F~~~i~~~k~  394 (396)
                      |||=..-|.+.+-+|..|++...++|.
T Consensus       506 HPEfkSrP~~PhPlF~~fI~Aal~~~~  532 (534)
T PRK05380        506 HPEFKSRPRRPHPLFAGFVKAALEYKK  532 (534)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             766578999998369999999998752


No 60 
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.70  E-value=1.5e-16  Score=137.17  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=82.7

Q ss_pred             CCCCEEEECCCCCCCCCCCC-----------CCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCC-C-----
Q ss_conf             35788998588888410112-----------110122210257863478610058878752854466776752-1-----
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTSV-----------YSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH-G-----  307 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~~-----------~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Ghr-G-----  307 (396)
                      .++||||+++||.+-.+...           ....+++++.+.++|+||||||||+||.|+||++.+. +|.- |     
T Consensus        50 ~~ydgvivgGsp~~vsd~~~~~~~~q~~~e~~l~~Ll~~~~~~~~P~LGiC~G~Qlla~alGG~V~~~-~~~e~G~~~i~  128 (242)
T PRK07567         50 DDFSGVIVGGSPFNVSDPAYSKSPTQRRVEAELSGLLDEVVARDFPFLGCCYGVGTLGHHLGGVVDRT-HGEPVGATTVT  128 (242)
T ss_pred             HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCEEECC-CCCEEEEEEEE
T ss_conf             00078999488975678544564688899999999999998469988998563899999729888279-98707799999


Q ss_pred             -----CCCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCC
Q ss_conf             -----011234778970999614576157034369982899998899808726867997789834878877
Q gi|254780420|r  308 -----VNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP  373 (396)
Q Consensus       308 -----~N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~P  373 (396)
                           ..+|+..-.-.+ +-.-+-|+..|.  .||.+..+.+.|.. --+++++..+ ++|++|||||-.+
T Consensus       129 lt~~g~~Dpl~~~lp~~-f~a~~~H~d~V~--~LP~ga~lLA~s~~-cpvqafr~g~-~~y~~QFHPE~d~  194 (242)
T PRK07567        129 LTDAGRRDPLTADLPDT-FTAFTGHKEAVV--ALPPGAVLLATGPT-CPVQMFRAGE-NVYATQFHPELDA  194 (242)
T ss_pred             ECCCCCCCCCCCCCCCC-EEEEEECCCEEE--ECCCCCEEEECCCC-CCHHEEEECC-CEEEEECCCCCCH
T ss_conf             81456779110179844-179986164137--68998489984999-8236189379-7899924840799


No 61 
>PRK13178 consensus
Probab=99.70  E-value=5.3e-16  Score=133.35  Aligned_cols=168  Identities=23%  Similarity=0.397  Sum_probs=104.4

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCC-CC----CCHHHHHHHCCCCCCE
Q ss_conf             999967964--1023222220245413304657446441357889985888884101-12----1101222102578634
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVT-SV----YSSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~-~~----~~~~~~~~~~~~~iPi  280 (396)
                      |++||+|+=  +++.+.|...|+++.|.   .+.+++.  +.|+|+| ||=|.=... ..    ...+.+.+..+.++||
T Consensus         2 I~IiDyg~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIl-PGVGsf~~~m~~L~~~~l~~~i~~~~~~gkpi   75 (213)
T PRK13178          2 LAILDYKAGNQTSVRRALNHLGIPCVIT---ADPEVIQ--GAAGIIF-PGVGAAGQAMNELRTTGLDEVLREQVQAGKPL   75 (213)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCE
T ss_conf             9999659308999999999869998997---7999994--3998998-99885699999875006289999874369957


Q ss_pred             EEEECHHHHHHHH--------CC---CCCCCC------------CCCCCCCCC-------CC-EECCC-CEEEEECCCCC
Q ss_conf             7861005887875--------28---544667------------767521011-------23-47789-70999614576
Q gi|254780420|r  281 FGICLGHQLLGLA--------LG---AQTVKM------------YQGHHGVNH-------PV-KNISN-GTVEIVSMNHG  328 (396)
Q Consensus       281 lGIClGhQ~l~~a--------~G---~~~~kl------------~~GhrG~N~-------Pv-~~~~t-~kv~iTsqNHg  328 (396)
                      ||||||+|+|...        +|   +++.|+            +..|-|.|.       |. .++.+ .+.|..   |+
T Consensus        76 LGIClGmQlLf~~seE~~~~GLgli~G~v~~l~~~~~~~~~~~~kvPhiGWn~i~~~~~~~l~~~~~~~~~fYFv---HS  152 (213)
T PRK13178         76 LGICVGCQIMLDYSQENDTKCLGIIPGECRLFNPALTDEDGAPIRVPHMGWNSVVQRRPCPLFKGIEPEAEFYFV---HS  152 (213)
T ss_pred             EEEEHHHEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEE---EE
T ss_conf             998424555541442454224675610699888543443477756772122127717998522456777879998---68


Q ss_pred             EEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             157034369982899998899808726867997789834878877670016899999999997
Q gi|254780420|r  329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       329 ~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |.++++   .+. +.+.+-.+...-+ .+...++||+|||||-|.  ..+..|+++|+..-.+
T Consensus       153 Y~~~~~---~~~-~ia~t~yg~~f~a-~v~k~Ni~G~QFHPEKSg--~~Gl~lLknF~~~~~~  208 (213)
T PRK13178        153 YFPAPP---EEY-VIATTTYGIEFCS-AHGGPGLWAVQFHPEKSG--RPGLRLLANFHRYCTE  208 (213)
T ss_pred             EEECCC---CCC-EEEEEECCCEEEE-EEEECCEEEEECCCCCCC--HHHHHHHHHHHHHHHH
T ss_conf             985389---864-8999978997999-998099999919953168--8699999999999876


No 62 
>PRK13174 consensus
Probab=99.69  E-value=7.7e-16  Score=132.21  Aligned_cols=168  Identities=24%  Similarity=0.372  Sum_probs=102.8

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCC
Q ss_conf             14999967964--102322222024541330465744644135788998588888410112-----11012221025786
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGM  278 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~i  278 (396)
                      ++|++||+|+=  .|+.+.|...|++..++.  .+.+++.  +.|.|+| ||-|.=...-.     ...++++.+ ..+.
T Consensus         2 k~I~IiDyG~gNi~Sv~~al~~~g~~~~~i~--~~~~~i~--~~d~lIl-PGVGsf~~~m~~L~~~~~~~~i~~~-~~~k   75 (212)
T PRK13174          2 QTVAVIDYGMGNLHSVAKALEHVGAGRVLVT--SDAAVIR--EADRVVF-PGVGAIRDCMAEIRRLGFDSLVREV-SQDR   75 (212)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEC--CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCHHHHHHHH-HCCC
T ss_conf             8899995881079999999997499879983--8989996--3897996-5888689999998876969999999-7499


Q ss_pred             CEEEEECHHHHHHHHC---C---------CCCCC-----------CCCCCCCCCC-------CC-EECCC-CEEEEECCC
Q ss_conf             3478610058878752---8---------54466-----------7767521011-------23-47789-709996145
Q gi|254780420|r  279 PMFGICLGHQLLGLAL---G---------AQTVK-----------MYQGHHGVNH-------PV-KNISN-GTVEIVSMN  326 (396)
Q Consensus       279 PilGIClGhQ~l~~a~---G---------~~~~k-----------l~~GhrG~N~-------Pv-~~~~t-~kv~iTsqN  326 (396)
                      ||||||||+|+|+...   |         |++.|           ++.+|-|.|.       |. .++.+ .+.|..   
T Consensus        76 piLGICLGMQlL~~~s~E~g~~~GLgli~G~V~~~~~~~~~~~~~~kiPhiGWn~i~~~~~~~l~~~~~~~~~fYFv---  152 (212)
T PRK13174         76 PFLGICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLHEDGEHLKVPHMGWNQVSQAVDHPLWHDIPDLARFYFV---  152 (212)
T ss_pred             CEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCCHHCCCCCCCEEEEE---
T ss_conf             87998088998761754789877533635079986755565554556755001247606888121067765759987---


Q ss_pred             CCEEEEHHHCCCCCEEEEE-ECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7615703436998289999-88998087268679977898348788776700168999999999
Q gi|254780420|r  327 HGFAIDASSLPAGLEETHI-SLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       327 Hg~~v~~~slp~~~~v~~~-~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      |+|.+....   ...+++. +-...-+..++  ..++||+|||||-|.  ..+..|+++|+..-
T Consensus       153 HSY~~~~~~---~~~~~a~t~~g~~f~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lLknFi~w~  209 (212)
T PRK13174        153 HSYYIEAGN---PRQVVGRGHYGVDFAAALA--DGSRFAVQFHPEKSH--THGLQLLQNFAAWD  209 (212)
T ss_pred             EEEEECCCC---HHCEEEEEECCCEEEEEEE--ECCEEEECCCCCCCC--HHHHHHHHHHHHHC
T ss_conf             566752698---2038999989988999998--499999908910057--75899999998317


No 63 
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.68  E-value=5.9e-16  Score=132.99  Aligned_cols=163  Identities=24%  Similarity=0.361  Sum_probs=101.2

Q ss_pred             CEEEEEECCC--CCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC--CC-C----CCCHHHHHHHCCC
Q ss_conf             1499996796--410232222202454133046574464413578899858888841--01-1----2110122210257
Q gi|254780420|r  206 YHVVCIDYGI--RSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA--VT-S----VYSSPIICKLVDS  276 (396)
Q Consensus       206 ~kIvvIDfGi--K~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~--~~-~----~~~~~~~~~~~~~  276 (396)
                      .+|++||+|+  =.|+.+.|.+.|+++.+.   .+.+++.  +.|.|+|   ||-=+  .+ .    ....+.+++..+.
T Consensus         2 ~~I~Iid~g~GNi~Sv~~al~~~g~~~~ii---~~~~~i~--~~d~lIL---PGVGsf~~~m~~L~~~~l~~~i~~~~~~   73 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCII---NSESELA--QVHALVL---PGVGSFDLAMKKLEKKGLITPIKKWIAE   73 (210)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE---CCCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             779999588478999999999869987997---9999996--4896898---8867389999988630516999999976


Q ss_pred             CCCEEEEECHHHHHHHHC-----------CCCCCCCC------CCCCCCCCCCEECC-----------------CCEEEE
Q ss_conf             863478610058878752-----------85446677------67521011234778-----------------970999
Q gi|254780420|r  277 GMPMFGICLGHQLLGLAL-----------GAQTVKMY------QGHHGVNHPVKNIS-----------------NGTVEI  322 (396)
Q Consensus       277 ~iPilGIClGhQ~l~~a~-----------G~~~~kl~------~GhrG~N~Pv~~~~-----------------t~kv~i  322 (396)
                      ++||||||||+|+|+...           .+++.|++      ..|-|.|. +. ..                 ....|.
T Consensus        74 g~piLGICLGmQlLf~~seEg~~~GLgli~G~v~k~~~~~~~kvPh~GWn~-i~-~~~~~~~~~~~~~~~~~~~~~~~YF  151 (210)
T CHL00188         74 GNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNR-LE-CQNSECQNSEWVNWKAWPLNPWAYF  151 (210)
T ss_pred             CCCEEEEEHHEEEEEHHCCCCCCCCCCEECCEEEECCCCCCCCCCCCCHHH-EE-CCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             998699842102210221156767734566689993788664673205423-24-4576433444511215776770799


Q ss_pred             ECCCCCEEEEHHHCCCCCEEEEEECCC-CEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             614576157034369982899998899-80872686799778983487887767001689999999
Q gi|254780420|r  323 VSMNHGFAIDASSLPAGLEETHISLFD-SSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       323 TsqNHg~~v~~~slp~~~~v~~~~~nD-~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      .   |+|.+.+..  +.......+-.+ .-+.+++  ..+++|+|||||=|.  ..+..|+++|++
T Consensus       152 v---HSY~~~~~~--~~~~~~~~~yg~~~~~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lL~nFl~  208 (210)
T CHL00188        152 V---HSYGVMPKS--QACATTTTFYGKQQMVAAIE--YDNIFAMQFHPEKSG--EFGLWLLREFMK  208 (210)
T ss_pred             E---EEEEECCCC--CCEEEEEEEECCEEEEEEEE--ECCEEEEECCCCCCC--HHHHHHHHHHHH
T ss_conf             7---413552798--43799999639989999997--199999948800076--879999999975


No 64 
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.67  E-value=1.8e-15  Score=129.61  Aligned_cols=166  Identities=19%  Similarity=0.352  Sum_probs=101.8

Q ss_pred             CEEEEEEC-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCC
Q ss_conf             14999967-964102322222024541330465744644135788998588888410112-----110122210257863
Q gi|254780420|r  206 YHVVCIDY-GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMP  279 (396)
Q Consensus       206 ~kIvvIDf-GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iP  279 (396)
                      .||.|||+ |-=.+.++.|.+.|+++.++   .+.++|.+  .|+++|-+  |....+..     ...+.+++..+.++|
T Consensus         2 ~~IGvl~~qGn~rs~~~aL~~lG~~~~~v---~~~~di~~--ad~lILPG--G~s~am~~ll~~~gl~~~i~~~i~~gkP   74 (191)
T PRK13525          2 MKIGVLALQGAVREHIAALEALGAEAVEV---RRPEDLDE--IDGLILPG--GESTTMGKLLRDFGLLEPLREFIASGLP   74 (191)
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEE---CCHHHHHH--CCEEEECC--CCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             37999964788999999999879978998---99999953--99899789--7658999999986868999999984998


Q ss_pred             EEEEECHHHHHHHHCC-----------CCCCCCCCCCCCCC-----CCCEECCCC-EEEEECCCCCEEEEHHHCCCCCEE
Q ss_conf             4786100588787528-----------54466776752101-----123477897-099961457615703436998289
Q gi|254780420|r  280 MFGICLGHQLLGLALG-----------AQTVKMYQGHHGVN-----HPVKNISNG-TVEIVSMNHGFAIDASSLPAGLEE  342 (396)
Q Consensus       280 ilGIClGhQ~l~~a~G-----------~~~~kl~~GhrG~N-----~Pv~~~~t~-kv~iTsqNHg~~v~~~slp~~~~v  342 (396)
                      +||||||+|+|+...-           +++.|..|| |-.+     ..+..+..+ +.|+.   |+|-+..  ..++.++
T Consensus        75 ~LGIClGmqLL~~~~E~~~~~gLGli~g~V~Rn~~g-rq~~s~~~~~~~~~~~~~~~~yFv---hsp~~~~--~~~~~~~  148 (191)
T PRK13525         75 VFGTCAGMILLAKEIEGPEQEHLGLLDITVRRNAFG-RQVDSFEAELDIKGLGDPFPAVFI---RAPYIER--VGPGVEV  148 (191)
T ss_pred             EEEECHHHHEEEECCCCCCCCCCCCCCCEEEECCCC-CCCCCCCCCCCCCCCCCCCCEEEE---ECCEEEE--CCCCCEE
T ss_conf             576222121112023358977767788378634647-514444267636688998458997---0888804--4999489


Q ss_pred             EEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99988998087268679977898348788776700168999999999973
Q gi|254780420|r  343 THISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKR  392 (396)
Q Consensus       343 ~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~  392 (396)
                      +..-  ++.+-+++  ..+++++|||||-|.   | ..+.++|++|+++.
T Consensus       149 ~a~~--g~~~vaV~--~~Nv~g~QFHPEkSg---~-~~i~~~Fl~~vk~~  190 (191)
T PRK13525        149 LARV--GGRIVAVR--QGNILATSFHPELTD---D-RRVHRYFLDMVKEA  190 (191)
T ss_pred             EEEE--CCEEEEEE--ECCEEEEEECCCCCC---C-CHHHHHHHHHHHHH
T ss_conf             9998--99999999--899999980993059---8-37999999999851


No 65 
>PRK13179 consensus
Probab=99.67  E-value=1.5e-15  Score=130.25  Aligned_cols=164  Identities=21%  Similarity=0.392  Sum_probs=101.0

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-----CHHHHHHHCCCCCCE
Q ss_conf             999967964--1023222220245413304657446441357889985888884101121-----101222102578634
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-----SSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-----~~~~~~~~~~~~iPi  280 (396)
                      |++||+|+=  .|+.+.|.+.|+++.+.   .+.+++.  +.|.|+| ||=|.=......     ..+.+++..+.+.||
T Consensus         2 I~IiDyg~gNi~Sv~~al~~~g~~~~i~---~~~~~i~--~~d~lIL-PGVGsF~~~m~~L~~~~l~~~i~~~~~~~kpi   75 (207)
T PRK13179          2 IAIIDYGMGNLRSVQKGFEKVGFEAVVT---ADPKVVL--EAEKVVL-PGVGAFRDCMRNLEQGGFVEPILRVIRDGRPF   75 (207)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             9999569358999999999859987996---8999994--3998998-99786799999988537616899998659968


Q ss_pred             EEEECHHHHHHHHC-------C-----CCCCCC-----------CCCCCCCCCCCE---------ECCC-CEEEEECCCC
Q ss_conf             78610058878752-------8-----544667-----------767521011234---------7789-7099961457
Q gi|254780420|r  281 FGICLGHQLLGLAL-------G-----AQTVKM-----------YQGHHGVNHPVK---------NISN-GTVEIVSMNH  327 (396)
Q Consensus       281 lGIClGhQ~l~~a~-------G-----~~~~kl-----------~~GhrG~N~Pv~---------~~~t-~kv~iTsqNH  327 (396)
                      ||||||+|+|....       |     +++.|+           +-.|-|.|. |.         ++.. ...|..   |
T Consensus        76 LGICLGmQlLf~~S~E~g~~~GLgli~G~V~kl~~~~~~~~~~~kiPhiGWn~-i~~~~~~~~~~~~~~~~~fYFv---H  151 (207)
T PRK13179         76 LGICVGMQLLFTDSEEFGLYQGLNVIPGHVLRFPEGMREGGEELKVPHMGWNQ-LSIRRRPPAFQGIEDGTNVYFV---H  151 (207)
T ss_pred             EEEEHHHHHCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCCCCCEEEEEE-EECCCCCCHHCCCCCCCEEEEE---E
T ss_conf             99807799637988069955778783407998764434446546687511256-6436788310144567707998---4


Q ss_pred             CEEEEHHHCCCCCEEEEEECCCCE-EEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             615703436998289999889980-8726867997789834878877670016899999999
Q gi|254780420|r  328 GFAIDASSLPAGLEETHISLFDSS-NCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       328 g~~v~~~slp~~~~v~~~~~nD~t-iegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      +|.+.+..  ++. +++..-.+.. +..+.  ..+++|+|||||=|.  ..+..|+++|+++
T Consensus       152 SY~~~~~~--~~~-i~~~~~yg~~~~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lLknF~el  206 (207)
T PRK13179        152 SYYVKPDD--ESV-VAATTGYGIEFCAAVW--KDNIVATQFHPEKSQ--AVGLSILKNFGEM  206 (207)
T ss_pred             CCEECCCC--CCC-EEEEEECCCEEEEEEE--ECCEEEEECCHHHCC--HHHHHHHHHHHHC
T ss_conf             31641578--451-8999848997999999--699999958801255--8689999999713


No 66 
>PRK13173 consensus
Probab=99.67  E-value=2.2e-15  Score=128.97  Aligned_cols=167  Identities=20%  Similarity=0.342  Sum_probs=100.9

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC-CCC----CCCHHHHHHHCCCCC
Q ss_conf             14999967964--10232222202454133046574464413578899858888841-011----211012221025786
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA-VTS----VYSSPIICKLVDSGM  278 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~-~~~----~~~~~~~~~~~~~~i  278 (396)
                      .+|++||+|+=  .|+.+.|...|+++.++   .+.+++.  +.|.|+|- |=|.=. ...    ....+.++... .+.
T Consensus         2 ~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lILP-GVGsF~~~m~~L~~~~l~~~i~~~~-~~k   74 (211)
T PRK13173          2 TKIALLDYGMGNLHSASKALSAVGAEVSIT---NDPKVIA--AADKIVFP-GVGAMRDCMAGMHEAGIDEVVRQAI-FNK   74 (211)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEEC-CCCCHHHHHHHHHHCCHHHHHHHHH-CCC
T ss_conf             879999689449999999999869988996---7999984--38968975-7786899999988629799999886-299


Q ss_pred             CEEEEECHHHHHHHHC---C---------CCCCCC------------CCCCCCCCCCC--------E-ECCC-CEEEEEC
Q ss_conf             3478610058878752---8---------544667------------76752101123--------4-7789-7099961
Q gi|254780420|r  279 PMFGICLGHQLLGLAL---G---------AQTVKM------------YQGHHGVNHPV--------K-NISN-GTVEIVS  324 (396)
Q Consensus       279 PilGIClGhQ~l~~a~---G---------~~~~kl------------~~GhrG~N~Pv--------~-~~~t-~kv~iTs  324 (396)
                      ||||||||+|+|+...   |         |++.|+            +..|-|.|.=.        . ++.. ...|.. 
T Consensus        75 piLGICLGMQlLf~~s~E~g~~~GLgli~G~V~~l~~~~~~~~~~~~kvPhiGWn~v~~~~~~~~l~~~i~~~~~fYFv-  153 (211)
T PRK13173         75 PVMAICVGMQALFEQSAENGGTPCLSILDGTVKAFDPSWKDPKGVQIKVPHMGWNTISGMDFEHPLWNGIDDKAHFYFV-  153 (211)
T ss_pred             CEEEEEHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEEEE-
T ss_conf             9899818889850689889996713066006987674446755554346600034543357653644499878607998-


Q ss_pred             CCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4576157034369982899998899808726867997789834878877670016899999999
Q gi|254780420|r  325 MNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       325 qNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                        |+|.++++.  .+..+...+-...-+..+.  ..+++|+|||||=|.  ..+..|+++|++.
T Consensus       154 --HSY~~~~~~--~~~~~~~~~yg~~f~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lLknFl~~  209 (211)
T PRK13173        154 --HSYYCEPAD--SSQVAAICDYGQPFCASIL--KDNLFATQFHPEKSH--TAGLQLLKNFVEW  209 (211)
T ss_pred             --EEEEEECCC--CCEEEEEEECCCEEEEEEE--ECCEEEEECCHHHCC--HHHHHHHHHHHCC
T ss_conf             --667870378--2507899838988999999--699999908801245--8689999999735


No 67 
>PRK13148 consensus
Probab=99.66  E-value=2.9e-15  Score=128.10  Aligned_cols=165  Identities=24%  Similarity=0.399  Sum_probs=96.6

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC--C-CC----CCCHHHHHHHCCC
Q ss_conf             14999967964--10232222202454133046574464413578899858888841--0-11----2110122210257
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA--V-TS----VYSSPIICKLVDS  276 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~--~-~~----~~~~~~~~~~~~~  276 (396)
                      .+|++||+|+=  .|+.|.|...|.+..+.- ..+.++|.  +.|.|+|   ||-=+  . ..    ....+.+++.. .
T Consensus         2 ~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~i-~~~~~~i~--~~d~lIL---PGVGsF~~am~~L~~~~l~~~i~~~~-~   74 (225)
T PRK13148          2 STIAIVDYGMGNFHSVARALQHAAPDADIRI-CNRPEQID--AADRVVF---PGQGAMPDCMRTLNESGLRAAVERAA-A   74 (225)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCCEEE-ECCHHHHH--HCCEEEE---CCCCCHHHHHHHHHHCCHHHHHHHHH-C
T ss_conf             8799997994499999999998578973999-89999995--4997998---99788799999988648799999986-3


Q ss_pred             CCCEEEEECHHHHHHHHC--C---------CCCCC--------------------------CCCCCCCCCCCCEE-----
Q ss_conf             863478610058878752--8---------54466--------------------------77675210112347-----
Q gi|254780420|r  277 GMPMFGICLGHQLLGLAL--G---------AQTVK--------------------------MYQGHHGVNHPVKN-----  314 (396)
Q Consensus       277 ~iPilGIClGhQ~l~~a~--G---------~~~~k--------------------------l~~GhrG~N~Pv~~-----  314 (396)
                      +.||||||||+|+|....  |         |++.|                          ++..|-|.|. |..     
T Consensus        75 ~kpiLGICLGMQlLf~~SeEg~~~GLgli~G~V~kl~~~~~~~~~~~~~~~~~~~~~~~~~lkiPh~GWn~-v~~~~~~~  153 (225)
T PRK13148         75 SKPLMGVCVGEQMLFERSEEGDTPCLGIFPGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGWNQ-VRQTRSHA  153 (225)
T ss_pred             CCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE-EECCCCCC
T ss_conf             89869982778876624522697756558789998147654564211233345554435488888886120-37789971


Q ss_pred             ----CCC-CEEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             ----789-7099961457615703436998289999889980872686799778983487887767001689999999
Q gi|254780420|r  315 ----ISN-GTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       315 ----~~t-~kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                          +.. ...|..   |+|.+.+..  ....+...+-...-+..+.  ..++||+|||||=|.  ..+..|+++|++
T Consensus       154 l~~~i~~~~~fYFv---HSY~~~~~~--~~~~~a~t~yg~~f~s~v~--~~Ni~G~QFHPEKS~--~~Gl~lLknFl~  222 (225)
T PRK13148        154 LWEGIPDGTHFYFV---HSYYAAPSD--PALTTGVTDYGVAFTCAVA--AANIFAVQFHPEKSA--EHGLRLYRNFVD  222 (225)
T ss_pred             HHCCCCCCCEEEEE---EEEEECCCC--CCCEEEEEECCCEEEEEEE--ECCEEEEECCHHHHC--HHHHHHHHHHHC
T ss_conf             21266778706887---545631688--1558999858998999999--699999908812315--779999999876


No 68 
>PRK13151 consensus
Probab=99.66  E-value=6.4e-16  Score=132.77  Aligned_cols=165  Identities=25%  Similarity=0.370  Sum_probs=101.0

Q ss_pred             EEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC--HHHHHHHCCCCCCEEE
Q ss_conf             4999967964--10232222202454133046574464413578899858888841011211--0122210257863478
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLVDSGMPMFG  282 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~--~~~~~~~~~~~iPilG  282 (396)
                      ||++||+|+=  .|+.+.|...|+++.+.   .+.+++.  +.|+|+| ||=|.=..+-...  ..++..+...+.||||
T Consensus         2 kI~IiDyg~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIl-PGVGsf~~~m~~L~~~~l~~~i~~~~kpiLG   75 (195)
T PRK13151          2 KIIIIDTACANLASLKFCLDRLGFNATIS---RDLKELE--SADKLFL-PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLG   75 (195)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHCCCCEEE
T ss_conf             89999479609999999999859987996---7999994--4896998-8889999999999874778889863996688


Q ss_pred             EECHHHHHHHHC-----------CCCCCCC------CCCCCCCCCCCE-------ECCCCEEEEECCCCCEEEEHHHCCC
Q ss_conf             610058878752-----------8544667------767521011234-------7789709996145761570343699
Q gi|254780420|r  283 ICLGHQLLGLAL-----------GAQTVKM------YQGHHGVNHPVK-------NISNGTVEIVSMNHGFAIDASSLPA  338 (396)
Q Consensus       283 IClGhQ~l~~a~-----------G~~~~kl------~~GhrG~N~Pv~-------~~~t~kv~iTsqNHg~~v~~~slp~  338 (396)
                      ||||+|+|+...           .+.+.|+      +..|-|.|. |.       ++.....|..   |+|+++.+    
T Consensus        76 ICLGMQlL~~~seE~~~~gLgli~g~v~k~~~~~~~~vPhiGWn~-v~~~~~l~~~i~~~~fYFv---HSY~~~~~----  147 (195)
T PRK13151         76 ICLGMQILGNFSEELNQETLKLIDFTTQKFKAKEGFTFPHMGWNQ-VHSSHALFKGLEGAYFYFV---HSYCVGLG----  147 (195)
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEHHH-CCCCCHHHCCCCCCEEEEE---EEEECCCC----
T ss_conf             776478765147576757626420268886465578886741122-5667701216667627887---30452676----


Q ss_pred             CCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             828999988998087268679977898348788776700168999999999
Q gi|254780420|r  339 GLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       339 ~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      +..+...+-...-+..++  ...++|+|||||=|.  ..+..|.++|++-+
T Consensus       148 ~~~ia~~~y~~~f~a~v~--k~Ni~G~QFHPEKS~--~~Gl~lL~nFlk~i  194 (195)
T PRK13151        148 EYTIADCEYSQKFSASVM--KDNFYGVQFHPERSS--EAGEILISNFIKDI  194 (195)
T ss_pred             CCEEEEEECCCEEEEEEE--ECCEEEEECCCHHCC--HHHHHHHHHHHHHC
T ss_conf             563789737988999999--199999928800305--87999999998752


No 69 
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.66  E-value=3.1e-15  Score=127.90  Aligned_cols=168  Identities=26%  Similarity=0.450  Sum_probs=104.1

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCC
Q ss_conf             14999967964--102322222024541330465744644135788998588888410112-----11012221025786
Q gi|254780420|r  206 YHVVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGM  278 (396)
Q Consensus       206 ~kIvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~i  278 (396)
                      .+|++||+|.=  +|+.+.|.+.|+++.|.   .+.++|.  +.|+||| ||=|.=.++-.     ...+.+++....+.
T Consensus         2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs---~d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~k   75 (204)
T COG0118           2 MMVAIIDYGSGNLRSVKKALERLGAEVVVS---RDPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESGK   75 (204)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEE---CCHHHHH--HCCEEEE-CCCCCHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf             789999728635999999999759806981---6988971--0888786-697888999998886366999999975599


Q ss_pred             CEEEEECHHHHHHHHC-------C-----CCCCC-----CCCCCCCCCC-------CCEE-CCC-CEEEEECCCCCEEEE
Q ss_conf             3478610058878752-------8-----54466-----7767521011-------2347-789-709996145761570
Q gi|254780420|r  279 PMFGICLGHQLLGLAL-------G-----AQTVK-----MYQGHHGVNH-------PVKN-ISN-GTVEIVSMNHGFAID  332 (396)
Q Consensus       279 PilGIClGhQ~l~~a~-------G-----~~~~k-----l~~GhrG~N~-------Pv~~-~~t-~kv~iTsqNHg~~v~  332 (396)
                      |+||||||+|+|....       |     +++.|     +|..|-|.|+       |... +.. .++|+.   |+|.+.
T Consensus        76 P~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFV---HSY~~~  152 (204)
T COG0118          76 PFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFV---HSYYVP  152 (204)
T ss_pred             CEEEEEHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCEEEEE---EEEEEC
T ss_conf             77998175777664154368988702130168876888887886665223126787443289988779999---787615


Q ss_pred             HHHCCCCCEEEEEECCCC-EEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             343699828999988998-087268679977898348788776700168999999999
Q gi|254780420|r  333 ASSLPAGLEETHISLFDS-SNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       333 ~~slp~~~~v~~~~~nD~-tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      +  ...+-.+...+ ... -...+.  +.++|++|||||-|.  .=+..|..+|++++
T Consensus       153 ~--~~~~~v~~~~~-YG~~f~AaV~--k~N~~g~QFHPEKSg--~~Gl~lL~NFl~~~  203 (204)
T COG0118         153 P--GNPETVVATTD-YGEPFPAAVA--KDNVFGTQFHPEKSG--KAGLKLLKNFLEWI  203 (204)
T ss_pred             C--CCCCEEEEECC-CCCEEEEEEE--ECCEEEEECCCCCCH--HHHHHHHHHHHHHC
T ss_conf             7--99861888646-8983589997--088999923863113--87899999998444


No 70 
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.65  E-value=3.3e-15  Score=127.72  Aligned_cols=265  Identities=18%  Similarity=0.295  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCC-------------------
Q ss_conf             7689999998539842366327654589789888774158874321011013333211168-------------------
Q gi|254780420|r  127 DTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSE-------------------  187 (396)
Q Consensus       127 DTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~-------------------  187 (396)
                      -|-.=+|.||.-|.+.-+|..-.+...+ ++.++++.-+........++....+..|....                   
T Consensus       189 PTQhSVkeLR~iGI~PDiii~Rs~~~l~-~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~~  267 (533)
T COG0504         189 PTQHSVKELRSIGIQPDILICRSERPLP-EEERRKIALFCNVPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLNA  267 (533)
T ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf             8427789999658996659994588799-899999998638988885734667888771899987532789999858998


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCEEEEEECC-----CCCHHHHHHHH----HCCCCEEEECCC-C-----HHHHHHCCCCE
Q ss_conf             ---653445434434677777149999679-----64102322222----024541330465-7-----44644135788
Q gi|254780420|r  188 ---KIWKWGEETSFLKSSDAKYHVVCIDYG-----IRSNLLRVLSS----LGCRITIVGAET-S-----YKDIMSLQPDG  249 (396)
Q Consensus       188 ---~~~~~~~~~~~~~~~~~~~kIvvIDfG-----iK~nIlr~L~~----~g~~v~Vvp~~~-~-----~~~i~~~~pdg  249 (396)
                         ....|..-.....++..+.+|+++-==     +=.+++..|..    .+++|.+.--++ +     .+++..+ .||
T Consensus       268 ~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dg  346 (533)
T COG0504         268 PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDG  346 (533)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHC-CCE
T ss_conf             8755677999999852877726999987675860679999999995076419840269875123665444556631-887


Q ss_pred             EEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCC-----CCCCCCEECCCCEEE---
Q ss_conf             998588888410112110122210257863478610058878752854466776752-----101123477897099---
Q gi|254780420|r  250 VLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH-----GVNHPVKNISNGTVE---  321 (396)
Q Consensus       250 i~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Ghr-----G~N~Pv~~~~t~kv~---  321 (396)
                      |++-+|=|.-....  -+..++..-+.++|.||||||+|+....+--.+..|+-.|-     -.-+||.++......   
T Consensus       347 IlVPGGFG~RG~eG--kI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~  424 (533)
T COG0504         347 ILVPGGFGYRGVEG--KIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVD  424 (533)
T ss_pred             EEECCCCCCCCHHH--HHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             99689877675588--9999999986699868885667899999999851976576435488999865883354236776


Q ss_pred             -------------EE----------------CCCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEECCCCEE-EECC
Q ss_conf             -------------96----------------145761570343---6-998289999889980872686799778-9834
Q gi|254780420|r  322 -------------IV----------------SMNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRLIDQPVF-SVQY  367 (396)
Q Consensus       322 -------------iT----------------sqNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~~~~~~~-~vQf  367 (396)
                                   +.                -+.|-|.|.++-   + ..+|.+..++.+.+.+|-++.++.|+| ++||
T Consensus       425 lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Qf  504 (533)
T COG0504         425 LGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQF  504 (533)
T ss_pred             CCCEEECCCEEEECCCCCHHHHHHCCCCEEEECCCHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf             77500416610112788689987387714002153133088999999868969999868998689998389964898746


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             8788776700168999999999973578
Q gi|254780420|r  368 HPESSPGPQDSYYLFSTFIDFMHKRKTM  395 (396)
Q Consensus       368 HPEa~PGP~D~~~~F~~F~~~i~~~k~~  395 (396)
                      |||=..-|.+.+.+|..|++...+++..
T Consensus       505 HPEf~SrP~~phPlf~~fv~Aa~~~~~~  532 (533)
T COG0504         505 HPEFKSRPLRPHPLFVGFVKAALEYKKD  532 (533)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             6313478999983479999999975317


No 71 
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; InterPro: IPR010139   Imidazole glycerol phosphate synthetase (IGPS) is a key metabolic enzyme, which links amino acid and nucleotide biosynthesis: it catalyses the closure of the imidazole ring within histidine biosynthesis (fifth step), and provides the substrate for de novo purine biosynthesis. IGPS consists of two different subunits: HisH, a glutamine amidotransferase (glutaminase), and HisF, a synthase (cyclase). HisH functions to provide a source of nitrogen, which is required for the synthesis of histidine and purines. In the HisH glutaminase reaction, the hydrolysis of glutamine yields ammonia, which is then used by HisF in the subsequent synthase reaction. The X-ray structure of the HisH/HisF heterodimer of IGPS reveals a putative tunnel for the transfer of ammonia from HisH to HisF via a (beta-alpha)8 barrel fold within HisF that abuts HisH . Ammonia tunnels connect the glutaminase and synthase active sites.   HisH belongs to a large group of enzymes found in diverse and fundamental anabolic pathways. These enzymes share a common domain, referred to as the type-I glutamine amidotransferase (GATase) domain, which can occur either as single polypeptides (as with HisH) or as domains of large multifunctional proteins.; GO: 0016763 transferase activity transferring pentosyl groups, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=99.65  E-value=5.1e-16  Score=133.49  Aligned_cols=167  Identities=27%  Similarity=0.455  Sum_probs=107.5

Q ss_pred             EEEEECCCC--CH----HHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCC-CCCCCC---C-CHHHHHHHCCC
Q ss_conf             999967964--10----2322222024541330465744644135788998588888-410112---1-10122210257
Q gi|254780420|r  208 VVCIDYGIR--SN----LLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGD-PAVTSV---Y-SSPIICKLVDS  276 (396)
Q Consensus       208 IvvIDfGiK--~n----Ilr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGd-P~~~~~---~-~~~~~~~~~~~  276 (396)
                      ||+||+|+=  .|    +.+.|.+.|++..|+.-+  ++++.  ..|.||| ||=|. ++..+.   . ..+++......
T Consensus         1 i~viDYG~GNL~SlyrGV~~Al~~~G~~~~v~~~~--y~~~~--~aD~l~L-PGVG~F~~aM~~l~~~~~~~~~~~~~~~   75 (211)
T TIGR01855         1 IVVIDYGVGNLRSLYRGVKRALKRVGAEPVVVKDS--YKELE--KADKLIL-PGVGAFKAAMARLRELGLLDLLELVVKK   75 (211)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHH--CCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             97874371656889999999998449817996286--03431--0686785-7858889999998850058788999961


Q ss_pred             CCCEEEEECHHHHHHHHC---CC----------CCC---------CCCCCCCCCC--CCCEEC---CC-----CEEEEEC
Q ss_conf             863478610058878752---85----------446---------6776752101--123477---89-----7099961
Q gi|254780420|r  277 GMPMFGICLGHQLLGLAL---GA----------QTV---------KMYQGHHGVN--HPVKNI---SN-----GTVEIVS  324 (396)
Q Consensus       277 ~iPilGIClGhQ~l~~a~---G~----------~~~---------kl~~GhrG~N--~Pv~~~---~t-----~kv~iTs  324 (396)
                      ++|+||||||+|||....   |.          ++.         |+|-+|-|.|  +|+++.   ..     .++|.. 
T Consensus        76 ~~P~lGiCLGMQLLfe~SeE~g~~~~GLG~i~G~V~k~~~~~~~~~lk~PHmGWN~v~~~~~~C~ll~g~~~~~~~YFV-  154 (211)
T TIGR01855        76 KKPVLGICLGMQLLFERSEEGGGEVPGLGLIKGKVVKLEARVSLSKLKVPHMGWNEVEPVKESCPLLKGIDKGAYFYFV-  154 (211)
T ss_pred             CCCEEEEEHHHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHCCCHHCCCCCCCCEEEE-
T ss_conf             8968999802343001562437886653112761342056778872545756564231231155113077667815568-


Q ss_pred             CCCCEEEEHHHCCC-CCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             45761570343699-82899998899808726867997789834878877670016899999999
Q gi|254780420|r  325 MNHGFAIDASSLPA-GLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       325 qNHg~~v~~~slp~-~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                        |+|.+...+  . +...+..+---.-.+.++  ...++|+|||||=|.  +=+..|+++|+++
T Consensus       155 --HSY~~~~~~--~S~~v~a~~~YG~~F~AaV~--~~n~~G~QFHPEKS~--~~G~~lL~nf~~~  211 (211)
T TIGR01855       155 --HSYYAVCEE--ESEAVLAKADYGEKFTAAVQ--KDNIFGTQFHPEKSG--KTGLKLLKNFLEL  211 (211)
T ss_pred             --EEEEEECCC--CHHHEEEEHHCCCCEEEEEE--CCCEEEEEECCHHHH--HHHHHHHHHHHCC
T ss_conf             --866776168--81150112001863044665--487899972856888--8999999998529


No 72 
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate.  gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.63  E-value=5.7e-15  Score=126.06  Aligned_cols=177  Identities=19%  Similarity=0.304  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHCCCCEEEECCCCHHHHHHC--CCCEEEECCCCCCC--CCCCCC---CHHHHHHHCC-CC-CCEEEEECHH
Q ss_conf             10232222202454133046574464413--57889985888884--101121---1012221025-78-6347861005
Q gi|254780420|r  217 SNLLRVLSSLGCRITIVGAETSYKDIMSL--QPDGVLLSNGPGDP--AVTSVY---SSPIICKLVD-SG-MPMFGICLGH  287 (396)
Q Consensus       217 ~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~--~pdgi~lSnGPGdP--~~~~~~---~~~~~~~~~~-~~-iPilGIClGh  287 (396)
                      .+=++.|..-|++|+-+|++.+.+++..+  +-.||++-+|--|=  ......   +.+...+.-+ +. -||+|+|||+
T Consensus        23 ASYVK~lEsaGArVVPI~~~~~~~~~~~l~~~INGvLfpGG~~~~~~s~y~~~~~~i~~~A~e~Nd~G~yFPiwGtCLGF  102 (273)
T cd01747          23 ASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF  102 (273)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHH
T ss_conf             89899999789869987469998999999875467996786620566708999999999999985089956333330309


Q ss_pred             HHHHHHCCCCCCCC-CCCCCCCCCCCEE---CCCCEE---------------EEECCCCCEEEEHHHC------CCCCEE
Q ss_conf             88787528544667-7675210112347---789709---------------9961457615703436------998289
Q gi|254780420|r  288 QLLGLALGAQTVKM-YQGHHGVNHPVKN---ISNGTV---------------EIVSMNHGFAIDASSL------PAGLEE  342 (396)
Q Consensus       288 Q~l~~a~G~~~~kl-~~GhrG~N~Pv~~---~~t~kv---------------~iTsqNHg~~v~~~sl------p~~~~v  342 (396)
                      |+|.....++..-+ .+.......|..-   ....|.               -+|.+||.|.|.++++      .+-+++
T Consensus       103 elL~~~~s~~~~~l~~~~s~n~~~pL~ft~~~~~Srlf~~~~~~l~~~l~~~~~t~n~H~~gitp~~f~~~~~L~~~f~i  182 (273)
T cd01747         103 ELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNV  182 (273)
T ss_pred             HHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHEE
T ss_conf             99999973996123102677733010144676446376519999999985076004330541678887456888744265


Q ss_pred             EEEECC-CCE--EEEEEECCCCEEEECCCCCCCC--------CCCC------HHHHHHHHHHHHHHHC
Q ss_conf             999889-980--8726867997789834878877--------6700------1689999999999735
Q gi|254780420|r  343 THISLF-DSS--NCGFRLIDQPVFSVQYHPESSP--------GPQD------SYYLFSTFIDFMHKRK  393 (396)
Q Consensus       343 ~~~~~n-D~t--iegi~~~~~~~~~vQfHPEa~P--------GP~D------~~~~F~~F~~~i~~~k  393 (396)
                      +..|.. +|.  |--++|+++|+||||||||-.+        =||+      +.|+=+-|++.-.+.+
T Consensus       183 lstn~D~~g~eFVStiE~k~YP~yg~QfHPEK~~FEw~~~~~i~Hs~~ai~~sq~~a~fFV~eaRkn~  250 (273)
T cd01747         183 LTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSN  250 (273)
T ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             68776599988988630324764667406875765557767899899999999999999999996389


No 73 
>PRK13147 consensus
Probab=99.62  E-value=1.1e-14  Score=124.09  Aligned_cols=164  Identities=22%  Similarity=0.329  Sum_probs=96.5

Q ss_pred             EEEEEECCCC--CHHHHHHHH------HCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC--C----CCC--CCHHHH
Q ss_conf             4999967964--102322222------02454133046574464413578899858888841--0----112--110122
Q gi|254780420|r  207 HVVCIDYGIR--SNLLRVLSS------LGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA--V----TSV--YSSPII  270 (396)
Q Consensus       207 kIvvIDfGiK--~nIlr~L~~------~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~--~----~~~--~~~~~~  270 (396)
                      ||++||+|+=  .|+.|.|..      .++++.+.   .+.+++.  +.|.|+|   ||-=+  .    ...  ...+.+
T Consensus         2 kI~IIDyg~GNi~Sv~~al~~~~~~~gl~~~~~i~---~~~~~i~--~~d~lIL---PGVGsF~~~m~~L~~~~~l~~~i   73 (211)
T PRK13147          2 RVVVIDYNGGNLASAARALEKAATRKGIDATVVIS---ADPTDVR--NADRIVL---PGQGAFADCAQGLAAIPGLRNAI   73 (211)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEE---CCHHHHH--HCCEEEE---CCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             89999379436999999999887535888439996---9999996--4997898---98664899999988635859999


Q ss_pred             HHHCCCCCCEEEEECHHHHHHHHC---C---------CCCCCC-----CCCCCCCCC--------CCEE-CC-CCEEEEE
Q ss_conf             210257863478610058878752---8---------544667-----767521011--------2347-78-9709996
Q gi|254780420|r  271 CKLVDSGMPMFGICLGHQLLGLAL---G---------AQTVKM-----YQGHHGVNH--------PVKN-IS-NGTVEIV  323 (396)
Q Consensus       271 ~~~~~~~iPilGIClGhQ~l~~a~---G---------~~~~kl-----~~GhrG~N~--------Pv~~-~~-t~kv~iT  323 (396)
                      +..+..+.||||||||+|+|+...   |         +++.|+     +..|-|.|.        |..+ +. ..+.|..
T Consensus        74 ~~~~~~~~piLGICLGMQlL~~~s~E~g~~~GLgli~G~v~kl~~~~~kvPhiGWn~i~~~~~~~~~~~~~~~~~~fYFv  153 (211)
T PRK13147         74 ETATAAGTPFLGICVGMQLMAERGLEHERTPGFGWISGEIARMDAPGLRLPHMGWNTLDFTPGAHPLTDGLIPGDHGYFV  153 (211)
T ss_pred             HHHHHCCCCEEEECHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECEEEEECCCCCCHHHCCCCCCCEEEEE
T ss_conf             99997699879983675752164653798774007702899898767888762526887057866432476768869996


Q ss_pred             CCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             1457615703436998289999889980872686799778983487887767001689999999
Q gi|254780420|r  324 SMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       324 sqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                         |+|++.+.. +.. .+...+-.+.-+..+.  ...++|+|||||=|.  ..+..|+++|+.
T Consensus       154 ---HSY~~~~~~-~~~-~~~~~~yg~~~~s~v~--k~Ni~G~QFHPEKS~--~~Gl~ll~nFlk  208 (211)
T PRK13147        154 ---HSYALRDGA-DSD-LVATTQYGGQVPAIVA--RGNRAGTQFHVEKSQ--EVGLTILGNFLR  208 (211)
T ss_pred             ---CCCCCCCCC-CCC-EEEEEECCCEEEEEEE--ECCEEEEECCCHHCC--HHHHHHHHHHHC
T ss_conf             ---123406888-876-8999989998999999--899999968800146--868999999867


No 74 
>PRK06186 hypothetical protein; Validated
Probab=99.55  E-value=5.3e-14  Score=119.25  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=99.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-----CCCCCCCEECCC---
Q ss_conf             578899858888841011211012221025786347861005887875285446677675-----210112347789---
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-----HGVNHPVKNISN---  317 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-----rG~N~Pv~~~~t---  317 (396)
                      +.|||++-+|=|.=..  ...+..++..-+.+||.||||||+|+....+--.+..++-.+     --..|||.....   
T Consensus        53 ~~dgilv~pGfG~RG~--eGki~Ai~yARen~iP~LGICLGmQ~avIEfARnvlgl~dAnS~Efd~~~~~pvi~~l~~~~  130 (229)
T PRK06186         53 GFDGIWCVPGSPYRNE--DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAEHAETDPEASRPVIAPLSCSL  130 (229)
T ss_pred             CCCEEEECCCCCCCCH--HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCH
T ss_conf             5998998998777656--38999999998769987864277899999999986599888764557899971893688732


Q ss_pred             ----CEEEEEC----------------CCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEECCCCEE-EECCCCCCC
Q ss_conf             ----7099961----------------45761570343---6-998289999889980872686799778-983487887
Q gi|254780420|r  318 ----GTVEIVS----------------MNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRLIDQPVF-SVQYHPESS  372 (396)
Q Consensus       318 ----~kv~iTs----------------qNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~~~~~~~-~vQfHPEa~  372 (396)
                          .++.++.                +.|-|.|.++=   | ..+|.++.++.. +.+|-++.++.|+| |||||||=.
T Consensus       131 ~~~~~~~~l~~~s~~~~iYg~~~i~ERHRHRYEvN~~y~~~le~~Gl~~sG~~~~-~~veiiEl~~Hpffvg~QfHPEf~  209 (229)
T PRK06186        131 VEATAAIRLRPGSLIARAYGTDEIEEGYHCRYGVNPEFAAALESGALRVSGWDEE-GDVRAVELPGHPFFVATLFQPERA  209 (229)
T ss_pred             HCCCCCEEECCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCC-CCEEEEEECCCCCEEEECCCCCCC
T ss_conf             0387515748998399986965301332345546989999999789899998899-988999928998589965875456


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             76700168999999999
Q gi|254780420|r  373 PGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       373 PGP~D~~~~F~~F~~~i  389 (396)
                      .=|...+.+|..|+.--
T Consensus       210 Srp~~phPlF~~Fi~AA  226 (229)
T PRK06186        210 ALAGRLPPLVRAFLRAC  226 (229)
T ss_pred             CCCCCCCCCHHHHHHHH
T ss_conf             89999881599999998


No 75 
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.55  E-value=2.4e-14  Score=121.70  Aligned_cols=144  Identities=25%  Similarity=0.394  Sum_probs=101.0

Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-----CCCCCCCEE
Q ss_conf             464413578899858888841011211012221025786347861005887875285446677675-----210112347
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-----HGVNHPVKN  314 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-----rG~N~Pv~~  314 (396)
                      .+.++ +.|||++.+|=|.=..  ...+..++..-+.++|.||||||+|++...+--.+.+++-.+     --..|||..
T Consensus        50 ~~~L~-~~dgilvpgGFG~rG~--eGki~Ai~yARen~iPfLGIClGmQ~aviE~ARnvlg~~~A~s~E~~~~~~~~vi~  126 (235)
T cd01746          50 EEALK-GADGILVPGGFGIRGV--EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVD  126 (235)
T ss_pred             HHHHH-CCCCEEECCCCCCCCH--HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
T ss_conf             99973-0697895788887764--58899999999739972544103432268999875299776742247999987799


Q ss_pred             CCCC----------------EEEEE----------------CCCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEEC
Q ss_conf             7897----------------09996----------------145761570343---6-9982899998899808726867
Q gi|254780420|r  315 ISNG----------------TVEIV----------------SMNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRLI  358 (396)
Q Consensus       315 ~~t~----------------kv~iT----------------sqNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~~  358 (396)
                      ....                .+.+.                -+.|-|.|.++=   | ..++.++.++.+++.+|.++.+
T Consensus       127 ~~~~~~~~~~~GgTmRLG~~~~~l~~~s~~~~~y~~~~i~ERHRHRYevN~~y~~~le~~Gl~~sG~~~~~~~veiiEl~  206 (235)
T cd01746         127 LMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELP  206 (235)
T ss_pred             ECHHHCCCHHCCCCEEEEEEEEEECCCHHHHHHCCCCEEEEEECCCEEECHHHHHHHHHCCCEEEEECCCCCEEEEEECC
T ss_conf             67566164001341342025776224306667518832312302355678999999986896899998999979999868


Q ss_pred             CCCEE-EECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99778-98348788776700168999999
Q gi|254780420|r  359 DQPVF-SVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       359 ~~~~~-~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                      +.|+| |||||||=..=|...+-||..|+
T Consensus       207 ~Hpffvg~QfHPEf~Srp~~phPlF~~fi  235 (235)
T cd01746         207 DHPFFVGTQFHPEFKSRPLKPHPLFVGFV  235 (235)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCHHHHC
T ss_conf             99847887577644689999993836439


No 76 
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.54  E-value=6.9e-14  Score=118.48  Aligned_cols=161  Identities=25%  Similarity=0.347  Sum_probs=97.0

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-----CHHHHHHHCCCCCCE
Q ss_conf             999967964--1023222220245413304657446441357889985888884101121-----101222102578634
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-----SSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-----~~~~~~~~~~~~iPi  280 (396)
                      |++||+|+=  .|+.+.|...|+++.+.   .+.+++.  +.|.|+|- |=|.=..+-..     ....+++.  .+.||
T Consensus         2 I~IIDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lILP-GVGsF~~am~~L~~~~l~~~i~~~--~~kpi   73 (192)
T PRK13142          2 IVIVDYGLGNISNVKRAIEHLGYEVVVS---NTSKIID--QAETIILP-GVGHFKDAMSEIKRLNLNAILAKN--TDKKM   73 (192)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEEC-CCCCHHHHHHHHHHCCHHHHHHHH--CCCCE
T ss_conf             8999769458999999999859987996---8999984--37958975-768789999998875859999986--28985


Q ss_pred             EEEECHHHHHHHHC------C-----CCCCCC----CCCCCCCCCCCEE--CCCCEEEEECCCCCEEEEHHHCCCCCEEE
Q ss_conf             78610058878752------8-----544667----7675210112347--78970999614576157034369982899
Q gi|254780420|r  281 FGICLGHQLLGLAL------G-----AQTVKM----YQGHHGVNHPVKN--ISNGTVEIVSMNHGFAIDASSLPAGLEET  343 (396)
Q Consensus       281 lGIClGhQ~l~~a~------G-----~~~~kl----~~GhrG~N~Pv~~--~~t~kv~iTsqNHg~~v~~~slp~~~~v~  343 (396)
                      ||||||+|+|....      |     +++.|+    +..|-|.|.-...  +.....|..   |+|.+..+    +-.+.
T Consensus        74 LGICLGMQlL~~~SeEg~~~GLgli~G~V~kl~~~~~vPhmGWn~v~~~~~~~~~~fYFv---HSY~~~~~----~~~~a  146 (192)
T PRK13142         74 IGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLNQDVYFV---HSYQAPMS----ENVIA  146 (192)
T ss_pred             EEEECCEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEECCHHHCCCCCCCCCCEEEE---EEEECCCC----CCEEE
T ss_conf             896501014311455567677577868999836899786658156253385423644799---87652787----57899


Q ss_pred             EEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99889980872686799778983487887767001689999999
Q gi|254780420|r  344 HISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       344 ~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      ..+- ...+-++. ...++||+|||||-|.  ..+..|.++|++
T Consensus       147 ~t~y-g~~f~s~v-~~~Ni~G~QFHPEKS~--~~Gl~lLknFl~  186 (192)
T PRK13142        147 YAQY-GADIPAIV-QFNNYIGIQFHPEKSG--TYGLQILRQAIQ  186 (192)
T ss_pred             EEEC-CCEEEEEE-EECCEEEEECCHHHCC--HHHHHHHHHHHC
T ss_conf             9988-99699999-9599999958812355--858999999963


No 77 
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=99.54  E-value=1.2e-13  Score=116.66  Aligned_cols=157  Identities=17%  Similarity=0.261  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-----CHHHHHHH-CCCCCCEEEEECHHHH
Q ss_conf             41023222220245413304657446441357889985888884101121-----10122210-2578634786100588
Q gi|254780420|r  216 RSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-----SSPIICKL-VDSGMPMFGICLGHQL  289 (396)
Q Consensus       216 K~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-----~~~~~~~~-~~~~iPilGIClGhQ~  289 (396)
                      =++..+.|.+.|++++++   .+.++|.+  .|+|||- | |-...+...     ..+.+++. .++++|+||||||+|+
T Consensus         8 l~sv~nal~~lG~e~~~v---~~p~di~~--ad~LILP-G-g~s~~~~~ll~~~gl~~~l~e~i~~~~kPiLGIClGMqL   80 (188)
T pfam01174         8 VEEHEEAIKKCGAENKTV---KRPEDLAQ--CDALIIP-G-GESTAMSLLAKRYGFYEPLYEFVHNPNKPIWGTCAGLIL   80 (188)
T ss_pred             HHHHHHHHHHCCCCEEEE---CCHHHHHC--CCEEEEC-C-CCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHHHH
T ss_conf             999999999869987996---89999940--8989988-9-887999999998688899999998079966333144642


Q ss_pred             HHHHCCC-CC----------CCCCCCCCC----CCCCCEECCCC-EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEE
Q ss_conf             7875285-44----------667767521----01123477897-09996145761570343699828999988998087
Q gi|254780420|r  290 LGLALGA-QT----------VKMYQGHHG----VNHPVKNISNG-TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNC  353 (396)
Q Consensus       290 l~~a~G~-~~----------~kl~~GhrG----~N~Pv~~~~t~-kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tie  353 (396)
                      |+..... .+          .|..+|..-    .+.+..++... ..|..   |+|.+...  +.+-.++...-.++.+.
T Consensus        81 L~~~~e~g~~~gLGli~~~V~r~~~g~~~~~~~~~~~~~~~~~~~~~yFv---hs~~~~~~--~~~~~v~~~~~~~~~~v  155 (188)
T pfam01174        81 LSKQLGNELVKTLGLLKVTVKRNAFGRQVDSFEKECDFKNLIPKFPGVFI---RAPVIEEI--LDPEVVVVLYELDGKIV  155 (188)
T ss_pred             HHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCEECCC--CCCCEEEEEEECCCEEE
T ss_conf             11024778644246532268765767546554478633268999439998---17745104--99852999995799999


Q ss_pred             EEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             268679977898348788776700168999999999
Q gi|254780420|r  354 GFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFM  389 (396)
Q Consensus       354 gi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i  389 (396)
                      +++  ..++||+|||||=|.   |...+.+.|++-+
T Consensus       156 ~v~--~~Ni~g~QFHPEKS~---d~~~~~~~fl~~~  186 (188)
T pfam01174       156 VAK--QGNILATSFHPELAE---DDYRVHDWFVENF  186 (188)
T ss_pred             EEE--ECCEEEEECCCEECC---CCCHHHHHHHHHH
T ss_conf             999--899999951984579---9788999999996


No 78 
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.52  E-value=2.2e-13  Score=114.86  Aligned_cols=154  Identities=18%  Similarity=0.285  Sum_probs=88.7

Q ss_pred             HHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCC---CCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCC--
Q ss_conf             22222024541330465744644135788998588888410---1121101222102578634786100588787528--
Q gi|254780420|r  221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAV---TSVYSSPIICKLVDSGMPMFGICLGHQLLGLALG--  295 (396)
Q Consensus       221 r~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~---~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G--  295 (396)
                      +.|...|..+.++.-. +.++|.  +.|+++|-+|--....   ......+.+++.++.++|+||||+|+|+|+....  
T Consensus        21 kAl~~lg~~~e~~~v~-~p~~l~--~~d~LILPGG~f~~~m~~L~~~gl~~~i~~~i~~g~PiLGIClGmQLL~~~s~e~   97 (196)
T PRK13527         21 RALDELGINGEVVRVR-RPEDLK--DCDALIIPGGESTTIGRLMKRYGILDEIKEKIEEGLPILGTCAGLILLAKEVDDE   97 (196)
T ss_pred             HHHHHCCCCCEEEEEC-CHHHHH--CCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
T ss_conf             9999829990599969-989983--1997998996679999998886888999999976997799708799986631567


Q ss_pred             ----------CCCCCCCCCCCC--CCCCC--EECCCC-EEEEECCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf             ----------544667767521--01123--477897-099961457615703436998289999889980872686799
Q gi|254780420|r  296 ----------AQTVKMYQGHHG--VNHPV--KNISNG-TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ  360 (396)
Q Consensus       296 ----------~~~~kl~~GhrG--~N~Pv--~~~~t~-kv~iTsqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~  360 (396)
                                +++.|..||..=  ...|+  ..+... ..|..   |+|.++.  .+++.++++..  ++.+.+++  ..
T Consensus        98 ~~~~GLG~i~g~V~rn~~g~q~~s~~~~~~~~~~~~~~~~yFV---hs~~~~~--~~~~~~v~a~~--~~~~~aV~--k~  168 (196)
T PRK13527         98 VVQPLLGLMDVTVNRNAFGRQRDSFEAELDLEGLDGPFHAVFI---RAPAIDE--AGGDVEVLAKL--DDRIVAVE--QG  168 (196)
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEE---EEEEEEC--CCCCEEEEEEE--CCEEEEEE--EC
T ss_conf             7767767575489965788745555166441478999689999---7423502--79987999997--99999999--89


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             778983487887767001689999999999
Q gi|254780420|r  361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       361 ~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      ++|++|||||=|.   | ..+...|++++.
T Consensus       169 Ni~g~QFHPEkSg---d-~~i~~~Fl~~v~  194 (196)
T PRK13527        169 NVLATAFHPELTD---D-TRIHEYFLKKVV  194 (196)
T ss_pred             CEEEEECCCCCCC---C-CHHHHHHHHHHC
T ss_conf             9999955972238---7-559999999971


No 79 
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate.  This group contains proteins like Bacillus subtilus YaaE  and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.47  E-value=1e-12  Score=110.26  Aligned_cols=161  Identities=20%  Similarity=0.346  Sum_probs=89.2

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC----CCHHHHHHHCCCCCCEEEE
Q ss_conf             999967964102322222024541330465744644135788998588888410112----1101222102578634786
Q gi|254780420|r  208 VVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV----YSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       208 IvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~----~~~~~~~~~~~~~iPilGI  283 (396)
                      |+.|- |-=++.+|.|.+.|+++.++   .+.++|.+  .|+++|-.| |-.+....    ...+.+++....++|+|||
T Consensus         3 vl~lq-Gn~~s~~~Al~~lG~~~~~~---~~p~~i~~--ad~LILPGg-~s~~~~~~L~~~gl~~~i~~~i~~gkP~LGI   75 (183)
T cd01749           3 VLALQ-GDFREHIRALERLGVEVIEV---RTPEDLEG--IDGLIIPGG-ESTTIGKLLRRTGLLDPLREFIRAGKPVFGT   75 (183)
T ss_pred             EEEEC-CCHHHHHHHHHHCCCCEEEE---CCHHHHHH--CCEEEECCC-CHHHHHHHHHHCCCHHHHHHHHHCCCCEEEH
T ss_conf             99834-78999999999879979998---99999831--898998894-0899999998878889999999849984751


Q ss_pred             ECHHHHHHHHC--C----------CCCCCCCCCC-CC---CCCCCEECCCCEEEEECCCCCEEEEHHHCCCCCEEEEEEC
Q ss_conf             10058878752--8----------5446677675-21---0112347789709996145761570343699828999988
Q gi|254780420|r  284 CLGHQLLGLAL--G----------AQTVKMYQGH-HG---VNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISL  347 (396)
Q Consensus       284 ClGhQ~l~~a~--G----------~~~~kl~~Gh-rG---~N~Pv~~~~t~kv~iTsqNHg~~v~~~slp~~~~v~~~~~  347 (396)
                      |||+|+|+...  +          +++.|..||- .+   ...++.++.-+.++.. -.|+|.+..  ...+..++... 
T Consensus        76 ClGMQlL~~~s~E~g~~~GLGli~g~V~rn~~g~q~~sf~~~l~ip~~g~n~~~~~-Fv~sp~~~~--~~~~~~~~~~~-  151 (183)
T cd01749          76 CAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLGLGPFPAV-FIRAPVIEE--VGPGVEVLAEY-  151 (183)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE-EECCCEEEE--CCCCEEEEEEE-
T ss_conf             07788876523467886763655519963563676665525752786788876669-944864600--59980999998-


Q ss_pred             CCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             998087268679977898348788776700168999999
Q gi|254780420|r  348 FDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI  386 (396)
Q Consensus       348 nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~  386 (396)
                       ++.+.++  ...++|++|||||-|.   | ..+.++|+
T Consensus       152 -~~~~~aV--~~~Ni~g~QFHPEKSg---d-~~i~~~fl  183 (183)
T cd01749         152 -DGKIVAV--RQGNVLATSFHPELTD---D-TRIHEYFL  183 (183)
T ss_pred             -CCEEEEE--EECCEEEEECCCCCCC---C-CCHHHHHC
T ss_conf             -9999999--9899999947980159---8-64888639


No 80 
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=99.44  E-value=5.2e-13  Score=112.29  Aligned_cols=187  Identities=21%  Similarity=0.354  Sum_probs=124.9

Q ss_pred             CCCCCCCCEEEEEE----CC-CCCHHHHHHHHH----CCC--CEEEEC-CCCHH-------HHHH-----CCCCEEEECC
Q ss_conf             46777771499996----79-641023222220----245--413304-65744-------6441-----3578899858
Q gi|254780420|r  199 LKSSDAKYHVVCID----YG-IRSNLLRVLSSL----GCR--ITIVGA-ETSYK-------DIMS-----LQPDGVLLSN  254 (396)
Q Consensus       199 ~~~~~~~~kIvvID----fG-iK~nIlr~L~~~----g~~--v~Vvp~-~~~~~-------~i~~-----~~pdgi~lSn  254 (396)
                      ..++...-+|+++=    += .=.||...|.--    ++.  +.++.. |...+       ++++     ..-|||++-+
T Consensus       302 ~~~~~~~v~Ig~VGKY~eL~DaY~Sv~EAL~Hag~~~d~~v~i~Wi~s~d~e~~~~e~~k~~~l~~~~~~~~~DGILVPG  381 (571)
T TIGR00337       302 LINPKEEVTIGLVGKYVELKDAYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEEQEVDKAELLDGWNELSEVDGILVPG  381 (571)
T ss_pred             HHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             30552516798974002513567889999987677637425689862101320012001355532244543068068368


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCC-----CCCCCC---CEECCCCE-------
Q ss_conf             888841011211012221025786347861005887875285446677675-----210112---34778970-------
Q gi|254780420|r  255 GPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGH-----HGVNHP---VKNISNGT-------  319 (396)
Q Consensus       255 GPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~Gh-----rG~N~P---v~~~~t~k-------  319 (396)
                      |=|+=-.-.  -+.+++.+-+.+||.||||||+|+-..-|-=.+..|+-.|     .-..+|   |.++..-.       
T Consensus       382 GFG~RG~EG--KI~Ai~yAREN~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq~d~~~~~  459 (571)
T TIGR00337       382 GFGERGVEG--KIRAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPKSPVVDLLPEQKDQNGNK  459 (571)
T ss_pred             CCCCCCCHH--HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCE
T ss_conf             889766024--789999987636973302177788899997653479888741246455777331114253222446760


Q ss_pred             ---EEEEC-----------------------------------CCCCEEEEHHH---C-CCCCEEEEEECCCCEEEEEEE
Q ss_conf             ---99961-----------------------------------45761570343---6-998289999889980872686
Q gi|254780420|r  320 ---VEIVS-----------------------------------MNHGFAIDASS---L-PAGLEETHISLFDSSNCGFRL  357 (396)
Q Consensus       320 ---v~iTs-----------------------------------qNHg~~v~~~s---l-p~~~~v~~~~~nD~tiegi~~  357 (396)
                         .++..                                   +-|-|.|-++=   + ..+|.++..+.++.-+|-++.
T Consensus       460 ~VRt~~~~lGGTMRLG~ypc~l~~~~eWt~a~klYg~~~v~ERHRHRYE~Nn~~~~~~E~~GL~vsG~S~dg~l~EiiE~  539 (571)
T TIGR00337       460 EVRTEIEDLGGTMRLGLYPCILKPGSEWTLAFKLYGKEEVYERHRHRYEVNNEYREELENKGLIVSGTSPDGRLVEIIEL  539 (571)
T ss_pred             ECCEEECCCCCEEECCCCCEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEE
T ss_conf             01301013872430587221771787232675533786788712444122757898998579589998699838999984


Q ss_pred             CCCCEE-EECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             799778-983487887767001689999999
Q gi|254780420|r  358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       358 ~~~~~~-~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      ++.|+| ++|||||=.-=|.+.+.||.-|+.
T Consensus       540 ~~HP~FvA~QFHPEF~Srp~~p~plF~Gfv~  570 (571)
T TIGR00337       540 PDHPFFVACQFHPEFTSRPNRPHPLFLGFVK  570 (571)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCHHHHC
T ss_conf             7978688862267511677888875055324


No 81 
>KOG3179 consensus
Probab=99.23  E-value=3.4e-11  Score=99.47  Aligned_cols=136  Identities=23%  Similarity=0.279  Sum_probs=89.9

Q ss_pred             EEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC---CHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCC---C
Q ss_conf             3304657446441357889985888884101121---101222102578634786100588787528544667767---5
Q gi|254780420|r  232 IVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY---SSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQG---H  305 (396)
Q Consensus       232 Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~---~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~G---h  305 (396)
                      |+....+-++-+. +++|++||+-+-|-..-..-   ....++++...++||+|||+|||+||.|.|+++-+-+-|   -
T Consensus        46 V~~gefP~~~Dl~-ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~  124 (245)
T KOG3179          46 VIDGEFPQEEDLE-KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLG  124 (245)
T ss_pred             EECCCCCCHHHHH-HHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8548788744653-415499957743333540699999999999875156647882117999886178110278887444


Q ss_pred             CCCCCCCEECCCCEEEEE--------CCCCCEEEEHHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCC
Q ss_conf             210112347789709996--------1457615703436998289999889980872686799778983487887
Q gi|254780420|r  306 HGVNHPVKNISNGTVEIV--------SMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESS  372 (396)
Q Consensus       306 rG~N~Pv~~~~t~kv~iT--------sqNHg~~v~~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~  372 (396)
                      -|.---|++...+.-|.-        +|=|...|.+  +|++.++++.+- +--+|++. +...+++.|-|||=+
T Consensus       125 lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle--~PE~a~llasSe-~ceve~fs-~~~~~l~fQGHPEyn  195 (245)
T KOG3179         125 LGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE--LPEGAELLASSE-KCEVEMFS-IEDHLLCFQGHPEYN  195 (245)
T ss_pred             CCCEEEEEECCCCHHHCCCCHHHHHHHHHCCCCEEC--CCCHHHHHCCCC-CCCEEEEE-ECCEEEEECCCCHHH
T ss_conf             342389985246164326434442187653101433--774454300001-15257898-345379962882343


No 82 
>KOG2387 consensus
Probab=98.80  E-value=1.5e-08  Score=80.91  Aligned_cols=134  Identities=24%  Similarity=0.383  Sum_probs=81.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCC------CCCCCCCCCC-EECCCC
Q ss_conf             578899858888841011211012221025786347861005887875285446677------6752101123-477897
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMY------QGHHGVNHPV-KNISNG  318 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~------~GhrG~N~Pv-~~~~t~  318 (396)
                      ..|||++-+|=|+-....  .+...+..-+.++|.||||||+|+-..-|--.+.-|+      |--.. ++|| +.+..+
T Consensus       363 ~adGilvPGGFG~RGveG--~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~-~~~vVi~MPE~  439 (585)
T KOG2387         363 SADGILVPGGFGDRGVEG--KILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPET-KNPVVIFMPEH  439 (585)
T ss_pred             CCCEEEECCCCCCCCHHH--HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEECCCC
T ss_conf             488289678665443057--899999987649975763111269999999986177778732248788-98679987688


Q ss_pred             --------------EEEE-E-----------------CCCCCEEEEHHHC----CCCCEEEEEECCCCEEEEEEECCCCE
Q ss_conf             --------------0999-6-----------------1457615703436----99828999988998087268679977
Q gi|254780420|r  319 --------------TVEI-V-----------------SMNHGFAIDASSL----PAGLEETHISLFDSSNCGFRLIDQPV  362 (396)
Q Consensus       319 --------------kv~i-T-----------------sqNHg~~v~~~sl----p~~~~v~~~~~nD~tiegi~~~~~~~  362 (396)
                                    +.+. +                 -+-|-|.|.++-.    ..++.-...+..-.-.|-++.++.|+
T Consensus       440 ~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~  519 (585)
T KOG2387         440 NKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPF  519 (585)
T ss_pred             CCCCCCCEEEECCCCEEEECCCHHHHHHHCCCHHHHHHHHCCEECCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf             74444644662464116505715789875795046565411011488999999866968985168885788998079872


Q ss_pred             E-EECCCCCCCCCCCCHHHHH
Q ss_conf             8-9834878877670016899
Q gi|254780420|r  363 F-SVQYHPESSPGPQDSYYLF  382 (396)
Q Consensus       363 ~-~vQfHPEa~PGP~D~~~~F  382 (396)
                      | |+|||||=..-|...+-+|
T Consensus       520 fVg~QfHPE~~srp~kpsp~f  540 (585)
T KOG2387         520 FVGVQFHPEFKSRPDKPSPLF  540 (585)
T ss_pred             EEEECCCHHHHCCCCCCCCCH
T ss_conf             565313777745899999652


No 83 
>KOG1559 consensus
Probab=98.77  E-value=2.2e-08  Score=79.70  Aligned_cols=153  Identities=20%  Similarity=0.338  Sum_probs=88.9

Q ss_pred             CHHHHHHHHHCCCCEEEECCCCHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHHHH----CC----C-CCCEEEEEC
Q ss_conf             1023222220245413304657446441--35788998588888410112110122210----25----7-863478610
Q gi|254780420|r  217 SNLLRVLSSLGCRITIVGAETSYKDIMS--LQPDGVLLSNGPGDPAVTSVYSSPIICKL----VD----S-GMPMFGICL  285 (396)
Q Consensus       217 ~nIlr~L~~~g~~v~Vvp~~~~~~~i~~--~~pdgi~lSnGPGdP~~~~~~~~~~~~~~----~~----~-~iPilGICl  285 (396)
                      .+-++.+..-|++|+-+.+|-+-+....  .--.||++.+|  + +...++ .++++++    ++    + ..|+.||||
T Consensus        80 ASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGG--w-ak~~dY-~~vvkkifnk~le~nDaGehFPvyg~CL  155 (340)
T KOG1559          80 ASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGG--W-AKRGDY-FEVVKKIFNKVLERNDAGEHFPVYGICL  155 (340)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCEEEECCC--C-CCCCCH-HHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             88999987189558877548808999999987360574174--3-222409-9999999988876067866362124345


Q ss_pred             HHHHHHHHCC-C-CC-CC---------CCCCCCCC-------CCCCEECCC-CEEEEECCCCCEEEEHHHCCCC------
Q ss_conf             0588787528-5-44-66---------77675210-------112347789-7099961457615703436998------
Q gi|254780420|r  286 GHQLLGLALG-A-QT-VK---------MYQGHHGV-------NHPVKNISN-GTVEIVSMNHGFAIDASSLPAG------  339 (396)
Q Consensus       286 GhQ~l~~a~G-~-~~-~k---------l~~GhrG~-------N~Pv~~~~t-~kv~iTsqNHg~~v~~~slp~~------  339 (396)
                      |+.+|.+-.- . .+ ++         |.|--.+.       |.|-..+.. ..--.+.|||-|.+.+++...+      
T Consensus       156 GFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~F  235 (340)
T KOG1559         156 GFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSF  235 (340)
T ss_pred             HHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCCEEEHHHHHCCHHHHHHHCCCHHEEECCCCCCCHHHCCCCHHHHHH
T ss_conf             38999999855706877503202135302303554001157548999998735231100033234462304579889978


Q ss_pred             CEEEEEECCCCEE---EEEEECCCCEEEECCCCCCCC
Q ss_conf             2899998899808---726867997789834878877
Q gi|254780420|r  340 LEETHISLFDSSN---CGFRLIDQPVFSVQYHPESSP  373 (396)
Q Consensus       340 ~~v~~~~~nD~ti---egi~~~~~~~~~vQfHPEa~P  373 (396)
                      |.+.-.+..++++   --++.+.+|+.|+|||||-+|
T Consensus       236 FnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKna  272 (340)
T KOG1559         236 FNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNA  272 (340)
T ss_pred             HHHEEEECCCCCEEEEEEECCEECCCEEEEECCCCCC
T ss_conf             7653330179850798852030124100456675574


No 84 
>KOG0623 consensus
Probab=98.59  E-value=3.2e-07  Score=71.57  Aligned_cols=167  Identities=26%  Similarity=0.377  Sum_probs=96.8

Q ss_pred             EEEEECCCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCC-CCC----CCHHHHHHHCCCCCCE
Q ss_conf             999967964--102322222024541330465744644135788998588888410-112----1101222102578634
Q gi|254780420|r  208 VVCIDYGIR--SNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAV-TSV----YSSPIICKLVDSGMPM  280 (396)
Q Consensus       208 IvvIDfGiK--~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~-~~~----~~~~~~~~~~~~~iPi  280 (396)
                      |-+||+|.-  .+|-+.|+.+|+++..+..   ..+|++  .|-+++ +|-|+-.. ++.    ...+-+++.++...|+
T Consensus         4 v~~ld~~agn~~si~nal~hlg~~i~~v~~---P~DI~~--a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr~YiesgkPf   77 (541)
T KOG0623           4 VTLLDYGAGNVRSIRNALRHLGFSIKDVQT---PGDILN--ADRLIF-PGVGNFGPAMDVLNRTGFAEPLRKYIESGKPF   77 (541)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCEEEECCC---CHHHCC--CCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             799841786478899999863836554258---122036--743760-38664127888876432478999998669974


Q ss_pred             EEEECHHHHHHHHC-------CCCCC-----C-----CCCCCCCCCCC-C-------EECCCCEEEEECCCCCEEEEH--
Q ss_conf             78610058878752-------85446-----6-----77675210112-3-------477897099961457615703--
Q gi|254780420|r  281 FGICLGHQLLGLAL-------GAQTV-----K-----MYQGHHGVNHP-V-------KNISNGTVEIVSMNHGFAIDA--  333 (396)
Q Consensus       281 lGIClGhQ~l~~a~-------G~~~~-----k-----l~~GhrG~N~P-v-------~~~~t~kv~iTsqNHg~~v~~--  333 (396)
                      +|||+|.|+|--..       |..+.     +     -...|-|.|.- |       -+....++|+.   |+|...+  
T Consensus        78 mgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~~~YFV---HSyl~~ek~  154 (541)
T KOG0623          78 MGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFV---HSYLNREKP  154 (541)
T ss_pred             EEEHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---EEECCCCCC
T ss_conf             76314579986364437886764354440110357778577456311545775200256787349998---531133345


Q ss_pred             HHCC-CCCEEEEEECC-CCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4369-98289999889-980872686799778983487887767001689999999
Q gi|254780420|r  334 SSLP-AGLEETHISLF-DSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID  387 (396)
Q Consensus       334 ~slp-~~~~v~~~~~n-D~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~  387 (396)
                      .+|+ ++|++.-.+-- ..-|..|  ...+++++|||||-|.  .-+.....+|+.
T Consensus       155 ~~len~~wkiat~kYG~E~Fi~ai--~knN~~AtQFHPEKSG--~aGL~vl~~FL~  206 (541)
T KOG0623         155 KSLENKDWKIATCKYGSESFISAI--RKNNVHATQFHPEKSG--EAGLSVLRRFLH  206 (541)
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHH--HCCCEEEEECCCCCCC--CHHHHHHHHHHH
T ss_conf             678987736764046708899998--6076545752654455--011899999985


No 85 
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075   In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=98.43  E-value=3.4e-06  Score=64.27  Aligned_cols=180  Identities=27%  Similarity=0.338  Sum_probs=105.3

Q ss_pred             EEEEEECC---CCCHHHHHHH-HHCCCCEEE----ECC-CC-HHHH-HHCCCCEEEECCC--CCCC------CCC---CC
Q ss_conf             49999679---6410232222-202454133----046-57-4464-4135788998588--8884------101---12
Q gi|254780420|r  207 HVVCIDYG---IRSNLLRVLS-SLGCRITIV----GAE-TS-YKDI-MSLQPDGVLLSNG--PGDP------AVT---SV  264 (396)
Q Consensus       207 kIvvIDfG---iK~nIlr~L~-~~g~~v~Vv----p~~-~~-~~~i-~~~~pdgi~lSnG--PGdP------~~~---~~  264 (396)
                      |||||=|.   -=+-.++.|. ..|.+..+|    =|+ ++ +++- --.++|+|+|-.|  -||-      ++.   + 
T Consensus         2 kvAV~~FPGtNCd~D~~~A~~k~~Gv~~~~Vhikqw~~D~~r~~~~rsvfD~D~VvlPGGFSyGDYLRaGAIAa~rvk~-   80 (264)
T TIGR01737         2 KVAVIRFPGTNCDRDTVYALEKLLGVDAEIVHIKQWYEDKSRLSDQRSVFDYDAVVLPGGFSYGDYLRAGAIAALRVKS-   80 (264)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCH-
T ss_conf             6899977999840899999997149983799865210000478766417873348866877723577799999875030-


Q ss_pred             CCHHHHHHHCCCCCCEEEEECHHHHHHHHC---C-------------CCCC--CCCCCCCCCCCCCE--------ECCCC
Q ss_conf             110122210257863478610058878752---8-------------5446--67767521011234--------77897
Q gi|254780420|r  265 YSSPIICKLVDSGMPMFGICLGHQLLGLAL---G-------------AQTV--KMYQGHHGVNHPVK--------NISNG  318 (396)
Q Consensus       265 ~~~~~~~~~~~~~iPilGIClGhQ~l~~a~---G-------------~~~~--kl~~GhrG~N~Pv~--------~~~t~  318 (396)
                      .+...++++.+.+.||||||=|+|+|.-+=   |             |=+.  .++|==|=.+--|.        .+..|
T Consensus        81 p~~~~V~~~A~~G~pVLGiCNGFQIL~E~GLLpGfDeDkPlaekPemAL~~N~~~rFisr~v~LrV~n~~T~FT~~y~kG  160 (264)
T TIGR01737        81 PIMQEVREFAEKGKPVLGICNGFQILVEAGLLPGFDEDKPLAEKPEMALLPNASLRFISRWVYLRVENADTAFTKKYKKG  160 (264)
T ss_pred             HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCHHHHCCCCC
T ss_conf             88999999995598289976647999997624898878874357122442058897453203689985678366357988


Q ss_pred             EEEEECCCCC---EEEE----HHHC---CC-CCEEE-E----------EECCCCE---EEEEEECCCCEEEECCCCCCC-
Q ss_conf             0999614576---1570----3436---99-82899-9----------9889980---872686799778983487887-
Q gi|254780420|r  319 TVEIVSMNHG---FAID----ASSL---PA-GLEET-H----------ISLFDSS---NCGFRLIDQPVFSVQYHPESS-  372 (396)
Q Consensus       319 kv~iTsqNHg---~~v~----~~sl---p~-~~~v~-~----------~~~nD~t---iegi~~~~~~~~~vQfHPEa~-  372 (396)
                      .|-.--==||   |-++    .+++   .+ +-.|. |          .|.| ||   |+||..++.+++|..=|||=+ 
T Consensus       161 ev~~~PiAHgEGrYy~~sGke~e~~~~l~~n~qivFrY~d~~G~~~e~~NPN-GS~~nIAGi~N~~gnV~GmMPHPERA~  239 (264)
T TIGR01737       161 EVIRVPIAHGEGRYYADSGKEDETLAELESNDQIVFRYCDEDGDVSEEVNPN-GSVDNIAGIVNEEGNVLGMMPHPERAS  239 (264)
T ss_pred             CEEEEEEEECCCCEECCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCCCC-CCCCCEEEEECCCCCEEEECCCHHHHH
T ss_conf             7887654425872662689975799998547918999767998532454789-764671057808987787189807876


Q ss_pred             --------CCCCCHHHHHHHHHHH
Q ss_conf             --------7670016899999999
Q gi|254780420|r  373 --------PGPQDSYYLFSTFIDF  388 (396)
Q Consensus       373 --------PGP~D~~~~F~~F~~~  388 (396)
                              -|-+|+..||.-|++-
T Consensus       240 ~~~lg~r~eG~~DG~~Lf~~l~~~  263 (264)
T TIGR01737       240 EKLLGSRREGADDGLKLFESLVEW  263 (264)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             454068875637799999999971


No 86 
>PRK01175 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=98.40  E-value=7.8e-06  Score=61.78  Aligned_cols=186  Identities=18%  Similarity=0.246  Sum_probs=99.3

Q ss_pred             CCEEEEEEC-CC--CCHHHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEECCCC--CCCCCCCCC--------CHHHH
Q ss_conf             714999967-96--410232222202454133046-57446441357889985888--884101121--------10122
Q gi|254780420|r  205 KYHVVCIDY-GI--RSNLLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLSNGP--GDPAVTSVY--------SSPII  270 (396)
Q Consensus       205 ~~kIvvIDf-Gi--K~nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lSnGP--GdP~~~~~~--------~~~~~  270 (396)
                      ++||++|-| |+  -+-..+.+.+.|+++..|-.+ .-..+-.-.++|+|+|-.|=  ||--.....        ..+.+
T Consensus         3 ~PkvaIl~fpGsNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lv~pGGFSyGD~l~aG~~~a~~~~~~~~~~i   82 (255)
T PRK01175          3 SPKVGVLRMEGTNNETEVFKSVRRSGGEPEYVHINDLAAGRKSVSDYDCLIIPGGFSAGDYIRAGAIFAARLKAVLGKDI   82 (255)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98699996586481999999999859963899865233676665555489973776764335751889998679999999


Q ss_pred             HHHCCCCCCEEEEECHHHHHHHHC---CCCCC-CCC------CCCCCCC------CCC--EECCCCEEEE-ECCCCC-EE
Q ss_conf             210257863478610058878752---85446-677------6752101------123--4778970999-614576-15
Q gi|254780420|r  271 CKLVDSGMPMFGICLGHQLLGLAL---GAQTV-KMY------QGHHGVN------HPV--KNISNGTVEI-VSMNHG-FA  330 (396)
Q Consensus       271 ~~~~~~~iPilGIClGhQ~l~~a~---G~~~~-kl~------~GhrG~N------~Pv--~~~~t~kv~i-TsqNHg-~~  330 (396)
                      +++.+.+.||||||=|+|+|..+-   |++-. .|.      |--|=++      .++  +.+..+.+.| .++.-| |.
T Consensus        83 ~~f~~~g~~vLGICNGfQiL~e~gLLPg~~~~~~L~~N~s~rF~~r~v~l~v~~~~~~f~~~~~~~~l~ipvAHgEGrf~  162 (255)
T PRK01175         83 REFIDSGRPIIGICNGFQVLMELGLIPAERPEIALTNNESNRFECRYTYIKMTSEKCIFVKNLGKGVFQVPVAHAEGRVA  162 (255)
T ss_pred             HHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHCCCCCEEEEEEECCCCCEE
T ss_conf             99996799679980168999975877899988020247999878678799994483466641489779987553768557


Q ss_pred             E-EHHHC----CCCCEE-EEEE-----------CCCC---EEEEEEECCCCEEEECCCCCCC------------CCCCCH
Q ss_conf             7-03436----998289-9998-----------8998---0872686799778983487887------------767001
Q gi|254780420|r  331 I-DASSL----PAGLEE-THIS-----------LFDS---SNCGFRLIDQPVFSVQYHPESS------------PGPQDS  378 (396)
Q Consensus       331 v-~~~sl----p~~~~v-~~~~-----------~nD~---tiegi~~~~~~~~~vQfHPEa~------------PGP~D~  378 (396)
                      + +.+.|    ..+..+ .|.+           .| |   .|+||..++..+++..=|||-+            .|.-|.
T Consensus       163 ~~~~~~l~~l~~n~qi~~rY~d~~G~~~~yp~NPN-GS~~~IAGI~n~~GrvlgmMPHPER~~~~~q~~~~~~~~~~g~g  241 (255)
T PRK01175        163 VSEDSVLKRLYENDQIVFRYVDENGVYDGYPWNPN-GSIDNIAGITNETGNVIGLMPHPERIYYGYQAMYNERRKDYGTG  241 (255)
T ss_pred             ECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC-CCHHHHCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             58989999998589658999669986457888998-79767208678999998878996325646558878666777869


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             6899999999997
Q gi|254780420|r  379 YYLFSTFIDFMHK  391 (396)
Q Consensus       379 ~~~F~~F~~~i~~  391 (396)
                      ..+|.+.++-+++
T Consensus       242 ~~~F~nav~~~k~  254 (255)
T PRK01175        242 KIFFRSLVNYLEK  254 (255)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999964


No 87 
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.36  E-value=2e-05  Score=58.92  Aligned_cols=177  Identities=24%  Similarity=0.299  Sum_probs=99.2

Q ss_pred             CCEEEEEECCCCCH---HHHHHHHHCCCCEEEECCCCHHHHHHC-CCCEEEECCCC--CCCCCCC-----CCCHHHHHHH
Q ss_conf             71499996796410---232222202454133046574464413-57889985888--8841011-----2110122210
Q gi|254780420|r  205 KYHVVCIDYGIRSN---LLRVLSSLGCRITIVGAETSYKDIMSL-QPDGVLLSNGP--GDPAVTS-----VYSSPIICKL  273 (396)
Q Consensus       205 ~~kIvvIDfGiK~n---Ilr~L~~~g~~v~Vvp~~~~~~~i~~~-~pdgi~lSnGP--GdP~~~~-----~~~~~~~~~~  273 (396)
                      +.||++|=|-=-+.   ..+.+...|+++..|-++    |.... ++|+|++-.|=  ||--.+.     ..+.+.++++
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~----d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~   77 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHS----DLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF   77 (231)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEE----ECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             95699997078684599999999849982499855----03567774689974887764335732677557899999999


Q ss_pred             CCCCCCEEEEECHHHHHHHHC---CCCCC--CCCCCCCCCCCCCEECCCC----------EEEEECCCCC---EEEEHHH
Q ss_conf             257863478610058878752---85446--6776752101123477897----------0999614576---1570343
Q gi|254780420|r  274 VDSGMPMFGICLGHQLLGLAL---GAQTV--KMYQGHHGVNHPVKNISNG----------TVEIVSMNHG---FAIDASS  335 (396)
Q Consensus       274 ~~~~iPilGIClGhQ~l~~a~---G~~~~--kl~~GhrG~N~Pv~~~~t~----------kv~iTsqNHg---~~v~~~s  335 (396)
                      .+...|+||||=|+|+|.++-   |+=+.  .++|--|=.  .++-..+.          .+.--.--||   |.++.+.
T Consensus        78 a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v--~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~  155 (231)
T COG0047          78 AEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWV--YLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDET  155 (231)
T ss_pred             HHCCCEEEEECCHHHHHHHCCCCCCCEECCCCCCEEEEEE--EEEEECCCCHHHHHCCCCCEEEEEEEECCEEEECCHHH
T ss_conf             8689719998535089897275776102478984588989--99993589877873578855987777056247716788


Q ss_pred             C---CC-CCEEE-EE----------ECCCCE---EEEEEECCCCEEEECCCCCCC----CCCCCHHHHHHHHHHH
Q ss_conf             6---99-82899-99----------889980---872686799778983487887----7670016899999999
Q gi|254780420|r  336 L---PA-GLEET-HI----------SLFDSS---NCGFRLIDQPVFSVQYHPESS----PGPQDSYYLFSTFIDF  388 (396)
Q Consensus       336 l---p~-~~~v~-~~----------~~nD~t---iegi~~~~~~~~~vQfHPEa~----PGP~D~~~~F~~F~~~  388 (396)
                      |   .. +..+. |.          |.| ||   |+||..++-.+++..=|||-.    .|-.|...||...++-
T Consensus       156 l~~l~~ngqvvfrY~d~~G~~~~~~NPN-GS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~  229 (231)
T COG0047         156 LAELEENGQVVFRYVDNNGETEEYANPN-GSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSARKY  229 (231)
T ss_pred             HHHHHHCCEEEEEEECCCCCEEEEECCC-CCHHHCEEEECCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             9987548979999936998540334798-9966620577699978986489444332026871389999999986


No 88 
>PRK03619 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=98.30  E-value=2.4e-05  Score=58.28  Aligned_cols=121  Identities=24%  Similarity=0.372  Sum_probs=71.1

Q ss_pred             CHHHHHHHCCCCCCEEEEECHHHHHHHHCCC---CCCC---CCCCCCCC-------CCCC-EECCCCE---EEEECCCCC
Q ss_conf             1012221025786347861005887875285---4466---77675210-------1123-4778970---999614576
Q gi|254780420|r  266 SSPIICKLVDSGMPMFGICLGHQLLGLALGA---QTVK---MYQGHHGV-------NHPV-KNISNGT---VEIVSMNHG  328 (396)
Q Consensus       266 ~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~---~~~k---l~~GhrG~-------N~Pv-~~~~t~k---v~iTsqNHg  328 (396)
                      +.+.++++.+.+.|+||||=|+|+|..+ |.   ...+   .+|--|=.       |-|- +++..+.   ++|.   ||
T Consensus        67 i~~~i~~f~~~g~~vLGICNGfQiL~e~-gLlPgaL~~N~s~rF~~r~v~lkv~~~~s~f~~~~~~g~~l~ipVA---Hg  142 (223)
T PRK03619         67 VMQAVVEAAEKGKPVLGICNGFQILLEA-GLLPGALTRNENLKFICRDVKLRVENNDTAFTSRYEKGEVIRIPIA---HG  142 (223)
T ss_pred             HHHHHHHHHHCCCCEEEECHHHHHHHHC-CCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHCCCCCCCEEEEEEE---CC
T ss_conf             9999999986799779987278989864-7788621026999879865678865898401037899988988724---48


Q ss_pred             ---EEEEHHHCC----CCCEEEEE----ECCCCE---EEEEEECCCCEEEECCCCCCCC----CCCCHHHHHHHHHHHHH
Q ss_conf             ---157034369----98289999----889980---8726867997789834878877----67001689999999999
Q gi|254780420|r  329 ---FAIDASSLP----AGLEETHI----SLFDSS---NCGFRLIDQPVFSVQYHPESSP----GPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       329 ---~~v~~~slp----~~~~v~~~----~~nD~t---iegi~~~~~~~~~vQfHPEa~P----GP~D~~~~F~~F~~~i~  390 (396)
                         |..+++.|.    .+..+..+    |.| ||   |+||..++..+++..=|||-+-    |..|+..+|...++-.+
T Consensus       143 EGr~~~~~~~l~~l~~~~qi~~~Y~d~~NPN-GS~~~IAGI~~~~GrvlgmMPHPERa~~~~~g~~dG~~~f~s~v~~~~  221 (223)
T PRK03619        143 EGNYYADEETLKELEGNGQVVFRYVDETNPN-GSVNDIAGICNENGNVLGLMPHPERAVEALLGSDDGLKLFKSALDAWR  221 (223)
T ss_pred             CCCEECCHHHHHHHHHCCCEEEEECCCCCCC-CCHHHHHEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             7533559999999997897899989999998-896465285879999988889964463554478614999999999975


Q ss_pred             H
Q ss_conf             7
Q gi|254780420|r  391 K  391 (396)
Q Consensus       391 ~  391 (396)
                      +
T Consensus       222 ~  222 (223)
T PRK03619        222 E  222 (223)
T ss_pred             H
T ss_conf             1


No 89 
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.22  E-value=5.2e-05  Score=55.97  Aligned_cols=164  Identities=23%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCC-HHHHHHCCCCEEEECCC--CCCCC------CCCCCCHHHHHHHCCCCCCEEEEECHHH
Q ss_conf             023222220245413304657-44644135788998588--88841------0112110122210257863478610058
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETS-YKDIMSLQPDGVLLSNG--PGDPA------VTSVYSSPIICKLVDSGMPMFGICLGHQ  288 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~-~~~i~~~~pdgi~lSnG--PGdP~------~~~~~~~~~~~~~~~~~iPilGIClGhQ  288 (396)
                      -..+.|...|+++..|-.+-- .....-.++|+|++.+|  -||--      .......+.++.+.+...|+||||=|+|
T Consensus        14 e~~~Af~~aG~~~~~V~~~dl~~~~~~L~~~~~lv~pGGFSyGD~l~ag~~~a~s~~~~~~l~~f~~~g~~vLGICNGfQ   93 (238)
T cd01740          14 DMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQ   93 (238)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEECHHHH
T ss_conf             99999998699269998101656646611075899868667766655567887481130899997548974898530567


Q ss_pred             HHHHHC---CCCCC--CCCCCCCCCC--CCCEECCC----------CE---EEEECCCCC---EEEEHHHC----CCCCE
Q ss_conf             878752---85446--6776752101--12347789----------70---999614576---15703436----99828
Q gi|254780420|r  289 LLGLAL---GAQTV--KMYQGHHGVN--HPVKNISN----------GT---VEIVSMNHG---FAIDASSL----PAGLE  341 (396)
Q Consensus       289 ~l~~a~---G~~~~--kl~~GhrG~N--~Pv~~~~t----------~k---v~iTsqNHg---~~v~~~sl----p~~~~  341 (396)
                      +|...-   |+...  ++.|--|-.+  ..++-..+          +.   ++|.   ||   |..+.+++    ..+..
T Consensus        94 iL~~lGllpg~~~~n~~~~~~~~~~~r~v~l~v~~~~s~f~~~~~~g~~l~ipva---HgEGr~~~~~~~l~~l~~~~~i  170 (238)
T cd01740          94 ILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVA---HGEGRFYADDETLAELEENGQI  170 (238)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHCCCCCCEEEEEEE---CCCEEEECCHHHHHHHHHCCCE
T ss_conf             8887067785001487765467560057999978999867716578988888875---3723597182878999867956


Q ss_pred             EEE------------EECC--CCEEEEEEECCCCEEEECCCCCCC---------CCCCCHHHHHHH
Q ss_conf             999------------9889--980872686799778983487887---------767001689999
Q gi|254780420|r  342 ETH------------ISLF--DSSNCGFRLIDQPVFSVQYHPESS---------PGPQDSYYLFST  384 (396)
Q Consensus       342 v~~------------~~~n--D~tiegi~~~~~~~~~vQfHPEa~---------PGP~D~~~~F~~  384 (396)
                      +.+            .|.|  ...|+||..++-.+++..-|||-+         ||..|...+|++
T Consensus       171 ~~~~~~~~~~~~~yP~NPNGS~~~IAGI~s~~GrvlgmMPHPER~~~~~q~~~~~~~~~g~~~F~n  236 (238)
T cd01740         171 AQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRN  236 (238)
T ss_pred             EEEEECCCCCCCCCCCCCCCCHHCEEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             999957998022688899888202127887999999974785773065556567889818999975


No 90 
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.04  E-value=1.5e-05  Score=59.81  Aligned_cols=153  Identities=18%  Similarity=0.261  Sum_probs=83.8

Q ss_pred             EEEEEEC-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCCE
Q ss_conf             4999967-964102322222024541330465744644135788998588888410112-----1101222102578634
Q gi|254780420|r  207 HVVCIDY-GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMPM  280 (396)
Q Consensus       207 kIvvIDf-GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iPi  280 (396)
                      ||-|+-+ |.=.-=++.|.+.|+++..|...   +++..  -||++|-+|-..  ....     ...+.++++..+ .||
T Consensus         4 kIGVLaLQG~~~eH~~~l~~lg~~~~~Vr~~---~dL~~--idgLIiPGGEST--ti~~ll~~~~L~~~l~~~~~~-~Pv   75 (179)
T PRK13526          4 KVGVLAIQGGYQKHADMFKSLGVEVKLVKFN---NDFDS--IDRLVIPGGEST--TLLNLLNKHQIFDKLYNFCSS-KPV   75 (179)
T ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEECCH---HHHHC--CCEEEECCCCHH--HHHHHHHHCCCHHHHHHHHHC-CCE
T ss_conf             8999996288799999999879968997178---88600--775897599778--999997675549999999858-990


Q ss_pred             EEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEHH-----------------HCCCCCEEE
Q ss_conf             786100588787528544667767521011234778970999614576157034-----------------369982899
Q gi|254780420|r  281 FGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDAS-----------------SLPAGLEET  343 (396)
Q Consensus       281 lGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~~~-----------------slp~~~~v~  343 (396)
                      ||.|-|.-+||.  |-+       +-|    +.|+.-.|-.+-.|..+|..+-+                 ++.++.+|.
T Consensus        76 ~GTCAGlILLak--~~~-------~lg----~ldi~V~RNayGrQ~~SFe~~~~~~~~~~~avFIRAP~I~~vg~~V~vL  142 (179)
T PRK13526         76 FGTCAGSIILSK--GEG-------YLN----LLDLEVQRNAYGRQVDSFVADISFNDKNITGVFIRAPKFIVVGNQVDIL  142 (179)
T ss_pred             EEECCEEEEEEC--CCC-------CCC----CEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCEEECCCCCEEE
T ss_conf             886120689826--987-------667----1358998255457432058713658995369998275188808995899


Q ss_pred             EEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             998899808726867997789834878877670016899999999
Q gi|254780420|r  344 HISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       344 ~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~  388 (396)
                      +.-  |+.+-+  -+..++++.-||||-+.   |+ .+-.-|++|
T Consensus       143 a~~--~~~~V~--vrqgn~la~sFHPELt~---D~-r~H~yFl~m  179 (179)
T PRK13526        143 SKY--QNSPVL--LRQANILVSSFHPELTQ---DP-TVHEYFLAM  179 (179)
T ss_pred             EEE--CCEEEE--EEECCEEEEEECCCCCC---CC-HHHHHHHCC
T ss_conf             998--998899--99899999982887548---77-799997429


No 91 
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.94  E-value=0.00033  Score=50.36  Aligned_cols=88  Identities=18%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             CCCCCEEEEE-----ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC------CCHHHH
Q ss_conf             7777149999-----67964102322222024541330465744644135788998588888410112------110122
Q gi|254780420|r  202 SDAKYHVVCI-----DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV------YSSPII  270 (396)
Q Consensus       202 ~~~~~kIvvI-----DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~------~~~~~~  270 (396)
                      ...+.+|++-     .|-...| ++.|.+.|++++-+..-  .++-+-.+.|+|+|-.|.  |+....      ...+.+
T Consensus       242 ~~~~~rIava~D~AF~FyY~en-l~~L~~~Gael~~fSPl--~d~~lP~~~D~l~lpGGy--PEl~a~~L~~n~~l~~~I  316 (451)
T PRK01077        242 PPPGVRIAVARDAAFSFYYPDN-LELLRAAGAELVFFSPL--ADEALPDDCDALYLGGGY--PELFAAELAANTSMRASI  316 (451)
T ss_pred             CCCCCEEEEECCCCCCCCCHHH-HHHHHHCCCEEEEECCC--CCCCCCCCCCEEEECCCC--HHHHHHHHHHHHHHHHHH
T ss_conf             6789769994342247557667-99999789889995776--788898667889957985--024399998708999999


Q ss_pred             HHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             210257863478610058878752
Q gi|254780420|r  271 CKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       271 ~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      ++..+.+.||+|||=|.|.|+...
T Consensus       317 ~~~~~~G~pi~aeCGG~~~Lg~~i  340 (451)
T PRK01077        317 RAAAAAGKPIYAECGGLMYLGESL  340 (451)
T ss_pred             HHHHHCCCCEEEECHHHHHHHHHC
T ss_conf             999986997899871178875432


No 92 
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad .    This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)).   The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=97.93  E-value=7.5e-06  Score=61.87  Aligned_cols=97  Identities=20%  Similarity=0.323  Sum_probs=71.4

Q ss_pred             CEEEEEE-CCCCCHHHH-----------HHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCC--CCCCCHHHHH
Q ss_conf             1499996-796410232-----------2222024541330465744644135788998588888410--1121101222
Q gi|254780420|r  206 YHVVCID-YGIRSNLLR-----------VLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAV--TSVYSSPIIC  271 (396)
Q Consensus       206 ~kIvvID-fGiK~nIlr-----------~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~--~~~~~~~~~~  271 (396)
                      ++|-++- -+-|.+++.           +=.+.|..|+|   |.++++|...+||+|+|.+|-++|..  .+.....++|
T Consensus        27 ~~V~~v~~g~~~g~~v~~aihdfeGdqty~~~~g~~v~v---d~~~~~v~~~~YDal~ipGG~a~~e~LR~d~~~~~lvR  103 (189)
T TIGR01382        27 HEVTVVSIGKEAGTIVGDAIHDFEGDQTYTEKHGYSVTV---DATIDDVDPEDYDALVIPGGRASPEYLRLDEKVIRLVR  103 (189)
T ss_pred             CEEEEEEECCEECCEEECEEECCCCCCCCCCCCCEEEEE---ECCEECCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             889898316500232201101156763213478816887---44121478525647897177356000148768999999


Q ss_pred             HHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             1025786347861005887875285446677675210112
Q gi|254780420|r  272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHP  311 (396)
Q Consensus       272 ~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~P  311 (396)
                      ++.+.++||..||.|-|+|+.|-   +.|   ||+..-.|
T Consensus       104 ~f~e~gK~vaaIChgp~lLi~A~---Vlr---Gkk~T~y~  137 (189)
T TIGR01382       104 EFVEKGKPVAAICHGPQLLISAG---VLR---GKKLTAYP  137 (189)
T ss_pred             HHHHCCCEEEEEECCCEEEEECC---EEC---CCEEEECC
T ss_conf             98417881999845300000255---103---75375339


No 93 
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ).  CobQ plays a role in cobalamin biosythesis.   CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin.  CobQ belongs to the triad family of amidotransferases.  Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.91  E-value=0.00018  Score=52.09  Aligned_cols=66  Identities=26%  Similarity=0.429  Sum_probs=42.1

Q ss_pred             HHHH-HHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-------CHHHHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             2222-20245413304657446441357889985888884101121-------101222102578634786100588787
Q gi|254780420|r  221 RVLS-SLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-------SSPIICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       221 r~L~-~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-------~~~~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      +.|. +.++++.++...   +++  .+||.|||   ||......+.       ..+.+++..+.+.||||||-|.|+|+.
T Consensus        16 ~~l~~~~~v~v~~v~~~---~~l--~~~D~iIl---PGsK~t~~DL~~l~~~Gl~~~i~~~~~~g~~vlgICGGyQmLG~   87 (194)
T cd01750          16 DPLAREPGVDVRYVEVP---EGL--GDADLIIL---PGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGK   87 (194)
T ss_pred             HHHHCCCCCEEEEECCC---CCC--CCCCEEEE---CCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf             77600699389996797---764--66999998---99883899999998749799999999759978997365673000


Q ss_pred             HC
Q ss_conf             52
Q gi|254780420|r  293 AL  294 (396)
Q Consensus       293 a~  294 (396)
                      .+
T Consensus        88 ~i   89 (194)
T cd01750          88 YI   89 (194)
T ss_pred             EE
T ss_conf             35


No 94 
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain.  The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.  For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site.  Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.45  E-value=0.00012  Score=53.39  Aligned_cols=73  Identities=30%  Similarity=0.542  Sum_probs=50.2

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHH--HHHHCCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             02322222024541330465744--64413578899858888841011--211012221025786347861005887
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYK--DIMSLQPDGVLLSNGPGDPAVTS--VYSSPIICKLVDSGMPMFGICLGHQLL  290 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~--~i~~~~pdgi~lSnGPGdP~~~~--~~~~~~~~~~~~~~iPilGIClGhQ~l  290 (396)
                      .....|.+.+..+.+++......  .....++|+|++.+|+..+....  ......+++....+.|++|+|.|+|++
T Consensus        16 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf             99999997799799996589986665762008999989986329998639999999999998699899988588999


No 95 
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=97.43  E-value=0.0033  Score=43.27  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=89.0

Q ss_pred             CCHHHHHHCCCCEEEECCCCCCCCCCCC----C---CHHHHHHHCCCCCCEEEEECHHHHHH-HHCCCCCCCCC------
Q ss_conf             5744644135788998588888410112----1---10122210257863478610058878-75285446677------
Q gi|254780420|r  237 TSYKDIMSLQPDGVLLSNGPGDPAVTSV----Y---SSPIICKLVDSGMPMFGICLGHQLLG-LALGAQTVKMY------  302 (396)
Q Consensus       237 ~~~~~i~~~~pdgi~lSnGPGdP~~~~~----~---~~~~~~~~~~~~iPilGIClGhQ~l~-~a~G~~~~kl~------  302 (396)
                      .++++|...++||+++.+-|  ++..+-    +   ..+++..........|.||+|.|+.. ..+|-+-+.|+      
T Consensus        90 ~~f~~ik~~~~DGlIITGAP--vE~l~Fe~V~YW~El~~I~dws~~~v~stl~iCWaA~AaL~~~ygI~K~~l~~K~fGV  167 (302)
T PRK05368         90 RTFEDIKDQKFDGLIVTGAP--VELLPFEDVDYWDELREILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGV  167 (302)
T ss_pred             HHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCEECCCCEEEE
T ss_conf             64999965877669972898--7778855374199999999999862652256749999999997099710068735875


Q ss_pred             CCCCCC--CCCCEECCCCEEEEECCCCCEEEEHHHCC--CCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCH
Q ss_conf             675210--11234778970999614576157034369--98289999889980872686799778983487887767001
Q gi|254780420|r  303 QGHHGV--NHPVKNISNGTVEIVSMNHGFAIDASSLP--AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDS  378 (396)
Q Consensus       303 ~GhrG~--N~Pv~~~~t~kv~iTsqNHg~~v~~~slp--~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~  378 (396)
                      |.|+-.  +||...--+. .+..-|..--.|+++.+.  .+++|...+...|.. -+..++....=+|-|||=     |+
T Consensus       168 f~h~~~~~~~pL~rGfdd-~f~~PhSR~tei~~~~i~~~~~L~ILa~s~e~G~~-l~~s~~~r~vfi~GH~EY-----d~  240 (302)
T PRK05368        168 FEHRVLVPHHPLLRGFDD-SFLVPHSRYTEVREEDIRAATGLEILAESEEAGVY-LFASKDKRIVFVTGHPEY-----DA  240 (302)
T ss_pred             ECCCCCCCCCHHHCCCCC-CCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCE-EEECCCCCEEEEECCCCC-----CH
T ss_conf             122346899800137876-53067412236899999508896798636777716-998289886888278666-----75


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             689999999999735
Q gi|254780420|r  379 YYLFSTFIDFMHKRK  393 (396)
Q Consensus       379 ~~~F~~F~~~i~~~k  393 (396)
                      .-|-+++..-+.+..
T Consensus       241 ~TL~~EY~RD~~~g~  255 (302)
T PRK05368        241 DTLAREYFRDLGRGL  255 (302)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             489999999997699


No 96 
>pfam04204 HTS Homoserine O-succinyltransferase.
Probab=97.32  E-value=0.0067  Score=41.11  Aligned_cols=148  Identities=18%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             CCHHHHHHCCCCEEEECCCCCCCCCCCC----C---CHHHHHHHCCCCCCEEEEECHHHH-HHHHCCCCCCCCC------
Q ss_conf             5744644135788998588888410112----1---101222102578634786100588-7875285446677------
Q gi|254780420|r  237 TSYKDIMSLQPDGVLLSNGPGDPAVTSV----Y---SSPIICKLVDSGMPMFGICLGHQL-LGLALGAQTVKMY------  302 (396)
Q Consensus       237 ~~~~~i~~~~pdgi~lSnGPGdP~~~~~----~---~~~~~~~~~~~~iPilGIClGhQ~-l~~a~G~~~~kl~------  302 (396)
                      .++++|...++||+++.+-|=  +..+-    +   ..+++..........|.||+|.|+ |-..+|-+-..++      
T Consensus        89 ~~f~~ik~~~~DGlIITGAPv--E~l~FeeV~YW~El~~I~dWs~~~v~Stl~iCWaAqAaL~~~ygI~K~~l~~KlfGV  166 (298)
T pfam04204        89 RTFDEIKDEKFDGLIITGAPV--EHLPFEDVDYWEELTEIMDWSKTNVTSTLHICWGAQAALYHFYGIPKHLLPEKLFGV  166 (298)
T ss_pred             HHHHHHHHCCCCEEEECCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             719999658875699728987--778855374199999999999862544045749999999998199800178745885


Q ss_pred             CCCCCC--CCCCEECCCCEEEEECCCCCEEEEHHHC--CCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCH
Q ss_conf             675210--1123477897099961457615703436--998289999889980872686799778983487887767001
Q gi|254780420|r  303 QGHHGV--NHPVKNISNGTVEIVSMNHGFAIDASSL--PAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDS  378 (396)
Q Consensus       303 ~GhrG~--N~Pv~~~~t~kv~iTsqNHg~~v~~~sl--p~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~  378 (396)
                      |.|+-.  +||...--+.. +..-|..--.|+.+.+  ..+|+|...+...|... +..++....=+|-|||=     |+
T Consensus       167 f~h~~~~~~~pLlrGfdd~-f~~PhSR~t~i~~~~i~~~~~L~iLa~s~~~G~~l-~~~~d~r~vf~~GH~EY-----d~  239 (298)
T pfam04204       167 FRHRVLDPHSPLLRGFDDE-FYAPHSRHTEVRREDIEAVPGLEILAESEEAGVYL-VASKDGRQVFVTGHPEY-----DA  239 (298)
T ss_pred             ECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEE-EECCCCCEEEEECCCCC-----CH
T ss_conf             1234578998010478765-30674233469988971378847986778776179-98289886888278666-----75


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             689999999999735
Q gi|254780420|r  379 YYLFSTFIDFMHKRK  393 (396)
Q Consensus       379 ~~~F~~F~~~i~~~k  393 (396)
                      .-|-+++..-+.+..
T Consensus       240 ~TL~~EY~RD~~~g~  254 (298)
T pfam04204       240 DTLKDEYERDLAKGL  254 (298)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             489999999997699


No 97 
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.09  E-value=0.0048  Score=42.12  Aligned_cols=151  Identities=20%  Similarity=0.337  Sum_probs=74.8

Q ss_pred             HHHHHHHC-CCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             32222202-4541330465744644135788998588888410112-----11012221025786347861005887875
Q gi|254780420|r  220 LRVLSSLG-CRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       220 lr~L~~~g-~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      ++.|.+.+ .++..+..   .+++..  -||++|.+|-..  ....     ...+.++++...++|+||-|-|+=+||.-
T Consensus        16 ~~~l~~~~~~e~~~Vk~---~~dL~~--~d~LIiPGGEST--Ti~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake   88 (194)
T COG0311          16 LEALEKAGGAEVVEVKR---PEDLEG--VDGLIIPGGEST--TIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE   88 (194)
T ss_pred             HHHHHHHCCCCEEEECC---HHHHCC--CCEEEECCCCHH--HHHHHHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf             99998605873599717---788553--767895495078--99999987384899999997699647751425653465


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEE--EHH-------------------HCCCCCEEEEEECCCCEE
Q ss_conf             28544667767521011234778970999614576157--034-------------------369982899998899808
Q gi|254780420|r  294 LGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAI--DAS-------------------SLPAGLEETHISLFDSSN  352 (396)
Q Consensus       294 ~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v--~~~-------------------slp~~~~v~~~~~nD~ti  352 (396)
                      .-.....   .+-|    +.|+.-.|-.+-.|--+|..  +-+                   ..-++.++.+. + |+-|
T Consensus        89 i~~~~~~---~~Lg----~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~-l-~~~i  159 (194)
T COG0311          89 ILDGPEQ---PLLG----LLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLAT-L-DGRI  159 (194)
T ss_pred             HCCCCCC---CCCC----EEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCEEEHHCCCCEEEEE-C-CCEE
T ss_conf             5089877---5212----2789998136554312301067864136777623999986402000676067666-0-8879


Q ss_pred             EEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7268679977898348788776700168999999999973
Q gi|254780420|r  353 CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKR  392 (396)
Q Consensus       353 egi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~  392 (396)
                      -  .-+..++.+.-||||-+    |..-+-+-|+++...+
T Consensus       160 V--av~qgn~LatsFHPELT----~D~r~Heyf~~~v~~~  193 (194)
T COG0311         160 V--AVKQGNILATSFHPELT----DDTRLHEYFLDMVLGA  193 (194)
T ss_pred             E--EEEECCEEEEECCCCCC----CCCCHHHHHHHHHHCC
T ss_conf             9--99867889985175435----8740999999986516


No 98 
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.06  E-value=0.027  Score=36.84  Aligned_cols=252  Identities=16%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCH-HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf             0236664046544345524179899997427832112576-899999985398423663276545897898887741588
Q gi|254780420|r   89 GAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDT-RALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSG  167 (396)
Q Consensus        89 ~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDT-RaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~  167 (396)
                      .+.|+|.+..... .|   ..-|.+=|++ +||.+--|=- ..|..-=|.-|-..+    . + ....+++.+.+.+..+
T Consensus       140 ~iaGVIlN~v~s~-rh---~~~l~~al~~-~i~vlG~lPr~~~l~lp~RHLGL~~~----~-E-~~~~~~~~~~~~~~vD  208 (432)
T PRK13896        140 DVAGVLAQRAHGG-RH---ADGIRDALPD-ELTYFGRVPPRSDLEIPDRHLGLHMG----S-E-APIDDDALDAAAAHID  208 (432)
T ss_pred             EEEEEEECCCCCH-HH---HHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCC----C-C-CCHHHHHHHHHHHHCC
T ss_conf             4766884267758-89---9999999870-89489884247778984102598733----3-4-4238999999986478


Q ss_pred             CCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEE-----ECCCCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf             74321011013333211168653445434434677777149999-----6796410232222202454133046574464
Q gi|254780420|r  168 LKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCI-----DYGIRSNLLRVLSSLGCRITIVGAETSYKDI  242 (396)
Q Consensus       168 ~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvI-----DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i  242 (396)
                      ++.  +.+. ....+.           .....+....+.+|++-     .|=...| ++.|.+. .++  ++.+--.++-
T Consensus       209 l~~--ll~~-a~~~~~-----------~~~~~~~~~~~~rIavA~D~AF~FyY~dn-l~~L~~~-ael--v~FSPl~D~~  270 (432)
T PRK13896        209 IER--IVDV-ARAPPR-----------PEAHDEAPDTDQTVAVADDSAFCFRYPAT-RERLRER-ADV--VTFSPVAGDP  270 (432)
T ss_pred             HHH--HHHH-HCCCCC-----------CCCCCCCCCCCCEEEEEECCCCCCCCHHH-HHHHHHC-CCE--EEECCCCCCC
T ss_conf             999--9987-508888-----------87776668889769999758627017899-9999847-888--9876635798


Q ss_pred             HHCCCCEEEECCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf             41357889985888884101121-----1012221025786347861005887875285446677675210112347789
Q gi|254780420|r  243 MSLQPDGVLLSNGPGDPAVTSVY-----SSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISN  317 (396)
Q Consensus       243 ~~~~pdgi~lSnGPGdP~~~~~~-----~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t  317 (396)
                      +- +.|||+|.+|  -|+.....     ....+++....+.||++-|=|...|+..+-.        ..|..||.-.+..
T Consensus       271 LP-~~dglylgGG--yPEl~a~~Ls~n~~l~si~~~a~~G~PiyAECGGlMyL~~~l~~--------~~g~~~~M~Gvlp  339 (432)
T PRK13896        271 LP-DCDGVYLPGG--YPELHGEALADGPALDELGARAADGLPVLGECGGLMALAESLTT--------TDGDTYEMAGVLP  339 (432)
T ss_pred             CC-CCCEEEECCC--CCHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC--------CCCCEEEEEEEEC
T ss_conf             99-8898984799--80378999860878999999998699789987308998435165--------7998877251354


Q ss_pred             CEEEEEC--CCCCEEEE---HHHC--CCCCEE----EEEE------------------CCCCEEEEEEECCCCEEEECCC
Q ss_conf             7099961--45761570---3436--998289----9998------------------8998087268679977898348
Q gi|254780420|r  318 GTVEIVS--MNHGFAID---ASSL--PAGLEE----THIS------------------LFDSSNCGFRLIDQPVFSVQYH  368 (396)
Q Consensus       318 ~kv~iTs--qNHg~~v~---~~sl--p~~~~v----~~~~------------------~nD~tiegi~~~~~~~~~vQfH  368 (396)
                      .++.+|.  |.+||...   .+++  +.+-.+    .|++                  -.++.-+|+..++.-.-=+-+|
T Consensus       340 ~~~~m~~r~~~lGY~~~~~~~~~~~~~~G~~~rGHEFHYS~~~~~~~~~~~~~~~rg~g~~~~~dG~~~~n~~asY~HlH  419 (432)
T PRK13896        340 ADVRMQDRYQALDHVELRATGDTLTAGSGAHLRGHEFHYSAATVASDARFAFAVERGDGIDGDHDGLTEYRTLGTYAHVH  419 (432)
T ss_pred             EEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCEEEEEEECC
T ss_conf             28897778554475599963786246899889885752741755898854689861678888857687389999863326


Q ss_pred             CCCCCCCCCHHHHHHHHHHH
Q ss_conf             78877670016899999999
Q gi|254780420|r  369 PESSPGPQDSYYLFSTFIDF  388 (396)
Q Consensus       369 PEa~PGP~D~~~~F~~F~~~  388 (396)
                      |+|.        -|++|++-
T Consensus       420 ~~s~--------~~~rFv~~  431 (432)
T PRK13896        420 PESG--------AFDRFLEA  431 (432)
T ss_pred             CCCC--------HHHHHHHC
T ss_conf             7852--------78888740


No 99 
>pfam07685 GATase_3 CobB/CobQ-like glutamine amidotransferase domain.
Probab=97.05  E-value=0.0027  Score=43.89  Aligned_cols=48  Identities=29%  Similarity=0.527  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCCCCCCCCC------CCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             3578899858888841011------2110122210257863478610058878752
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTS------VYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~------~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      .++|+|+|-.|-  |....      ....+.+++..+...||+|||-|.|+|+..+
T Consensus         6 ~~~D~lilpGg~--~~~~~~~~~~~~~~~~~i~~~~~~G~pi~giCGG~q~Lg~~i   59 (158)
T pfam07685         6 GDADLVILPGGK--PTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETI   59 (158)
T ss_pred             CCCCEEEECCCC--CHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHHH
T ss_conf             998799989954--099999998775579999999977996999875889876550


No 100
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E.  The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.  For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site.  Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=96.86  E-value=0.0012  Score=46.33  Aligned_cols=73  Identities=30%  Similarity=0.538  Sum_probs=50.8

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHH--HHHHCCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             02322222024541330465744--64413578899858888841011--211012221025786347861005887
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYK--DIMSLQPDGVLLSNGPGDPAVTS--VYSSPIICKLVDSGMPMFGICLGHQLL  290 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~--~i~~~~pdgi~lSnGPGdP~~~~--~~~~~~~~~~~~~~iPilGIClGhQ~l  290 (396)
                      .....+.+.++.+.+++......  .....++|++++.+|+..+....  ......+++....+.||+|+|.|.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vii~gg~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~G~~~l   92 (92)
T cd03128          16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCCCCCHHCHHHHHHHHHHHHCCCEEEEECCHHHHC
T ss_conf             99999997799799995389964453686458899978998664210109899999999998799799999047539


No 101
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus.   PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source.  Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.72  E-value=0.0024  Score=44.27  Aligned_cols=60  Identities=18%  Similarity=0.390  Sum_probs=46.6

Q ss_pred             EECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             304657446441357889985888884101--1211012221025786347861005887875
Q gi|254780420|r  233 VGAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       233 vp~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      +..+.+++++...++|+||+.+|+| |...  +.....+++++.+.++||-.||-|-++|+-+
T Consensus        63 ~~~~~~~~dv~~~~yDai~iPGG~g-~~~l~~d~~~~~li~~~~~~gK~iaaIChgp~~L~~a  124 (180)
T cd03169          63 FAVTADFDEVDPDDYDALVIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             EECCCCHHHCCHHHCCEEEECCCCC-HHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
T ss_conf             4267876789861099999899822-8777119799999999998199699778168999876


No 102
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.30  E-value=0.021  Score=37.61  Aligned_cols=216  Identities=19%  Similarity=0.226  Sum_probs=99.4

Q ss_pred             CCCEEEECCCCCCCCCCCH--HH---------HCCCCCCCCCEEEEEEEECCCCCC--CCCCC----CCCHHHHHHHCCC
Q ss_conf             5617321689736845882--34---------204653332102366640465443--45524----1798999974278
Q gi|254780420|r   58 LGQIVNFTFPHIGNVGVNS--ED---------FESISRKNFKGAVGLVIKAEITEP--SNYRA----NMHFDAWLKSCGI  120 (396)
Q Consensus        58 ~gQIlvfT~P~IGNyGvn~--~d---------~ES~~~~~~~~~~g~Iv~~~~~~~--Sn~rs----~~sL~~wL~~~~I  120 (396)
                      --|+|++--| ||+.--..  ++         .||..  .....-.+||.|-.-.|  .|.|.    .+.+.+.. +-.|
T Consensus        85 ~sQVIv~G~~-~G~~s~~~yy~~~~~~l~~~v~~s~~--~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~-dapv  160 (486)
T COG1492          85 GSQVIVMGKD-IGRKSAVEYYQEGKGLLWVAVKESLE--RLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIA-DAPV  160 (486)
T ss_pred             CEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHC-CCCE
T ss_conf             4479994634-46657178899988999999999998--754105589996379823227663661100220233-8988


Q ss_pred             CEECCCCH------HHHHHHH---HHCCCCCEEEECCCCCCCC-HHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCCCCC
Q ss_conf             32112576------8999999---8539842366327654589-789888774158874321011013333211168653
Q gi|254780420|r  121 IGLSGIDT------RALTVWI---RDYGVSNSVIAHHPDGQFD-LEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIW  190 (396)
Q Consensus       121 pgI~GIDT------RaLTk~I---Re~G~~~a~I~~~~~~~~d-~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~~~~  190 (396)
                      .-..+||-      +.=|..|   .+.+-.+|.|.+.-.++.+ ++...+.+.+..+..-....+..         +...
T Consensus       161 ILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~---------~~~~  231 (486)
T COG1492         161 ILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYL---------KDAL  231 (486)
T ss_pred             EEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCC---------CCCC
T ss_conf             9999511564541730212236876760014799963179878874599999986197467565255---------5455


Q ss_pred             CCCCCCC-----CCCCCCCCCEEEEEECC--CCCHHHHHHHH-HCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             4454344-----34677777149999679--64102322222-0245413304657446441357889985888884101
Q gi|254780420|r  191 KWGEETS-----FLKSSDAKYHVVCIDYG--IRSNLLRVLSS-LGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       191 ~~~~~~~-----~~~~~~~~~kIvvIDfG--iK~nIlr~L~~-~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~  262 (396)
                      ...+.+-     ....+....+|+++-+-  .-+.-+.-|.. .+.+|.+++...+..+     ||.|+|   ||.=+..
T Consensus       232 ~p~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dpL~~~~~v~v~~v~~~~~l~~-----~dlvIl---PGsk~t~  303 (486)
T COG1492         232 RPAEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDPLRAEPDVRVRFVKPGSDLRD-----ADLVIL---PGSKNTI  303 (486)
T ss_pred             CCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCC-----CCEEEE---CCCCCCH
T ss_conf             76420227000102589775499996578755644521465279807999616777899-----888994---7985608


Q ss_pred             CCC-------CHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             121-------10122210257863478610058878752
Q gi|254780420|r  263 SVY-------SSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       263 ~~~-------~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      .+.       ..+.+.+....+.||+|||=|+|.|+...
T Consensus       304 ~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         304 ADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf             899999976979999999747997999863577643341


No 103
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons.  DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly 
Probab=96.01  E-value=0.0076  Score=40.74  Aligned_cols=61  Identities=16%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             EECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             304657446441357889985888884101--1211012221025786347861005887875
Q gi|254780420|r  233 VGAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       233 vp~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      +..+.+++++...++|++++.+|++.+...  +......++++.+.+.||.+||-|-++|+.|
T Consensus        47 i~~d~~l~~~~~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~G~~~La~a  109 (163)
T cd03135          47 VKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA  109 (163)
T ss_pred             EECCCCHHHCCCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHHHHC
T ss_conf             946876655782017989986898217677669999999999998299479864548999986


No 104
>PRK00784 cobyric acid synthase; Provisional
Probab=95.98  E-value=0.018  Score=38.14  Aligned_cols=156  Identities=22%  Similarity=0.251  Sum_probs=77.8

Q ss_pred             HCCCCEECCCC----------HHHHH-HHHHHCCCCCEEEECCCCCCCC-HHHHHHHHHHCCC---------CCCCCHHH
Q ss_conf             42783211257----------68999-9998539842366327654589-7898887741588---------74321011
Q gi|254780420|r  117 SCGIIGLSGID----------TRALT-VWIRDYGVSNSVIAHHPDGQFD-LEDLKERAKNWSG---------LKGAELAK  175 (396)
Q Consensus       117 ~~~IpgI~GID----------TRaLT-k~IRe~G~~~a~I~~~~~~~~d-~~~~~~~~~~~~~---------~~~~dL~~  175 (396)
                      ...|.-+.+||          |.+|- ..-|+  -.+|.|.+.-.++.+ ++...+.+++..+         +++..|..
T Consensus       158 ~apviLV~DIdRGGvfAsl~GT~~lL~~~eR~--li~G~IiNKFRGD~~ll~pG~~~le~~tg~PvlGviP~~~~l~l~~  235 (492)
T PRK00784        158 DAPVILVADIDRGGVFASLVGTLALLSPEERA--RVKGFVINKFRGDISLLEPGLDWLEELTGIPVLGVLPYLDDLRLPA  235 (492)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCHHHHH--HEEEEEEEEECCCHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             99889999756764268776388759998871--1589999764587466355999999986898068614656799881


Q ss_pred             CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHH--HHHHH-HHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf             01333321116865344543443467777714999967964102--32222-2024541330465744644135788998
Q gi|254780420|r  176 HVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNL--LRVLS-SLGCRITIVGAETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       176 ~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nI--lr~L~-~~g~~v~Vvp~~~~~~~i~~~~pdgi~l  252 (396)
                      +=|...            ...........+.+|+||.+=-=-|-  +.-|. +-++++..++.   .+++-  +||.|+|
T Consensus       236 EDs~~l------------~~~~~~~~~~~~l~IaVi~lP~iSNftDfdpL~~e~~V~l~~v~~---~~~l~--~~D~vIl  298 (492)
T PRK00784        236 EDSLDL------------LLERAAGKGAGRLRVAVPRLPRISNFTDFDPLRAEPGVDVRYVRP---GEPLP--DADLVIL  298 (492)
T ss_pred             CCCCCC------------CCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCEEEEEECC---CCCCC--CCCEEEE
T ss_conf             015754------------344556777773589998067556865443564078728999789---76568--9999997


Q ss_pred             CCCCCCCCCCCCC-------CHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             5888884101121-------10122210257863478610058878752
Q gi|254780420|r  253 SNGPGDPAVTSVY-------SSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       253 SnGPGdP~~~~~~-------~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                         ||.-....+.       ....+++....+.||+|||=|.|.|+...
T Consensus       299 ---PGsK~Ti~DL~~Lr~~Gl~~~i~~~~~~G~~V~GICGGyQMLG~~I  344 (492)
T PRK00784        299 ---PGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRTI  344 (492)
T ss_pred             ---CCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHHHCCEE
T ss_conf             ---9986648999999986949999999975997899870288630200


No 105
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus.   PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source.  Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.81  E-value=0.013  Score=39.02  Aligned_cols=64  Identities=19%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             41330465744644135788998588888410112110122210257863478610058878752
Q gi|254780420|r  230 ITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       230 v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      +.+.| +.+++++...++|.|+|-+|+.-.........+.++++.+.+.+|.+||-|-++|+.|-
T Consensus        45 ~~i~~-D~~l~~v~~~~~D~lvlPGG~~~~~~~~~~l~~~l~~~~~~gk~iaaIC~g~~vLa~aG  108 (170)
T cd03140          45 LRVVP-DYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARAG  108 (170)
T ss_pred             CEEEC-CCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHCC
T ss_conf             47956-75868889021778998688751002499999999999874990999865589999859


No 106
>KOG3210 consensus
Probab=95.58  E-value=0.18  Score=31.04  Aligned_cols=75  Identities=17%  Similarity=0.360  Sum_probs=42.7

Q ss_pred             HHH-HHHHHH--CCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCH-----HHHHHHC-CCCCCEEEEECHHH
Q ss_conf             023-222220--24541330465744644135788998588888410112110-----1222102-57863478610058
Q gi|254780420|r  218 NLL-RVLSSL--GCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS-----PIICKLV-DSGMPMFGICLGHQ  288 (396)
Q Consensus       218 nIl-r~L~~~--g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~-----~~~~~~~-~~~iPilGIClGhQ  288 (396)
                      |++ |++.+-  +..+.|.|..+ .+|..  +-||+++-+|-..  ..+..+.     ..+-.+. +..+|++|-|-|+-
T Consensus        28 N~~~~c~~en~y~Ik~~~~tVKT-~~D~a--q~DaLIIPGGEST--~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI  102 (226)
T KOG3210          28 NHVEKCIVENRYEIKLSVMTVKT-KNDLA--QCDALIIPGGEST--AMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI  102 (226)
T ss_pred             HHHHHHHCCCCCEEEEEEEEECC-HHHHH--HCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf             78877530586267888886157-77786--5777783398502--6788874410177799984488864034102253


Q ss_pred             HHHHHCCCC
Q ss_conf             878752854
Q gi|254780420|r  289 LLGLALGAQ  297 (396)
Q Consensus       289 ~l~~a~G~~  297 (396)
                      +|+..+-++
T Consensus       103 ~LS~ql~ne  111 (226)
T KOG3210         103 YLSQQLSNE  111 (226)
T ss_pred             HHHHHHCCC
T ss_conf             105655288


No 107
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide.  CobB belongs to the triad family of amidotransferases.  Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=95.37  E-value=0.11  Score=32.63  Aligned_cols=78  Identities=23%  Similarity=0.414  Sum_probs=51.0

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC------CHHHHHHHCCCCCCEEEEEC
Q ss_conf             679641023222220245413304657446441357889985888884101121------10122210257863478610
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY------SSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~------~~~~~~~~~~~~iPilGICl  285 (396)
                      .|=-..| ++.|.+.|++++-+..-.  ++-+- +-|||.|..  |-|+.....      ....+++..+.+.||++.|=
T Consensus        10 ~FyY~en-l~~L~~~Gaelv~FSPl~--d~~lP-~~d~lylgG--GyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECG   83 (198)
T cd03130          10 NFYYPEN-LELLEAAGAELVPFSPLK--DEELP-DADGLYLGG--GYPELFAEELSANQSMRESIRAFAESGGPIYAECG   83 (198)
T ss_pred             CEECHHH-HHHHHHCCCEEEEECCCC--CCCCC-CCCEEECCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECH
T ss_conf             5557999-999998899789877767--88899-876898279--98758899997679999999999984997799820


Q ss_pred             HHHHHHHHCC
Q ss_conf             0588787528
Q gi|254780420|r  286 GHQLLGLALG  295 (396)
Q Consensus       286 GhQ~l~~a~G  295 (396)
                      |++.|+..+-
T Consensus        84 GlMyL~~~i~   93 (198)
T cd03130          84 GLMYLGESLD   93 (198)
T ss_pred             HHHHHHHHCC
T ss_conf             4888742205


No 108
>pfam01965 DJ-1_PfpI DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.
Probab=95.35  E-value=0.017  Score=38.26  Aligned_cols=63  Identities=19%  Similarity=0.326  Sum_probs=48.1

Q ss_pred             EEEECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             13304657446441357889985888884101--1211012221025786347861005887875
Q gi|254780420|r  231 TIVGAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       231 ~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      ..+..+.+++++...++|.|++..|.+-+...  +......++++.+.+.+|.+||-|-.+|+.+
T Consensus        19 ~~v~~d~~~~~~~~~~~D~lvipGG~~~~~~l~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~~   83 (141)
T pfam01965        19 VKLRADKTLDDVNADDYDALVIPGGHAAAEDLRDDEKLVKFVKEFYEAGKPIAAICHGPVLLAAA   83 (141)
T ss_pred             CEEECCCCHHHCCHHHCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHHHHC
T ss_conf             78967701888895249999996994067664019999999999998399899987668999986


No 109
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=94.84  E-value=0.13  Score=32.06  Aligned_cols=164  Identities=18%  Similarity=0.324  Sum_probs=103.0

Q ss_pred             CCHHHHHHHC--CCCEECCCCHHHHHHHHHHCCCCCEEEECC-CCCCCC------HHHHHHHHHHCCCCCCCC-HHHCCC
Q ss_conf             7989999742--783211257689999998539842366327-654589------789888774158874321-011013
Q gi|254780420|r  109 MHFDAWLKSC--GIIGLSGIDTRALTVWIRDYGVSNSVIAHH-PDGQFD------LEDLKERAKNWSGLKGAE-LAKHVT  178 (396)
Q Consensus       109 ~sL~~wL~~~--~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~-~~~~~d------~~~~~~~~~~~~~~~~~d-L~~~Vs  178 (396)
                      ..|.+-|+..  +..+|..+|. .+=+...+.|=.=+.|+.. ...+.+      +.++.+.+.-.|..+--| ++.+--
T Consensus       471 V~~e~~l~~~~n~~~~I~~~~~-e~L~~aK~lGFSD~~iA~~~~~~~~~~~~~~~vR~~R~~~gi~Pv~K~vDTcAAEF~  549 (1089)
T TIGR01369       471 VELEKELEELKNKLTGIEELDK-ELLRKAKKLGFSDAQIARLVNVTEAESIEELEVRKLRKELGIIPVYKRVDTCAAEFE  549 (1089)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHCCCCHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf             9999998753012445334898-899998641888789999868974442006899999984697477877523212020


Q ss_pred             CCCCEECCCCCCCCC-CCCCCCCCCCCCCEEEEE-------------ECCCCCHHHHHHHHHCCCCEEEECC-----CCH
Q ss_conf             333211168653445-434434677777149999-------------6796410232222202454133046-----574
Q gi|254780420|r  179 VSQRRDWSEKIWKWG-EETSFLKSSDAKYHVVCI-------------DYGIRSNLLRVLSSLGCRITIVGAE-----TSY  239 (396)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kIvvI-------------DfGiK~nIlr~L~~~g~~v~Vvp~~-----~~~  239 (396)
                      .+.+|-|  .++... ++..+  ..+.|++|++|             ||+.=+ -+..|++.|.+++++.||     |++
T Consensus       550 A~TpY~Y--STY~~e~~d~~~--~~~~Kk~~lvlGSGp~RIGqgvEFDYc~Vh-~~~aLr~~Gye~ImiN~NPETVSTDy  624 (1089)
T TIGR01369       550 AKTPYLY--STYEGERDDVEF--TEKEKKKVLVLGSGPNRIGQGVEFDYCCVH-AVLALREAGYETIMINYNPETVSTDY  624 (1089)
T ss_pred             CCCCCCC--CCCCCCCCCCCC--CCCCCCEEEEECCCCEECCCCEEEHHHHHH-HHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf             1568852--577666567666--657785689987845140663120567899-99999872995999977899743666


Q ss_pred             HH-------------HH----HCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCC-CCEEEEEC
Q ss_conf             46-------------44----1357889985888884101121101222102578-63478610
Q gi|254780420|r  240 KD-------------IM----SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSG-MPMFGICL  285 (396)
Q Consensus       240 ~~-------------i~----~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~-iPilGICl  285 (396)
                      |.             |+    ..+|+||++|=| |   +   +..++.+++-+.+ +||||-=.
T Consensus       625 D~sDrLYFEplt~E~Vm~I~e~E~~~GVIVq~G-G---Q---tp~nlA~~L~~~GG~~iLGTS~  681 (1089)
T TIGR01369       625 DTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFG-G---Q---TPLNLAKELEEAGGVPILGTSP  681 (1089)
T ss_pred             HHHHHCCCCCCCCCCCEEHEEECCCCEEEEECC-C---H---HHHHHHHHHHHCCCCEEECCCH
T ss_conf             651011587635031001100058667999748-7---3---2678999999708931736885


No 110
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus.   This group includes proteins similar to PfpI from P.  furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source.  Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.  For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain.  PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=94.33  E-value=0.044  Score=35.34  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=45.5

Q ss_pred             EECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             304657446441357889985888884101--1211012221025786347861005887875
Q gi|254780420|r  233 VGAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       233 vp~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      +..+.+++++...++|+|+|-.|.| |...  .......++++.+.+.||..||-|-++|+.+
T Consensus        49 v~~d~~l~~~~~~~yD~ivlPGG~g-~~~l~~~~~~~~~i~~~~~~~k~iaaIC~gp~~L~~~  110 (165)
T cd03134          49 VTVDLTIADVDADDYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA  110 (165)
T ss_pred             EECCCCHHHCCHHHCCEEEECCCCC-HHHHHHCHHHHHHHHHHHHHCCCEEEECCHHHHHHHC
T ss_conf             8678657998962288899789858-8888529899999999997199299998757877457


No 111
>PRK11574 hypothetical protein; Provisional
Probab=94.12  E-value=0.074  Score=33.78  Aligned_cols=65  Identities=14%  Similarity=0.119  Sum_probs=45.3

Q ss_pred             EEECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCC
Q ss_conf             3304657446441357889985888884101--1211012221025786347861005887875285
Q gi|254780420|r  232 IVGAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLALGA  296 (396)
Q Consensus       232 Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~  296 (396)
                      .+..|..++++...++|+|+|-+|..-+...  +....++++++.+.+.+|-.||-+=+++--..|.
T Consensus        52 ~i~aD~~l~~v~~~~yD~ivlPGG~~ga~~L~~~~~v~~~lk~~~~~gK~iAAICAaP~~vL~~~gl  118 (196)
T PRK11574         52 KLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAPATVLVPHDI  118 (196)
T ss_pred             EEECCCCHHHCCCCCCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCC
T ss_conf             8957867777782558889917880379998739899999999998799199982406999987886


No 112
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.10  E-value=0.11  Score=32.62  Aligned_cols=13  Identities=46%  Similarity=0.971  Sum_probs=4.5

Q ss_pred             CEEEEECHHHHHH
Q ss_conf             3478610058878
Q gi|254780420|r  279 PMFGICLGHQLLG  291 (396)
Q Consensus       279 PilGIClGhQ~l~  291 (396)
                      +|+|||-|+|+|+
T Consensus        68 ~IiGICsGFQiL~   80 (482)
T PRK06278         68 YILGICSGFQILA   80 (482)
T ss_pred             EEEEECHHHHHHH
T ss_conf             5899611678877


No 113
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=93.80  E-value=0.2  Score=30.79  Aligned_cols=161  Identities=25%  Similarity=0.351  Sum_probs=86.7

Q ss_pred             CCCCCEEEEEEC-C--CCCHHHHHHHHHCCCCEEEECC-CCHHHHH--------HCCCCEEE-ECCC--CCC-CCCCCCC
Q ss_conf             777714999967-9--6410232222202454133046-5744644--------13578899-8588--888-4101121
Q gi|254780420|r  202 SDAKYHVVCIDY-G--IRSNLLRVLSSLGCRITIVGAE-TSYKDIM--------SLQPDGVL-LSNG--PGD-PAVTSVY  265 (396)
Q Consensus       202 ~~~~~kIvvIDf-G--iK~nIlr~L~~~g~~v~Vvp~~-~~~~~i~--------~~~pdgi~-lSnG--PGd-P~~~~~~  265 (396)
                      .-.|++|++==| |  .=|-..+.+.+.|++|..++-+ -+.+.|.        +++=.-|| |.+|  -|| |.=..+.
T Consensus      1013 ~v~KP~VvIpvFPGtNsEYD~~~aFe~~GAev~~~~~~nL~~~a~~~Sv~~l~~~i~ksqI~~lpGGFSAgDEPDGSAKF 1092 (1279)
T TIGR01857      1013 KVEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVKLVILRNLTEEALVESVEELVDEIDKSQILMLPGGFSAGDEPDGSAKF 1092 (1279)
T ss_pred             EEECCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHH
T ss_conf             54078679813588984888888985458958996000388889999999998740464089955878777788852899


Q ss_pred             ---------CHHHHHHHCC--CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCC-------------C-CCCEECCCCEE
Q ss_conf             ---------1012221025--786347861005887875285446677675210-------------1-12347789709
Q gi|254780420|r  266 ---------SSPIICKLVD--SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGV-------------N-HPVKNISNGTV  320 (396)
Q Consensus       266 ---------~~~~~~~~~~--~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~-------------N-~Pv~~~~t~kv  320 (396)
                               +.+.++.+++  .++ |||||=|+|+|- -+|.    ||||.-..             | |=-+-+.|   
T Consensus      1093 i~~~l~npkv~~~v~~lL~~RDGL-iLGiCNGFQALv-K~GL----lPYG~i~~~~~~~pTLtyN~inrH~s~~V~T--- 1163 (1279)
T TIGR01857      1093 IAAILRNPKVKEAVKKLLKERDGL-ILGICNGFQALV-KLGL----LPYGEIVDVEEDSPTLTYNKINRHVSKIVRT--- 1163 (1279)
T ss_pred             HHHHHHCHHHHHHHHHHHHHCCCE-EEEEEHHHHHHH-HHCC----CCCCCEEECCCCCCCCCCCCHHHHHEEEEEE---
T ss_conf             999760814799999999607984-986200567888-8247----8886424004578631202010120101235---


Q ss_pred             EEECC------------------CCC---EEEEHHH---CCC-CCEEE-E------------EECCCCE---EEEEEECC
Q ss_conf             99614------------------576---1570343---699-82899-9------------9889980---87268679
Q gi|254780420|r  321 EIVSM------------------NHG---FAIDASS---LPA-GLEET-H------------ISLFDSS---NCGFRLID  359 (396)
Q Consensus       321 ~iTsq------------------NHg---~~v~~~s---lp~-~~~v~-~------------~~~nD~t---iegi~~~~  359 (396)
                      -|+|.                  .||   |.+...-   |-. +=..| |            +|.| ||   ||||..++
T Consensus      1164 ki~~~~SPWL~~~~vGdih~ipvSHGEGrFva~~~~l~~L~~NGQIatQYVD~~G~~~m~~~yNPN-GS~~AIEGI~S~d 1242 (1279)
T TIGR01857      1164 KIASKNSPWLSEVSVGDIHAIPVSHGEGRFVASDEVLKELRENGQIATQYVDFEGKPAMDLKYNPN-GSSLAIEGIISPD 1242 (1279)
T ss_pred             EECCCCCCCCCCEEECCEEEEEEECCCCCEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC-CCCEEECCEECCC
T ss_conf             650477884021032427753344489832307789989863796378987267863578866978-5302463445689


Q ss_pred             CCEEEECCCCCCC
Q ss_conf             9778983487887
Q gi|254780420|r  360 QPVFSVQYHPESS  372 (396)
Q Consensus       360 ~~~~~vQfHPEa~  372 (396)
                      -.|||=.=|=|=.
T Consensus      1243 G~i~GKMGHSER~ 1255 (1279)
T TIGR01857      1243 GRIFGKMGHSERY 1255 (1279)
T ss_pred             CEEEEECCCEEEC
T ss_conf             7275204520244


No 114
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=93.71  E-value=0.052  Score=34.87  Aligned_cols=164  Identities=19%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             HHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCC-----CCCHHHHHHHCCCCCCEEEEECHHHHHHHHCC
Q ss_conf             2222202454133046574464413578899858888841011-----21101222102578634786100588787528
Q gi|254780420|r  221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTS-----VYSSPIICKLVDSGMPMFGICLGHQLLGLALG  295 (396)
Q Consensus       221 r~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~-----~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G  295 (396)
                      +...+||..|+|++-+-. +.+.....|-+|+..|- |-+..-     ....+-++..++...|+|.||=|.|+|+..+-
T Consensus        28 ~ra~~rgi~v~i~~vsl~-d~~~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~  105 (250)
T COG3442          28 QRAEKRGIKVEIVEVSLT-DTFPDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYE  105 (250)
T ss_pred             HHHHHCCCCEEEEEEECC-CCCCCCCCCEEEECCCH-HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCHHHCCCEEE
T ss_conf             789866981699996347-89874440279951720-7888887521001037799998669958998255533040321


Q ss_pred             ----CCCCCCC-CCCCCCCCCCEECCCCEEEEE--------------CCCCCEE-E-EHHHCCCCCEEEEEECC--CCEE
Q ss_conf             ----5446677-675210112347789709996--------------1457615-7-03436998289999889--9808
Q gi|254780420|r  296 ----AQTVKMY-QGHHGVNHPVKNISNGTVEIV--------------SMNHGFA-I-DASSLPAGLEETHISLF--DSSN  352 (396)
Q Consensus       296 ----~~~~kl~-~GhrG~N~Pv~~~~t~kv~iT--------------sqNHg~~-v-~~~slp~~~~v~~~~~n--D~ti  352 (396)
                          -++.-+- .+|--.| |-.+-..|.+.|+              -.||+=. . .++.-|-+ +|.+=.-|  ++--
T Consensus       106 ~a~G~ri~GlGiLd~~T~~-~~~~R~IGdiv~~~~~~~e~~~et~~GFENH~GrT~L~~d~~pLG-~Vv~G~GNn~eD~~  183 (250)
T COG3442         106 TASGTRIDGLGILDHYTEN-PQTKRFIGDIVIENTLAGEEFGETLVGFENHGGRTYLGPDVKPLG-KVVYGYGNNGEDGT  183 (250)
T ss_pred             CCCCCEEECCCCEEEEECC-CCCCCEEEEEEEECCCCHHHHCCEEEEEECCCCCEECCCCCCCCE-EEEECCCCCCCCCC
T ss_conf             6898476132211234126-666504536886214565773880462543788134189876460-07886677755466


Q ss_pred             EEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             72686799778983487887767001689999999999735
Q gi|254780420|r  353 CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       353 egi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k  393 (396)
                      ||..  .+++++.=||=-.-|   -.-.|=|.++....+.|
T Consensus       184 eG~~--ykn~~aTY~HGP~L~---rNp~LAd~Ll~tAl~~k  219 (250)
T COG3442         184 EGAH--YKNVIATYFHGPILS---RNPELADRLLTTALEKK  219 (250)
T ss_pred             CCEE--EEEEEEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_conf             4234--520478751175446---88789999999999886


No 115
>KOG2764 consensus
Probab=92.73  E-value=0.14  Score=31.85  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=44.5

Q ss_pred             CEEEECCCCHHHHHHCCCCEEEECCC-CCCCC-CCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCC
Q ss_conf             41330465744644135788998588-88841-011211012221025786347861005887875285
Q gi|254780420|r  230 ITIVGAETSYKDIMSLQPDGVLLSNG-PGDPA-VTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGA  296 (396)
Q Consensus       230 v~Vvp~~~~~~~i~~~~pdgi~lSnG-PGdP~-~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~  296 (396)
                      ++.+|-+..++... .+||.|+|-+| ||--. .......++++++.+.+.+|+.||-|--+...+.|-
T Consensus        52 v~~~~d~~l~D~~~-~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl  119 (247)
T KOG2764          52 VHILPDNALFDVVD-SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGL  119 (247)
T ss_pred             EEECCCCCCHHHCC-CCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCC
T ss_conf             37625531012113-566689946996056665306889999999875299699862056989741655


No 116
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.60  E-value=0.32  Score=29.28  Aligned_cols=34  Identities=18%  Similarity=0.050  Sum_probs=13.4

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             66404654434552417989999742783211257
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      +||...-..|.|... ..+-...++.+||-|+.||
T Consensus        72 ~vV~SPGI~p~~p~~-~~~l~~A~~~gi~i~~eie  105 (501)
T PRK02006         72 LVALSPGLSPLEPAL-AALLAAARERGIPVWGELE  105 (501)
T ss_pred             EEEECCEECCCCCCH-HHHHHHHHHCCCCEEEHHH
T ss_conf             999899008888543-1999999987995876899


No 117
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine.  It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation.  HTS acti
Probab=92.55  E-value=0.16  Score=31.43  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             CHHHHHHCCCCEEEECCCCCCCCCCCC----C---CHHHHHHHCCCCCCEEEEECHHHHHHHHC-CCCCCCCC
Q ss_conf             744644135788998588888410112----1---10122210257863478610058878752-85446677
Q gi|254780420|r  238 SYKDIMSLQPDGVLLSNGPGDPAVTSV----Y---SSPIICKLVDSGMPMFGICLGHQLLGLAL-GAQTVKMY  302 (396)
Q Consensus       238 ~~~~i~~~~pdgi~lSnGPGdP~~~~~----~---~~~~~~~~~~~~iPilGIClGhQ~l~~a~-G~~~~kl~  302 (396)
                      ++++|...++||+++.+-|  ++..+-    +   ..+++...-......|+||+|.|+....+ |-+-+.++
T Consensus        54 ~~~~i~~~~~DglIITGAP--ve~l~fe~v~YW~El~~i~dwa~~~v~stl~iCWaA~Aal~~~ygI~k~~l~  124 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLP  124 (175)
T ss_pred             HHHHHHHCCCCEEEEECCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEECC
T ss_conf             4998741777668971899--8878834387799999999999873663345649999999998399840068


No 118
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=92.24  E-value=0.11  Score=32.67  Aligned_cols=45  Identities=31%  Similarity=0.497  Sum_probs=27.5

Q ss_pred             CCCEEEECCCCCCCCCCCCC-------CHHHHHHHCCCCCC-EEEEECHHHHHHHHC
Q ss_conf             57889985888884101121-------10122210257863-478610058878752
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVY-------SSPIICKLVDSGMP-MFGICLGHQLLGLAL  294 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~-------~~~~~~~~~~~~iP-ilGIClGhQ~l~~a~  294 (396)
                      ++|.|++   ||.=....+.       ..+.+..+ .+.+| ++|||=|.|+|+..+
T Consensus       287 ~~d~vIi---PGsk~ti~dl~~L~~~~~~~~i~~~-~~~ig~V~GICGGYQ~LG~~l  339 (502)
T TIGR00313       287 GLDAVII---PGSKDTIADLKALKESGFAEEILDL-AKEIGIVIGICGGYQMLGKEL  339 (502)
T ss_pred             CCEEEEE---CCCCCHHHHHHHHHHCCCHHHHHHH-HHCCCEEEEECCCHHHHHHHH
T ss_conf             8448996---7996578999999746866799999-606988998347602100310


No 119
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=91.83  E-value=0.2  Score=30.71  Aligned_cols=63  Identities=19%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             EECCCCHHHHHHCCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCCCCCEEEEECHHHHHHHHCC
Q ss_conf             3046574464413578899858888841011--21101222102578634786100588787528
Q gi|254780420|r  233 VGAETSYKDIMSLQPDGVLLSNGPGDPAVTS--VYSSPIICKLVDSGMPMFGICLGHQLLGLALG  295 (396)
Q Consensus       233 vp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~--~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G  295 (396)
                      +..+..++++...++|++++..|..-|....  ......++++.+.+.||..||=|-++|+-+-.
T Consensus        53 ~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~  117 (188)
T COG0693          53 VADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGL  117 (188)
T ss_pred             EECCHHCCCCCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCC
T ss_conf             83212116578135989998899752322135178999999999769989998468899874768


No 120
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=91.06  E-value=1.5  Score=24.63  Aligned_cols=89  Identities=16%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             CCCCCCEEEEEEC-CC--CCHHHHHHHHHCCCCEEEECCCCHHHHHH-----CCCCEEEECCC--CCCCCCCCC------
Q ss_conf             7777714999967-96--41023222220245413304657446441-----35788998588--888410112------
Q gi|254780420|r  201 SSDAKYHVVCIDY-GI--RSNLLRVLSSLGCRITIVGAETSYKDIMS-----LQPDGVLLSNG--PGDPAVTSV------  264 (396)
Q Consensus       201 ~~~~~~kIvvIDf-Gi--K~nIlr~L~~~g~~v~Vvp~~~~~~~i~~-----~~pdgi~lSnG--PGdP~~~~~------  264 (396)
                      ....++|||++=+ |+  -+-..+.+.+-|+++.-|-.    .|+++     .++.||++.+|  -||.--..+      
T Consensus      1034 ~~~~kPkVAIlreqG~Nge~EmAaAF~~AGF~~~DVhm----sDL~~g~~~L~~f~glva~GGFSyGDvlGsgkGwA~si 1109 (1294)
T PRK05297       1034 ATGARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHM----SDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSI 1109 (1294)
T ss_pred             CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEH----HHCCCCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             47999838997689879679999999986993488652----31003611787791899878768767775678999999


Q ss_pred             ----CCHHHHHHHCCC-CCCEEEEECHHHHHHHH
Q ss_conf             ----110122210257-86347861005887875
Q gi|254780420|r  265 ----YSSPIICKLVDS-GMPMFGICLGHQLLGLA  293 (396)
Q Consensus       265 ----~~~~~~~~~~~~-~iPilGIClGhQ~l~~a  293 (396)
                          .+...+..++.. .-=.||||=|.|+|+.-
T Consensus      1110 l~N~~~r~~f~~Ff~r~DtfsLGICNGcQ~L~~L 1143 (1294)
T PRK05297       1110 LFNPRLRDQFAAFFARPDTFALGVCNGCQMMSNL 1143 (1294)
T ss_pred             HCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHC
T ss_conf             7299999999999739994599953889999977


No 121
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31).  This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein.  EcHsp31 has chaperone activity.  Ydr533c is upregulated in response to various stress conditions along with the heat shock family.  EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A.   The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different 
Probab=90.66  E-value=0.22  Score=30.51  Aligned_cols=61  Identities=13%  Similarity=0.194  Sum_probs=45.3

Q ss_pred             ECCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             04657446441357889985888884101--12110122210257863478610058878752
Q gi|254780420|r  234 GAETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       234 p~~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      ....++++|...++|+||+.+|.|-..+.  +.....+++.+.+.+.||-.||-|-..|..+-
T Consensus        78 ~~~~~l~~v~~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~gk~vaaiCHGp~~L~~~~  140 (221)
T cd03141          78 ANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK  140 (221)
T ss_pred             HCCCCHHHCCHHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC
T ss_conf             587896789987883899899854587744169999999999974985999763079887500


No 122
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II.  This GATase1-like domain has an essential role in HP-II catalase activity.  However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII.  Catalase-1 is associated with non-growing cells; C
Probab=90.07  E-value=0.27  Score=29.80  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             ECCCCHHHHHHCCCCEEEECCCCCCCCC--CCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             0465744644135788998588888410--112110122210257863478610058878752
Q gi|254780420|r  234 GAETSYKDIMSLQPDGVLLSNGPGDPAV--TSVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       234 p~~~~~~~i~~~~pdgi~lSnGPGdP~~--~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      +.+.++++..+..+|++++-.|+..+..  .+......+++.+...+||-.||-|-++|..+-
T Consensus        50 ~vd~t~~~~~s~~fDAvvipgG~~~~~~L~~~~~~~~fv~eay~h~KpI~a~~~~~~lL~~ag  112 (142)
T cd03132          50 EVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAG  112 (142)
T ss_pred             ECCEEECCCCHHHCCEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCC
T ss_conf             054435368964713688438877988864486799999999976997999377299999769


No 123
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.29  E-value=0.71  Score=26.84  Aligned_cols=64  Identities=23%  Similarity=0.455  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             96410232222202454133046574-------46441357889985888884101121101222102578634786
Q gi|254780420|r  214 GIRSNLLRVLSSLGCRITIVGAETSY-------KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       214 GiK~nIlr~L~~~g~~v~Vvp~~~~~-------~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      |+++.+-..=..+|.+++++-..-+.       ++....+||||++  +|-|+...    ...++...+.+||+.|.
T Consensus        17 ~v~~G~~eaA~~lGw~v~v~D~~g~~~~~~~~i~~ai~~k~D~Iii--~~~D~~~~----~~~l~~A~~agIPvv~~   87 (280)
T cd06315          17 GVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVL--GGVDAAEL----QAELELAQKAGIPVVGW   87 (280)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCHHHH----HHHHHHHHHCCCCEEEE
T ss_conf             4988999999975987999889999999999999999639999999--98297887----89999999879978962


No 124
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate  disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.82  E-value=0.33  Score=29.22  Aligned_cols=66  Identities=23%  Similarity=0.370  Sum_probs=48.7

Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHH----HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             446441357889985888884101121101222102578634786100588----7875285446677675210112
Q gi|254780420|r  239 YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQL----LGLALGAQTVKMYQGHHGVNHP  311 (396)
Q Consensus       239 ~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~----l~~a~G~~~~kl~~GhrG~N~P  311 (396)
                      +++|..+.||+++|-  --+|...   +...+.+.  .++.++|+|=++|-    ||..+|..-.++.+-.-|.||=
T Consensus       128 a~~i~e~cP~AwliN--ytNP~~i---vt~a~~r~--~~~k~vGlCh~~~~~~~~la~~Lg~~~~~i~~~~~GlNH~  197 (419)
T cd05296         128 AEDVEELAPDAWLIN--FTNPAGI---VTEAVLRH--TGDRVIGLCNVPIGLQRRIAELLGVDPEDVFIDYAGLNHL  197 (419)
T ss_pred             HHHHHHHCCCCEEEE--CCCHHHH---HHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHCCCHHHEEEEEEEECCH
T ss_conf             999998699838997--3787999---99999966--8998899797779899999999589879907899865548


No 125
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.63  E-value=0.46  Score=28.19  Aligned_cols=31  Identities=13%  Similarity=0.129  Sum_probs=18.3

Q ss_pred             CCHHHHHHHCCCCEECCCCHHHH--HHHHHHCC
Q ss_conf             79899997427832112576899--99998539
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGIDTRAL--TVWIRDYG  139 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GIDTRaL--Tk~IRe~G  139 (396)
                      .+++++.++-++.-.-|=|=-.|  .|.+....
T Consensus        34 ~~~~e~~~~~Dlii~iGGDGT~L~a~r~~~~~~   66 (272)
T PRK02231         34 ASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYD   66 (272)
T ss_pred             CCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf             798897017789999787589999999860059


No 126
>KOG0538 consensus
Probab=87.96  E-value=2.5  Score=23.05  Aligned_cols=93  Identities=29%  Similarity=0.419  Sum_probs=63.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHH---HHCCCCEEEECCCCCC-----CCCCCCCCHHHHHHHCCC
Q ss_conf             71499996796410232222202454133046574464---4135788998588888-----410112110122210257
Q gi|254780420|r  205 KYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDI---MSLQPDGVLLSNGPGD-----PAVTSVYSSPIICKLVDS  276 (396)
Q Consensus       205 ~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i---~~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~~~~~  276 (396)
                      .+-...+|--.-|+=+..|+..---.+|+---.+.+|.   .+..-+||++||--|.     |+..+  ..+.+.+..++
T Consensus       200 ~~~~~~id~Sl~W~Di~wLr~~T~lPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~--~L~Evv~aV~~  277 (363)
T KOG0538         200 AYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIE--ALPEVVKAVEG  277 (363)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHH--HHHHHHHHHCC
T ss_conf             6642378877774246999852758769983114387999998088659985787532576641188--79999998628


Q ss_pred             CCCEE---EEECHHHHH-HHHCCCCCC
Q ss_conf             86347---861005887-875285446
Q gi|254780420|r  277 GMPMF---GICLGHQLL-GLALGAQTV  299 (396)
Q Consensus       277 ~iPil---GIClGhQ~l-~~a~G~~~~  299 (396)
                      ++|+|   |+--|.-++ |+|+||+..
T Consensus       278 ri~V~lDGGVR~G~DVlKALALGAk~V  304 (363)
T KOG0538         278 RIPVFLDGGVRRGTDVLKALALGAKGV  304 (363)
T ss_pred             CEEEEEECCCCCCHHHHHHHHCCCCEE
T ss_conf             547997267335427999985167368


No 127
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.96  E-value=1.4  Score=24.74  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             HHHHHCCCCEEEECCCCHH-------HHHHCC--CCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHH
Q ss_conf             2222024541330465744-------644135--788998588888410112110122210-257863478610058878
Q gi|254780420|r  222 VLSSLGCRITIVGAETSYK-------DIMSLQ--PDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       222 ~L~~~g~~v~Vvp~~~~~~-------~i~~~~--pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~  291 (396)
                      .|.+.+..+.++..+.+..       +++.-+  .|+||-.|..   ....  +...++.. +.+++.|.|+-..-+.+.
T Consensus       150 ~l~~~~~~~~~~~~~~d~~~a~~~~~~~L~~~pdi~~I~~~nd~---~a~g--a~~Al~~ag~~~~i~vvg~D~~~~~~~  224 (271)
T cd06312         150 GLGGAGITEEVIETGADPTEVASRIAAYLRANPDVDAVLTLGAP---SAAP--AAKALKQAGLKGKVKLGGFDLSPATLQ  224 (271)
T ss_pred             HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCH---HHHH--HHHHHHHCCCCCCEEEEEECCCHHHHH
T ss_conf             98755980799857999999999999999849898889988967---8999--999999669999859999889999999


Q ss_pred             HHCCCC
Q ss_conf             752854
Q gi|254780420|r  292 LALGAQ  297 (396)
Q Consensus       292 ~a~G~~  297 (396)
                      .---+.
T Consensus       225 ~i~~G~  230 (271)
T cd06312         225 AIKAGY  230 (271)
T ss_pred             HHHCCC
T ss_conf             998699


No 128
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS).  After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.91  E-value=0.44  Score=28.34  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             EECCCC-HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHH----HHHHHCCCCCCCCCCCCCC
Q ss_conf             304657-44644135788998588888410112110122210257863478610058----8787528544667767521
Q gi|254780420|r  233 VGAETS-YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQ----LLGLALGAQTVKMYQGHHG  307 (396)
Q Consensus       233 vp~~~~-~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ----~l~~a~G~~~~kl~~GhrG  307 (396)
                      +|.-.. +++|.++.||+++|-  --+|...   +.+.+.+.. .++.++|+|=|+|    .||..+|..-.++.+-.-|
T Consensus       120 iPv~ldia~di~e~cP~AwliN--ytNP~~~---vt~al~~~~-~~~k~vGLCh~~~~~~~~la~~Lg~~~~~v~~~~aG  193 (437)
T cd05298         120 IGPMIELIDDIEKYSPDAWILN--YSNPAAI---VAEALRRLF-PNARILNICDMPIAIMDSMAAILGLDRKDLEPDYFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEE--CCCHHHH---HHHHHHHHC-CCCCEEEECCCHHHHHHHHHHHHCCCHHHEEEEEEE
T ss_conf             9999999999998799928997--5787899---999999748-999889889788999999999958988991788961


Q ss_pred             CCCC
Q ss_conf             0112
Q gi|254780420|r  308 VNHP  311 (396)
Q Consensus       308 ~N~P  311 (396)
                      .||=
T Consensus       194 lNH~  197 (437)
T cd05298         194 LNHF  197 (437)
T ss_pred             CCHH
T ss_conf             0429


No 129
>KOG0292 consensus
Probab=87.89  E-value=0.59  Score=27.42  Aligned_cols=15  Identities=27%  Similarity=0.197  Sum_probs=6.3

Q ss_pred             EEEEECHHHHHHHHC
Q ss_conf             478610058878752
Q gi|254780420|r  280 MFGICLGHQLLGLAL  294 (396)
Q Consensus       280 ilGIClGhQ~l~~a~  294 (396)
                      ||--..||-++-.+-
T Consensus       457 IF~ag~g~lll~~~~  471 (1202)
T KOG0292         457 IFYAGTGNLLLRSPD  471 (1202)
T ss_pred             EEECCCCCEEEECCC
T ss_conf             366268518997498


No 130
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=87.80  E-value=0.93  Score=26.05  Aligned_cols=48  Identities=27%  Similarity=0.520  Sum_probs=35.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE-ECC----------------------CCHHHHHHCCCCEEEEC
Q ss_conf             77771499996796410232222202454133-046----------------------57446441357889985
Q gi|254780420|r  202 SDAKYHVVCIDYGIRSNLLRVLSSLGCRITIV-GAE----------------------TSYKDIMSLQPDGVLLS  253 (396)
Q Consensus       202 ~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vv-p~~----------------------~~~~~i~~~~pdgi~lS  253 (396)
                      +....|||++|+|    .|..|.++|+++.++ |..                      -++|.|-+.+||-||+|
T Consensus        55 pknPekVvv~D~g----aLD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIig  125 (320)
T COG4607          55 PKNPEKVVVLDLG----ALDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIG  125 (320)
T ss_pred             CCCCCEEEEECCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEC
T ss_conf             6887558995411----5666887297202236877863789971467866667535878899974499889977


No 131
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.65  E-value=0.61  Score=27.34  Aligned_cols=19  Identities=26%  Similarity=0.156  Sum_probs=11.9

Q ss_pred             CCCCCHHHHHHHCCCCEEC
Q ss_conf             2417989999742783211
Q gi|254780420|r  106 RANMHFDAWLKSCGIIGLS  124 (396)
Q Consensus       106 rs~~sL~~wL~~~~IpgI~  124 (396)
                      ..-..+.+||+++||-.+.
T Consensus        19 ~~a~~l~~~L~~rGi~v~~   37 (304)
T PRK02645         19 EAAERCAKQLEARGIKVLM   37 (304)
T ss_pred             HHHHHHHHHHHHCCCEEEE
T ss_conf             9999999999988899998


No 132
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.68  E-value=2.9  Score=22.56  Aligned_cols=144  Identities=18%  Similarity=0.260  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCC-CCCCHHHHHHHHHHCCCCCCCC-HHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68999999853984236632765-4589789888774158874321-011013333211168653445434434677777
Q gi|254780420|r  128 TRALTVWIRDYGVSNSVIAHHPD-GQFDLEDLKERAKNWSGLKGAE-LAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAK  205 (396)
Q Consensus       128 TRaLTk~IRe~G~~~a~I~~~~~-~~~d~~~~~~~~~~~~~~~~~d-L~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (396)
                      +..+-+.....|-....|+.--. ...++.++.++..-.|..+..| .+.+.....+|-|  .++....+.   ..+..+
T Consensus       480 ~~~~l~~aK~~GFSD~~Ia~l~~~~e~~vr~~R~~~~i~P~yK~VDTcA~EF~a~T~Y~Y--sTY~~e~e~---~~~~~~  554 (1068)
T PRK12815        480 SADLLRKAKEKGFSDRLIAELTGVTEEDVRELRKKLGIRPSFKMVDTCAAEFEAKTPYYY--STYFGESEA---KIPSEK  554 (1068)
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEE--EECCCCCCC---CCCCCC
T ss_conf             999999999849999999977099999999999976995589842774555467876377--634786777---688898


Q ss_pred             CEEEEEECC-------------CCCHHHHHHHHHCCCCEEEECC-----CC-------------HHHHH----HCCCCEE
Q ss_conf             149999679-------------6410232222202454133046-----57-------------44644----1357889
Q gi|254780420|r  206 YHVVCIDYG-------------IRSNLLRVLSSLGCRITIVGAE-----TS-------------YKDIM----SLQPDGV  250 (396)
Q Consensus       206 ~kIvvIDfG-------------iK~nIlr~L~~~g~~v~Vvp~~-----~~-------------~~~i~----~~~pdgi  250 (396)
                      ++|++|-.|             .=+ -++.|++.|.+.+++.+|     |+             .|+|+    ..+|+||
T Consensus       555 ~kvliLGsGP~RIGqgiEFDYc~vh-a~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~gV  633 (1068)
T PRK12815        555 KKVLILGSGPIRIGQGIEFDYMCVH-AAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKGV  633 (1068)
T ss_pred             CEEEEECCCCCEECCCCCCHHHHHH-HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCEE
T ss_conf             3499956787142244240025899-999999689748996278431236745577357536879999999998589979


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9858888841011211012221025786347861
Q gi|254780420|r  251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       251 ~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      +++=|==.|       .++...+.+.++||||--
T Consensus       634 ivqfGGQt~-------lnla~~L~~~gv~IlGts  660 (1068)
T PRK12815        634 IVQFGGQTA-------INLAKPLEEAGLPILGTS  660 (1068)
T ss_pred             EEECCCCCH-------HHHHHHHHHCCCEEECCC
T ss_conf             996488236-------799999997699498278


No 133
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=86.45  E-value=1.2  Score=25.19  Aligned_cols=48  Identities=10%  Similarity=0.232  Sum_probs=23.8

Q ss_pred             HHHHHCCCC----EEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHH
Q ss_conf             464413578----8998588888410112110122210-2578634786100588787
Q gi|254780420|r  240 KDIMSLQPD----GVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       240 ~~i~~~~pd----gi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~  292 (396)
                      ++++.-+||    +||-+|   |.....  ....++.. +.++++|.|+-..-+.+..
T Consensus       173 ~~~L~~~pd~~~~ai~~~n---d~~a~G--a~~Al~~~G~~~~v~v~G~D~~~~~~~~  225 (273)
T cd06305         173 EAVLKKYPKGGIDAIWAAW---DEFAKG--AKQALDEAGRTDEIKIYGVDISPEDLQL  225 (273)
T ss_pred             HHHHHHCCCCCEEEEEECC---CHHHHH--HHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf             9999738887627999358---578999--9999997699999489997899899999


No 134
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.28  E-value=1.1  Score=25.63  Aligned_cols=36  Identities=22%  Similarity=0.154  Sum_probs=22.0

Q ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCH
Q ss_conf             36664046544345524179899997427832112576
Q gi|254780420|r   91 VGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDT  128 (396)
Q Consensus        91 ~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDT  128 (396)
                      .|+|.+..  .+.-.+.-..|.+||.++++-.+-.-+|
T Consensus         8 Vgiv~k~~--~~~~~~~~~~l~~~L~~~g~~v~~e~~~   43 (291)
T PRK02155          8 VALVGRYQ--TPGIAEPLEALAACIAKRGFEVVFEADT   43 (291)
T ss_pred             EEEEECCC--CHHHHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf             99991489--8689999999999999788999995557


No 135
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.94  E-value=1.7  Score=24.26  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=13.4

Q ss_pred             HCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             42783211257-----6899999985398
Q gi|254780420|r  117 SCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       117 ~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      +..|.||+|=.     |..|...|+..|-
T Consensus       113 ~~~iIaVTGTnGKTTTtsli~~iL~~~g~  141 (457)
T PRK01390        113 DAPFIAITGTNGKSTTTALIAHLLRQAGR  141 (457)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             89889992899649899999999997399


No 136
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain.  AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal.  AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=85.34  E-value=1.3  Score=25.07  Aligned_cols=59  Identities=17%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             EECCCCHHHHHHCCCCEEEECCCCCCCCCCC-CCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             3046574464413578899858888841011-211012221025786347861005887875
Q gi|254780420|r  233 VGAETSYKDIMSLQPDGVLLSNGPGDPAVTS-VYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       233 vp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~-~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      +..+.++++..  ++|.+++..|++.+.... ......+++....+..|.|||-|-.+||.|
T Consensus        53 i~~d~~~~~~~--~~D~livpgg~~~~~~~~~~~l~~~L~~~~~~~~~l~~ictG~~~LA~a  112 (187)
T cd03137          53 LVADAGLDALA--AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             EECCCCHHHCC--CCCEEEECCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHC
T ss_conf             95376533456--4699998898861102599999999999975386688753140988745


No 137
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.61  E-value=2.6  Score=22.89  Aligned_cols=30  Identities=13%  Similarity=0.188  Sum_probs=14.5

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             66404654434552417989999742783211257
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      +||...-..+.|.     .-...++.+||-|+.|+
T Consensus        79 ~vV~SPGI~~~~p-----~l~~a~~~gi~viseie  108 (476)
T PRK00141         79 IVVTSPGWRPDSP-----LLVDAQSAGLEVIGDVE  108 (476)
T ss_pred             EEEECCCCCCCCH-----HHHHHHHCCCCEEEHHH
T ss_conf             9998997899799-----99999987995771999


No 138
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125   This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=84.54  E-value=1.6  Score=24.39  Aligned_cols=73  Identities=18%  Similarity=0.293  Sum_probs=43.6

Q ss_pred             EEECCCCCHHHHHHHHHCCCCEEEECCCCHHH--HHHC-CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEEC
Q ss_conf             99679641023222220245413304657446--4413-5788998588888410112110122210-257863478610
Q gi|254780420|r  210 CIDYGIRSNLLRVLSSLGCRITIVGAETSYKD--IMSL-QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICL  285 (396)
Q Consensus       210 vIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~--i~~~-~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGICl  285 (396)
                      .+|+=-=+|.+|.|.++|.+|-++-|-++-..  -+.+ +|=--+|      +.     +.+.+++. -.-.|-+||||.
T Consensus        86 m~DLQ~drSlv~~LL~~G~DVYLiDWGyP~~~D~~ltLdDY~~~YI------~~-----cV~~i~~~~~~d~i~lLG~Cq  154 (367)
T TIGR01836        86 MLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYLTLDDYVNGYI------DK-----CVDYICRTSKLDQISLLGICQ  154 (367)
T ss_pred             CEEECCCCHHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHHHHHH------HH-----HHHHHHHHCCCCCCCEEEEEC
T ss_conf             0232488168888885698489960689873331140466676778------99-----999998650789610431431


Q ss_pred             HHHHHHHHC
Q ss_conf             058878752
Q gi|254780420|r  286 GHQLLGLAL  294 (396)
Q Consensus       286 GhQ~l~~a~  294 (396)
                      |= .+++-|
T Consensus       155 GG-TfsL~y  162 (367)
T TIGR01836       155 GG-TFSLCY  162 (367)
T ss_pred             CH-HHHHHH
T ss_conf             04-789999


No 139
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.52  E-value=1.5  Score=24.67  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=23.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHH
Q ss_conf             5788998588888410112110122210-257863478610058878
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~  291 (396)
                      ++|+||-.|   |+....  +...++.. +.+++.|.|+.-.-+.+.
T Consensus       190 ~i~aI~a~n---D~~A~G--a~~Al~~aG~~~~v~vvG~Dg~~~~l~  231 (288)
T cd01538         190 KVDGVLAAN---DGTAGG--AIAALKAAGLAGKPPVTGQDAELAAVQ  231 (288)
T ss_pred             CCCEEEECC---CHHHHH--HHHHHHHCCCCCCCEEEECCCCHHHHH
T ss_conf             575898558---567799--999999749999873983599899999


No 140
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.10  E-value=3  Score=22.41  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=13.6

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             66404654434552417989999742783211257
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      +||...-..++|.     .-...++.+||-++.++
T Consensus        73 ~vV~SPGI~~~~p-----~l~~a~~~gi~i~~eie  102 (487)
T PRK03369         73 LVVTSPGFPPTAP-----VLAAAAAAGVPIWGDVE  102 (487)
T ss_pred             EEEECCCCCCCCH-----HHHHHHHCCCCEEEHHH
T ss_conf             8998995799899-----99999988990765999


No 141
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus.   PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source.  Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=83.26  E-value=2  Score=23.65  Aligned_cols=58  Identities=24%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             ECCCCHHHHHHCCCCEEEECCCCCCCCCCC-CCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             046574464413578899858888841011-211012221025786347861005887875
Q gi|254780420|r  234 GAETSYKDIMSLQPDGVLLSNGPGDPAVTS-VYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       234 p~~~~~~~i~~~~pdgi~lSnGPGdP~~~~-~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      ..+.++++..  ++|.|++..|+|...... ......+++....+..|.+||-|--+||.|
T Consensus        52 ~~d~~~~~~~--~~D~lvvpGg~~~~~~~~~~~l~~~Lr~~~~~g~~i~siCtGa~~LA~a  110 (183)
T cd03139          52 LPDTSFADPP--DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             ECCCCHHHCC--CCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
T ss_conf             6058844667--5899998799874530489899999999876198389873767999974


No 142
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=82.71  E-value=2.8  Score=22.65  Aligned_cols=53  Identities=9%  Similarity=0.139  Sum_probs=29.2

Q ss_pred             HHHHHCCC--CEEEECCCCCCCCCCCCCCHHHHHH-HCCCCCCEEEEECHHHHHHHHCCCCC
Q ss_conf             46441357--8899858888841011211012221-02578634786100588787528544
Q gi|254780420|r  240 KDIMSLQP--DGVLLSNGPGDPAVTSVYSSPIICK-LVDSGMPMFGICLGHQLLGLALGAQT  298 (396)
Q Consensus       240 ~~i~~~~p--dgi~lSnGPGdP~~~~~~~~~~~~~-~~~~~iPilGIClGhQ~l~~a~G~~~  298 (396)
                      ++++.-+|  |+|| .|.++   ..  .+...++. -..+++-|.|.=+.++.+..-.-|++
T Consensus       220 e~iL~~~pdid~I~-g~~~~---a~--~Ai~al~~~g~~~~v~ivg~D~s~~~~~~Ik~G~i  275 (340)
T PRK10936        220 QELLERHPEIDYIA-GSAVA---AE--AAIGELRGRNLTDPVKLVSFYLSHQVYRGLKRGKV  275 (340)
T ss_pred             HHHHHHCCCCCEEE-ECCHH---HH--HHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCE
T ss_conf             99998499967998-07566---99--99999996088887499992699999999984977


No 143
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.69  E-value=1.9  Score=23.88  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=39.0

Q ss_pred             CCCEEEEEE--CCCCCH------HHHHHHHHCCCCEEE---ECCCCHH-------HHHH-C--CCCEEEECCCCCCCCCC
Q ss_conf             771499996--796410------232222202454133---0465744-------6441-3--57889985888884101
Q gi|254780420|r  204 AKYHVVCID--YGIRSN------LLRVLSSLGCRITIV---GAETSYK-------DIMS-L--QPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       204 ~~~kIvvID--fGiK~n------Ilr~L~~~g~~v~Vv---p~~~~~~-------~i~~-~--~pdgi~lSnGPGdP~~~  262 (396)
                      .+.+|+++-  -|....      ..+.|.+.+-.+.++   +.+.+.+       +++. +  ++|+||-.|.   ....
T Consensus       124 ~~~~v~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~i~iv~~~~~~~~~~~a~~~~~~lL~~~~~~i~~I~~~nd---~~a~  200 (275)
T cd06317         124 GKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLDTQPADWDREKAQVAMEALITKFGDDIDGVYAGDD---NMAR  200 (275)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCC---HHHH
T ss_conf             9961799937999859999999999999985887569888741477899999999998734575334405895---7899


Q ss_pred             CCCCHHHHHHH-CCCCCCEEEEECHHHHHHH
Q ss_conf             12110122210-2578634786100588787
Q gi|254780420|r  263 SVYSSPIICKL-VDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       263 ~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~  292 (396)
                      .  +...+++. +.++++|.|+-..-+.+..
T Consensus       201 G--a~~Al~~~G~~~~v~vvg~d~~~~~~~~  229 (275)
T cd06317         201 G--ALNAAKEAGLAGGIVIVGANNFAVGYEA  229 (275)
T ss_pred             H--HHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf             9--9999997499899879987980999999


No 144
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.37  E-value=4  Score=21.56  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=13.7

Q ss_pred             HCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             42783211257-----6899999985398
Q gi|254780420|r  117 SCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       117 ~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      +..++||+|=.     |..|..+|+..|-
T Consensus       104 ~~~iIaVTGTnGKTTTt~li~~iL~~~g~  132 (438)
T PRK03806        104 QAPIVAITGSNGKSTVTTLVGEMAKAAGV  132 (438)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99889994899848999999999986599


No 145
>PRK09701 D-allose transporter subunit; Provisional
Probab=82.32  E-value=1.7  Score=24.11  Aligned_cols=53  Identities=8%  Similarity=0.097  Sum_probs=29.4

Q ss_pred             HHHHHCCCC--EEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHHHCCCC
Q ss_conf             464413578--8998588888410112110122210-257863478610058878752854
Q gi|254780420|r  240 KDIMSLQPD--GVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGLALGAQ  297 (396)
Q Consensus       240 ~~i~~~~pd--gi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~a~G~~  297 (396)
                      ++++.-+||  +||-.|.+.   ...  +.+.++.. ..+++.+.|.-..-+.+..--.|+
T Consensus       208 ~~~L~a~Pdi~~I~~~nd~~---a~G--a~~Al~~aG~~~~i~vvG~D~~~~~~~~I~~G~  263 (311)
T PRK09701        208 TNVLQRNPNIKAIYCANDTM---AMG--VAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ  263 (311)
T ss_pred             HHHHHCCCCCCEEEECCCHH---HHH--HHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCC
T ss_conf             99995499976899779726---899--999999669999839999789999999998598


No 146
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=82.13  E-value=2.7  Score=22.81  Aligned_cols=90  Identities=22%  Similarity=0.379  Sum_probs=58.3

Q ss_pred             CEEEEE-----ECCCCCHHHHHHHHHCCCCEEEECCCCHHH-HHHCCCCEEEECCCCCCCCCCCCC------CHHHHHHH
Q ss_conf             149999-----679641023222220245413304657446-441357889985888884101121------10122210
Q gi|254780420|r  206 YHVVCI-----DYGIRSNLLRVLSSLGCRITIVGAETSYKD-IMSLQPDGVLLSNGPGDPAVTSVY------SSPIICKL  273 (396)
Q Consensus       206 ~kIvvI-----DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~-i~~~~pdgi~lSnGPGdP~~~~~~------~~~~~~~~  273 (396)
                      .||++.     +|-...| ++.|++.|++++-+..   .++ -+--+-|+|.|-+  |-|+.....      ..+.++++
T Consensus       246 ~rIAVA~D~AF~FyY~~n-l~~Lr~~GAelv~FSP---L~D~~lP~~~D~vYlgG--GYPElfA~~L~~n~~~~~~i~~~  319 (451)
T COG1797         246 VRIAVARDAAFNFYYPEN-LELLREAGAELVFFSP---LADEELPPDVDAVYLGG--GYPELFAEELSANESMRRAIKAF  319 (451)
T ss_pred             CEEEEEECCHHCCCCHHH-HHHHHHCCCEEEEECC---CCCCCCCCCCCEEEECC--CCHHHHHHHHHHCHHHHHHHHHH
T ss_conf             369998545100032999-9999977977998578---67777997788899689--77488999984479999999999


Q ss_pred             CCCCCCEEEEECHHHHHHHHC---CCCCCCC
Q ss_conf             257863478610058878752---8544667
Q gi|254780420|r  274 VDSGMPMFGICLGHQLLGLAL---GAQTVKM  301 (396)
Q Consensus       274 ~~~~iPilGIClGhQ~l~~a~---G~~~~kl  301 (396)
                      .+.+.||+|=|=|.-.|+..+   .++++.|
T Consensus       320 ~~~G~piyaECGGlMYL~~~le~~~G~~~~M  350 (451)
T COG1797         320 AAAGKPIYAECGGLMYLGESLEDADGDTYEM  350 (451)
T ss_pred             HHCCCCEEEECCCCEEEHHHEECCCCCEEEE
T ss_conf             8769945885155112101204268966543


No 147
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.91  E-value=1.8  Score=24.02  Aligned_cols=17  Identities=18%  Similarity=0.020  Sum_probs=9.2

Q ss_pred             CCCCCHHHHHHHCCCCE
Q ss_conf             24179899997427832
Q gi|254780420|r  106 RANMHFDAWLKSCGIIG  122 (396)
Q Consensus       106 rs~~sL~~wL~~~~Ipg  122 (396)
                      .....+.+||.++++-.
T Consensus        20 ~~a~~l~~~L~~~g~~v   36 (303)
T PRK03372         20 ESARRVVKQLGDAGIGV   36 (303)
T ss_pred             HHHHHHHHHHHHCCCEE
T ss_conf             99999999999788989


No 148
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1.  The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=81.86  E-value=4.6  Score=21.15  Aligned_cols=86  Identities=20%  Similarity=0.328  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCC------------CCCCCHHHHHHHCCCCCCEE
Q ss_conf             964102322222024541330465744644135788998588888410------------11211012221025786347
Q gi|254780420|r  214 GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAV------------TSVYSSPIICKLVDSGMPMF  281 (396)
Q Consensus       214 GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~------------~~~~~~~~~~~~~~~~iPil  281 (396)
                      |-++|+|-+=.+. ++=.+    .++.++...++|++++-+|=|--..            ........++.+.+.++||=
T Consensus        55 ~e~RNVLvESARI-aRG~I----~~l~~~~~~d~DaLiiPGGfGaAKNLs~fA~~g~~~~v~~~V~~~i~~f~~a~KPiG  129 (213)
T cd03133          55 GESRNVLVESARI-ARGNI----KDLAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIG  129 (213)
T ss_pred             CCHHHHHHHHHHH-HCCCC----CCHHHCCHHHCCEEEECCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCEE
T ss_conf             6017789899887-62585----564569986789899788514555310021058875698999999999998499999


Q ss_pred             EEECHHHHHHHHCCCCCCCCCCCC
Q ss_conf             861005887875285446677675
Q gi|254780420|r  282 GICLGHQLLGLALGAQTVKMYQGH  305 (396)
Q Consensus       282 GIClGhQ~l~~a~G~~~~kl~~Gh  305 (396)
                      -||..--+++..+|- -.|+..|+
T Consensus       130 ~iCIAP~l~a~vl~~-~~~~TiG~  152 (213)
T cd03133         130 AICIAPALAAKILGE-GVEVTIGN  152 (213)
T ss_pred             EECHHHHHHHHHCCC-CCEEECCC
T ss_conf             975789999998189-82896689


No 149
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.84  E-value=2.6  Score=22.94  Aligned_cols=68  Identities=10%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             HHHHHHHHCCCCEEE--ECCCCHH-------HHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECH
Q ss_conf             232222202454133--0465744-------64413--5788998588888410112110122210-2578634786100
Q gi|254780420|r  219 LLRVLSSLGCRITIV--GAETSYK-------DIMSL--QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLG  286 (396)
Q Consensus       219 Ilr~L~~~g~~v~Vv--p~~~~~~-------~i~~~--~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClG  286 (396)
                      ..+.|.+.|+.+.++  ..+.+.+       +++..  ++++||..|..   ...  .+...+++. ...++.|.|.-..
T Consensus       147 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~p~i~ai~~~~d~---~a~--Ga~~a~~~~G~~~~i~vvg~D~~  221 (277)
T cd06319         147 FKEAMKEAGCDLAGIRQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSD---RYQ--GALDAIATAGKTGKVLLICFDAE  221 (277)
T ss_pred             HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCH---HHH--HHHHHHHHCCCCCCEEEEECCCC
T ss_conf             9999987599767999608999999999999999738997689966988---999--99999997599998589963797


Q ss_pred             HHHHH
Q ss_conf             58878
Q gi|254780420|r  287 HQLLG  291 (396)
Q Consensus       287 hQ~l~  291 (396)
                      -+.+.
T Consensus       222 ~~~~~  226 (277)
T cd06319         222 PEFIE  226 (277)
T ss_pred             HHHHH
T ss_conf             99999


No 150
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.71  E-value=3.5  Score=22.00  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=11.4

Q ss_pred             CCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             783211257-----6899999985398
Q gi|254780420|r  119 GIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       119 ~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      .+.||+|=.     |..|...++..|-
T Consensus       111 ~~IaVTGTnGKTTTtsli~~iL~~~g~  137 (445)
T PRK04308        111 KVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             579994899837799999999997599


No 151
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=81.62  E-value=1.3  Score=25.02  Aligned_cols=81  Identities=26%  Similarity=0.386  Sum_probs=51.2

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHH----HHHH
Q ss_conf             023222220245413304657446441357889985888884101121101222102578634786100588----7875
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQL----LGLA  293 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~----l~~a  293 (396)
                      .+.+.|+...+-+.+      +++|.++.||+++|.  --+|+.   .+.+.+.+..  ++.++|||=+.|-    ||..
T Consensus       114 G~~~alRtIPv~lei------a~~i~e~~P~AwiiN--ytNP~~---ivteal~r~~--~~k~iGlC~~p~~~~~~la~~  180 (423)
T cd05297         114 GIFRALRTIPVLLDI------ARDIEELCPDAWLLN--YANPMA---ELTWALNRYT--PIKTVGLCHGVQGTAEQLAKL  180 (423)
T ss_pred             HHHHHHCCHHHHHHH------HHHHHHHCCCCEEEE--CCCHHH---HHHHHHHHHC--CCCEEEECCCHHHHHHHHHHH
T ss_conf             899986228999999------999998799838997--678889---9999999738--997898797769999999998


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             285446677675210112
Q gi|254780420|r  294 LGAQTVKMYQGHHGVNHP  311 (396)
Q Consensus       294 ~G~~~~kl~~GhrG~N~P  311 (396)
                      +|..-.++.+-.-|.||=
T Consensus       181 l~~~~~~v~~~~~GLNH~  198 (423)
T cd05297         181 LGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             HCCCHHHCEEEEECCCEE
T ss_conf             299889918999505446


No 152
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.24  E-value=2.2  Score=23.39  Aligned_cols=50  Identities=12%  Similarity=0.118  Sum_probs=26.8

Q ss_pred             HHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHHHCC
Q ss_conf             64413--5788998588888410112110122210-2578634786100588787528
Q gi|254780420|r  241 DIMSL--QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGLALG  295 (396)
Q Consensus       241 ~i~~~--~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~a~G  295 (396)
                      +++.-  +.++||-.|.+   ....  +...+++. ..++++|.|+.---+.+...-.
T Consensus       183 ~~L~~~p~i~~i~~~nD~---~a~G--a~~Al~~~G~~~~v~vvG~D~~~~~~~~i~~  235 (282)
T cd06318         183 DLLVAHPDINVVYSENDD---MALG--AMRVLAEAGKTDDVKVAAADGQKEALALIKG  235 (282)
T ss_pred             HHHHHCCCCEEEEECCCH---HHHH--HHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
T ss_conf             999758997099988967---9999--9999996699998299998988999999983


No 153
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.15  E-value=3.7  Score=21.79  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=17.5

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             66404654434552417989999742783211257
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      +||...-..++|.     +-.+.++++||-|+.+|
T Consensus        80 ~vV~SPGI~~~~p-----~~~~a~~~gi~i~~eie  109 (481)
T PRK01438         80 LVVTSPGWRPTHP-----LLAAAAEAGIPVWGDVE  109 (481)
T ss_pred             EEEECCCCCCCCH-----HHHHHHHCCCCEECHHH
T ss_conf             9998997899899-----99999986993861899


No 154
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.81  E-value=2  Score=23.71  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC
Q ss_conf             23666404654434552417989999742783211
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLS  124 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~  124 (396)
                      .-|+|.+..  .|.-+.....|.+||+++++-.+-
T Consensus         7 ~IgIi~k~~--~~~a~~~~~~l~~~L~~~g~~v~l   39 (292)
T PRK03378          7 CIGIVGHPR--HPTALTTHEMLYRWLCTKGYEVIV   39 (292)
T ss_pred             EEEEEEECC--CHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999995279--858999999999999978998998


No 155
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=80.49  E-value=5.1  Score=20.83  Aligned_cols=98  Identities=24%  Similarity=0.335  Sum_probs=61.0

Q ss_pred             EECCCCCHHHHHHHHHCCCCEEEECCCCHHHHH---HCCCCEEEECCCCCC-----CCCCCCCCHHHHHHHCCCCCCEE-
Q ss_conf             967964102322222024541330465744644---135788998588888-----41011211012221025786347-
Q gi|254780420|r  211 IDYGIRSNLLRVLSSLGCRITIVGAETSYKDIM---SLQPDGVLLSNGPGD-----PAVTSVYSSPIICKLVDSGMPMF-  281 (396)
Q Consensus       211 IDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~---~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~~~~~~iPil-  281 (396)
                      +|=.+-+.-++.|++.=---.|+---.+.+|-.   ..--|||++||==|.     |+..+  ..+.+.+...+++||+ 
T Consensus       228 ~d~~ltW~di~wlr~~w~~plvlKGIl~~eDA~~A~~~G~dgIiVSNHGGRQLD~apa~i~--~LpeI~~aV~~~~~V~~  305 (381)
T PRK11197        228 FDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSAR--ALPAIADAVKGDIAILA  305 (381)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHH--HHHHHHHHHCCCCEEEE
T ss_conf             5888999999999987299767852588999999996699889995776321567844899--99999998678973999


Q ss_pred             --EEECHHHHH-HHHCCCCCCCC---------CCCCCCCCC
Q ss_conf             --861005887-87528544667---------767521011
Q gi|254780420|r  282 --GICLGHQLL-GLALGAQTVKM---------YQGHHGVNH  310 (396)
Q Consensus       282 --GIClGhQ~l-~~a~G~~~~kl---------~~GhrG~N~  310 (396)
                        ||--|-.++ |+|+|++..=+         -.|..|..|
T Consensus       306 DgGiRrG~DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~  346 (381)
T PRK11197        306 DSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVAN  346 (381)
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHH
T ss_conf             68978668999999769988976759999877133889999


No 156
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.25  E-value=1.8  Score=24.04  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=23.4

Q ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCH
Q ss_conf             36664046544345524179899997427832112576
Q gi|254780420|r   91 VGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDT  128 (396)
Q Consensus        91 ~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDT  128 (396)
                      -|+|.+....  ........+.+||+++|+..+-.=++
T Consensus         4 iGIi~~~~~~--~a~~~a~~l~~~L~~~gi~v~l~~~~   39 (305)
T PRK02649          4 AGIIYNDGKP--LAVRTAEELQDKLEAAGWEVVRASSS   39 (305)
T ss_pred             EEEEECCCCH--HHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf             9999738998--99999999999999889999997441


No 157
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases.  It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=80.05  E-value=5.3  Score=20.74  Aligned_cols=86  Identities=24%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             EECCCCCHHHHHHHHHCCC-CEEEECCCCHHHH---HHCCCCEEEECCCCCC-----CCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf             9679641023222220245-4133046574464---4135788998588888-----41011211012221025786347
Q gi|254780420|r  211 IDYGIRSNLLRVLSSLGCR-ITIVGAETSYKDI---MSLQPDGVLLSNGPGD-----PAVTSVYSSPIICKLVDSGMPMF  281 (396)
Q Consensus       211 IDfGiK~nIlr~L~~~g~~-v~Vvp~~~~~~~i---~~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~~~~~~iPil  281 (396)
                      .|-..-+.-++.|++. .. -.|+--=.+.+|-   .+.--|||++||==|.     |+..+  ..+.+.+...+++||+
T Consensus       236 ~d~~ltW~di~wlr~~-w~~plilKGI~~~eDA~~A~~~G~dgIiVSNHGGRQLD~apa~i~--~LpeI~~aV~~~~~V~  312 (383)
T cd03332         236 SGPSLTWEDLAFLREW-TDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALD--ALPEIVEAVGDRLTVL  312 (383)
T ss_pred             CCCCCCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHH--HHHHHHHHHCCCCEEE
T ss_conf             7888998999999987-699853235689999999997599889980786344678832789--9999999847998499


Q ss_pred             ---EEECHHHHH-HHHCCCCCC
Q ss_conf             ---861005887-875285446
Q gi|254780420|r  282 ---GICLGHQLL-GLALGAQTV  299 (396)
Q Consensus       282 ---GIClGhQ~l-~~a~G~~~~  299 (396)
                         ||--|--++ |+|+||+..
T Consensus       313 ~DgGIRrG~DV~KAlALGA~~V  334 (383)
T cd03332         313 FDSGVRTGADIMKALALGAKAV  334 (383)
T ss_pred             EECCCCCHHHHHHHHHCCCCEE
T ss_conf             9799786799999997699989


No 158
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=80.04  E-value=2.4  Score=23.15  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             HHHHHCCC---CEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHH
Q ss_conf             46441357---88998588888410112110122210-257863478610058878
Q gi|254780420|r  240 KDIMSLQP---DGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       240 ~~i~~~~p---dgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~  291 (396)
                      ++++.-+|   |+||-.|   |+....  +...++.. +.++++|.|+=---..+-
T Consensus       202 e~~L~a~~~~id~V~a~N---D~mAlG--A~~Al~~aG~~~~v~V~G~Dg~~~al~  252 (330)
T PRK10355        202 ENALTANNNKIDAVVASN---DATAGG--AIQALSAQGLSGKVAISGQDADLAAIK  252 (330)
T ss_pred             HHHHHHCCCCEEEEEECC---CCHHHH--HHHHHHHCCCCCCCEEECCCCCHHHHH
T ss_conf             999960998516999899---714899--999999669999976990279989999


No 159
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=80.02  E-value=5.1  Score=20.85  Aligned_cols=94  Identities=18%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             CCCCCEEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             77771499996--796410232222202454133046574-464413578899858888841011211012221025786
Q gi|254780420|r  202 SDAKYHVVCID--YGIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGM  278 (396)
Q Consensus       202 ~~~~~kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~i  278 (396)
                      .+.+.||.++|  --+-..+...|...|+.|.+...-..+ +.+....||-|++-=..  |...+......+++.  .++
T Consensus         7 ~~~~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~l--p~~~Gl~l~~~lr~~--~~~   82 (240)
T PRK10710          7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLML--PGTDGLTLCREIRRF--SDI   82 (240)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCHHHHHCC--CCC
T ss_conf             9998879999298999999999999889999998999999999973799899987999--888776321122115--764


Q ss_pred             CEEEEECH----HHHHHHHCCCCCC
Q ss_conf             34786100----5887875285446
Q gi|254780420|r  279 PMFGICLG----HQLLGLALGAQTV  299 (396)
Q Consensus       279 PilGIClG----hQ~l~~a~G~~~~  299 (396)
                      ||+=+.--    .++.|+.+||.-|
T Consensus        83 piI~lta~~~~~~~~~al~~GAddY  107 (240)
T PRK10710         83 PIVMVTAKIEEIDRLLGLEIGADDY  107 (240)
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             6899816788899999998699876


No 160
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.79  E-value=2  Score=23.62  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=22.9

Q ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCH
Q ss_conf             36664046544345524179899997427832112576
Q gi|254780420|r   91 VGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDT  128 (396)
Q Consensus        91 ~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDT  128 (396)
                      .|+|.+..  .+.-+.....+.+||+++++-..-.=++
T Consensus         7 vgIv~k~~--~~~a~~~~~~l~~~L~~~gi~v~ld~~~   42 (296)
T PRK01231          7 IGLIGRLG--SSQVVETLRRLKRFLLDRHLHVILEEET   42 (296)
T ss_pred             EEEEEECC--CHHHHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf             99998489--8799999999999998788999993247


No 161
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain.  This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator.  ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal.  AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=79.72  E-value=3.1  Score=22.31  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             465744644135788998588888410112110122210257863478610058878752
Q gi|254780420|r  235 AETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       235 ~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      .+.++++..  .+|.+++-+|++.+..........+++..+....|.++|-|-.+||.|-
T Consensus        55 ~~~~~~~~~--~~D~liV~Gg~~~~~~~~~~~~~~L~~~~~~g~~v~svctGa~~LA~aG  112 (185)
T cd03136          55 PDAALEDAP--PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARAG  112 (185)
T ss_pred             CCCCHHHCC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCC
T ss_conf             676700167--6789998788880214799999999999870998998647999999818


No 162
>COG2403 Predicted GTPase [General function prediction only]
Probab=79.27  E-value=5.6  Score=20.57  Aligned_cols=29  Identities=14%  Similarity=0.141  Sum_probs=15.0

Q ss_pred             HHHHHCCCC--EECCCCH--------HHHHHHHHHCCCC
Q ss_conf             999742783--2112576--------8999999853984
Q gi|254780420|r  113 AWLKSCGII--GLSGIDT--------RALTVWIRDYGVS  141 (396)
Q Consensus       113 ~wL~~~~Ip--gI~GIDT--------RaLTk~IRe~G~~  141 (396)
                      +|+..-..|  .|.|+-|        |++.|.||+.|--
T Consensus       119 et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyr  157 (449)
T COG2403         119 ETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYR  157 (449)
T ss_pred             HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             776651485599997236655678889999999866982


No 163
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.12  E-value=2.9  Score=22.51  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=20.9

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC
Q ss_conf             23666404654434552417989999742783211
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLS  124 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~  124 (396)
                      --|+|.+.-..  .-......+.+||+++++-.+-
T Consensus         7 ~Igiv~k~~~~--~~~~~~~~l~~~L~~~g~~v~l   39 (296)
T PRK04539          7 NIGIVTRPNTP--DIQDTAHTLITFLKQHGFTVYL   39 (296)
T ss_pred             EEEEEEECCCH--HHHHHHHHHHHHHHHCCCEEEE
T ss_conf             89999708987--9999999999999978799999


No 164
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.80  E-value=2.5  Score=23.02  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHH
Q ss_conf             666404654434552417989999742783211257689
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRA  130 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRa  130 (396)
                      |+|.+....  .-+..-..+.+||.++|+-.+-.-++..
T Consensus         4 gIv~n~~k~--~a~~~a~~l~~~L~~~g~~v~ld~~~~~   40 (278)
T PRK03708          4 GIVARRDKE--EALKLAYRVYDFLKVSGYEVVVDSDTYE   40 (278)
T ss_pred             EEEEECCCH--HHHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf             999218998--9999999999999988998999747865


No 165
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=78.64  E-value=3.5  Score=22.02  Aligned_cols=40  Identities=13%  Similarity=0.042  Sum_probs=16.6

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHC---CCCCCEEEEECHHHHH
Q ss_conf             57889985888884101121101222102---5786347861005887
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLV---DSGMPMFGICLGHQLL  290 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~---~~~iPilGIClGhQ~l  290 (396)
                      ++|+||-.|..   ....  +...+++.=   ..++.|.|+.-.-+.+
T Consensus       185 ~i~ai~~~nd~---~a~G--a~~al~~~G~~~~~di~ivg~D~~~~~~  227 (273)
T cd06309         185 DIDAVYAHNDE---MALG--AIQAIKAAGKKPGKDIKIVSIDGTKDAF  227 (273)
T ss_pred             CCCEEEECCCH---HHHH--HHHHHHHCCCCCCCCEEEEEECCCHHHH
T ss_conf             88889867857---9999--9999998399999986999989999999


No 166
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.40  E-value=3.2  Score=22.30  Aligned_cols=43  Identities=7%  Similarity=0.121  Sum_probs=21.2

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHHH
Q ss_conf             5788998588888410112110122210-25786347861005887875
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~a  293 (396)
                      ++++||-.|.   .....  +...+++. +..++.|.|.-..-+.+..-
T Consensus       183 di~ai~~~nd---~~a~g--a~~al~~~g~~~~i~vvg~D~~~~~~~~i  226 (273)
T cd06310         183 DLKGIFGANE---GSAVG--AARAVRQAGKAGKVKVVGFDASPEQIDAL  226 (273)
T ss_pred             CCCEEEECCC---HHHHH--HHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf             8757984384---89999--99999977999993999989869999999


No 167
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica).   O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , .   Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=78.38  E-value=1.2  Score=25.37  Aligned_cols=88  Identities=20%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE--ECHHHHHHHHCCC-CCCCCCCCCCCCCCCCEECCCCEEEE
Q ss_conf             57889985888884101121101222102578634786--1005887875285-44667767521011234778970999
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI--CLGHQLLGLALGA-QTVKMYQGHHGVNHPVKNISNGTVEI  322 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI--ClGhQ~l~~a~G~-~~~kl~~GhrG~N~Pv~~~~t~kv~i  322 (396)
                      +.|.|=.|.|||=+-.....+.-..--.+..++|++||  |+||-.+++---. +..+++|        |--+.+|    
T Consensus        74 ~I~~IA~t~~PGL~g~L~vGat~Ar~La~~l~kPligv~H~~GH~~~~~l~~~~~~~~~P~--------~~LlVSG----  141 (337)
T TIGR00329        74 EIDLIAVTSGPGLGGALIVGATFARSLALSLDKPLIGVNHLLGHIYAPLLDTNLNQLQFPF--------VSLLVSG----  141 (337)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--------EEEEEEC----
T ss_conf             0257898558798514689999999998987289551457899998874147774536673--------1677754----


Q ss_pred             ECCCCCEEEEHHHCCCCCEEEEEECCC
Q ss_conf             614576157034369982899998899
Q gi|254780420|r  323 VSMNHGFAIDASSLPAGLEETHISLFD  349 (396)
Q Consensus       323 TsqNHg~~v~~~slp~~~~v~~~~~nD  349 (396)
                         .|...+...+. .+.++...++.|
T Consensus       142 ---GHT~~~~~~~~-~~~e~~geT~Dd  164 (337)
T TIGR00329       142 ---GHTQIIAVKGI-GDYEILGETLDD  164 (337)
T ss_pred             ---CEEEEEEEECC-CCEEEEEEEHHH
T ss_conf             ---01153223046-757898520224


No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.95  E-value=2.5  Score=23.00  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=49.4

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHH----HCCCCEEEEC--CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             67964102322222024541330465744644----1357889985--88888410112110122210257863478610
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIM----SLQPDGVLLS--NGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~----~~~pdgi~lS--nGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      |.|.+ -+-+.|...|++|+-+..+.+.+++.    +.+||.|.||  .+..-|. .. ..++.+++.-..++||+.=..
T Consensus        13 ~iG~~-iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~-~~-~~i~~l~~~g~~~i~v~vGG~   89 (119)
T cd02067          13 DIGKN-IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTL-MK-EVIEELKEAGLDDIPVLVGGA   89 (119)
T ss_pred             HHHHH-HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHH-HH-HHHHHHHHCCCCCCEEEEECC
T ss_conf             78999-9999999789989989999999999999997099999996220242689-99-999999976999985999899


Q ss_pred             H---HHHHHHHCCCCC
Q ss_conf             0---588787528544
Q gi|254780420|r  286 G---HQLLGLALGAQT  298 (396)
Q Consensus       286 G---hQ~l~~a~G~~~  298 (396)
                      -   .+.++...|+.-
T Consensus        90 ~~~~~~~~~~~~Gad~  105 (119)
T cd02067          90 IVTRDFKFLKEIGVDA  105 (119)
T ss_pred             CCCHHHHHHHHCCCCE
T ss_conf             8974399999869979


No 169
>PRK04759 consensus
Probab=77.78  E-value=3.3  Score=22.21  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCH
Q ss_conf             236664046544345524179899997427832112576
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDT  128 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDT  128 (396)
                      ..|+|.+-.  .+.-......+.+||.++++-..  +|.
T Consensus         7 ~I~Iv~k~~--~~~~~~~~~~l~~~L~~~g~~v~--vd~   41 (294)
T PRK04759          7 VIAIIGKPR--DQQAIQTHKELYHWLTSLGYTVF--IDD   41 (294)
T ss_pred             EEEEEEECC--CHHHHHHHHHHHHHHHHCCCEEE--ECH
T ss_conf             999994179--97999999999999986899999--916


No 170
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=77.66  E-value=2.3  Score=23.26  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHH----HHHHH
Q ss_conf             02322222024541330465744644135788998588888410112110122210257863478610058----87875
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQ----LLGLA  293 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ----~l~~a  293 (396)
                      .|.|.|+..-.-+.+      +++|..+.||+++|-  --+|...   +.+.+.+.. .++.+.|+|=+.|    .||..
T Consensus       112 G~~~alRtIPv~l~i------a~~i~e~cP~AwliN--ytNP~~i---vt~al~~~~-~~~k~vGLCh~~~~~~~~la~~  179 (425)
T cd05197         112 GTFSGLRQIPYVLDI------ARKXEKLSPDAWYLN--FTNPAGE---VTEAVRRYV-PPEKAVGLCNVPIGVMEIVAKL  179 (425)
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHHCCCEEEEE--CCCHHHH---HHHHHHHHC-CCCCEEEECCCHHHHHHHHHHH
T ss_conf             999998429999999------999998699808997--3787899---999999748-8884898586679999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             285446677675210112
Q gi|254780420|r  294 LGAQTVKMYQGHHGVNHP  311 (396)
Q Consensus       294 ~G~~~~kl~~GhrG~N~P  311 (396)
                      +|..-.++.+-.-|.||=
T Consensus       180 lg~~~~~i~~~~~GlNH~  197 (425)
T cd05197         180 LGESEEKVDWQYAGLNHG  197 (425)
T ss_pred             HCCCHHHCEEEEEEECCH
T ss_conf             499889967999976646


No 171
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=77.40  E-value=6.3  Score=20.20  Aligned_cols=75  Identities=20%  Similarity=0.368  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEECC-------------CCCHHHHHHHHHCCCCEEEECC-----CC-------------HHHHH----HCC
Q ss_conf             7777149999679-------------6410232222202454133046-----57-------------44644----135
Q gi|254780420|r  202 SDAKYHVVCIDYG-------------IRSNLLRVLSSLGCRITIVGAE-----TS-------------YKDIM----SLQ  246 (396)
Q Consensus       202 ~~~~~kIvvIDfG-------------iK~nIlr~L~~~g~~v~Vvp~~-----~~-------------~~~i~----~~~  246 (396)
                      +..+.+|++|-.|             .=+ -++.|++.|.+++++.+|     |+             .|.|+    ..+
T Consensus       550 ~~~~~kvlvlGsGp~rIGqgiEFDY~~v~-a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E~  628 (1063)
T PRK05294        550 PSDRKKVMILGGGPNRIGQGIEFDYCCVH-AALALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEK  628 (1063)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCHHHHHH-HHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             77886379965777320444230067999-99999965981589537811111565667614543688999999999758


Q ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             78899858888841011211012221025786347861
Q gi|254780420|r  247 PDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       247 pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |+||+++=|=-.       ..++...+.+.+++|||--
T Consensus       629 p~gvi~qfGGQt-------~~nla~~L~~~g~~ilGts  659 (1063)
T PRK05294        629 PKGVIVQFGGQT-------PLKLAKALEAAGVPILGTS  659 (1063)
T ss_pred             CCEEEEECCCCC-------HHHHHHHHHHCCCCEECCC
T ss_conf             987999738836-------7899999998799477788


No 172
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2.  This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=77.37  E-value=3.4  Score=22.10  Aligned_cols=82  Identities=28%  Similarity=0.424  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHH---HHCCCCEEEECCCCCC-----CCCCCCCCHHHHHHHCCCCCCEE---EEE
Q ss_conf             410232222202454133046574464---4135788998588888-----41011211012221025786347---861
Q gi|254780420|r  216 RSNLLRVLSSLGCRITIVGAETSYKDI---MSLQPDGVLLSNGPGD-----PAVTSVYSSPIICKLVDSGMPMF---GIC  284 (396)
Q Consensus       216 K~nIlr~L~~~g~~v~Vvp~~~~~~~i---~~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~~~~~~iPil---GIC  284 (396)
                      -+.-++.|++.----.|+--=.+.+|-   ...--|||++||=-|.     |+..+  ..+.+.+...+++||+   ||=
T Consensus       209 ~w~di~~lr~~~~lplilKGI~~~eDA~~A~~~G~dgIvVSNHGGRQLD~~p~~i~--~LpeI~~av~~~~~V~~DgGIR  286 (351)
T cd04737         209 SPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFD--SLPEIAEAVNHRVPIIFDSGVR  286 (351)
T ss_pred             CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH--HHHHHHHHHCCCCEEEECCCCC
T ss_conf             98999999986499853236677999999987499889977875123567604788--9999999866896499769867


Q ss_pred             CHHHHH-HHHCCCCCC
Q ss_conf             005887-875285446
Q gi|254780420|r  285 LGHQLL-GLALGAQTV  299 (396)
Q Consensus       285 lGhQ~l-~~a~G~~~~  299 (396)
                      -|--++ |+|+||+-.
T Consensus       287 ~G~DV~KALALGA~aV  302 (351)
T cd04737         287 RGEHVFKALASGADAV  302 (351)
T ss_pred             CHHHHHHHHHCCCCEE
T ss_conf             4689999997699889


No 173
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.21  E-value=3.1  Score=22.38  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=27.8

Q ss_pred             HHHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCC
Q ss_conf             464413--578899858888841011211012221025786347861005887875285
Q gi|254780420|r  240 KDIMSL--QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGA  296 (396)
Q Consensus       240 ~~i~~~--~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~  296 (396)
                      ++++.-  +.|+||-.|   |+....  +...++..=.+++.|.|+.-.-+.+..-..|
T Consensus       175 ~~~L~~~pdid~I~~~n---D~~a~G--a~~Al~~aG~~~v~v~g~Dg~~~~l~~I~~G  228 (272)
T cd06313         175 ETWLTKYPQLDGAFCHN---DSMALA--AYQIMKAAGRTKIVIGGVDGDPPAIQAVSDG  228 (272)
T ss_pred             HHHHHHCCCCCEEEECC---CHHHHH--HHHHHHHCCCCCCEEEEECCCHHHHHHHHCC
T ss_conf             99996499987899888---477899--9999997699986899978999999999859


No 174
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.19  E-value=3  Score=22.43  Aligned_cols=89  Identities=19%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             CCCEEEEEECCCCCHH--HH------HHHHHCCCCEEEECC--CC-------HHHHHHCCC--CEEEECCCCCCCCCCCC
Q ss_conf             7714999967964102--32------222202454133046--57-------446441357--88998588888410112
Q gi|254780420|r  204 AKYHVVCIDYGIRSNL--LR------VLSSLGCRITIVGAE--TS-------YKDIMSLQP--DGVLLSNGPGDPAVTSV  264 (396)
Q Consensus       204 ~~~kIvvIDfGiK~nI--lr------~L~~~g~~v~Vvp~~--~~-------~~~i~~~~p--dgi~lSnGPGdP~~~~~  264 (396)
                      .+-+|+++..+.....  -|      .|.+.+.+++|+...  ..       .++++.-+|  |+||-.|   |+.... 
T Consensus       125 ~~g~v~ii~~~~~~~~~~~R~~Gf~~~l~~~~p~i~iv~~~~~~~~~~a~~~~~~~L~~~Pdi~~I~~~n---d~~a~G-  200 (294)
T cd06316         125 GKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGIDGPSKAEDIANAMLTQNPDLKGIYAVW---DVPAEG-  200 (294)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC---CHHHHH-
T ss_conf             6880899975899768999999999999720897299984388888999999999997399988899868---636599-


Q ss_pred             CCHHHHHHHCCCCCCEEEEECHHHH-HHHHCCCC
Q ss_conf             1101222102578634786100588-78752854
Q gi|254780420|r  265 YSSPIICKLVDSGMPMFGICLGHQL-LGLALGAQ  297 (396)
Q Consensus       265 ~~~~~~~~~~~~~iPilGIClGhQ~-l~~a~G~~  297 (396)
                       +...++..=...++|.|+..|... +...-++.
T Consensus       201 -a~~Al~~aG~~~v~ivg~d~g~~~~~~~i~~G~  233 (294)
T cd06316         201 -VIAALRAAGRDDIKVTTVDLGLNVALDMAKGGN  233 (294)
T ss_pred             -HHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCC
T ss_conf             -999999819998379999589689999997799


No 175
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.01  E-value=2.7  Score=22.75  Aligned_cols=16  Identities=25%  Similarity=0.571  Sum_probs=9.0

Q ss_pred             HHHCCCCEEEECCCCC
Q ss_conf             4413578899858888
Q gi|254780420|r  242 IMSLQPDGVLLSNGPG  257 (396)
Q Consensus       242 i~~~~pdgi~lSnGPG  257 (396)
                      +..+.-||+++|---|
T Consensus       169 ~~~~~~DGlIvsTPTG  184 (290)
T PRK01911        169 LTSYWADGLIIATPTG  184 (290)
T ss_pred             EEEEECCEEEEECCCC
T ss_conf             8999536799967885


No 176
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.68  E-value=6.4  Score=20.14  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=13.3

Q ss_pred             HCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             42783211257-----6899999985398
Q gi|254780420|r  117 SCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       117 ~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      ...+.+|+|=+     |..+..+++..|-
T Consensus       109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~  137 (448)
T COG0771         109 EAPIVAITGTNGKTTTTSLIAHLLKAAGL  137 (448)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             99989997999628899999999985599


No 177
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein.  This group includes proteins similar to S. cerevisiae Ydr533c.  Ydr533c is upregulated in response to various stress conditions along with the heat shock family.  The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain.  Ydr533c protein is a homodimer.
Probab=76.41  E-value=3.5  Score=21.98  Aligned_cols=57  Identities=12%  Similarity=0.132  Sum_probs=40.9

Q ss_pred             CCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             657446441357889985888884101--121101222102578634786100588787
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      ..+++++...+||+||+-+|-|--.+.  +.....++..+.+.+.||-.||-|-=+|.-
T Consensus        84 t~~l~~v~~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaaLl~  142 (231)
T cd03147          84 IKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILAN  142 (231)
T ss_pred             CCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf             68956889878259998898853032423999999999999759979998068899761


No 178
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.11  E-value=4.9  Score=20.93  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=12.4

Q ss_pred             HHCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             742783211257-----6899999985398
Q gi|254780420|r  116 KSCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       116 ~~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      .+..+.||+|=.     |-.|...++..|.
T Consensus       100 ~~~~~IaITGTNGKTTTt~ll~~iL~~~g~  129 (418)
T PRK00683        100 QRYPSLGITGSTGKTTTILFLEHLLRTLGI  129 (418)
T ss_pred             CCCCEEEEECCCCCEEHHHHHHHHHHHCCC
T ss_conf             479879997689866099999999986799


No 179
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.30  E-value=2.4  Score=23.09  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH----CCCCEEEECCCCC
Q ss_conf             679641023222220245413304657446441----3578899858888
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMS----LQPDGVLLSNGPG  257 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~----~~pdgi~lSnGPG  257 (396)
                      |.|.| =|-+.|...|++|.-...+.+.+++.+    .++|.|.+|.=-|
T Consensus        13 d~G~~-iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g   61 (128)
T cd02072          13 AVGNK-ILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYG   61 (128)
T ss_pred             HHHHH-HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             78899-99999997897298479889999999999873999999823202


No 180
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=74.83  E-value=7.3  Score=19.74  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH---------CCCCCCCCHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf             576899999985398423663276545897898887741---------58874321011013333211168653445434
Q gi|254780420|r  126 IDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKN---------WSGLKGAELAKHVTVSQRRDWSEKIWKWGEET  196 (396)
Q Consensus       126 IDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~---------~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~  196 (396)
                      ...-++.+.||+.|. +|.|+-.|..  .++.+...+..         .|+..|+.....+.-| .+...+.+.      
T Consensus        93 ~h~~R~l~~Ik~~G~-~AG~v~NP~T--Pl~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~K-ir~~R~~id------  162 (216)
T TIGR01163        93 EHIHRLLQLIKELGA-KAGIVLNPAT--PLEALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEK-IRELRKMID------  162 (216)
T ss_pred             CCHHHHHHHHHHCCC-CEEEEECCCC--CHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHH-HHHHHHHHH------
T ss_conf             267999999997189-7068867999--987899898762989988760799884110578999-999999998------


Q ss_pred             CCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             43467777714999967964102322222024541330
Q gi|254780420|r  197 SFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       197 ~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                         +...+..--.-+|=|+|.+=.+.+.+-|+++-|--
T Consensus       163 ---~~~~~~~~~ieVDGGv~~~ni~~~~~AGAD~~VaG  197 (216)
T TIGR01163       163 ---KLELGLSILIEVDGGVNEDNIAEVAEAGADILVAG  197 (216)
T ss_pred             ---HHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             ---60279955899717989767999997589899983


No 181
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=74.63  E-value=2.4  Score=23.07  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH----CCCCEEEECCCCC
Q ss_conf             679641023222220245413304657446441----3578899858888
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMS----LQPDGVLLSNGPG  257 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~----~~pdgi~lSnGPG  257 (396)
                      |-|.| =+-+.|...|++|+-.+.+.+++++.+    .++|.|-+|.=-|
T Consensus        13 d~G~~-iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g   61 (122)
T cd02071          13 DRGAK-VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG   61 (122)
T ss_pred             HHHHH-HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             87799-99999997897699679988999999999973998999964655


No 182
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=74.62  E-value=7.4  Score=19.70  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=42.9

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             499996--796410232222202454133046574464413578899858888841011211012221025786347861
Q gi|254780420|r  207 HVVCID--YGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       207 kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ||+++|  --+-..+.+.|...|++|.....-..+-++++.+||-|+|--+-  |...+......+++  ...+||+=+.
T Consensus         3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~~~~DlvilDi~L--P~~dG~~l~~~iR~--~~~~PII~lt   78 (232)
T PRK10955          3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMM--PKKNGIDTLKALRQ--THQTPVIMLT   78 (232)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCEEEC--CCCCCEEEEE
T ss_conf             8999969899999999999888999999899999999964898999991899--98886723012440--7888789980


Q ss_pred             ----CHHHHHHHHCCCCCC
Q ss_conf             ----005887875285446
Q gi|254780420|r  285 ----LGHQLLGLALGAQTV  299 (396)
Q Consensus       285 ----lGhQ~l~~a~G~~~~  299 (396)
                          .-.++.|+..||.-|
T Consensus        79 a~~~~~d~i~~l~~GADDY   97 (232)
T PRK10955         79 ARGSELDRVLGLELGADDY   97 (232)
T ss_pred             CCCCHHHHHHHHHCCCCEE
T ss_conf             5567688999997697576


No 183
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=74.57  E-value=5  Score=20.90  Aligned_cols=43  Identities=19%  Similarity=0.170  Sum_probs=20.2

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHH--CCCCCCEEEEECHHHHHHHH
Q ss_conf             5788998588888410112110122210--25786347861005887875
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKL--VDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~--~~~~iPilGIClGhQ~l~~a  293 (396)
                      ++|+||-.|.   .....  +...+++.  ..+++.|.|...-.+.+..-
T Consensus       183 ~~~aI~~~nd---~~a~G--a~~al~~~g~~~~~i~v~G~D~~~~~~~~i  227 (272)
T cd06301         183 KIDAVVANND---EMALG--AIMALKAAGKSDKDVPVAGIDGTPDALAAV  227 (272)
T ss_pred             CCCEEEECCC---HHHHH--HHHHHHHCCCCCCCEEEEEECCCHHHHHHH
T ss_conf             7787995582---78999--999999869899987999989859999998


No 184
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=74.35  E-value=7.5  Score=19.66  Aligned_cols=17  Identities=29%  Similarity=0.630  Sum_probs=11.3

Q ss_pred             CCHHHHHHCCCCEEEEC
Q ss_conf             57446441357889985
Q gi|254780420|r  237 TSYKDIMSLQPDGVLLS  253 (396)
Q Consensus       237 ~~~~~i~~~~pdgi~lS  253 (396)
                      .|.|.+...+||-||+.
T Consensus       222 iS~E~l~~~dpD~I~v~  238 (297)
T PRK11411        222 ISLEQLLALNPDWLLVA  238 (297)
T ss_pred             CCHHHHHCCCCCEEEEE
T ss_conf             07999840499989999


No 185
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.78  E-value=7.7  Score=19.57  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=14.3

Q ss_pred             HHHHHHHCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             89999742783211257-----6899999985398
Q gi|254780420|r  111 FDAWLKSCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       111 L~~wL~~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      |...+.+..+.||+|=.     |..|...|+..|-
T Consensus       105 l~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  139 (450)
T PRK02472        105 LAYLISEAPIIGITGSNGKTTTTTLIAEMLNAGGQ  139 (450)
T ss_pred             HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             88875159789982799973199999999997499


No 186
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily.  LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=73.70  E-value=4.5  Score=21.20  Aligned_cols=48  Identities=13%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             HHHHHCCCC--EEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHH
Q ss_conf             464413578--8998588888410112110122210-2578634786100588787
Q gi|254780420|r  240 KDIMSLQPD--GVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       240 ~~i~~~~pd--gi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~  292 (396)
                      ++++.-+||  +||-.|.+   ....  +...++.. +.+++.|.|+..--+.+..
T Consensus       177 ~~~L~~~Pdi~~I~~~nd~---~a~G--a~~Al~~aG~~~~V~vvG~D~~~~~~~~  227 (298)
T cd06302         177 QELLKAYPDLKGIIGPTSV---GIPG--AARAVEEAGLKGKVAVTGLGLPNQMAPY  227 (298)
T ss_pred             HHHHHHCCCCCEEEECCCH---HHHH--HHHHHHHCCCCCCEEEEEECCCHHHHHH
T ss_conf             9999759991299978981---6999--9999996799998599996887999999


No 187
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=73.37  E-value=4.8  Score=21.05  Aligned_cols=82  Identities=29%  Similarity=0.373  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHCCC-CEEEECCCCHHHHH---HCCCCEEEECCCCCC---CCCCCCCCHHHHHHHCCCCCCEE---EEECH
Q ss_conf             1023222220245-41330465744644---135788998588888---41011211012221025786347---86100
Q gi|254780420|r  217 SNLLRVLSSLGCR-ITIVGAETSYKDIM---SLQPDGVLLSNGPGD---PAVTSVYSSPIICKLVDSGMPMF---GICLG  286 (396)
Q Consensus       217 ~nIlr~L~~~g~~-v~Vvp~~~~~~~i~---~~~pdgi~lSnGPGd---P~~~~~~~~~~~~~~~~~~iPil---GIClG  286 (396)
                      +.-++.|++. .. -.|+--=.+.+|..   +.--|||++||==|.   -........+.+.+.+.+++||+   ||=-|
T Consensus       161 w~~i~~l~~~-~~~p~i~KGi~~~~DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G  239 (299)
T cd02809         161 WDDLAWLRSQ-WKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRG  239 (299)
T ss_pred             HHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf             9999999986-699879972788999999998599889972887333688877899999999985467289971884753


Q ss_pred             HHHH-HHHCCCCCC
Q ss_conf             5887-875285446
Q gi|254780420|r  287 HQLL-GLALGAQTV  299 (396)
Q Consensus       287 hQ~l-~~a~G~~~~  299 (396)
                      .-++ |+|+||+..
T Consensus       240 ~Dv~KAlaLGA~~V  253 (299)
T cd02809         240 TDVLKALALGADAV  253 (299)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             68999997699889


No 188
>cd01139 TroA_f Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=72.96  E-value=7.8  Score=19.51  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=18.3

Q ss_pred             CCCHHHHHHCCCCEEEECCCCC
Q ss_conf             6574464413578899858888
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGPG  257 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGPG  257 (396)
                      ..+.|.|++++||-||++++.+
T Consensus       223 ~Vs~Eqil~wnPDvIii~~~~~  244 (342)
T cd01139         223 ELNAEYVIAANPEIIIATGGNW  244 (342)
T ss_pred             CCCHHHHHHHCCCEEEEECCCC
T ss_conf             4379998754888899967754


No 189
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.84  E-value=6  Score=20.33  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=16.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ++|+||-+|.   .....  +...+++.-...+.|.|.-
T Consensus       179 ~~~aI~~~nD---~~A~G--a~~al~~~g~~di~vvGfD  212 (267)
T cd06322         179 DLDGIFAFGD---DAALG--AVSAIKAAGRDNVKVIGFD  212 (267)
T ss_pred             CCCEEEECCC---HHHHH--HHHHHHHCCCCCCEEEEEC
T ss_conf             7748998187---99999--9999997599998899994


No 190
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain.  AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal.  AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=72.79  E-value=5.2  Score=20.79  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHCCCCEEEECCCCCCCCCCCC----CCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             465744644135788998588888410112----11012221025786347861005887875
Q gi|254780420|r  235 AETSYKDIMSLQPDGVLLSNGPGDPAVTSV----YSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       235 ~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~----~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      .+.++++..  ++|-+|+-++.|+|.....    .....+++....+..|.|||-|--+||.|
T Consensus        60 ~d~~~~~~~--~~D~livpg~~~~~~~~~~~~~~~l~~~L~~~~~~g~~i~sictGa~~LA~a  120 (195)
T cd03138          60 PDATLADVP--APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCCHHHCC--CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHHHHHHHC
T ss_conf             786844566--5688997576678630123369999999998665271784165899999973


No 191
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=72.49  E-value=8  Score=19.44  Aligned_cols=91  Identities=19%  Similarity=0.315  Sum_probs=40.4

Q ss_pred             CEEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             1499996--796410232222202454133046574-4644135788998588888410112110122210257863478
Q gi|254780420|r  206 YHVVCID--YGIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       206 ~kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      .||+++|  --+-..+...|...|++|..+..-..+ +.+...+||-|+|-=+-  |...+......+++. ...+||+=
T Consensus         4 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~L--P~~~G~~l~~~iR~~-~~~~pII~   80 (229)
T PRK11083          4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGL--PDISGFELCRQLRAF-HPALPVIF   80 (229)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHH-CCCCEEEE
T ss_conf             999999699999999999999889999998999999999971899899973889--998768899999970-89972999


Q ss_pred             EECH----HHHHHHHCCCCCC
Q ss_conf             6100----5887875285446
Q gi|254780420|r  283 ICLG----HQLLGLALGAQTV  299 (396)
Q Consensus       283 IClG----hQ~l~~a~G~~~~  299 (396)
                      +.--    ..+.|+..||.-|
T Consensus        81 lta~~~~~d~i~~l~~GADDY  101 (229)
T PRK11083         81 LTARSDEVDRLVGLEIGADDY  101 (229)
T ss_pred             EECCCCHHHHHHHHHCCCCEE
T ss_conf             836789899999997599877


No 192
>CHL00148 orf27 Ycf27; Reviewed
Probab=71.87  E-value=5.8  Score=20.46  Aligned_cols=93  Identities=26%  Similarity=0.330  Sum_probs=57.6

Q ss_pred             CCCCEEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             7771499996--796410232222202454133046574-4644135788998588888410112110122210257863
Q gi|254780420|r  203 DAKYHVVCID--YGIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMP  279 (396)
Q Consensus       203 ~~~~kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iP  279 (396)
                      +.|+||+++|  --+-..|...|.+.|++|..+..-..+ +.+...+||-|+|-=+-  |...+......+++  ...+|
T Consensus         4 ~~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~L--P~~dG~~l~~~iR~--~~~~P   79 (240)
T CHL00148          4 SSKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMM--PKLDGYGVCQEIRK--ESDVP   79 (240)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCEEEECCCC--CCCCC
T ss_conf             999829999398999999999999789999998999999999974799999997999--98886630541403--79954


Q ss_pred             EEEEE----CHHHHHHHHCCCCCC
Q ss_conf             47861----005887875285446
Q gi|254780420|r  280 MFGIC----LGHQLLGLALGAQTV  299 (396)
Q Consensus       280 ilGIC----lGhQ~l~~a~G~~~~  299 (396)
                      |+=+.    .-.++.|+.+||.-|
T Consensus        80 II~LTa~~~~~d~v~gl~~GADDY  103 (240)
T CHL00148         80 IIMLTALGDVSDRITGLELGADDY  103 (240)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             899816789899999997699789


No 193
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.86  E-value=3.3  Score=22.14  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH----CCCCEEEECC--CCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             679641023222220245413304657446441----3578899858--888841011211012221025786347861
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMS----LQPDGVLLSN--GPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~----~~pdgi~lSn--GPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      |-|.| =|-+.|...|++|+-...+.+.+++.+    .+.|.|.+|.  |-... .+.. .....++.-...+|++.=.
T Consensus        17 d~G~~-iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~G~~~~-~~~~-l~~~l~~~g~~di~vvvGG   92 (137)
T PRK02261         17 AVGNK-ILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEI-DCRG-LREKCIEAGLGDILLYVGG   92 (137)
T ss_pred             HHHHH-HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH-HHHH-HHHHHHHCCCCCCEEEECC
T ss_conf             78899-999999978974984688799999999998739999997111126612-7999-9999996799999699836


No 194
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.39  E-value=8.1  Score=19.41  Aligned_cols=49  Identities=8%  Similarity=0.037  Sum_probs=23.1

Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             6998289999889980872686799778983487887767001689999999999735
Q gi|254780420|r  336 LPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRK  393 (396)
Q Consensus       336 lp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k  393 (396)
                      +|.++.+...   |++..+ ..-.-++-+|+..|+.-     +..-++-.+++|+..+
T Consensus       204 vp~disiigf---d~~~~~-~~~~p~ltti~~~~~~~-----g~~a~~~l~~~i~~~~  252 (268)
T cd06289         204 PGRDIAVVGF---DDVAEA-ALATPALTTVSTDPREI-----GRRAAELLLRRIADPD  252 (268)
T ss_pred             CCCCEEEEEE---CCHHHH-HHCCCCEEEEEECHHHH-----HHHHHHHHHHHHCCCC
T ss_conf             9985499995---787899-72289716998499999-----9999999999976989


No 195
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=71.31  E-value=6.8  Score=19.96  Aligned_cols=53  Identities=11%  Similarity=0.058  Sum_probs=29.7

Q ss_pred             HHHHHCCC--CEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHHHHHCCCC
Q ss_conf             46441357--88998588888410112110122210-257863478610058878752854
Q gi|254780420|r  240 KDIMSLQP--DGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLLGLALGAQ  297 (396)
Q Consensus       240 ~~i~~~~p--dgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l~~a~G~~  297 (396)
                      ++++.-+|  |+||-.|....+.     +...++.. ..+++.|.|+.+..+.+..---+.
T Consensus       171 ~~~L~~~pdi~~i~~~~~~~a~g-----a~~Al~~~g~~~~i~vvg~D~~~~~~~~i~~G~  226 (271)
T cd06314         171 EDALNAHPDLKCMFGLYAYNGPA-----IAEAVKAAGKLGKVKIVGFDEDPDTLQGVKEGT  226 (271)
T ss_pred             HHHHHHCCCCCEEEEECCCCHHH-----HHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCC
T ss_conf             99997589987899808851699-----999999847589967998789899999998299


No 196
>PRK13856 two-component response regulator VirG; Provisional
Probab=70.69  E-value=9  Score=19.09  Aligned_cols=90  Identities=21%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             CEEEEEEC--CCCCHHHHHHHHHCCCCEEEECCCCHHHH-HHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             14999967--96410232222202454133046574464-4135788998588888410112110122210257863478
Q gi|254780420|r  206 YHVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDI-MSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       206 ~kIvvIDf--GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i-~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      +||+++|=  -+-..+..+|...|++|.....-..+.+. ....||.++|--+..|-  .+......++.  ....|++=
T Consensus         2 ~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~--~Gl~~~~~ir~--~~~~piii   77 (241)
T PRK13856          2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGRE--DGLEIVRSLAT--KSDVPIII   77 (241)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCC--CCHHHHHHHCC--CCCCCEEE
T ss_conf             989999698999999999998779999998999999999865999999996999876--61345556403--69973699


Q ss_pred             EEC-----HHHHHHHHCCCCCC
Q ss_conf             610-----05887875285446
Q gi|254780420|r  283 ICL-----GHQLLGLALGAQTV  299 (396)
Q Consensus       283 ICl-----GhQ~l~~a~G~~~~  299 (396)
                      +.-     ..++.|+.+||.-|
T Consensus        78 lt~~~~~~~d~i~~l~~GADDY   99 (241)
T PRK13856         78 ISGDRLEEADKVVALELGATDF   99 (241)
T ss_pred             EECCCCCHHHHHHHHHCCCCEE
T ss_conf             9726787899999987699889


No 197
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=70.51  E-value=6.2  Score=20.22  Aligned_cols=86  Identities=21%  Similarity=0.265  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCC------------CCCHHHHHHHCCCCCCEE
Q ss_conf             96410232222202454133046574464413578899858888841011------------211012221025786347
Q gi|254780420|r  214 GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTS------------VYSSPIICKLVDSGMPMF  281 (396)
Q Consensus       214 GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~------------~~~~~~~~~~~~~~iPil  281 (396)
                      +-++|+|-+=.+. ++=.|    .++.++...++|++++-+|=|--....            ......++.+.+.++||=
T Consensus        58 ~e~RNVLvESARI-aRG~I----~~l~~~~~~d~DaLI~PGGfGaAKNLs~fA~~G~~~~V~p~V~~~i~~f~~a~KPiG  132 (217)
T PRK11780         58 AETRNVLVESARI-ARGEI----KDLAEADAEDFDALIVPGGFGAAKNLSNFAFKGAECSVDPEVKALARAFHQAGKPIG  132 (217)
T ss_pred             CHHHHHHHHHHHH-HCCCC----CCHHHCCHHHCCEEEECCCCHHHHCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCEE
T ss_conf             3247789999887-61586----674569975678799678620443110165349986487899999999998099989


Q ss_pred             EEECHHHHHHHHCCCCCCCCCCCC
Q ss_conf             861005887875285446677675
Q gi|254780420|r  282 GICLGHQLLGLALGAQTVKMYQGH  305 (396)
Q Consensus       282 GIClGhQ~l~~a~G~~~~kl~~Gh  305 (396)
                      -||.---+++..+|.. .|+..|+
T Consensus       133 ~iCIaP~l~a~vl~~~-~~~TiG~  155 (217)
T PRK11780        133 FICIAPAMLPKILGEG-VKLTIGN  155 (217)
T ss_pred             EECHHHHHHHHHCCCC-CEEECCC
T ss_conf             8607689999972888-4896578


No 198
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.19  E-value=9.2  Score=19.02  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=14.0

Q ss_pred             HHHCCCCEECCCC-----HHHHHHHHHHCCCC
Q ss_conf             9742783211257-----68999999853984
Q gi|254780420|r  115 LKSCGIIGLSGID-----TRALTVWIRDYGVS  141 (396)
Q Consensus       115 L~~~~IpgI~GID-----TRaLTk~IRe~G~~  141 (396)
                      ++..++.||+|=.     |..|..+|+..|--
T Consensus       101 ~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~  132 (450)
T PRK01368        101 SKNLKFIAITGTNGKSTTTALISHILNSNGLD  132 (450)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             67997799968999748999999999975996


No 199
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=70.12  E-value=9.3  Score=19.01  Aligned_cols=25  Identities=8%  Similarity=0.082  Sum_probs=9.6

Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             778983487887767001689999999999
Q gi|254780420|r  361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMH  390 (396)
Q Consensus       361 ~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~  390 (396)
                      ++-+|..+++.-     +..-++..+++|+
T Consensus       223 ~lTti~q~~~~~-----g~~A~~~l~~~i~  247 (266)
T cd06282         223 PLATVAQPNRDI-----GRQAVQRLLARIA  247 (266)
T ss_pred             CCEEEECCHHHH-----HHHHHHHHHHHHC
T ss_conf             967998699999-----9999999999977


No 200
>KOG1273 consensus
Probab=70.04  E-value=9.3  Score=18.99  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf             4654434552417989999742783211257689999998539842366327654
Q gi|254780420|r   97 AEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDG  151 (396)
Q Consensus        97 ~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~  151 (396)
                      ..|...|.|..-..+.   -.+|-..|++.|||.+.|.|-.+=-.-..++-.+++
T Consensus        26 a~~~~Fs~~G~~lAvG---c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg   77 (405)
T KOG1273          26 AECCQFSRWGDYLAVG---CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG   77 (405)
T ss_pred             CCEEEECCCCCEEEEE---CCCCCEEEEECCCCCHHHHHHCCCCCEEEEEECCCC
T ss_conf             3447763675536663---268728999711323666643033323677764778


No 201
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain.  FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2  is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=69.42  E-value=6.6  Score=20.05  Aligned_cols=86  Identities=27%  Similarity=0.383  Sum_probs=52.4

Q ss_pred             EECCCCCHHHHHHHHHCCCC-EEEECCCCHHHHH---HCCCCEEEECCCCCC-----CCCCCCCCHHHHHH---HCCCCC
Q ss_conf             96796410232222202454-1330465744644---135788998588888-----41011211012221---025786
Q gi|254780420|r  211 IDYGIRSNLLRVLSSLGCRI-TIVGAETSYKDIM---SLQPDGVLLSNGPGD-----PAVTSVYSSPIICK---LVDSGM  278 (396)
Q Consensus       211 IDfGiK~nIlr~L~~~g~~v-~Vvp~~~~~~~i~---~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~---~~~~~i  278 (396)
                      +|-..-+.-++.|++. ... .|+--=.+.+|-.   ..--|||++||==|.     |+..+  ..+.+.+   ...+++
T Consensus       196 ~~~~~tw~di~~lr~~-~~~plivKGIl~~~DA~~A~~~G~dgIiVSNHGGRqLD~~~~~i~--~Lp~I~~~~~av~~~~  272 (344)
T cd02922         196 IDPTLTWDDIKWLRKH-TKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIE--VLLEIRKHCPEVFDKI  272 (344)
T ss_pred             CCCCCCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHH--HHHHHHHHHHHHCCCE
T ss_conf             4888999999999986-699701002577999999996599889971886212578831899--9899999889858870


Q ss_pred             CEE---EEECHHHHH-HHHCCCCCC
Q ss_conf             347---861005887-875285446
Q gi|254780420|r  279 PMF---GICLGHQLL-GLALGAQTV  299 (396)
Q Consensus       279 Pil---GIClGhQ~l-~~a~G~~~~  299 (396)
                      ||+   ||--|.-++ |+|+|++-.
T Consensus       273 ~v~~DgGiR~G~DV~KAlALGA~aV  297 (344)
T cd02922         273 EVYVDGGVRRGTDVLKALCLGAKAV  297 (344)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf             8997188575789999997699989


No 202
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=68.82  E-value=7.9  Score=19.50  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=14.7

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEE
Q ss_conf             5788998588888410112110122210-25786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIC  284 (396)
                      ++|+||-.|   |.....  +...+++. ..+++.|.|+.
T Consensus       182 di~aI~a~n---D~~A~G--a~~Al~~aG~~~~i~vvg~D  216 (270)
T cd06308         182 DIDLVYAHN---DPMALG--AYLAAKRAGREKEIKFIGID  216 (270)
T ss_pred             CCCEEEECC---CHHHHH--HHHHHHHCCCCCCCEEEEEC
T ss_conf             888899778---658999--99999976999995899888


No 203
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=68.67  E-value=5.3  Score=20.72  Aligned_cols=17  Identities=12%  Similarity=0.282  Sum_probs=7.9

Q ss_pred             CCCCCEEEEECHHHHHH
Q ss_conf             57863478610058878
Q gi|254780420|r  275 DSGMPMFGICLGHQLLG  291 (396)
Q Consensus       275 ~~~iPilGIClGhQ~l~  291 (396)
                      .+++.|.|.-.--+.+.
T Consensus       208 ~~~v~vvg~d~~~~~~~  224 (268)
T cd06306         208 TDQIKIVSTYLSHAVYR  224 (268)
T ss_pred             CCCEEEEEECCCHHHHH
T ss_conf             99759999369989999


No 204
>cd01140 FatB Siderophore binding protein FatB.  These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=68.62  E-value=9.9  Score=18.79  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=16.5

Q ss_pred             CCCHHHHHHCCCCEEEECCC
Q ss_conf             65744644135788998588
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNG  255 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnG  255 (396)
                      ..+.|.+.+++||-||+.+.
T Consensus       193 ~is~E~l~~~dPDvI~v~~~  212 (270)
T cd01140         193 PVSFEYILEANPDWLFVIDR  212 (270)
T ss_pred             CCCHHHHHHHCCCEEEEEEC
T ss_conf             14787898739999999606


No 205
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.40  E-value=7.4  Score=19.68  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=15.8

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ++|+||-.|-   +....  +...+++.-..++.+.|+.
T Consensus       181 ~~~aifa~nD---~~A~G--a~~a~~~~G~~~i~ivg~d  214 (271)
T cd06321         181 KLDGVFAIND---PTAIG--ADLAAKQAGRNDIKITSVD  214 (271)
T ss_pred             CCCEEEECCC---HHHHH--HHHHHHHCCCCCCEEEEEE
T ss_conf             6778997786---89999--9999997597999899996


No 206
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=67.82  E-value=10  Score=18.69  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC-CCCH-HHHHHHHHHCCCCCE
Q ss_conf             89736845882342046533321023666404654434552417989999742783211-2576-899999985398423
Q gi|254780420|r   66 FPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLS-GIDT-RALTVWIRDYGVSNS  143 (396)
Q Consensus        66 ~P~IGNyGvn~~d~ES~~~~~~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~-GIDT-RaLTk~IRe~G~~~a  143 (396)
                      .|-+|++.-+  ++|..-. -+|   -+|+...       .....+.+-|++.+||... ..++ -.+-+.||.-|...+
T Consensus        73 v~~vG~~~~p--nlE~I~a-LkP---DLIi~~~-------~~~~~~~~~l~~~~i~v~~~~~~~~~~i~~~i~~lg~i~g  139 (289)
T TIGR03659        73 VPEVGNPMSP--DMEKIKS-LKP---TVVLSVT-------TLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYG  139 (289)
T ss_pred             CCCCCCCCCC--CHHHHHH-CCC---CEEEECC-------CCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             5721887899--9999973-699---7899557-------4258789999860975999837899999999999999838


No 207
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=67.07  E-value=9.2  Score=19.03  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=15.5

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      +||+||-.|   |.....  +...++..-..++.|.|.-
T Consensus       207 ~~~aIf~~n---D~~A~G--a~~al~~~G~~di~vvGfD  240 (295)
T PRK10653        207 DVQAVFAQN---DEMALG--ALRALQTAGKSDVMVVGFD  240 (295)
T ss_pred             CCCEEEECC---CHHHHH--HHHHHHHCCCCCCEEEEEC
T ss_conf             977899779---779999--9999998099983999289


No 208
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain.  The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=67.02  E-value=9.6  Score=18.88  Aligned_cols=55  Identities=15%  Similarity=0.096  Sum_probs=26.4

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC---CCCH---HHHHHHHHHCCCCCEEEECC
Q ss_conf             666404654434552417989999742783211---2576---89999998539842366327
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLS---GIDT---RALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~---GIDT---RaLTk~IRe~G~~~a~I~~~  148 (396)
                      |+|+.+. ..|..-+-...+.++++++|.-.+.   .-|-   +...+.+..++ .-|.|...
T Consensus         3 gvi~p~~-~~~f~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~-vDgiIi~~   63 (264)
T cd01537           3 GVLVPDL-DNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARG-VDGIIIAP   63 (264)
T ss_pred             EEEECCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf             9997889-7799999999999999986998999979999899999999999769-99999967


No 209
>TIGR01383 not_thiJ DJ-1 family protein; InterPro: IPR006287    These sequences represent the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by IPR006286 from INTERPRO, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras . Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ (thiamine pyridinylase), a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of Escherichia coli. The ThiJ designation for this family may be spurious; the cited paper  refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.   This group of proteins are classified as either DJ-1 putative peptidases or non-peptidase homologs in MEROPS peptidase family C56 (clan PC(C)). .
Probab=66.89  E-value=5.2  Score=20.78  Aligned_cols=89  Identities=22%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             CCC--CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCC-CCCCC-CCCCCCHHHHHHHCC
Q ss_conf             677--77714999967964102322222024541330465744644135788998588-88841-011211012221025
Q gi|254780420|r  200 KSS--DAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNG-PGDPA-VTSVYSSPIICKLVD  275 (396)
Q Consensus       200 ~~~--~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnG-PGdP~-~~~~~~~~~~~~~~~  275 (396)
                      +++  +.+-.++++++=-+.     |.=.+++=+.+-+|.+++++..-++|.|+|-+| ||--+ .-+....++++++.+
T Consensus        23 rRaelG~~Vt~~~v~~~~~~-----l~V~gs~gv~~~AD~~l~d~~~~~fD~ivLPGG~pGa~nL~~S~~l~~~lk~~~~   97 (186)
T TIGR01383        23 RRAELGIKVTVAIVGLNGSG-----LLVKGSRGVKILADASLEDVDDEEFDLIVLPGGMPGAENLRDSKLLENLLKKQES   97 (186)
T ss_pred             HHCCCCCEEEEEEEEECCCC-----CEEEEECCCEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf             21135870799997425897-----6046535627734871412577776778936982266642025789999999997


Q ss_pred             CCCCEEEEECHHHHHHHH
Q ss_conf             786347861005887875
Q gi|254780420|r  276 SGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       276 ~~iPilGIClGhQ~l~~a  293 (396)
                      .+.=|-.||=.==++..+
T Consensus        98 ~gkl~AAICAaP~vll~~  115 (186)
T TIGR01383        98 KGKLVAAICAAPIVLLAA  115 (186)
T ss_pred             CCCCEEEEHHHHHHHHHC
T ss_conf             499388420458986302


No 210
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=66.75  E-value=11  Score=18.54  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             65744644135788998588888410112110122210257863478610058878752
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      +.++++..  ..|-||+..|.+-....+.....-+++.......|-|||-|--+||.|-
T Consensus        65 d~~~~~~~--~~D~lvV~gg~~~~~~~~~~l~~wLr~~~~~g~~l~~vctGaf~LA~aG  121 (320)
T PRK09393         65 DGGLELLD--RADTIVIPGWRDPDEPVPEPLLKALRAAHARGARLCSICSGVFVLAAAG  121 (320)
T ss_pred             CCCHHHCC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCC
T ss_conf             87765657--6888998787772446998999999999875998999829999999738


No 211
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=66.23  E-value=7.6  Score=19.62  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=34.5

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCC-EECCCCEEEE
Q ss_conf             5788998588888410112110122210257863478610058878752854466776752101123-4778970999
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV-KNISNGTVEI  322 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv-~~~~t~kv~i  322 (396)
                      +-|+|..+.|||.=.-.-..+.-..--.+..++|++|||=   |-++|.+...   +.   +..-+| .|-.-+++|.
T Consensus        58 dld~Iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss---L~~~A~~~~~---~~---~~~v~v~idArr~~vY~  126 (220)
T COG1214          58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS---LEALAQGGAE---KN---AGFVLVAIDARRGEVYW  126 (220)
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECH---HHHHHHHHHC---CC---CCCEEEEEECCCCEEEE
T ss_conf             8488999308974223889999999998752986899576---9999863201---57---87437788426764785


No 212
>PRK11625 Rho-binding antiterminator; Provisional
Probab=66.07  E-value=11  Score=18.57  Aligned_cols=55  Identities=25%  Similarity=0.408  Sum_probs=33.5

Q ss_pred             EEEEECCCCEEEEEEECCCCEEEEE-EEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             6899728987999975676248888-985378888760141614256173216897368458
Q gi|254780420|r   14 AVLVLADGSVIEGMGCGATGSIQAE-ICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGV   74 (396)
Q Consensus        14 A~L~LedGt~f~G~~fG~~~~~~GE-vVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGv   74 (396)
                      -.|.|.||+.+.|++.--....--| +|.- .--+-||.=     ..+|+.||.|.||.+=|
T Consensus        26 L~leL~dGe~~~gkA~dl~trkkvEyLvie-~~g~~q~lR-----LD~I~sfshpe~G~vvv   81 (84)
T PRK11625         26 LTLELKDGEKLQAKASDLVSRKNVEYLVVE-AAGETRELR-----LDKIASFSHPEIGTVVV   81 (84)
T ss_pred             EEEEECCCCEEEEEEEEEEECCCCEEEEEE-ECCCEEEEE-----EEEEEECCCCCCCEEEE
T ss_conf             999994898999997366861671799998-148644677-----21453127877755996


No 213
>PRK08227 aldolase; Validated
Probab=65.39  E-value=7.1  Score=19.84  Aligned_cols=16  Identities=19%  Similarity=0.173  Sum_probs=7.2

Q ss_pred             CHHHHHHCCCCEEEEC
Q ss_conf             7446441357889985
Q gi|254780420|r  238 SYKDIMSLQPDGVLLS  253 (396)
Q Consensus       238 ~~~~i~~~~pdgi~lS  253 (396)
                      +.+|-+.+.-|+|-..
T Consensus       126 sVeeAvrlGAdAVsv~  141 (291)
T PRK08227        126 DMEDAVRLNVCAVAAQ  141 (291)
T ss_pred             CHHHHHHCCCCEEEEE
T ss_conf             4999986799789998


No 214
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=65.22  E-value=5.4  Score=20.63  Aligned_cols=48  Identities=21%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             CCCHHH----HHHHHHCCCC---EEEECCCCHHHHHHCC-CCEEEECCCCCCCCCC
Q ss_conf             641023----2222202454---1330465744644135-7889985888884101
Q gi|254780420|r  215 IRSNLL----RVLSSLGCRI---TIVGAETSYKDIMSLQ-PDGVLLSNGPGDPAVT  262 (396)
Q Consensus       215 iK~nIl----r~L~~~g~~v---~Vvp~~~~~~~i~~~~-pdgi~lSnGPGdP~~~  262 (396)
                      .-++|+    +.|.++|++.   .++--+.+++++++.. +|+|||.-|-|.|.-.
T Consensus       190 LpKei~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~~~YGfDAVFIgtGAG~pkl~  245 (462)
T TIGR01316       190 LPKEIVETEVKKLKKLGVKFRTDYLVGKTVTLEELLEKYGFDAVFIGTGAGLPKLL  245 (462)
T ss_pred             CCHHHHHHHHHHHHHCCEEEEECCEECCCHHHHHHHHHCCCCEEEEEECCCCCEEC
T ss_conf             87578898888763266379944375051128888875197079995068987001


No 215
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=65.04  E-value=8.7  Score=19.19  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=13.3

Q ss_pred             CCCEECCCCHHHHHH---HHHHCCCC
Q ss_conf             783211257689999---99853984
Q gi|254780420|r  119 GIIGLSGIDTRALTV---WIRDYGVS  141 (396)
Q Consensus       119 ~IpgI~GIDTRaLTk---~IRe~G~~  141 (396)
                      +...|+-+|+.+++.   +.++.|..
T Consensus        62 D~Iiv~p~d~~a~~~~l~~A~~aGIp   87 (272)
T cd06300          62 DAIIINPASPTALNPVIEEACEAGIP   87 (272)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE
T ss_conf             99999789767889999999985996


No 216
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=64.63  E-value=9.8  Score=18.83  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEEEE--CCCCCHHH------HHHHHHCCCCEEE---ECCCCH-------HHHHHC---CCCEEEECCCCCC
Q ss_conf             6777771499996--79641023------2222202454133---046574-------464413---5788998588888
Q gi|254780420|r  200 KSSDAKYHVVCID--YGIRSNLL------RVLSSLGCRITIV---GAETSY-------KDIMSL---QPDGVLLSNGPGD  258 (396)
Q Consensus       200 ~~~~~~~kIvvID--fGiK~nIl------r~L~~~g~~v~Vv---p~~~~~-------~~i~~~---~pdgi~lSnGPGd  258 (396)
                      ++++++..+++|-  -|....+.      ..|.+.+.++.++   +.+++.       ++++.-   +.|+||-.|   |
T Consensus       134 ~~g~gki~~vil~G~~g~~~~~~R~~Gf~~~l~~~~~~~~iv~~~~~~w~~~~a~~~~e~~L~~~~d~id~I~a~N---D  210 (303)
T cd01539         134 KNGDGIIQYVMLKGEPGHPDAIARTKYSIETLNDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVIANN---D  210 (303)
T ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC---C
T ss_conf             1688845799996899997899999869999985498015777871687889999999999985899735999789---4


Q ss_pred             CCCCCCCCHHHHHHH------CCCCCCEEEEECHHHHHHH
Q ss_conf             410112110122210------2578634786100588787
Q gi|254780420|r  259 PAVTSVYSSPIICKL------VDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       259 P~~~~~~~~~~~~~~------~~~~iPilGIClGhQ~l~~  292 (396)
                      +....  +...++..      ..++++|.|+=-.-+.+..
T Consensus       211 ~mAlG--A~~Al~~aG~~~~~~~~~I~VvG~Dg~~~~l~a  248 (303)
T cd01539         211 AMALG--AIEALQKYGYNKGDKSKNIPVVGVDALPEALEL  248 (303)
T ss_pred             HHHHH--HHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
T ss_conf             77999--999999759876667888679986799999999


No 217
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=64.55  E-value=11  Score=18.43  Aligned_cols=47  Identities=11%  Similarity=0.082  Sum_probs=19.5

Q ss_pred             HHHHHCCCCE---EEECCCCCCCCCCCCCCHHHHHHH--CCCCCCEEEEECHHHHH
Q ss_conf             4644135788---998588888410112110122210--25786347861005887
Q gi|254780420|r  240 KDIMSLQPDG---VLLSNGPGDPAVTSVYSSPIICKL--VDSGMPMFGICLGHQLL  290 (396)
Q Consensus       240 ~~i~~~~pdg---i~lSnGPGdP~~~~~~~~~~~~~~--~~~~iPilGIClGhQ~l  290 (396)
                      ++++.-+||.   +|++  -.|+....  +...++..  -..++-+.||+=--..+
T Consensus       184 ~~~L~a~pdi~~~~i~a--~ND~mAlG--A~~Al~~aGl~~~~v~vvgidg~~~~~  235 (289)
T cd01540         184 ASTLTKNPNVKNWIIYG--LNDETVLG--AVRATEQSGIAAADVIGVGINGSDAAD  235 (289)
T ss_pred             HHHHHHCCCCCCEEEEE--CCCHHHHH--HHHHHHHCCCCCCCEEEEEEECCCHHH
T ss_conf             99997589988439997--79668899--999999749988976999972882599


No 218
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II  (metal dependent) aldolase subfamilies.
Probab=64.41  E-value=8.2  Score=19.37  Aligned_cols=68  Identities=18%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             HHHHHHHCCCCEEEECCCC---HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf             3222220245413304657---44644135788998588888410112110122210257863478610058878
Q gi|254780420|r  220 LRVLSSLGCRITIVGAETS---YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       220 lr~L~~~g~~v~Vvp~~~~---~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~  291 (396)
                      .|.=.++|++++=++|..+   +.++.+-.|-.|+++.||+.....  .....+...++.+  --|+|+|-.+.-
T Consensus       149 aRia~ELGADiVKv~y~g~~e~f~~vv~~~~vPVviaGG~k~~~~~--~~L~~v~~a~~aG--a~Gv~~GRNvfQ  219 (235)
T cd00958         149 ARIGAELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKKDSEE--EFLKMVYDAMEAG--AAGVAVGRNIFQ  219 (235)
T ss_pred             HHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHH--HHHHHHHHHHHCC--CCEEEECCHHHC
T ss_conf             9999997899898239999899999997089989980899999999--9999999999769--956763641225


No 219
>pfam09897 DUF2124 Uncharacterized protein conserved in archaea (DUF2124). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=64.19  E-value=6.4  Score=20.13  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             HHHHHCCCCEEEECCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCC
Q ss_conf             464413578899858888841---0112110122210257863478610058878752854466776
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPGDPA---VTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ  303 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPGdP~---~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~  303 (396)
                      ++....+||.++|=+|=--|.   ..+ .+.+++.++..  ..|.|||+  |-+-...|. ..|+.|
T Consensus        74 ~~~~~~~~D~lVlmGGLAMP~~~vt~e-~v~~li~k~~~--~kviGvCF--ms~F~kagW-~~~IdF  134 (147)
T pfam09897        74 GENTDLNPDVLVLLGGLAMPKSGVTPE-DVKELIEKLNP--KKVIGVCF--MSMFEKAGW-DDKIDF  134 (147)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHCCC--CCEEEEEH--HHHHHHCCC-CCCCCC
T ss_conf             776789998999967655799998999-99999996499--87899974--998987699-876675


No 220
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=64.19  E-value=12  Score=18.21  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=16.0

Q ss_pred             CCHHHHHHCCCCEEEECCCCCC
Q ss_conf             5744644135788998588888
Q gi|254780420|r  237 TSYKDIMSLQPDGVLLSNGPGD  258 (396)
Q Consensus       237 ~~~~~i~~~~pdgi~lSnGPGd  258 (396)
                      -++|.|.+++||-|+.|.-.+|
T Consensus       106 pnlE~I~~l~PDLIi~~~~~~~  127 (319)
T PRK10957        106 PDAEAVAAQMPDLIVISATGGD  127 (319)
T ss_pred             CCHHHHHHCCCCEEEEECCCCC
T ss_conf             9999996079999998176650


No 221
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily.  Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=64.07  E-value=12  Score=18.34  Aligned_cols=45  Identities=7%  Similarity=-0.008  Sum_probs=21.4

Q ss_pred             HHHHCC--CCEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCEEEEECHHHHH
Q ss_conf             644135--788998588888410112110122210-25786347861005887
Q gi|254780420|r  241 DIMSLQ--PDGVLLSNGPGDPAVTSVYSSPIICKL-VDSGMPMFGICLGHQLL  290 (396)
Q Consensus       241 ~i~~~~--pdgi~lSnGPGdP~~~~~~~~~~~~~~-~~~~iPilGIClGhQ~l  290 (396)
                      +++..+  +++||..|..   ....  +...+++. +.+++.|.|.=.-.+.+
T Consensus       175 ~~L~~~pd~~ai~~~nD~---~A~G--a~~al~~~g~~~di~vvG~D~~~~~~  222 (275)
T cd06320         175 TILQRNPDLKAIYCNNDT---MALG--VVEAVKNAGKQGKVLVVGTDGIPEAY  222 (275)
T ss_pred             HHHHHCCCCCEEEECCCH---HHHH--HHHHHHHCCCCCCEEEEEECCCHHHH
T ss_conf             988628766779966988---9999--99999976999982999989769999


No 222
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=63.91  E-value=6.6  Score=20.04  Aligned_cols=111  Identities=19%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             EEEECC-CCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCC-----CCCCCH-HHHCCCCCCCCCEEEEEEEECC
Q ss_conf             997567-624888898537888876014161425617321689736-----845882-3420465333210236664046
Q gi|254780420|r   26 GMGCGA-TGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIG-----NVGVNS-EDFESISRKNFKGAVGLVIKAE   98 (396)
Q Consensus        26 G~~fG~-~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IG-----NyGvn~-~d~ES~~~~~~~~~~g~Iv~~~   98 (396)
                      |.|.|- .+-..+|||.-.+.--. |.+.+-+-.|.|+.|..|+.-     .||--- ........--+..+.|++||..
T Consensus         7 GgSv~Tp~~Gi~aeVv~v~s~~eL-~~~~~~~v~GKIVf~n~~m~~~~~g~~YG~~v~~R~~Ga~~Aak~GAva~liRSv   85 (134)
T cd04815           7 GGSVATPPEGITAEVVVVKSFDEL-KAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSI   85 (134)
T ss_pred             CCCCCCCCCCCEEEEEEECCHHHH-HHCCHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             787778988848989998899999-6168523486189993785467774521467776525299998569779999603


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCE--ECCCCHHHHHHHHHH
Q ss_conf             544345524179899997427832--112576899999985
Q gi|254780420|r   99 ITEPSNYRANMHFDAWLKSCGIIG--LSGIDTRALTVWIRD  137 (396)
Q Consensus        99 ~~~~Sn~rs~~sL~~wL~~~~Ipg--I~GIDTRaLTk~IRe  137 (396)
                      .....+.--..+..-=-...+||+  |+--|--.|-|.+..
T Consensus        86 ~t~~~~~PHTG~m~Y~~~v~kIPaaAiS~~dAd~L~rm~~~  126 (134)
T cd04815          86 GTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAAR  126 (134)
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCEEECCHHHHHHHHHHHHC
T ss_conf             67778989757612488999868696188759999999867


No 223
>pfam04848 Pox_A22 Poxvirus A22 protein.
Probab=63.30  E-value=6.7  Score=20.00  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=34.7

Q ss_pred             EEEEEECCCCCHHHHHHHHH------CCCCEEEECCCC-----HHHHHHCCCCEEEECCCC-CCCC
Q ss_conf             49999679641023222220------245413304657-----446441357889985888-8841
Q gi|254780420|r  207 HVVCIDYGIRSNLLRVLSSL------GCRITIVGAETS-----YKDIMSLQPDGVLLSNGP-GDPA  260 (396)
Q Consensus       207 kIvvIDfGiK~nIlr~L~~~------g~~v~Vvp~~~~-----~~~i~~~~pdgi~lSnGP-GdP~  260 (396)
                      .|+.+|-|+| |..+++.+.      -+++..+|++.+     +.++.+.+||-|+|---| +.|.
T Consensus         2 iIlSiDiGiK-NlA~c~~e~~~n~I~~~~v~~~d~~~d~~~~v~~d~~~~~~d~VLiEkQp~r~~~   66 (143)
T pfam04848         2 IICAIDIGTK-NPARTIIEIKDNKIKLIDISKLDWSSDWEYRVARDLYNYNYDVVLLERQGRRSPN   66 (143)
T ss_pred             EEEEEECCCC-CCEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             7999842777-7015899737984999986048988527999999974358998999607999984


No 224
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=63.16  E-value=8.4  Score=19.29  Aligned_cols=162  Identities=19%  Similarity=0.267  Sum_probs=87.7

Q ss_pred             CCCCCCCCHHHHHHHCCCCE----ECCCCHHHHH-------HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             45524179899997427832----1125768999-------999853984236632765458978988877415887432
Q gi|254780420|r  103 SNYRANMHFDAWLKSCGIIG----LSGIDTRALT-------VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGA  171 (396)
Q Consensus       103 Sn~rs~~sL~~wL~~~~Ipg----I~GIDTRaLT-------k~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~  171 (396)
                      |.+....=+.+-++....|+    +.+||-++|-       |.+++.|+. ..|..    ..|.+++++         +.
T Consensus        13 St~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~-~kv~~----ttd~~eAl~---------gA   78 (442)
T COG1486          13 STYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP-VKVEA----TTDRREALE---------GA   78 (442)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCC-EEEEE----ECCHHHHHC---------CC
T ss_conf             53147999989841755776669998387788999999999999963998-58999----458999844---------79


Q ss_pred             CHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH-----------HHHHHCCCCEEEECCCC-H
Q ss_conf             10110133332111686534454344346777771499996796410232-----------22220245413304657-4
Q gi|254780420|r  172 ELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLR-----------VLSSLGCRITIVGAETS-Y  239 (396)
Q Consensus       172 dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr-----------~L~~~g~~v~Vvp~~~~-~  239 (396)
                      |++   .++-..                  ++-+-++.-.--+.||.+++           .|+.       +|.-.. +
T Consensus        79 dfV---i~~~rv------------------G~l~~r~~De~IplkyG~~gqET~G~GGi~~glRt-------Ipvildi~  130 (442)
T COG1486          79 DFV---ITQIRV------------------GGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRT-------IPVILDIA  130 (442)
T ss_pred             CEE---EEEEEE------------------CCCCCCHHHHCCCHHHCCCCCCCCCCCHHHHHCCC-------CHHHHHHH
T ss_conf             889---998750------------------68430022311326417045446472078763024-------41999999


Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHH----HHHHHCCCCC-CCCCCCCCCCCCCC
Q ss_conf             4644135788998588888410112110122210257863478610058----8787528544-66776752101123
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQ----LLGLALGAQT-VKMYQGHHGVNHPV  312 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ----~l~~a~G~~~-~kl~~GhrG~N~Pv  312 (396)
                      +++.++.||+.+|-  --+|+.   .+.+.+.+... ++=+.|+|=|-|    .||..+|.+- ..+.+-.-|.||=+
T Consensus       131 ~~m~~~~P~Aw~lN--ytNPa~---~vTeAv~r~~~-~~K~VGlCh~~~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~  202 (442)
T COG1486         131 KDMEKVCPNAWMLN--YTNPAA---IVTEAVRRLYP-KIKIVGLCHGPIGIAMELAEVLGLEPREDLRYRVAGLNHMV  202 (442)
T ss_pred             HHHHHHCCCCEEEE--CCCHHH---HHHHHHHHHCC-CCCEEEECCCHHHHHHHHHHHHCCCCHHCEEEEEECCCHHH
T ss_conf             99998697747874--368699---99999998578-78789758845789999999958994321468995030244


No 225
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=63.10  E-value=11  Score=18.60  Aligned_cols=77  Identities=32%  Similarity=0.459  Sum_probs=44.7

Q ss_pred             HHHHHHHCCCC-EEEECCCCHHHH---HHCCCCEEEECCCCCC-----CCCCCCCCHHHHHHHCCCCCCEE---EEECHH
Q ss_conf             32222202454-133046574464---4135788998588888-----41011211012221025786347---861005
Q gi|254780420|r  220 LRVLSSLGCRI-TIVGAETSYKDI---MSLQPDGVLLSNGPGD-----PAVTSVYSSPIICKLVDSGMPMF---GICLGH  287 (396)
Q Consensus       220 lr~L~~~g~~v-~Vvp~~~~~~~i---~~~~pdgi~lSnGPGd-----P~~~~~~~~~~~~~~~~~~iPil---GIClGh  287 (396)
                      ++.|++. ..+ .++---.+.++.   .+.--|||++||==|.     |...+  ..+.+.+....++||+   ||.-|.
T Consensus       161 i~~l~~~-~~~PvivKGI~s~eDA~~a~~~Gv~~I~VSnHGGRqlD~~~~t~~--~L~eI~~~v~~~~~i~~DGGIR~G~  237 (301)
T pfam01070       161 LAWLRDQ-WKGPLVLKGILSPEDAKRAVEAGVDGIVVSNHGGRQLDGAPATID--ALPEIVAAVGGRIPVLVDGGIRRGT  237 (301)
T ss_pred             HHHHHHH-CCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH--HHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             9999986-699889982899999999998599999964998544688867999--9999999856774899638747626


Q ss_pred             HHH-HHHCCCCCC
Q ss_conf             887-875285446
Q gi|254780420|r  288 QLL-GLALGAQTV  299 (396)
Q Consensus       288 Q~l-~~a~G~~~~  299 (396)
                      -++ |+|+||+..
T Consensus       238 DV~KAlALGA~~V  250 (301)
T pfam01070       238 DVLKALALGADAV  250 (301)
T ss_pred             HHHHHHHCCCCEE
T ss_conf             8999998089866


No 226
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.22  E-value=13  Score=18.01  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             CCCEEEEEE-------CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH----CCCCEEEECCCCCC
Q ss_conf             771499996-------79641023222220245413304657446441----35788998588888
Q gi|254780420|r  204 AKYHVVCID-------YGIRSNLLRVLSSLGCRITIVGAETSYKDIMS----LQPDGVLLSNGPGD  258 (396)
Q Consensus       204 ~~~kIvvID-------fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~----~~pdgi~lSnGPGd  258 (396)
                      .++||++.-       -|+|- |-|.|...|++|+..+...+.+|+.+    .+.|.|.+|.=-|.
T Consensus        11 ~rprvlvak~GlDgHd~gakv-ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~   75 (143)
T COG2185          11 ARPRVLVAKLGLDGHDRGAKV-IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG   75 (143)
T ss_pred             CCCEEEEECCCCCCCCCCHHH-HHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf             986699953676544313199-99999857937981587589999999998647988999734404


No 227
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=61.78  E-value=8.3  Score=19.36  Aligned_cols=45  Identities=16%  Similarity=0.056  Sum_probs=22.7

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCC-CCEECCCCHHHHHH-HHHHCC
Q ss_conf             236664046544345524179899997427-83211257689999-998539
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCG-IIGLSGIDTRALTV-WIRDYG  139 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~-IpgI~GIDTRaLTk-~IRe~G  139 (396)
                      ++|+++...+..  |   ...+.-.|.+.+ +|-...-=|.+|.+ ++++++
T Consensus        67 vkgI~lTHgHeD--H---IGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~  113 (555)
T COG0595          67 VKGIFLTHGHED--H---IGALPYLLKQVLFAPIYASPLTAALIKEKLKEHG  113 (555)
T ss_pred             CEEEEECCCCHH--H---CCCHHHHHHCCCCCCEECCHHHHHHHHHHHHHHC
T ss_conf             139994687444--3---2346789852776844447766999998988732


No 228
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=61.46  E-value=9.7  Score=18.88  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             4464413578899858888841011211012221025786347861005887875
Q gi|254780420|r  239 YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       239 ~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      ++++.++.||+++|-  -.+|...   +.+.+.+.. .++.++|+|=++|-+...
T Consensus       128 a~~i~e~~P~AwliN--ytNP~~~---vt~al~r~~-~~~k~vGlCh~~~~~~~~  176 (183)
T pfam02056       128 AKDIEELCPDAWVLN--YTNPAAM---VTEAVYRRY-PNIKAVGLCHSPIGIEER  176 (183)
T ss_pred             HHHHHHHCCCCEEEE--CCCHHHH---HHHHHHHHC-CCCCEEEECCCHHHHHHH
T ss_conf             999999799838998--2788899---999999858-999889969877999999


No 229
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=61.43  E-value=13  Score=17.88  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             CEEEEEECCCCCHHH---HHHHHHCCCCEEEECCCC---HHHH----HHCCCCEEEEC
Q ss_conf             149999679641023---222220245413304657---4464----41357889985
Q gi|254780420|r  206 YHVVCIDYGIRSNLL---RVLSSLGCRITIVGAETS---YKDI----MSLQPDGVLLS  253 (396)
Q Consensus       206 ~kIvvIDfGiK~nIl---r~L~~~g~~v~Vvp~~~~---~~~i----~~~~pdgi~lS  253 (396)
                      +||..||||.|.--+   +.+...-.-+.+++....   .+.|    .+++|+.|++.
T Consensus         1 krvLgiD~G~kriG~Ai~D~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iviG   58 (99)
T smart00732        1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKYQPDLIVIG   58 (99)
T ss_pred             CCEEEEEECCCCEEEEEEECCCCEECCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9799992178969999998999732131899859826999999999998499889974


No 230
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.32  E-value=13  Score=17.87  Aligned_cols=10  Identities=50%  Similarity=0.753  Sum_probs=3.8

Q ss_pred             HHHHHHHCCC
Q ss_conf             3222220245
Q gi|254780420|r  220 LRVLSSLGCR  229 (396)
Q Consensus       220 lr~L~~~g~~  229 (396)
                      +++|.+.|++
T Consensus       114 ~~~L~~~G~~  123 (273)
T cd06292         114 VRHLVALGHR  123 (273)
T ss_pred             HHHHHHHCCC
T ss_conf             9999985998


No 231
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=60.49  E-value=14  Score=17.85  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             EEEEEEC-CCCCHHH----HHHHHHCCCCEEEECCC--------CHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             4999967-9641023----22222024541330465--------7446441--357889985888884101121101222
Q gi|254780420|r  207 HVVCIDY-GIRSNLL----RVLSSLGCRITIVGAET--------SYKDIMS--LQPDGVLLSNGPGDPAVTSVYSSPIIC  271 (396)
Q Consensus       207 kIvvIDf-GiK~nIl----r~L~~~g~~v~Vvp~~~--------~~~~i~~--~~pdgi~lSnGPGdP~~~~~~~~~~~~  271 (396)
                      -++++|| |+.-+..    +.|.+.|+++.|+.++.        .++.+..  ..|-++++|+.  ||....+.... +.
T Consensus        21 ~i~~~~y~gl~v~~~~~lR~~l~~~~~~~kVvKNtL~~~Al~~t~~~~l~~~l~G~~a~~f~~e--d~~~~aK~i~~-f~   97 (157)
T cd05797          21 SVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIAFSEE--DPVAAAKVLKD-FA   97 (157)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCHHHHCCCCEEEEEECC--CCCHHHHHHHH-HH
T ss_conf             7999976899689999999999976986999614999999861585312553667769999368--85388999999-98


Q ss_pred             HHCCCCCCEEEEECHHHHHHHHCCCCCCCCC
Q ss_conf             1025786347861005887875285446677
Q gi|254780420|r  272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMY  302 (396)
Q Consensus       272 ~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~  302 (396)
                      +-. .++=+.|-|+.-+++..+-=-..-|||
T Consensus        98 K~~-~~~~~~gg~~eg~~l~~~~i~~lakLP  127 (157)
T cd05797          98 KEN-KKLEIKGGVVEGKVLDAEEVKALAKLP  127 (157)
T ss_pred             HHC-CCCCEEEEEECCEECCHHHHHHHHCCC
T ss_conf             752-552012333257132899999997599


No 232
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=60.34  E-value=12  Score=18.28  Aligned_cols=69  Identities=23%  Similarity=0.374  Sum_probs=43.6

Q ss_pred             EEEECCCCCH---HHHHHHHHCCCCEEEECCCCHHHH-HHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             9996796410---232222202454133046574464-413578899858888841011211012221025786347861
Q gi|254780420|r  209 VCIDYGIRSN---LLRVLSSLGCRITIVGAETSYKDI-MSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       209 vvIDfGiK~n---Ilr~L~~~g~~v~Vvp~~~~~~~i-~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      -.-.|| |=.   +++.-.++|+++-|+|..+-+..+ ...+|+||+=       -++.....+-+..+....+|.+||-
T Consensus        66 ~C~~CG-~C~I~~l~~la~~~G~~v~i~~Ggt~~rkii~~~~p~~Iig-------VAC~~dL~~gi~~~~~~~ip~~gV~  137 (158)
T pfam01976        66 NCKECG-KCDIGDLKELAEEYGYKVYIVPGGTFAKKIIKEYRPKAIIG-------VACERDLNEGIQDLKKKGIPVQGVL  137 (158)
T ss_pred             CCCCCC-CCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEE-------EECHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             287899-98442799999980987999648289999998729998999-------9204899999998650899869997


Q ss_pred             C
Q ss_conf             0
Q gi|254780420|r  285 L  285 (396)
Q Consensus       285 l  285 (396)
                      +
T Consensus       138 l  138 (158)
T pfam01976       138 L  138 (158)
T ss_pred             C
T ss_conf             5


No 233
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=59.20  E-value=13  Score=18.01  Aligned_cols=50  Identities=14%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCC
Q ss_conf             14999967964102322222024541330465744644135788998588
Q gi|254780420|r  206 YHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNG  255 (396)
Q Consensus       206 ~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnG  255 (396)
                      ..+.+.-||--.+++..+.+.|+++.-+-+..+..+..+.-++.+.|-++
T Consensus       222 ~~~ilh~~g~~~~~l~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~i~Gn  271 (330)
T cd03465         222 GPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGN  271 (330)
T ss_pred             CCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEC
T ss_conf             98367407862879999986588889858889999999980999258817


No 234
>PRK13131 consensus
Probab=58.50  E-value=15  Score=17.54  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=16.5

Q ss_pred             EEEEECCCCCH--HHHHHHHHCCC-CEEEECCCCHHHHH
Q ss_conf             99996796410--23222220245-41330465744644
Q gi|254780420|r  208 VVCIDYGIRSN--LLRVLSSLGCR-ITIVGAETSYKDIM  243 (396)
Q Consensus       208 IvvIDfGiK~n--Ilr~L~~~g~~-v~Vvp~~~~~~~i~  243 (396)
                      +.+.|+-...+  +.+.+.+.|.. +-.+..+++.+.+.
T Consensus       119 vIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~  157 (257)
T PRK13131        119 VLIADMPLIEKELVIKSAQKHQIKQIFIASPNASVKDLE  157 (257)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf             655899967889999999977984799728999889999


No 235
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.14  E-value=15  Score=17.50  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             HHHHHCCCCEECCCC-----HHHHHHHHHHCCCCCEEE
Q ss_conf             999742783211257-----689999998539842366
Q gi|254780420|r  113 AWLKSCGIIGLSGID-----TRALTVWIRDYGVSNSVI  145 (396)
Q Consensus       113 ~wL~~~~IpgI~GID-----TRaLTk~IRe~G~~~a~I  145 (396)
                      .++.+.++.||+|=.     |-.|...|++.|- ...+
T Consensus       112 ~~~~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~-~~~~  148 (458)
T PRK01710        112 IKYCPAKVFGITGSDGKTTTTTLIYEMLKEEGY-KTWV  148 (458)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC-CEEE
T ss_conf             863758779993689847899999999998499-7585


No 236
>cd01141 TroA_d Periplasmic binding protein TroA_d.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.75  E-value=15  Score=17.46  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             46574464413578899858888841011211012221025786347861
Q gi|254780420|r  235 AETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       235 ~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      .+-++|.|++++||-||.+.+.. |..       .+.++-+.+||++-+.
T Consensus        58 ~~pn~E~ilaL~PDlVi~~~~~~-~~~-------~~~~L~~~gI~v~~~~   99 (186)
T cd01141          58 GSLNVELIVALKPDLVILYGGFQ-AQT-------ILDKLEQLGIPVLYVN   99 (186)
T ss_pred             CCCCHHHHHHHCCCEEEEECCCC-CHH-------HHHHHHHCCCCEEEEE
T ss_conf             89899999970999999958878-678-------9999996499579960


No 237
>PRK13117 consensus
Probab=56.13  E-value=16  Score=17.27  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=11.3

Q ss_pred             EEEEECCCCCH--HHHHHHHHCCC-CEEEECCCCHH
Q ss_conf             99996796410--23222220245-41330465744
Q gi|254780420|r  208 VVCIDYGIRSN--LLRVLSSLGCR-ITIVGAETSYK  240 (396)
Q Consensus       208 IvvIDfGiK~n--Ilr~L~~~g~~-v~Vvp~~~~~~  240 (396)
                      +.+.|+-.-.+  +...+.+.|.. +-+++.+++-+
T Consensus       126 vIipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~  161 (268)
T PRK13117        126 VLIADVPVEESAPFRQAAKKHGIAPIFICPPNADDD  161 (268)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             985799978858999999867983799847999999


No 238
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=55.57  E-value=16  Score=17.29  Aligned_cols=55  Identities=25%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEE--CC-----CCCHHHHHHHH----HCCCCEEEECCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             777771499996--79-----64102322222----02454133046574464413578899858888
Q gi|254780420|r  201 SSDAKYHVVCID--YG-----IRSNLLRVLSS----LGCRITIVGAETSYKDIMSLQPDGVLLSNGPG  257 (396)
Q Consensus       201 ~~~~~~kIvvID--fG-----iK~nIlr~L~~----~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPG  257 (396)
                      .-..++++.++|  ||     .|.|+=..|.+    ..+.+..+-+|.+-.-+++.  --|.|.|||.
T Consensus       128 aLs~RP~~LlLDEPFGALDAlTr~~LQe~L~~I~~e~~~T~~MvTHDvDEAllLsD--R~VMlTnGP~  193 (230)
T TIGR01184       128 ALSIRPKVLLLDEPFGALDALTRGNLQEELLQIVEEARVTVVMVTHDVDEALLLSD--RVVMLTNGPA  193 (230)
T ss_pred             HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC--CEEEEECCCC
T ss_conf             65317601231087405667526889999999873169748998524457888735--1024307774


No 239
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=55.41  E-value=15  Score=17.56  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC----HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             66404654434552417989999742783211257----68999999853984236632765458978988877415887
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID----TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGL  168 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID----TRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~  168 (396)
                      +|+.+--..|..  +..-..++..+.+|.+|-|--    |-+......+.|...  |+......    .+...       
T Consensus        42 lv~~Dd~~dp~~--a~~~a~kLv~~~~V~aviG~~~S~~~~a~~~i~~~~~ip~--is~~at~~----~lt~~-------  106 (332)
T cd06344          42 VVIANDGNDPEI--AKKVADELVKDPEILGVVGHYSSDATLAALDIYQKAKLVL--ISPTSTSV----KLSNP-------  106 (332)
T ss_pred             EEEECCCCCHHH--HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCEE--EECCCCCC----CCCCC-------
T ss_conf             999679999899--9999999973599279997888655788899998518457--75575775----33567-------


Q ss_pred             CCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEE-E----CCC--CCHHHHHHHHHCCCCEEEECCC----
Q ss_conf             4321011013333211168653445434434677777149999-6----796--4102322222024541330465----
Q gi|254780420|r  169 KGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCI-D----YGI--RSNLLRVLSSLGCRITIVGAET----  237 (396)
Q Consensus       169 ~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvI-D----fGi--K~nIlr~L~~~g~~v~Vvp~~~----  237 (396)
                        .+..-++...... +...+      ..+........+++++ |    ||.  .......|.++|-.+.+-+++.    
T Consensus       107 --~~~~Fr~~~~~~~-~~~~l------a~~~~~~~~~k~vai~~~~~~~yg~~~~~~f~~~~~~~gg~~v~~~~~~~~~d  177 (332)
T cd06344         107 --GPYFFRTVPSNAV-AARAL------AKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLSSPD  177 (332)
T ss_pred             --CCEEEEECCCHHH-HHHHH------HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             --7718992488689-99999------99999854898899999478647789999999999982995999987169899


Q ss_pred             -CH----HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             -74----464413578899858888841011211012221025786347861
Q gi|254780420|r  238 -SY----KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       238 -~~----~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                       ++    .++.+.+||.||+++.+++   ... ..... +....++|++|-.
T Consensus       178 ~d~~~~l~~i~~~~~d~i~~~~~~~~---~~~-~~~~~-~~~g~~~~l~g~~  224 (332)
T cd06344         178 FNANTAVSQAINNGATVLVLFPDTDT---LDK-ALEVA-KANKGRLTLLGGD  224 (332)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCHHH---HHH-HHHHH-HHCCCCCEEEECC
T ss_conf             79999999986379989999086788---999-99999-9769995599458


No 240
>cd01148 TroA_a Metal binding protein TroA_a.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=55.04  E-value=17  Score=17.16  Aligned_cols=18  Identities=17%  Similarity=0.510  Sum_probs=16.1

Q ss_pred             CCCHHHHHHCCCCEEEEC
Q ss_conf             657446441357889985
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLS  253 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lS  253 (396)
                      ..+.|.|.+++||-||+.
T Consensus       213 ~vs~E~i~~~nPDvIiv~  230 (284)
T cd01148         213 TVSWETVIARNPDVIVII  230 (284)
T ss_pred             CCCHHHHHHHCCCEEEEE
T ss_conf             348888877189989998


No 241
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=55.03  E-value=17  Score=17.15  Aligned_cols=68  Identities=18%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             HHHHHHHCCCCEEEECCCC---HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf             3222220245413304657---44644135788998588888410112110122210257863478610058878
Q gi|254780420|r  220 LRVLSSLGCRITIVGAETS---YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       220 lr~L~~~g~~v~Vvp~~~~---~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~  291 (396)
                      .|.=.++|++++=++|.-+   +.++.+-.|--|+++.||-.+...  .....++..++.+  -.|||+|-++.-
T Consensus       166 aRia~ELGADiVKv~y~gd~e~f~~vv~~~~vPVliaGG~k~~~~~--~~L~~v~~ai~aG--a~Gv~~GRNvfQ  236 (266)
T PRK07226        166 ARVGAELGADIIKTNYTGDPESFREVVEGCPVPVVIAGGPKTGSDL--EFLQMVEDAMEAG--AAGVAIGRNIFQ  236 (266)
T ss_pred             HHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHHHHHCC--CCEEEECCHHHC
T ss_conf             9999996799898359999899999998479878995788889889--9999999999759--946652610235


No 242
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=54.68  E-value=8.8  Score=19.18  Aligned_cols=40  Identities=15%  Similarity=-0.006  Sum_probs=22.3

Q ss_pred             CCCHHHHHHHC-C--CCEECCCCHHHHHHHHH-HCCCCCEEEECC
Q ss_conf             17989999742-7--83211257689999998-539842366327
Q gi|254780420|r  108 NMHFDAWLKSC-G--IIGLSGIDTRALTVWIR-DYGVSNSVIAHH  148 (396)
Q Consensus       108 ~~sL~~wL~~~-~--IpgI~GIDTRaLTk~IR-e~G~~~a~I~~~  148 (396)
                      +.=+..|-+++ |  |--+. -+|=.|..+|+ |++...+=+...
T Consensus        36 ~~i~~~Fek~~tgIkV~~v~-~~tgel~~rl~aEk~~p~aDV~~g   79 (334)
T TIGR03261        36 AKYKDAFEKVNPDIKINWVR-DSTGIITAKLLAEKNNPQADVVWG   79 (334)
T ss_pred             HHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             99999999777994899998-972999999996457998659984


No 243
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.53  E-value=10  Score=18.65  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=12.5

Q ss_pred             HHHHHCCCCEEEECCCCCC
Q ss_conf             4644135788998588888
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPGD  258 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPGd  258 (396)
                      +.+..+.-||+++|---|-
T Consensus       141 ~~~~~~r~DGlIVSTPTGS  159 (265)
T PRK04885        141 ELFERFRGDGLCVSTPTGS  159 (265)
T ss_pred             EEEEEEECCEEEEECCCCH
T ss_conf             9989995677999669851


No 244
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=54.18  E-value=12  Score=18.23  Aligned_cols=25  Identities=8%  Similarity=0.211  Sum_probs=14.0

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             666404654434552417989999742
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSC  118 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~  118 (396)
                      |+|++-..  +.+-.....+..||.++
T Consensus         3 giv~n~~~--~~a~~~~~~l~~~L~~~   27 (243)
T pfam01513         3 GIIVNPDK--VEAEERASELQRLLLDA   27 (243)
T ss_pred             EEEECCCC--HHHHHHHHHHHHHHHHC
T ss_conf             99987996--78999999999998864


No 245
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.48  E-value=18  Score=16.99  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=14.3

Q ss_pred             CCCEECCCC-----HHHHHHHHHHCCCCCEEE
Q ss_conf             783211257-----689999998539842366
Q gi|254780420|r  119 GIIGLSGID-----TRALTVWIRDYGVSNSVI  145 (396)
Q Consensus       119 ~IpgI~GID-----TRaLTk~IRe~G~~~a~I  145 (396)
                      ++.||+|=.     |-.|..+|+..|- ++.+
T Consensus       116 k~IaVTGTNGKTTTt~ll~~iL~~~g~-~~~~  146 (468)
T PRK04690        116 GAVCVTGTKGKSTTTALLAHLLRAAGH-RTAL  146 (468)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCC-CEEE
T ss_conf             789996998589999999999985799-8289


No 246
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.13  E-value=18  Score=16.95  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             CCHHHHHHHCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             7989999742783211257-----6899999985398
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      ..|-.|..+..|.||+|=.     |..|...|+..|.
T Consensus        99 iel~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~  135 (438)
T PRK04663         99 IELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV  135 (438)
T ss_pred             HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             8999764589789994899828999999999982899


No 247
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.76  E-value=18  Score=16.91  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=11.2

Q ss_pred             HHHCCCCEECCCC-----HHHHHHHHHHCC
Q ss_conf             9742783211257-----689999998539
Q gi|254780420|r  115 LKSCGIIGLSGID-----TRALTVWIRDYG  139 (396)
Q Consensus       115 L~~~~IpgI~GID-----TRaLTk~IRe~G  139 (396)
                      ++...+.||+|=.     |-.|..+++..|
T Consensus       106 ~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  135 (459)
T PRK02705        106 LKHIPWVGITGTNGKTTVTHLLAHILQAAG  135 (459)
T ss_pred             HCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             504975777178972789999999999839


No 248
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=52.65  E-value=18  Score=16.90  Aligned_cols=172  Identities=16%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHH----HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf             6664046544345524179899997427832112576899----999985398423663276545897898887741588
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRAL----TVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSG  167 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaL----Tk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~  167 (396)
                      -+|+.+.-..|.  ++.....+...+.+|.+|-|--+-..    ...+.+.|...-.-....+ .     +.       .
T Consensus        40 elv~~D~~~~p~--~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~s~~~-~-----~~-------~  104 (336)
T cd06360          40 EFVVEDDEAKPD--VAVEKARKLIEQDKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGAD-D-----LT-------G  104 (336)
T ss_pred             EEEEECCCCCHH--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCC-E-----EE-------C
T ss_conf             999867999989--9999999998549963885576707655333999850953431255553-2-----41-------2


Q ss_pred             CCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEE----CCC--CCHHHHHHHHHCCCCEEE---EC-CC
Q ss_conf             743210110133332111686534454344346777771499996----796--410232222202454133---04-65
Q gi|254780420|r  168 LKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCID----YGI--RSNLLRVLSSLGCRITIV---GA-ET  237 (396)
Q Consensus       168 ~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvID----fGi--K~nIlr~L~~~g~~v~Vv---p~-~~  237 (396)
                      ....+..-.++.... .+......      +.. .....+|+++.    ||.  -..+.+.|.+.|.+|.-.   |. .+
T Consensus       105 ~~~~~~~Fr~~~~~~-~~~~~~~~------~~~-~~~~~~vaiv~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~  176 (336)
T cd06360         105 RLCAPNFFRTSFSNA-QWAAPMGK------YAA-DDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTS  176 (336)
T ss_pred             CCCCCCEEEECCCHH-HHHHHHHH------HHH-HHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             578776687059859-99999999------999-8489869994687446699999999999973996999996589985


Q ss_pred             CHH----HHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE-ECHHHH
Q ss_conf             744----6441357889985888884101121101222102578634786-100588
Q gi|254780420|r  238 SYK----DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI-CLGHQL  289 (396)
Q Consensus       238 ~~~----~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI-ClGhQ~  289 (396)
                      ++.    .+.+.+||.|++...+.+-.   .........=+..++|++|- ++.-+.
T Consensus       177 Df~~~i~~~~~~~pd~v~~~~~~~~~~---~~~~q~~~~G~~~~~~~~g~~~~~~~~  230 (336)
T cd06360         177 DFASYLAQIPDDVPDAVFVFFAGGDAI---KFVKQYDAAGLKAKIPLIGSGFLTDGT  230 (336)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf             679999999876989999935660489---999999973998780699865447888


No 249
>PRK03670 competence damage-inducible protein A; Provisional
Probab=52.17  E-value=18  Score=16.98  Aligned_cols=11  Identities=36%  Similarity=0.845  Sum_probs=4.3

Q ss_pred             CCEEEECCCCC
Q ss_conf             78899858888
Q gi|254780420|r  247 PDGVLLSNGPG  257 (396)
Q Consensus       247 pdgi~lSnGPG  257 (396)
                      +|-||.|+|=|
T Consensus        61 ~d~Vi~tGGLG   71 (252)
T PRK03670         61 PEVLIISGGLG   71 (252)
T ss_pred             CCEEEECCCCC
T ss_conf             99999838827


No 250
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=51.83  E-value=19  Score=16.87  Aligned_cols=41  Identities=24%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             HHHHHCCCCE---EEECCCCHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             2222024541---3304657446441357889985888884101
Q gi|254780420|r  222 VLSSLGCRIT---IVGAETSYKDIMSLQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       222 ~L~~~g~~v~---Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~  262 (396)
                      .|.+.|+++.   .+--+.+++++++..+|+|||.-|-+.|...
T Consensus       498 ~l~~lGV~~~~n~~vGkdit~~eL~~egyDAVfla~Ga~~pr~l  541 (760)
T PRK12778        498 NLVKMGVTFEKDCIVGKTISVEELEEEGFKGIFVASGAGLPNFM  541 (760)
T ss_pred             HHHHCCCEEECCCEECCCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             99864979989957788689999975889999994067877528


No 251
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=51.74  E-value=19  Score=16.80  Aligned_cols=38  Identities=32%  Similarity=0.632  Sum_probs=24.7

Q ss_pred             CHHHHH----HCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             744644----135788998588888410112110122210257863478
Q gi|254780420|r  238 SYKDIM----SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       238 ~~~~i~----~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      ++++|.    +.++|-+|+  ||-+|-.     .-+...+.+.++|+||
T Consensus        49 d~~~i~~~~~~~~idlvii--GPE~pL~-----~Gl~D~l~~~gi~vfG   90 (99)
T pfam02844        49 DFEALADFAKEENIDLVVV--GPEAPLV-----AGIVDALRAAGIPVFG   90 (99)
T ss_pred             CHHHHHHHHHHCCCCEEEE--CCCHHHH-----HHHHHHHHHCCCEEEC
T ss_conf             7999999999819749998--9606778-----7889999868991799


No 252
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=50.85  E-value=15  Score=17.58  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=24.1

Q ss_pred             HHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             4135788998588888410112110122210257863478610
Q gi|254780420|r  243 MSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       243 ~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      +...||.||+.+    |..    ...+++++...+||+.|||=
T Consensus       124 ~~~~Pdliiv~d----~~~----~~~ai~Ea~~l~IPvI~i~D  158 (193)
T cd01425         124 MFRLPDLVIVLD----PRK----EHQAIREASKLGIPVIAIVD  158 (193)
T ss_pred             CCCCCCEEEEEC----CCC----CHHHHHHHHHHCCCEEEEEC
T ss_conf             166999899988----984----16899999861875578850


No 253
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31).  This group includes proteins similar to EcHsp31.  EcHsp31 has chaperone activity.  EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A.   The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain.  EcHsp31 is a homodimer.
Probab=50.67  E-value=12  Score=18.26  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=35.1

Q ss_pred             HHHCCCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             441357889985888884101--1211012221025786347861005887875
Q gi|254780420|r  242 IMSLQPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       242 i~~~~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      +..-++|+||+.+|=|-=.+.  +.....++..+.+.+.||-.||=|--.|.-+
T Consensus        92 ~d~~~Ydavf~pGGHG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaaLl~~  145 (232)
T cd03148          92 ADDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHCC
T ss_conf             784222289967997530577579999999999998599799986747987402


No 254
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=50.60  E-value=20  Score=16.68  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=35.0

Q ss_pred             CCCHHHHHHCCCCEEEECCCCCCCCCCC-CCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             6574464413578899858888841011-2110122210257863478610058878752
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGPGDPAVTS-VYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGPGdP~~~~-~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      +..+++...  +|-|+...|=++..... ......+++....+.+|-|||-|-=+||.|-
T Consensus        68 d~~~~~~~~--~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aG  125 (328)
T COG4977          68 DGGLEAAPP--IDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAG  125 (328)
T ss_pred             CCCCCCCCC--CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHC
T ss_conf             876455676--3299980687754445649999999999846995888608699999711


No 255
>KOG1210 consensus
Probab=50.09  E-value=12  Score=18.20  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             HHHHHHHHCCCCEEE-ECCCC---HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             232222202454133-04657---44644135788998588888410112110122210257863478610058878752
Q gi|254780420|r  219 LLRVLSSLGCRITIV-GAETS---YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       219 Ilr~L~~~g~~v~Vv-p~~~~---~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      |-.++.++|++|+++ |.++.   +++=...+|.-..+++|++++..++..+...++.+..++.-+.=--.|+-+-.+..
T Consensus       199 l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~~~rg~f~~~~~~~g~l~s~~~~  278 (331)
T KOG1210         199 LRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKGMKRGNFTVSLGFTGFLLSILSQ  278 (331)
T ss_pred             HHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHC
T ss_conf             99987652669999728987897643102367421031007888768899999998677606758760469999987425


Q ss_pred             CCC
Q ss_conf             854
Q gi|254780420|r  295 GAQ  297 (396)
Q Consensus       295 G~~  297 (396)
                      |..
T Consensus       279 ~~~  281 (331)
T KOG1210         279 GMS  281 (331)
T ss_pred             CCC
T ss_conf             788


No 256
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.17  E-value=19  Score=16.81  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             EECCCCHHHHHHCC-CCEEEECCCCCCCCCCCCCCHHHHHHHCC--CCCCEEEEECHHHHHHHHCCC
Q ss_conf             30465744644135-78899858888841011211012221025--786347861005887875285
Q gi|254780420|r  233 VGAETSYKDIMSLQ-PDGVLLSNGPGDPAVTSVYSSPIICKLVD--SGMPMFGICLGHQLLGLALGA  296 (396)
Q Consensus       233 vp~~~~~~~i~~~~-pdgi~lSnGPGdP~~~~~~~~~~~~~~~~--~~iPilGIClGhQ~l~~a~G~  296 (396)
                      -++-...+|+..++ -|.|+|=+|-.=|.- +. ..+.++++++  +..|+.|+|+  |-|-.-.|.
T Consensus        71 ~d~G~ql~e~e~~n~aDvvVLlGGLaMP~~-gv-~~d~~kel~ee~~~kkliGvCf--m~mF~ragW  133 (154)
T COG4090          71 TDHGYQLGEREELNSADVVVLLGGLAMPKI-GV-TPDDAKELLEELGNKKLIGVCF--MNMFERAGW  133 (154)
T ss_pred             ECCCEECCCCCCCCCCCEEEEECCCCCCCC-CC-CHHHHHHHHHHCCCCCEEEEEH--HHHHHHCCC
T ss_conf             124354277566664458999756446767-89-9799999998438986587518--989987485


No 257
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=48.54  E-value=21  Score=16.47  Aligned_cols=91  Identities=18%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             EEEEEEC--CCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHH-HCCCCCCEEE
Q ss_conf             4999967--96410232222202454133046574-464413578899858888841011211012221-0257863478
Q gi|254780420|r  207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICK-LVDSGMPMFG  282 (396)
Q Consensus       207 kIvvIDf--GiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~-~~~~~iPilG  282 (396)
                      ||+++|=  -+-..+...|...|++|.....-..+ +.+....||-|+|--+-  |...+......+++ ....++||+=
T Consensus         4 kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~l--P~~dG~~~~~~ir~~~~~~~~PII~   81 (229)
T PRK10161          4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESMTRDIPVVM   81 (229)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf             19999599999999999999779999998999999999852899899997899--8876335878877502468975899


Q ss_pred             EE----CHHHHHHHHCCCCCC
Q ss_conf             61----005887875285446
Q gi|254780420|r  283 IC----LGHQLLGLALGAQTV  299 (396)
Q Consensus       283 IC----lGhQ~l~~a~G~~~~  299 (396)
                      +.    .-..+.|+.+||.-|
T Consensus        82 lta~~~~~d~v~gl~~GADDY  102 (229)
T PRK10161         82 LTARGEEEDRVRGLETGADDY  102 (229)
T ss_pred             EECCCCHHHHHHHHHCCCCEE
T ss_conf             955666577999987698765


No 258
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=48.54  E-value=13  Score=17.91  Aligned_cols=12  Identities=17%  Similarity=-0.022  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             168999999999
Q gi|254780420|r  378 SYYLFSTFIDFM  389 (396)
Q Consensus       378 ~~~~F~~F~~~i  389 (396)
                      ...+|+.|++--
T Consensus       501 ~e~l~~~~l~gY  512 (536)
T PRK09605        501 FEELIKAFEEGY  512 (536)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 259
>pfam08660 Alg14 Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.
Probab=48.33  E-value=10  Score=18.72  Aligned_cols=17  Identities=53%  Similarity=0.901  Sum_probs=12.9

Q ss_pred             HHHHHCCCCEEEECCCCC
Q ss_conf             464413578899858888
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPG  257 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPG  257 (396)
                      .-+.+.+|| +++|||||
T Consensus        82 ~il~k~kPd-vii~tG~g   98 (166)
T pfam08660        82 KLLRRERPD-VILCNGPG   98 (166)
T ss_pred             HHHHHHCCC-EEEECCCC
T ss_conf             999853998-99977996


No 260
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=47.08  E-value=22  Score=16.31  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=20.6

Q ss_pred             HHHHHHHCCCCEECCCC-----HHHHHHHHHHCCCC
Q ss_conf             89999742783211257-----68999999853984
Q gi|254780420|r  111 FDAWLKSCGIIGLSGID-----TRALTVWIRDYGVS  141 (396)
Q Consensus       111 L~~wL~~~~IpgI~GID-----TRaLTk~IRe~G~~  141 (396)
                      |.+|++...+.||+|=.     |..|...+++.|--
T Consensus       101 l~~~~~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~  136 (459)
T PRK00421        101 LAELMRLRTSIAVAGTHGKTTTTSLLAHVLAEAGLD  136 (459)
T ss_pred             HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             999982596499977888611899999999976998


No 261
>pfam10281 Ish1 Putative stress-responsive nuclear envelope protein. This family of proteins found in fungi is a putative stress-responsive nuclear envelope protein Ish1.
Probab=46.58  E-value=14  Score=17.77  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHHCCCCEECCCCHH-HHHHHHHHC
Q ss_conf             41798999974278321125768-999999853
Q gi|254780420|r  107 ANMHFDAWLKSCGIIGLSGIDTR-ALTVWIRDY  138 (396)
Q Consensus       107 s~~sL~~wL~~~~IpgI~GIDTR-aLTk~IRe~  138 (396)
                      +...|.+||..+|||.=....|| .|....|++
T Consensus         5 s~~~Lk~wL~~~gi~~~~~~~~rd~Ll~~a~~~   37 (38)
T pfam10281         5 SDSDLKEWLDSHGIPVPQKAATRDELLALARKN   37 (38)
T ss_pred             CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             488999999984997897136899999999861


No 262
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=46.50  E-value=23  Score=16.25  Aligned_cols=30  Identities=7%  Similarity=-0.111  Sum_probs=19.6

Q ss_pred             HHHHHHHCCCCE--ECC--CCHHHHHHHHHHCCC
Q ss_conf             899997427832--112--576899999985398
Q gi|254780420|r  111 FDAWLKSCGIIG--LSG--IDTRALTVWIRDYGV  140 (396)
Q Consensus       111 L~~wL~~~~Ipg--I~G--IDTRaLTk~IRe~G~  140 (396)
                      -.+||++++||+  =+.  .|.....+.+.+.+.
T Consensus       109 aK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~  142 (435)
T PRK06395        109 MRYLMERHNIPGNINFNACFSEKDAARDYITSMK  142 (435)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             9999998099856645323999999999997099


No 263
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=46.20  E-value=22  Score=16.32  Aligned_cols=81  Identities=14%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             CEEEECCCCCCCCCCCHH--HHCCCCCCCCCEEEEE--EEECCCCCCCCCCCCCCHHHHH-HHCCCCEECCCCHHHHHH-
Q ss_conf             173216897368458823--4204653332102366--6404654434552417989999-742783211257689999-
Q gi|254780420|r   60 QIVNFTFPHIGNVGVNSE--DFESISRKNFKGAVGL--VIKAEITEPSNYRANMHFDAWL-KSCGIIGLSGIDTRALTV-  133 (396)
Q Consensus        60 QIlvfT~P~IGNyGvn~~--d~ES~~~~~~~~~~g~--Iv~~~~~~~Sn~rs~~sL~~wL-~~~~IpgI~GIDTRaLTk-  133 (396)
                      -.+.|.++..+|.-....  -.|...  .   ..|.  .+.......+.-.....+.+.+ +..+...|.-+|..+++. 
T Consensus        34 ~~i~~~~~~~~~~f~~~~~~g~~~~a--~---~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~a~~~~  108 (322)
T COG1879          34 KTIGVVVPTLGNPFFQAVRKGAEAAA--K---KLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPA  108 (322)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH--H---HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf             87999947788818999999999999--8---649955897157888819999999999855998899928980758999


Q ss_pred             --HHHHCCCCCEEE
Q ss_conf             --998539842366
Q gi|254780420|r  134 --WIRDYGVSNSVI  145 (396)
Q Consensus       134 --~IRe~G~~~a~I  145 (396)
                        +.++.|..--.+
T Consensus       109 v~~a~~aGIpVv~~  122 (322)
T COG1879         109 VKKAKAAGIPVVTV  122 (322)
T ss_pred             HHHHHHCCCEEEEE
T ss_conf             99999779849996


No 264
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily.  In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=45.88  E-value=23  Score=16.19  Aligned_cols=12  Identities=8%  Similarity=0.144  Sum_probs=4.7

Q ss_pred             CCHHHHHHHCCC
Q ss_conf             798999974278
Q gi|254780420|r  109 MHFDAWLKSCGI  120 (396)
Q Consensus       109 ~sL~~wL~~~~I  120 (396)
                      ..+.+.+++++.
T Consensus        19 ~gi~~~a~~~gy   30 (264)
T cd06267          19 RGIEEAAREAGY   30 (264)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999998699


No 265
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE); InterPro: IPR010169   This entry represents a clade of acetylornithine deacetylases (argE) from proteobacteria, which catalyse the final step in arginine biosynthesis. The enzyme is closely related to and may share a common origin with dapE (succinyl-diaminopimelate desuccinylase), cpg2 (carboxypeptidase G2) and ACY1 (aminoacylase I), all of which are members of the metal-dependent aminoacylase family, ArgE/dapE/ACY1/CPG2/yscS .; GO: 0008270 zinc ion binding, 0008777 acetylornithine deacetylase activity, 0050897 cobalt ion binding, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=45.77  E-value=20  Score=16.70  Aligned_cols=50  Identities=14%  Similarity=0.106  Sum_probs=23.0

Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCC--CCCCHHHHHHHHH
Q ss_conf             69982899998899808726867997789834878877--6700168999999
Q gi|254780420|r  336 LPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP--GPQDSYYLFSTFI  386 (396)
Q Consensus       336 lp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~P--GP~D~~~~F~~F~  386 (396)
                      +.+.|++-|-++|=|.|.|=.-++-=.-+-.||=|..|  | .|-..|-..|-
T Consensus       229 ~~~~F~ppy~tl~~G~v~GG~A~N~i~~~C~~~~d~R~~~G-~~p~~l~~~l~  280 (386)
T TIGR01892       229 LEEAFTPPYATLNIGVVKGGKAVNIIPAACEFVFDLRPIPG-MDPEELLALLE  280 (386)
T ss_pred             CCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECCCCC-CCHHHHHHHHH
T ss_conf             77787598871442067468425550346789996068867-89899989999


No 266
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin.  ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase.  The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=44.63  E-value=16  Score=17.43  Aligned_cols=65  Identities=17%  Similarity=0.250  Sum_probs=35.4

Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHHHHC----CCCEEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCEEEEECHHH
Q ss_conf             232222202454133046574464413----57889985888884101--12110122210257863478610058
Q gi|254780420|r  219 LLRVLSSLGCRITIVGAETSYKDIMSL----QPDGVLLSNGPGDPAVT--SVYSSPIICKLVDSGMPMFGICLGHQ  288 (396)
Q Consensus       219 Ilr~L~~~g~~v~Vvp~~~~~~~i~~~----~pdgi~lSnGPGdP~~~--~~~~~~~~~~~~~~~iPilGIClGhQ  288 (396)
                      +++.|+.. .  .|.+  .+.++|...    +.+-+++-.|...|...  .......++++.+.+=--||||.|-=
T Consensus        18 ~~~~L~~~-~--av~~--v~~~~L~~~pw~~~~~llv~PGG~d~~y~~~l~~~g~~~i~~fV~~GG~ylG~CaGaY   88 (114)
T cd03144          18 LAELLRLY-L--AVST--VTADELAVGPWESKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAY   88 (114)
T ss_pred             HHHHHHHH-C--CEEE--CCHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999874-3--6454--0699984495426735999448767678888453667999999975994799855310


No 267
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.62  E-value=24  Score=16.06  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             HHHHHHCCCC---EEEECCCCHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             2222202454---13304657446441357889985888884101
Q gi|254780420|r  221 RVLSSLGCRI---TIVGAETSYKDIMSLQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       221 r~L~~~g~~v---~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~  262 (396)
                      ..|.+.|+++   .++--+.+++++.+..+|+|||.-|-|.|...
T Consensus       364 ~~l~~lGV~f~~n~~VGk~~tl~eL~~eGydAVfIg~GAg~p~~l  408 (944)
T PRK12779        364 EKIKLLGGRFVKNFVVGKTATLEDLKAEGFWKIFVGTGAGLPTFM  408 (944)
T ss_pred             HHHHHCCEEEEECCEECCCCCHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             999967839997856477688999976899989997478887568


No 268
>PRK10576 iron-hydroxamate transporter substrate-binding subunit; Provisional
Probab=44.29  E-value=25  Score=16.03  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCEE---------------EECC---------CCHHHHHHCCCCEEEECCCC
Q ss_conf             7149999679641023222220245413---------------3046---------57446441357889985888
Q gi|254780420|r  205 KYHVVCIDYGIRSNLLRVLSSLGCRITI---------------VGAE---------TSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       205 ~~kIvvIDfGiK~nIlr~L~~~g~~v~V---------------vp~~---------~~~~~i~~~~pdgi~lSnGP  256 (396)
                      ..|||++|++    +...|..+|+..+=               +|..         -++|.|..++||-|+.|+.=
T Consensus        32 P~RVv~LdW~----~aE~llaLGv~Pvgvad~~~Y~~Wv~~P~lp~~V~DVGtR~ePNLE~Ia~LkPDLIi~s~~~  103 (292)
T PRK10576         32 PNRIVALEWL----PVELLLALGITPYGVADTHNYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGY  103 (292)
T ss_pred             CCEEEEECHH----HHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCC
T ss_conf             9869994419----89999977998524433100223226889998765676888989999974699889946765


No 269
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=44.03  E-value=21  Score=16.53  Aligned_cols=33  Identities=21%  Similarity=0.631  Sum_probs=23.4

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             35788998588888410112110122210257863478610
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      ..||.+|+.    ||..-    ...+++....+||+.|||=
T Consensus       113 ~ePdlliV~----Dp~~e----~~AV~EA~~l~IPvIaivD  145 (204)
T PRK04020        113 IEPDVLVVT----DPRGD----AQAVKEAIEIGIPVVALCD  145 (204)
T ss_pred             CCCCEEEEE----CCCCC----HHHHHHHHHCCCCEEEEEC
T ss_conf             689989997----88630----4899999876999899827


No 270
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=43.70  E-value=19  Score=16.79  Aligned_cols=72  Identities=26%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             HHHHHHHHCCCC---EEEECCCC--HHHHHH--C-CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             232222202454---13304657--446441--3-578899858888841011211012221025786347861005887
Q gi|254780420|r  219 LLRVLSSLGCRI---TIVGAETS--YKDIMS--L-QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLL  290 (396)
Q Consensus       219 Ilr~L~~~g~~v---~Vvp~~~~--~~~i~~--~-~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l  290 (396)
                      |...|.+.|.++   .++|-+..  ..++.+  . ..|.|+.++|-| +...+. -.+.+..++++.+|=||-  =+..+
T Consensus        32 l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG-~t~RDv-TpEA~~~l~dKeipGFgE--~fR~~  107 (169)
T COG0521          32 LVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTG-ITPRDV-TPEATRPLFDKEIPGFGE--LFRRL  107 (169)
T ss_pred             HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCC-CCCCCC-CHHHHHHHHHCCCCCHHH--HHHHH
T ss_conf             99999975976305999469789999999998648877999759836-898867-889999988531875999--99985


Q ss_pred             HHHC
Q ss_conf             8752
Q gi|254780420|r  291 GLAL  294 (396)
Q Consensus       291 ~~a~  294 (396)
                      ++..
T Consensus       108 S~~~  111 (169)
T COG0521         108 SLEE  111 (169)
T ss_pred             HHHC
T ss_conf             4431


No 271
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=43.66  E-value=25  Score=15.96  Aligned_cols=48  Identities=17%  Similarity=0.322  Sum_probs=18.4

Q ss_pred             CEEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCHHHHH-HCCCCEEEEC
Q ss_conf             1499996--7964102322222024541330465744644-1357889985
Q gi|254780420|r  206 YHVVCID--YGIRSNLLRVLSSLGCRITIVGAETSYKDIM-SLQPDGVLLS  253 (396)
Q Consensus       206 ~kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~-~~~pdgi~lS  253 (396)
                      +||+++|  --+-..+-..|...|++|..+..-..+.+.+ ...||-|+|-
T Consensus         6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilD   56 (239)
T PRK09468          6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLD   56 (239)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf             789999099999999999999889999998999999999975899899987


No 272
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.20  E-value=25  Score=15.91  Aligned_cols=47  Identities=11%  Similarity=0.200  Sum_probs=21.8

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHC-CCCEECCCCHHHHHHHH---HHCCCC
Q ss_conf             66404654434552417989999742-78321125768999999---853984
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSC-GIIGLSGIDTRALTVWI---RDYGVS  141 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~-~IpgI~GIDTRaLTk~I---Re~G~~  141 (396)
                      +++.+.-..+..  -...+++++.+. +...+.-+|+.+++..+   ++.|..
T Consensus        37 ~~~~da~~D~~~--Q~~~ie~lI~qgvDaIiv~p~d~~a~~~~v~~a~~aGIp   87 (274)
T cd06311          37 FILVTASNDTEQ--QNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIF   87 (274)
T ss_pred             EEEECCCCCHHH--HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCE
T ss_conf             999718999999--999999999749999999579778889999999986997


No 273
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=43.07  E-value=26  Score=15.90  Aligned_cols=37  Identities=11%  Similarity=0.242  Sum_probs=17.3

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             3578899858888841011211012221025786347861
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      ++||-|++.  --+.. ......++...++..+.|+|=--
T Consensus       162 ~~PdRIViG--~~~~~-a~~~~~ely~~~~~~~~p~l~t~  198 (414)
T COG1004         162 LYPDRIVIG--VRSER-AAAVLRELYAPFLRQDVPILFTD  198 (414)
T ss_pred             CCCCEEEEC--CCCHH-HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             589838992--57716-89999999753420499889956


No 274
>KOG2278 consensus
Probab=43.07  E-value=18  Score=16.98  Aligned_cols=49  Identities=20%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC--CCCHHHCCC
Q ss_conf             689999998539842366327654589789888774158874--321011013
Q gi|254780420|r  128 TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLK--GAELAKHVT  178 (396)
Q Consensus       128 TRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~--~~dL~~~Vs  178 (396)
                      .|||++.||..-+-+..-+. .|+-..++++++ +..+...+  -.|+-+.|.
T Consensus        11 skaLs~iLRHtA~~~~L~m~-~dGfvpv~~lL~-lnq~r~~~~t~ddi~riVk   61 (207)
T KOG2278          11 SKALSRILRHTATELRLNMR-GDGFVPVEDLLN-LNQFRGANHTIDDIRRIVK   61 (207)
T ss_pred             HHHHHHHHHHHHHHHCCCCC-CCCCEEHHHHHC-CCHHCCCCCCHHHHHHHHH
T ss_conf             99999999988887440115-888467899754-6311246775999999983


No 275
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=42.86  E-value=26  Score=15.88  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=18.4

Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             99967964102322222024541330
Q gi|254780420|r  209 VCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       209 vvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                      ..+|=|++...++.|.+.|+++.|.-
T Consensus       174 I~VDGGI~~~ti~~l~~aGad~~V~G  199 (223)
T PRK08745        174 LEIDGGVKADNIGAIAAAGADTFVAG  199 (223)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             99978879899999998699999974


No 276
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.70  E-value=21  Score=16.55  Aligned_cols=18  Identities=17%  Similarity=0.257  Sum_probs=11.9

Q ss_pred             HHHHHCCCCEEEECCCCC
Q ss_conf             464413578899858888
Q gi|254780420|r  240 KDIMSLQPDGVLLSNGPG  257 (396)
Q Consensus       240 ~~i~~~~pdgi~lSnGPG  257 (396)
                      +.+..+.-||+++|-=-|
T Consensus       130 ~~~~~~r~DGlIvSTPTG  147 (259)
T PRK00561        130 EFWEKYRGSGLLIGPRTG  147 (259)
T ss_pred             EEEEEEECCEEEEECCCC
T ss_conf             997888537899968986


No 277
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.61  E-value=26  Score=15.85  Aligned_cols=158  Identities=21%  Similarity=0.342  Sum_probs=82.9

Q ss_pred             EECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC----CCCHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             211257689999998539842366327654589789888774158874----3210110133332111686534454344
Q gi|254780420|r  122 GLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLK----GAELAKHVTVSQRRDWSEKIWKWGEETS  197 (396)
Q Consensus       122 gI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~----~~dL~~~Vs~~~~~~~~~~~~~~~~~~~  197 (396)
                      ++.++-+-.|+.-+-+.| ..|.|...   ..+.+++.+.+++.....    +.||....+.   ..+.+         .
T Consensus         9 ~M~~vs~~~LaaAvs~aG-glG~l~~~---~~~~~~l~~~i~~~~~~~~~pfgvnl~~~~~~---~~~~~---------~   72 (236)
T cd04730           9 PMAGVSTPELAAAVSNAG-GLGFIGAG---YLTPEALRAEIRKIRALTDKPFGVNLLVPSSN---PDFEA---------L   72 (236)
T ss_pred             CCCCCCCHHHHHHHHHCC-CEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC---CCHHH---------H
T ss_conf             877878699999999689-85585788---89999999999999974699724433246776---36899---------9


Q ss_pred             CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCH---HHHHHCCCCEEEECCCC---CCCCCC---CCCCHH
Q ss_conf             346777771499996796410232222202454133046574---46441357889985888---884101---121101
Q gi|254780420|r  198 FLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSY---KDIMSLQPDGVLLSNGP---GDPAVT---SVYSSP  268 (396)
Q Consensus       198 ~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~---~~i~~~~pdgi~lSnGP---GdP~~~---~~~~~~  268 (396)
                      ...--+.+.+++.+=+|.-..+++.|.+.|..|  +.--++.   ....+..+|+|+.- |+   |+....   .....+
T Consensus        73 ~~~~~~~~v~~v~~~~g~p~~~v~~l~~~g~~v--~~~v~s~~~A~~a~~~GaD~iv~q-G~eAGGH~g~~~~~~~~lv~  149 (236)
T cd04730          73 LEVALEEGVPVVSFSFGPPAEVVERLKAAGIKV--IPTVTSVEEARKAEAAGADALVAQ-GAEAGGHRGTFDIGTFALVP  149 (236)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEE--EEECCCHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCHHHHHH
T ss_conf             999997699999987989789999999829989--995898999999998189989997-77777788987555677999


Q ss_pred             HHHHHCCCCCCEE---EEECHHHHHH-HHCCCCCCC
Q ss_conf             2221025786347---8610058878-752854466
Q gi|254780420|r  269 IICKLVDSGMPMF---GICLGHQLLG-LALGAQTVK  300 (396)
Q Consensus       269 ~~~~~~~~~iPil---GIClGhQ~l~-~a~G~~~~k  300 (396)
                      .+++..  ++||+   ||.=|.++.+ +++|+.-.-
T Consensus       150 ~v~~~~--~ipviaAGGI~~g~~i~aal~lGA~gV~  183 (236)
T cd04730         150 EVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQ  183 (236)
T ss_pred             HHHHHH--CCCEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf             999982--9868965462778999999980897999


No 278
>KOG1834 consensus
Probab=42.07  E-value=17  Score=17.11  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             34677777149999679641023222220245413304657446
Q gi|254780420|r  198 FLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKD  241 (396)
Q Consensus       198 ~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~  241 (396)
                      +.+...-++.|.++|||.|..--..|+...++-+-.|-...-++
T Consensus       212 y~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp~C~pgwq~wnk  255 (952)
T KOG1834         212 YTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKPTCKPGWQGWNK  255 (952)
T ss_pred             CCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf             66330589999997134665567626999716765633333443


No 279
>PRK10416 cell division protein FtsY; Provisional
Probab=42.00  E-value=27  Score=15.79  Aligned_cols=60  Identities=13%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             HHHHHHHHCCCCEEEECCC-CH---HHHHH--CCCCEEEECCCCC-CCCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf             2322222024541330465-74---46441--3578899858888-841011211012221025786347
Q gi|254780420|r  219 LLRVLSSLGCRITIVGAET-SY---KDIMS--LQPDGVLLSNGPG-DPAVTSVYSSPIICKLVDSGMPMF  281 (396)
Q Consensus       219 Ilr~L~~~g~~v~Vvp~~~-~~---~~i~~--~~pdgi~lSnGPG-dP~~~~~~~~~~~~~~~~~~iPil  281 (396)
                      +.++|.+.|.+|.+.-.|| .+   +.+.-  .+-+-=+++...| ||+.+-   ...+......++-++
T Consensus       315 LA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~---~dai~~a~~~~~Dvv  381 (499)
T PRK10416        315 LARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI---FDAIQAAKARNVDVL  381 (499)
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH---HHHHHHHHHCCCCEE
T ss_conf             9999997799537884066756899999998424573698368999979999---999999997299989


No 280
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=41.91  E-value=25  Score=15.99  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=22.3

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      -||.||+.    ||..    ....++++...+||+.|||
T Consensus       157 lPd~viv~----d~~~----e~~AV~EA~kl~IPvI~iv  187 (255)
T PRK05299        157 LPDALFVV----DPNK----EHIAVKEARKLGIPVVAIV  187 (255)
T ss_pred             CCCEEEEE----CCCC----CHHHHHHHHHCCCCEEEEE
T ss_conf             99879984----7853----3799999997599888762


No 281
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.82  E-value=27  Score=15.77  Aligned_cols=28  Identities=14%  Similarity=0.029  Sum_probs=11.0

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             66640465443455241798999974278
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGI  120 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~I  120 (396)
                      |+||.+...... -+-...+.+.++++|.
T Consensus         3 Gvivp~i~npf~-~~l~~gi~~~~~~~gy   30 (270)
T cd06296           3 GLVFPDLDSPWA-SEVLRGVEEAAAAAGY   30 (270)
T ss_pred             EEEECCCCCHHH-HHHHHHHHHHHHHCCC
T ss_conf             999799853999-9999999999998499


No 282
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT).  MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein.  The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=41.11  E-value=21  Score=16.58  Aligned_cols=70  Identities=23%  Similarity=0.374  Sum_probs=42.3

Q ss_pred             HHHHHHHHCCCC---EEEECCC-CH-HHHHH----CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHH
Q ss_conf             232222202454---1330465-74-46441----357889985888884101121101222102578634786100588
Q gi|254780420|r  219 LLRVLSSLGCRI---TIVGAET-SY-KDIMS----LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQL  289 (396)
Q Consensus       219 Ilr~L~~~g~~v---~Vvp~~~-~~-~~i~~----~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~  289 (396)
                      +.+.|.+.|++|   .++|-+. .. +.+.+    .++|-|+.++|-| +...+ ...+.++.+++..+|=    +|.++
T Consensus        25 l~~~l~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~~~~DlIittGGTG-~~~rD-~TpEA~~~v~~k~~pG----~~e~~   98 (152)
T cd00886          25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRD-VTPEATRPLLDKELPG----FGEAF   98 (152)
T ss_pred             HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCC-CCCCC-CCHHHHHHHHHHCCCC----HHHHH
T ss_conf             999998749978899995999899999999998536988899668555-89988-8899999988516965----99999


Q ss_pred             HHHHC
Q ss_conf             78752
Q gi|254780420|r  290 LGLAL  294 (396)
Q Consensus       290 l~~a~  294 (396)
                      ....+
T Consensus        99 r~~s~  103 (152)
T cd00886          99 RALSL  103 (152)
T ss_pred             HHHHH
T ss_conf             99875


No 283
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=41.00  E-value=27  Score=15.78  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      -||.||+    =||..    ....+.++-.-+|||++||
T Consensus       157 lPd~l~v----iD~~~----E~IAv~EA~kLgIPvvA~v  187 (227)
T TIGR01011       157 LPDLLFV----IDPRK----EKIAVAEARKLGIPVVAIV  187 (227)
T ss_pred             CCCEEEE----ECCCC----CHHHHHHHHHCCCCEEEEE
T ss_conf             6970899----74821----0689999733799789870


No 284
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=40.56  E-value=28  Score=15.64  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=23.1

Q ss_pred             CCCCEEEEEECC--CCCHHHHHHHHHCCC-CEEEECCC-CHHHHHHCCCCEEEEC
Q ss_conf             777149999679--641023222220245-41330465-7446441357889985
Q gi|254780420|r  203 DAKYHVVCIDYG--IRSNLLRVLSSLGCR-ITIVGAET-SYKDIMSLQPDGVLLS  253 (396)
Q Consensus       203 ~~~~kIvvIDfG--iK~nIlr~L~~~g~~-v~Vvp~~~-~~~~i~~~~pdgi~lS  253 (396)
                      +++.||+++|==  +-.-+-+.|.+.|+. |.....-. -.+.+.+..||-|++-
T Consensus         3 ~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D   57 (129)
T PRK10610          3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISD   57 (129)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             9998999997989999999999998699789998999999999985899999981


No 285
>KOG4842 consensus
Probab=40.38  E-value=20  Score=16.71  Aligned_cols=22  Identities=9%  Similarity=-0.061  Sum_probs=8.8

Q ss_pred             CCCCEECCCCHHHHHHHHHHCC
Q ss_conf             2783211257689999998539
Q gi|254780420|r  118 CGIIGLSGIDTRALTVWIRDYG  139 (396)
Q Consensus       118 ~~IpgI~GIDTRaLTk~IRe~G  139 (396)
                      +++.+++-.--|-|...+=+.+
T Consensus        33 ~K~~~vss~~~kll~~~llk~i   54 (278)
T KOG4842          33 QKVAVVSSKPNKLLALNLLKEI   54 (278)
T ss_pred             CEEEEECCCHHHHHHHHHHHHH
T ss_conf             1145531501787755465544


No 286
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=39.99  E-value=28  Score=15.58  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---------CCCCCCCHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             768999999853984236632765458978988877415---------88743210110133332111686534454344
Q gi|254780420|r  127 DTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNW---------SGLKGAELAKHVTVSQRRDWSEKIWKWGEETS  197 (396)
Q Consensus       127 DTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~---------~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~  197 (396)
                      +..++.+.||+.| +++.|+-.++.  +++.+..-+...         |+..|+...+.+--| ....          ..
T Consensus        94 ~~~~~i~~Ik~~g-~k~GlAlnP~T--pi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~K-I~~l----------r~  159 (227)
T PRK09722         94 QAFRLIDEIRRAG-MKVGLVLNPET--PVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDK-IAEL----------KA  159 (227)
T ss_pred             CHHHHHHHHHHCC-CCEEEEECCCC--CHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHH-HHHH----------HH
T ss_conf             5999999999869-97223338999--866887667437989999888999876566889999-9999----------99


Q ss_pred             CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             3467777714999967964102322222024541330
Q gi|254780420|r  198 FLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       198 ~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                      ..+..+... ..-+|=|++..-+..|.+.|+++.|+-
T Consensus       160 ~~~~~~~~~-~I~VDGGI~~~~i~~~~~aGAd~~V~G  195 (227)
T PRK09722        160 WREREGLEY-EIEVDGSCNQKTYEKLMAAGADVFIVG  195 (227)
T ss_pred             HHHHCCCCC-EEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             998259982-699989888999999998699999977


No 287
>TIGR01686 FkbH FkbH domain; InterPro: IPR010037   This entry describes a domain of unknown function. One of proteins with this domain is a modular polyketide synthase, which is 4800 amino acids in length from Streptomyces avermilitis, where the domain is the C-terminal segment. By contrast, the FkbH protein from Streptomyces hygroscopicus (Q84G18 from SWISSPROT) apparently contains only this domain. The remaining members of the family all contain an additional N-terminal domain of between 200 and 275 amino acids, which show less than 20 0dentity to one another. It seems likely then that these proteins are involved in disparate functions, probably the biosynthesis of different natural products. For instance, the FkbH gene is found in a gene cluster believed to be responsible for the biosynthesis of unusual 'PKS extender units' in the ascomycin pathway . This domain is composed of two parts, the first of which is a member of subfamily IIIC of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases  are present in this domain. The C-terminal portion of this domain is unique to this family (by BLAST)..
Probab=39.82  E-value=14  Score=17.81  Aligned_cols=108  Identities=20%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC-CCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             899999985398423663276545897898887741588-7432101101333321116865344543443467777714
Q gi|254780420|r  129 RALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSG-LKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYH  207 (396)
Q Consensus       129 RaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~-~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  207 (396)
                      |.+...++..|...|+.+..     |-+.+++.+..-++ +-..+.-...    ...|.++....-+-....+.+  .-.
T Consensus        42 ~~~i~~l~~~G~LlA~aSkN-----d~~~~k~~l~~~~d~l~~~e~f~~~----~~~W~PKs~~~~~~A~~LNl~--~~s  110 (337)
T TIGR01686        42 QEKIVTLKKQGVLLALASKN-----DEDDVKEVLERRKDFLLKAEDFSLL----SIAWGPKSESLRKIAKKLNLG--TDS  110 (337)
T ss_pred             HHHHHHHHHCCCEEEEEECC-----CHHHHHHHHHCCCCCCCCHHHHHHH----HHCCCCCCHHHHHHHHHHCCC--CCH
T ss_conf             99998898778414220028-----7689999840383310013246778----643799716899999984885--231


Q ss_pred             EEEEECCCCCHHH-HHHHHH-CCCCEEEECCCCHHHHHHCCCCEEEECCCC
Q ss_conf             9999679641023-222220-245413304657446441357889985888
Q gi|254780420|r  208 VVCIDYGIRSNLL-RVLSSL-GCRITIVGAETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       208 IvvIDfGiK~nIl-r~L~~~-g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      +++||=    |++ +..++. +=+|+|++..-+..+.     +.+.++.+|
T Consensus       111 ~~F~DD----~p~E~~~~~~~LPEV~v~~~~~d~~~~-----~~~l~~~~P  152 (337)
T TIGR01686       111 FLFIDD----NPAERAEVKIELPEVLVVTLECDPAEL-----AAILLLLNP  152 (337)
T ss_pred             HEEECC----CHHHHHHHHHHCCCEEEEECCCCHHHH-----HHHHCCCCC
T ss_conf             100078----875487687518946898437883789-----997367871


No 288
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.60  E-value=29  Score=15.54  Aligned_cols=94  Identities=17%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---------CCCCCCCHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf             5768999999853984236632765458978988877415---------8874321011013333211168653445434
Q gi|254780420|r  126 IDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNW---------SGLKGAELAKHVTVSQRRDWSEKIWKWGEET  196 (396)
Q Consensus       126 IDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~---------~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~  196 (396)
                      -+..++.+.||+.|. ++.|+-.++.  +++.+..-+...         |+..|+.+...+.-+-.           .-.
T Consensus        93 ~~~~~~i~~Ik~~g~-k~GlalnP~T--~~~~l~~~l~~~D~VLvMtV~PGf~GQ~f~~~~l~Ki~-----------~l~  158 (220)
T PRK08883         93 EHVDRTLQLIKEHGC-QAGVVLNPAT--PLAHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLR-----------AVR  158 (220)
T ss_pred             CCHHHHHHHHHHCCC-CEEEEECCCC--CHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHH-----------HHH
T ss_conf             499999999998599-6688847999--87999999974697999874589887545577999999-----------999


Q ss_pred             CCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             43467777714999967964102322222024541330
Q gi|254780420|r  197 SFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       197 ~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                      ......+.... ..+|=|++..-++.|.+.|+++.|.-
T Consensus       159 ~~~~~~~~~~~-I~VDGGI~~~ti~~l~~aGad~~V~G  195 (220)
T PRK08883        159 KMIDASGRDIR-LEIDGGVKVDNIREIAEAGADMFVAG  195 (220)
T ss_pred             HHHHHCCCCCE-EEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             98874499807-99989878999999998799999968


No 289
>pfam02992 Transposase_21 Transposase family tnp2.
Probab=39.51  E-value=16  Score=17.36  Aligned_cols=45  Identities=24%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             CCCEEEECCCCHHHHHHCCCCEEEEC---CCCCCC-CCCCCCCHHHHHHHC
Q ss_conf             45413304657446441357889985---888884-101121101222102
Q gi|254780420|r  228 CRITIVGAETSYKDIMSLQPDGVLLS---NGPGDP-AVTSVYSSPIICKLV  274 (396)
Q Consensus       228 ~~v~Vvp~~~~~~~i~~~~pdgi~lS---nGPGdP-~~~~~~~~~~~~~~~  274 (396)
                      .-|.++|||.+...-++  ..-|+||   +||-.| .+.+.+..+++.++.
T Consensus        64 WPV~l~~YNLPp~~cmk--~~~~~lsllIpGP~~Pg~diDVyl~PLieeL~  112 (226)
T pfam02992        64 WPVILVPYNLPPWLCMK--RENIFLSLLIPGPKQPGNDIDVFLQPLIEELK  112 (226)
T ss_pred             CEEEEEECCCCHHHHHH--HHHHHEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             41688505698788631--34432024133788888663236788999999


No 290
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698   Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways .   This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown.   PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=39.34  E-value=27  Score=15.77  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             CEEEEEEEECC-----CCCCCCCCCCCCHHHHHHHC--CCCEECCCCH--------HHHHHHHHHCCCCCEEE
Q ss_conf             10236664046-----54434552417989999742--7832112576--------89999998539842366
Q gi|254780420|r   88 KGAVGLVIKAE-----ITEPSNYRANMHFDAWLKSC--GIIGLSGIDT--------RALTVWIRDYGVSNSVI  145 (396)
Q Consensus        88 ~~~~g~Iv~~~-----~~~~Sn~rs~~sL~~wL~~~--~IpgI~GIDT--------RaLTk~IRe~G~~~a~I  145 (396)
                      .|++||=|...     +.+ ..|.---++-++|.+-  |||-+-+=||        |.|+|++|++|+--.|+
T Consensus        34 lWaSGLs~S~~lGvRDsnE-ASWt~lv~vve~~sDavdGvPvLvDgDtGyGNFNnARr~arkle~~GaaG~Cl  105 (272)
T TIGR02320        34 LWASGLSVSAALGVRDSNE-ASWTQLVEVVETMSDAVDGVPVLVDGDTGYGNFNNARRLARKLEDRGAAGVCL  105 (272)
T ss_pred             EHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             0343677864147853203-20899999986431258880168537879871467999999997468632220


No 291
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.19  E-value=29  Score=15.50  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             CHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC----CCHHHCCCC---CCC
Q ss_conf             9899997427832112576899999985398423663276545897898887741588743----210110133---332
Q gi|254780420|r  110 HFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKG----AELAKHVTV---SQR  182 (396)
Q Consensus       110 sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~----~dL~~~Vs~---~~~  182 (396)
                      +-.++-..+.+-|+    ||.|-|.||...+.+.+.... ..+..++   ..++=+-+.+.    ...+ .|+.   ..+
T Consensus       128 ~~~~~~a~~~legf----~rs~~ke~~~g~t~~l~~v~~-~~~~~~~---~~lrf~ls~~sa~v~gq~~-~v~~~~~~~~  198 (447)
T PRK08261        128 DPAQAIAQRALEGF----TRSLGKELRRGATAQLVYVAP-GAETGLE---STLRFFLSPRSAYVSGQVV-RVGAADAAPP  198 (447)
T ss_pred             CHHHHHHHHHHHHH----HHHHHHHHHCCCEEEEEEECC-CCHHHHH---HHHHHHHCCCCCCCCCEEE-EECCCCCCCC
T ss_conf             99999999877788----998999972684367999788-8400115---5242440666331125389-9638988898


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCEEEEEE---CCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             111686534454344346777771499996---79641023222220245413304
Q gi|254780420|r  183 RDWSEKIWKWGEETSFLKSSDAKYHVVCID---YGIRSNLLRVLSSLGCRITIVGA  235 (396)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~kIvvID---fGiK~nIlr~L~~~g~~v~Vvp~  235 (396)
                      .+|.++.              . -|||++=   =||=..|.+.|.+.|++|+++..
T Consensus       199 ~~~~~pL--------------~-GKVALVTGAArGIG~AIA~~LAreGA~VVi~Di  239 (447)
T PRK08261        199 ADWDRPL--------------A-GKVALVTGAARGIGAAIAEVLARDGAHVVCLDV  239 (447)
T ss_pred             CCCCCCC--------------C-CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             8878889--------------9-998999172578999999999986999999827


No 292
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=38.67  E-value=30  Score=15.44  Aligned_cols=40  Identities=30%  Similarity=0.489  Sum_probs=22.4

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHH----HCCCCEEEEC
Q ss_conf             7964102322222024541330465744644----1357889985
Q gi|254780420|r  213 YGIRSNLLRVLSSLGCRITIVGAETSYKDIM----SLQPDGVLLS  253 (396)
Q Consensus       213 fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~----~~~pdgi~lS  253 (396)
                      +|+.+ |...|++.|++|.++..+.+.+++.    +.+||-|-+|
T Consensus        15 lGl~~-la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS   58 (121)
T pfam02310        15 LGLNY-VAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLS   58 (121)
T ss_pred             HHHHH-HHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             89999-999999859950010247999999999998099999995


No 293
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=38.65  E-value=30  Score=15.44  Aligned_cols=52  Identities=19%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             EEEEEECCCCCH---HHHHHHHHCCCCEEEECCC---CHHHHH----HCCCCEEEECCCCCCCCCC
Q ss_conf             499996796410---2322222024541330465---744644----1357889985888884101
Q gi|254780420|r  207 HVVCIDYGIRSN---LLRVLSSLGCRITIVGAET---SYKDIM----SLQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       207 kIvvIDfGiK~n---Ilr~L~~~g~~v~Vvp~~~---~~~~i~----~~~pdgi~lSnGPGdP~~~  262 (396)
                      +|+.||||.|+=   |-..+...-.-+.+++...   .+++|.    .++|++|++    |-|...
T Consensus         2 riLgiD~G~kriGvAisd~~~~~a~Pl~~i~~~~~~~~~~~i~~ii~e~~i~~iVv----GlP~~~   63 (134)
T pfam03652         2 RILGLDVGTKRIGVAISDPLGILASPLETIERKNGKPDLEELAELIKEWQPDGIVV----GLPLNM   63 (134)
T ss_pred             CEEEEECCCCEEEEEEECCCCCEEECEEEEECCCCHHHHHHHHHHHHHHCCCEEEE----ECCCCC
T ss_conf             79999808997999993599982502488985885589999999999839998999----558999


No 294
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.02  E-value=25  Score=15.96  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE--ECHHHHHHHHC
Q ss_conf             57889985888884101121101222102578634786--10058878752
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI--CLGHQLLGLAL  294 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI--ClGhQ~l~~a~  294 (396)
                      +.|+|=.+.|||=.-..-....-...-.+..++|+.||  |.||-..+.--
T Consensus        71 dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~  121 (342)
T COG0533          71 DIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLE  121 (342)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHC
T ss_conf             188899816999447789999999999998299972312279888788752


No 295
>PRK11173 two-component response regulator; Provisional
Probab=37.66  E-value=31  Score=15.34  Aligned_cols=49  Identities=10%  Similarity=0.199  Sum_probs=17.9

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCHHH-HHHCCCCEEEECCC
Q ss_conf             499996--79641023222220245413304657446-44135788998588
Q gi|254780420|r  207 HVVCID--YGIRSNLLRVLSSLGCRITIVGAETSYKD-IMSLQPDGVLLSNG  255 (396)
Q Consensus       207 kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~-i~~~~pdgi~lSnG  255 (396)
                      ||+++|  -.+-..+...|...|++|..+..-..+.+ +....||-|+|--+
T Consensus         5 ~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~   56 (237)
T PRK11173          5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDIN   56 (237)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC
T ss_conf             8999959899999999999988999999899999999986389989999389


No 296
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.52  E-value=26  Score=15.88  Aligned_cols=22  Identities=18%  Similarity=0.116  Sum_probs=7.7

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEE
Q ss_conf             2576899999985398423663
Q gi|254780420|r  125 GIDTRALTVWIRDYGVSNSVIA  146 (396)
Q Consensus       125 GIDTRaLTk~IRe~G~~~a~I~  146 (396)
                      |+=|-++-..|-+.+.-+-.|.
T Consensus        61 g~ynes~~~eI~~lnpd~VLII   82 (337)
T COG2247          61 GIYNESVLDEIIELNPDLVLII   82 (337)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEE
T ss_conf             4213999999996198659997


No 297
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=37.42  E-value=31  Score=15.31  Aligned_cols=172  Identities=12%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC----HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf             666404654434552417989999742783211257----6899999985398423663276545897898887741588
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID----TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSG  167 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID----TRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~  167 (396)
                      -+|+.+--..|.  .+.....+.+.+.+|.+|-|--    +.+....+.+.+.+.-.-... ++.    +      ..+ 
T Consensus        42 elv~~Dd~~~p~--~a~~~a~~Li~~d~V~~iiG~~~S~~~~a~~pv~~~~~~~~~~p~~~-~g~----~------~~~-  107 (348)
T cd06355          42 EAVVEDGASDWP--TFAEKARKLLTQDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQY-EGL----E------QSP-  107 (348)
T ss_pred             EEEEECCCCCHH--HHHHHHHHHHHHCCCEEEECCCCCHHHHHCCHHHHHHCCEEEEECCC-CCC----C------CCC-
T ss_conf             999857999989--99999999997189369987777176541344689839727851113-564----3------678-


Q ss_pred             CCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEE----ECC--CCCHHHHHHHHHCCCCEEE---EC-CC
Q ss_conf             74321011013333211168653445434434677777149999----679--6410232222202454133---04-65
Q gi|254780420|r  168 LKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCI----DYG--IRSNLLRVLSSLGCRITIV---GA-ET  237 (396)
Q Consensus       168 ~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvI----DfG--iK~nIlr~L~~~g~~v~Vv---p~-~~  237 (396)
                          +.. ... ..+.      .....-..+.....+.++|++|    +||  .....-..|.+.|.+|.-.   |. .+
T Consensus       108 ----~~f-~~~-~~~~------~~~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~  175 (348)
T cd06355         108 ----NVF-YTG-AAPN------QQIIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHT  175 (348)
T ss_pred             ----CEE-EEC-CCCH------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             ----889-933-7836------8999999999984799879999168513489999999999985998999981379975


Q ss_pred             CH----HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHH-HCCCCCCEEEEECHHHHHHH
Q ss_conf             74----464413578899858888841011211012221-02578634786100588787
Q gi|254780420|r  238 SY----KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICK-LVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       238 ~~----~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~-~~~~~iPilGIClGhQ~l~~  292 (396)
                      ++    ..|.+.+||.||++...++-.   ......... +....+|++|...+...+..
T Consensus       176 Dfs~~l~ki~~a~pD~v~~~~~g~~~~---~~~~q~~~~G~~~~~~~~~~~~~~~~~~~~  232 (348)
T cd06355         176 DFQSIINKIKAAKPDVVVSTVNGDSNV---AFFKQLKAAGITASKVPVLSFSVAEEELRG  232 (348)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf             679999999976999999947651248---999999981787667358884057788753


No 298
>PRK06375 consensus
Probab=37.23  E-value=31  Score=15.29  Aligned_cols=16  Identities=0%  Similarity=0.156  Sum_probs=7.7

Q ss_pred             CCCCCCCCCCHHHHCC
Q ss_conf             8973684588234204
Q gi|254780420|r   66 FPHIGNVGVNSEDFES   81 (396)
Q Consensus        66 ~P~IGNyGvn~~d~ES   81 (396)
                      .|.-.+|+++-++.|.
T Consensus       139 ~~~~~~~~~d~~~l~~  154 (381)
T PRK06375        139 VDTDDDYNIDIDNMRK  154 (381)
T ss_pred             EECCCCCCCCHHHHHH
T ss_conf             2038877979999996


No 299
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=36.96  E-value=31  Score=15.30  Aligned_cols=12  Identities=33%  Similarity=0.625  Sum_probs=7.6

Q ss_pred             HHCCCCEEEECC
Q ss_conf             413578899858
Q gi|254780420|r  243 MSLQPDGVLLSN  254 (396)
Q Consensus       243 ~~~~pdgi~lSn  254 (396)
                      ....-||+++|-
T Consensus       162 ~~~r~DGliVsT  173 (281)
T COG0061         162 ESFRGDGLIVST  173 (281)
T ss_pred             EEEECCEEEEEC
T ss_conf             999868999918


No 300
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=36.82  E-value=32  Score=15.25  Aligned_cols=94  Identities=18%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH---------CCCCCCCCHHHCCCCCCCEECCCCCCCCCCC
Q ss_conf             2576899999985398423663276545897898887741---------5887432101101333321116865344543
Q gi|254780420|r  125 GIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKN---------WSGLKGAELAKHVTVSQRRDWSEKIWKWGEE  195 (396)
Q Consensus       125 GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~---------~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~  195 (396)
                      ..+.-.+.+.||+.|..-|+..+ |..  .++.+..-+..         -|+..|+.+...+.-|-... .         
T Consensus        95 ~~~~~r~i~~Ik~~G~kaGv~ln-P~T--p~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~l-r---------  161 (220)
T COG0036          95 TEHIHRTIQLIKELGVKAGLVLN-PAT--PLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIREL-R---------  161 (220)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEC-CCC--CHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHH-H---------
T ss_conf             76899999999975985779978-999--7789998986578999985779986631479999999999-9---------


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             443467777714999967964102322222024541330
Q gi|254780420|r  196 TSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       196 ~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                       .....  .+....-+|=|++.+-++.+.+.|+++.|.-
T Consensus       162 -~~~~~--~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG  197 (220)
T COG0036         162 -AMIDE--RLDILIEVDGGINLETIKQLAAAGADVFVAG  197 (220)
T ss_pred             -HHHCC--CCCEEEEEECCCCHHHHHHHHHCCCCEEEEE
T ss_conf             -97402--4775999968969888999997399999997


No 301
>KOG1467 consensus
Probab=36.55  E-value=32  Score=15.22  Aligned_cols=80  Identities=29%  Similarity=0.359  Sum_probs=46.1

Q ss_pred             CCCCCCCEEEEEEC-----CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEE------ECCCCCCCCCCCCCCHH
Q ss_conf             67777714999967-----96410232222202454133046574464413578899------85888884101121101
Q gi|254780420|r  200 KSSDAKYHVVCIDY-----GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVL------LSNGPGDPAVTSVYSSP  268 (396)
Q Consensus       200 ~~~~~~~kIvvIDf-----GiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~------lSnGPGdP~~~~~~~~~  268 (396)
                      +.-.++++|+|+|=     |-|  .||.|..+|.+++-+-.+. +.-|+ ..-+-||      ||||-=- +..+....-
T Consensus       380 ~~~~k~frVvVVDSRP~~EG~~--~lr~Lv~~GinctYv~I~a-~syim-~evtkvfLGahailsNG~vy-sR~GTa~va  454 (556)
T KOG1467         380 KELGKKFRVVVVDSRPNLEGRK--LLRRLVDRGINCTYVLINA-ASYIM-LEVTKVFLGAHAILSNGAVY-SRVGTACVA  454 (556)
T ss_pred             HHHCCCEEEEEEECCCCCCHHH--HHHHHHHCCCCEEEEEEHH-HHHHH-HHHHEEEECHHHHHCCCCHH-HHCCHHHHH
T ss_conf             9736664899980798753479--9999997598707998616-68898-75100253214563285102-200258999


Q ss_pred             HHHHHCCCCCCEEEEECH
Q ss_conf             222102578634786100
Q gi|254780420|r  269 IICKLVDSGMPMFGICLG  286 (396)
Q Consensus       269 ~~~~~~~~~iPilGIClG  286 (396)
                      ++.  -..++|++-.|=-
T Consensus       455 lvA--na~nVPVlVCCE~  470 (556)
T KOG1467         455 LVA--NAFNVPVLVCCEA  470 (556)
T ss_pred             HHH--CCCCCCEEEEECC
T ss_conf             973--3368977998220


No 302
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006   Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other .   Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups.   This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=36.21  E-value=12  Score=18.15  Aligned_cols=16  Identities=44%  Similarity=0.675  Sum_probs=8.7

Q ss_pred             EEE-ECCCCEEEECCCCCC
Q ss_conf             268-679977898348788
Q gi|254780420|r  354 GFR-LIDQPVFSVQYHPES  371 (396)
Q Consensus       354 gi~-~~~~~~~~vQfHPEa  371 (396)
                      |+- .+|  +-=|||||=+
T Consensus       252 G~PqL~D--MEFvQFHPTG  268 (636)
T TIGR01812       252 GVPQLKD--MEFVQFHPTG  268 (636)
T ss_pred             CCCCCCC--CCCEECCCCC
T ss_conf             4643168--4405036745


No 303
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=36.10  E-value=32  Score=15.17  Aligned_cols=38  Identities=11%  Similarity=-0.071  Sum_probs=15.8

Q ss_pred             CCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             7989999742783211257689999998539842366327
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~  148 (396)
                      ..+-.+|.+.+. |+.=.=--.| +.+|..|...-+|.+.
T Consensus        39 ~~il~~l~~~G~-g~DvaS~~El-~~~~~~~~~~~Iif~g   76 (377)
T cd06843          39 PPILRALAPHVD-GFEVASGGEI-AHVRAAVPDAPLIFGG   76 (377)
T ss_pred             HHHHHHHHHCCC-CEEEECHHHH-HHHHHCCCCCCEEECC
T ss_conf             999999997699-6898299999-9998539996479889


No 304
>PRK06720 hypothetical protein; Provisional
Probab=36.09  E-value=29  Score=15.47  Aligned_cols=15  Identities=13%  Similarity=0.359  Sum_probs=5.5

Q ss_pred             HHHHHHHHCCCCEEE
Q ss_conf             232222202454133
Q gi|254780420|r  219 LLRVLSSLGCRITIV  233 (396)
Q Consensus       219 Ilr~L~~~g~~v~Vv  233 (396)
                      +.+.|.+.|++|.+.
T Consensus        32 ~A~~la~~Ga~Vvi~   46 (169)
T PRK06720         32 TALLLAKQGAKVIVT   46 (169)
T ss_pred             HHHHHHHCCCEEEEE
T ss_conf             999999869989995


No 305
>pfam01256 Carb_kinase Carbohydrate kinase. This family is related to pfam02110 and pfam00294 implying that it also is a carbohydrate kinase. (personal obs Yeats C).
Probab=36.06  E-value=33  Score=15.17  Aligned_cols=49  Identities=24%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCC----HHHHHHHCCCCC-CEEEEECHHHHHHHHC
Q ss_conf             578899858888841011211----012221025786-3478610058878752
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYS----SPIICKLVDSGM-PMFGICLGHQLLGLAL  294 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~----~~~~~~~~~~~i-PilGIClGhQ~l~~a~  294 (396)
                      .|++=+.-|--|+|.......    .-++-.++..+. |.-..|+|--+-++|-
T Consensus       166 ~p~g~~~~n~~Gn~~lAtaGsGDVLaGii~~llaqg~~~~~Aa~~av~lHg~Ag  219 (241)
T pfam01256       166 APGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNEDPYDAAIAAAWLHGAAS  219 (241)
T ss_pred             ECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             489977870689988677875468899999999778998999999999999999


No 306
>pfam07073 ROF Modulator of Rho-dependent transcription termination (ROF). This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.
Probab=36.02  E-value=33  Score=15.16  Aligned_cols=55  Identities=25%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             CCEEEEECCCCEEEEEEECCCCE--EEEEEEEECCCCCCCCCCCCCCCCCCEEEEC----CCCCCCC
Q ss_conf             96689972898799997567624--8888985378888760141614256173216----8973684
Q gi|254780420|r   12 PTAVLVLADGSVIEGMGCGATGS--IQAEICFNTSLTGYQEILTDPSYLGQIVNFT----FPHIGNV   72 (396)
Q Consensus        12 ~~A~L~LedGt~f~G~~fG~~~~--~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT----~P~IGNy   72 (396)
                      -+-.|.|.||+.++|.+..-...  ..-=++..++ .|=|++..|     +|..|+    .|++|..
T Consensus        18 y~l~l~LkdG~~i~G~A~dt~~~~~k~E~L~i~~~-~~~~~i~Ld-----~I~s~~~l~~np~f~~v   78 (80)
T pfam07073        18 YPLKLELKDGEQVEGKALDTLTNADKEECLVIEQE-GETQLLRLD-----HIASITALTENPHFGRV   78 (80)
T ss_pred             CEEEEEECCCCEEEEEEEHHEECCCCEEEEEEECC-CCEEEEECC-----EEEEEEECCCCCEEEEE
T ss_conf             87999996999999998622784764599999718-968999925-----15732776889825577


No 307
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=35.71  E-value=33  Score=15.13  Aligned_cols=55  Identities=27%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CEEEEEE--CC-----CCCHHHHHHHH---H-CCCCEEEECCCCHHHHHHCCCCEEEECCCC----CCCCCC
Q ss_conf             1499996--79-----64102322222---0-245413304657446441357889985888----884101
Q gi|254780420|r  206 YHVVCID--YG-----IRSNLLRVLSS---L-GCRITIVGAETSYKDIMSLQPDGVLLSNGP----GDPAVT  262 (396)
Q Consensus       206 ~kIvvID--fG-----iK~nIlr~L~~---~-g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGP----GdP~~~  262 (396)
                      ++|.++|  ||     +++.+-+.|++   + |+.+.-|  +-+.+|.+.+-..-++|+||-    |+|.+.
T Consensus       156 P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV--THD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV--THDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--ECCHHHHHHHCCEEEEECCCEEEEECCHHHH
T ss_conf             986863587214519999999999999998609639999--5899999864165999528805530897887


No 308
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=35.69  E-value=33  Score=15.13  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=30.3

Q ss_pred             HHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE----CHHHHHHH
Q ss_conf             0232222202454133046574-464413578899858888841011211012221025786347861----00588787
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC----LGHQLLGL  292 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC----lGhQ~l~~  292 (396)
                      .+...|...|+.|.++..-..+ +.+....||-+++--...+..  +......++. ....+||+-+.    ....+-|+
T Consensus        15 ~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~--G~~l~~~ir~-~~~~~piI~lta~~~~~~~~~al   91 (223)
T PRK10816         15 HLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDED--GLSLIRRWRS-NDVSLPILVLTARESWQDKVEVL   91 (223)
T ss_pred             HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCHHC-CCCCCCEEEEECCCCHHHHHHHH
T ss_conf             99999997899999989999999999757998999979998988--6400120110-48987689994445677899999


Q ss_pred             HCCCCCC
Q ss_conf             5285446
Q gi|254780420|r  293 ALGAQTV  299 (396)
Q Consensus       293 a~G~~~~  299 (396)
                      ..|+.-|
T Consensus        92 ~~Gaddy   98 (223)
T PRK10816         92 SAGADDY   98 (223)
T ss_pred             HCCCCEE
T ss_conf             8699886


No 309
>pfam00814 Peptidase_M22 Glycoprotease family. The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily.
Probab=35.25  E-value=15  Score=17.53  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE--CHHHHH
Q ss_conf             578899858888841011211012221025786347861--005887
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC--LGHQLL  290 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC--lGhQ~l  290 (396)
                      +.|+|-.+.|||-+........-...-....++|+.||+  -||-+.
T Consensus        49 did~IAvt~GPGl~~~L~vG~~~Ak~La~~l~~Pli~VnHleaH~~~   95 (225)
T pfam00814        49 DLDAIAVTAGPGLFTGLRVGATFAKGLALALDKPLVGVNHLEAHALA   95 (225)
T ss_pred             HCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             68999980599818869999999999999956984024668999988


No 310
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=35.21  E-value=34  Score=15.07  Aligned_cols=52  Identities=13%  Similarity=0.054  Sum_probs=35.8

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             99996796410232222202454133046574464413578899858888841
Q gi|254780420|r  208 VVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA  260 (396)
Q Consensus       208 IvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~  260 (396)
                      +++.=||-...++..+.+.|+++.-+-+..+.++..+.-.+.+.|-++ =||.
T Consensus       233 ~ilh~~g~~~~~~~~~~~~g~d~~s~D~~~~l~~a~~~~g~~~~lqGN-ldP~  284 (339)
T PRK06252        233 TILHICGDLTSILEELADCGFDGISIDEKVSVKQAKENVGNRARLIGN-VSTS  284 (339)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEEC-CCCH
T ss_conf             188865861378999996499999716999999999981899179936-8977


No 311
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=35.18  E-value=34  Score=15.07  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             499996796410232222202454133046574464413578899858888841
Q gi|254780420|r  207 HVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPA  260 (396)
Q Consensus       207 kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~  260 (396)
                      .+.+.=||-...++..+.+.|+++.-+.++.+..+..+.-++.+.|-++ =||.
T Consensus       224 ~~i~h~~G~~~~~~~~~~~~g~d~is~D~~~~l~~a~~~~~~~~~iqGN-ldP~  276 (326)
T cd03307         224 PTILHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGN-VSPS  276 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCEEEEEC-CCCH
T ss_conf             8278845875889999997199899668989999999980898169942-8848


No 312
>pfam12257 DUF3608 Protein of unknown function (DUF3608). This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with pfam00610.
Probab=34.97  E-value=24  Score=16.14  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=23.1

Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf             8899858888841011211012221025786347861005887
Q gi|254780420|r  248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLL  290 (396)
Q Consensus       248 dgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l  290 (396)
                      .-|++|+|+|==+........+-++++..++-+==||||-|=|
T Consensus       231 ~ivvITpG~GvFeVd~~ll~~T~~r~~~~gig~DlIcL~~~PL  273 (281)
T pfam12257       231 HVIIITPGTGLYDVDYDLLLETSKKLLSLEIALDIICLSQPPL  273 (281)
T ss_pred             EEEEEECCCCEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             7999918996388789999999999871775456898489987


No 313
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=34.86  E-value=34  Score=15.04  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCC
Q ss_conf             6664046544345524179899997427832112576899999985398
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGV  140 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~  140 (396)
                      |+-|..+....   ++...+.+++.+.++.-++|=+|-.|.+.+|+.|.
T Consensus        13 g~~v~~l~~~~---~~~~~~~~~i~~ad~I~v~GGnt~~ll~~l~~~g~   58 (154)
T pfam03575        13 GLEVSGLHLFT---PSVEDIEAKILKADVIYVGGGNTFHLLKLLRETGL   58 (154)
T ss_pred             CCEEEEEECCC---CCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCC
T ss_conf             99778986667---97472999998599999898759999999998682


No 314
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.85  E-value=29  Score=15.47  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=12.1

Q ss_pred             CCCCCHHHHHHHCCCCEECCCC
Q ss_conf             2417989999742783211257
Q gi|254780420|r  106 RANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus       106 rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      .++..+.++.+.++-.-+...|
T Consensus         6 ~a~~a~~~l~~~y~~~~~~eaD   27 (246)
T PRK04761          6 EAQAALEELVKRYGDVPIEEAD   27 (246)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCC
T ss_conf             9999999999985899965799


No 315
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly.  Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE  is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.73  E-value=34  Score=15.02  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             HHHHH-CCCCEEEECC--CCHHHHHHCCCCEEEECCCCCCCCCCCC-----CCHHHHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             22220-2454133046--5744644135788998588888410112-----1101222102578634786100588787
Q gi|254780420|r  222 VLSSL-GCRITIVGAE--TSYKDIMSLQPDGVLLSNGPGDPAVTSV-----YSSPIICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       222 ~L~~~-g~~v~Vvp~~--~~~~~i~~~~pdgi~lSnGPGdP~~~~~-----~~~~~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      .+.++ +|++..+..-  .+..+.+. +-|+|+++.|  |....-.     .....+++..+.+.|+.|.--|--+.+.
T Consensus        54 ~f~~l~~~~~~~l~~~~~~d~~~~l~-~ad~I~v~GG--nt~~ll~~~~~~~l~~~l~~~~~~G~~~~G~SAGa~~~~~  129 (212)
T cd03146          54 AFESLRGVEVSHLHLFDTEDPLDALL-EADVIYVGGG--NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFP  129 (212)
T ss_pred             HHHCCCCCEEEEEECCCCCCHHHHHH-HCCEEEECCC--CHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCHHHHCC
T ss_conf             86133696256875248678899997-4999998897--6999999999789899999999779889998615776167


No 316
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain.  MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=34.72  E-value=34  Score=15.02  Aligned_cols=86  Identities=31%  Similarity=0.375  Sum_probs=47.6

Q ss_pred             ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHH---HCCCCEEEECCCCCCC---CCCCCCCHHHHHHHCCCCCCEE---E
Q ss_conf             67964102322222024541330465744644---1357889985888884---1011211012221025786347---8
Q gi|254780420|r  212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIM---SLQPDGVLLSNGPGDP---AVTSVYSSPIICKLVDSGMPMF---G  282 (396)
Q Consensus       212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~---~~~pdgi~lSnGPGdP---~~~~~~~~~~~~~~~~~~iPil---G  282 (396)
                      |-..-+.-++.|++.=---.|+--=.+.+|-.   ..--|||++||==|.-   +.....+.+.+.+..  +.||+   |
T Consensus       220 ~~~~tW~di~wlr~~w~~plilKGI~~~eDA~~A~~~G~dgIiVSNHGGRQLD~a~~~id~Lp~I~~av--~~~V~~DgG  297 (361)
T cd04736         220 DASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSG  297 (361)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCEEEEECC
T ss_conf             889999999999986699745521489999999987699999975886333577741477799999971--994999489


Q ss_pred             EECHHHHH-HHHCCCCCC
Q ss_conf             61005887-875285446
Q gi|254780420|r  283 ICLGHQLL-GLALGAQTV  299 (396)
Q Consensus       283 IClGhQ~l-~~a~G~~~~  299 (396)
                      |=-|-.++ |+|+||+..
T Consensus       298 IRrG~DV~KALALGA~aV  315 (361)
T cd04736         298 IRRGSDIVKALALGANAV  315 (361)
T ss_pred             CCCHHHHHHHHHCCCCEE
T ss_conf             887899999997799989


No 317
>PRK10693 response regulator of RpoS; Provisional
Probab=34.69  E-value=33  Score=15.10  Aligned_cols=40  Identities=13%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             CCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf             783211257689999998539842366327654589789888774
Q gi|254780420|r  119 GIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAK  163 (396)
Q Consensus       119 ~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~  163 (396)
                      ..|++.|+   .+.++||+.+..--+|.-..  ..+.++..+.++
T Consensus        60 ~MP~mdGl---ell~~lr~~~~~~PVIvlTa--~~~~~d~v~al~   99 (337)
T PRK10693         60 AMPRMNGL---KFVEHLRNRGDQTPVLVISA--TENMADIAKALR   99 (337)
T ss_pred             CCCCCCHH---HHHHHHHHHCCCCEEEEEEC--CCCHHHHHHHHH
T ss_conf             99999989---99999998589964999986--899999999997


No 318
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction.  In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=34.43  E-value=34  Score=14.99  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             CEEEEE----ECC--CCCHHHHHHHHHCCCCEE---EECC-CCH----HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             149999----679--641023222220245413---3046-574----46441357889985888884101121101222
Q gi|254780420|r  206 YHVVCI----DYG--IRSNLLRVLSSLGCRITI---VGAE-TSY----KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIIC  271 (396)
Q Consensus       206 ~kIvvI----DfG--iK~nIlr~L~~~g~~v~V---vp~~-~~~----~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~  271 (396)
                      +||+++    +||  .....-..+.+.|.+|+-   +|.. +++    ..|.+.+||.||++.-+.|-.   ..... .+
T Consensus       133 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~~~~~~~---~~~~q-~~  208 (333)
T cd06331         133 KRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTLVGDSNV---AFYRQ-FA  208 (333)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHH-HH
T ss_conf             879999448617899999999999985994999997069972479999998765999999935660399---99999-99


Q ss_pred             H--HCCCCCCEEEEECHHHHHH
Q ss_conf             1--0257863478610058878
Q gi|254780420|r  272 K--LVDSGMPMFGICLGHQLLG  291 (396)
Q Consensus       272 ~--~~~~~iPilGIClGhQ~l~  291 (396)
                      .  +....+|+++..++.+.+.
T Consensus       209 ~~G~~~~~~~~~~~~~~~~~~~  230 (333)
T cd06331         209 AAGLDADRIPILSLTLDENELA  230 (333)
T ss_pred             HCCCCCCCEEEEECCCCHHHHH
T ss_conf             7599966618997545678898


No 319
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=34.43  E-value=29  Score=15.47  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             EEEEECCCCCH-HHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             99996796410-23222220245413304657446
Q gi|254780420|r  208 VVCIDYGIRSN-LLRVLSSLGCRITIVGAETSYKD  241 (396)
Q Consensus       208 IvvIDfGiK~n-Ilr~L~~~g~~v~Vvp~~~~~~~  241 (396)
                      |+-+|||+..- -+..+.++|++|+|.-+..+.++
T Consensus       130 iITvDcGi~a~e~i~~a~~~GidvIVtDHH~~~~~  164 (574)
T PRK11070        130 IVTVDNGISSHAGVAHAKSLGIPVIVTDHHLPGDT  164 (574)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             99957853029999999977999999789999765


No 320
>pfam06218 NPR2 Nitrogen permease regulator 2. This family of regulators are involved in post-translational control of nitrogen permease.
Probab=34.37  E-value=24  Score=16.09  Aligned_cols=58  Identities=14%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCC-------CHHHHCCCCCCCCCEEEEEEEECCCCCCCCC-CCCCCHHHHH
Q ss_conf             141614256173216897368458-------8234204653332102366640465443455-2417989999
Q gi|254780420|r   51 ILTDPSYLGQIVNFTFPHIGNVGV-------NSEDFESISRKNFKGAVGLVIKAEITEPSNY-RANMHFDAWL  115 (396)
Q Consensus        51 ~lTDPSY~gQIlvfT~P~IGNyGv-------n~~d~ES~~~~~~~~~~g~Iv~~~~~~~Sn~-rs~~sL~~wL  115 (396)
                      +++.|..+|..|+++.   +.|-|       ....|+-   -.+..--++|+.+.++. +.| +..+-|.++|
T Consensus        44 IIPk~~Lc~klItv~~---~~yrilG~PV~I~~~kY~R---N~f~FN~cfV~~~~~~~-~~YepvV~kLa~~l  109 (400)
T pfam06218        44 IIPKPQLCNKLITVKA---NKYRIIGYPVNIENSKYAR---NAFLFNFCFVFPYDADT-SPYEPAVKRLGKML  109 (400)
T ss_pred             ECCCHHHCCCEEEEEE---CCEEEEEEEEEECCCCCCC---CCEEEEEEEEECCCCCC-CCCHHHHHHHHHHH
T ss_conf             7179599796699996---8889996215726886434---43689899997676664-11189999999999


No 321
>CHL00067 rps2 ribosomal protein S2
Probab=34.37  E-value=35  Score=14.98  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      -||.||+-    ||...    ..+++++...+||+.|||
T Consensus       157 lPd~iii~----d~~~e----~~ai~Ea~kL~IPvIaiv  187 (227)
T CHL00067        157 LPDIVIIV----DQQEE----YTALRECIKLGIPTISIV  187 (227)
T ss_pred             CCCEEEEE----CCCCC----HHHHHHHHHCCCCEEEEE
T ss_conf             89769996----77533----799999987599989996


No 322
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=34.17  E-value=35  Score=14.96  Aligned_cols=28  Identities=11%  Similarity=0.028  Sum_probs=13.8

Q ss_pred             HHHHHHCCCCEECC---CCHHHHHHHHHHCC
Q ss_conf             99997427832112---57689999998539
Q gi|254780420|r  112 DAWLKSCGIIGLSG---IDTRALTVWIRDYG  139 (396)
Q Consensus       112 ~~wL~~~~IpgI~G---IDTRaLTk~IRe~G  139 (396)
                      .+||++++||--.-   -|....-+.|++.+
T Consensus       113 K~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~  143 (426)
T PRK13789        113 KSLMKEAKIPTASYKTFTEYSSSLSYLESEM  143 (426)
T ss_pred             HHHHHHCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf             9999972999760157368999999998579


No 323
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.98  E-value=35  Score=14.94  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=9.3

Q ss_pred             HHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             222102578634786100588787
Q gi|254780420|r  269 IICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       269 ~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      ....+++.+ |+=+|+-+.-.+|+
T Consensus       168 ~~~~l~~~~-~~~ai~~~nD~~A~  190 (268)
T cd06298         168 LAEELLEDG-KPTAAFVTDDELAI  190 (268)
T ss_pred             HHHHHHHCC-CCCEEEECCHHHHH
T ss_conf             999998369-99789966879999


No 324
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.
Probab=33.85  E-value=16  Score=17.28  Aligned_cols=140  Identities=16%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             99853984236632765458978988877415887432101101333321116865344543443467777714999967
Q gi|254780420|r  134 WIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDY  213 (396)
Q Consensus       134 ~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDf  213 (396)
                      .|+.+-+.+.- ...+-.+..++.+.+.+...|.-.+....+-|-++.+.. .+.+........... .-..+=|.+.|+
T Consensus         4 ~i~~rRSvR~f-~~~~I~~e~l~~il~aa~~APSs~n~Q~~~~i~V~d~~~-r~~la~~~~~q~~v~-~Ap~~lvf~aD~   80 (229)
T cd02146           4 TLLNHRSIRKF-KDEPIPDETLETLIAAAQSAPTSSNLQAYSVIVVTDPEL-KAKLAELAGGQPYVA-QAPVFLVFCADF   80 (229)
T ss_pred             HHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHH-HHHHHHHCCCCHHHH-CCCEEEEEEEEC
T ss_conf             89747852486-979899999999999998688846778728999948899-999998746740353-398589999751


Q ss_pred             CCCCHHHHHHHHHCCCCEEEEC---------CCC--HHHH----HHCCCCEEEECCCC-CCCCCCCCCCHHHHHHHC---
Q ss_conf             9641023222220245413304---------657--4464----41357889985888-884101121101222102---
Q gi|254780420|r  214 GIRSNLLRVLSSLGCRITIVGA---------ETS--YKDI----MSLQPDGVLLSNGP-GDPAVTSVYSSPIICKLV---  274 (396)
Q Consensus       214 GiK~nIlr~L~~~g~~v~Vvp~---------~~~--~~~i----~~~~pdgi~lSnGP-GdP~~~~~~~~~~~~~~~---  274 (396)
                         +-..+.+..+|..-.....         |+.  ++.+    .++-.-.+.|+ |- .||.        .+++++   
T Consensus        81 ---~R~~~~~~~~~~~~~~~~~~~~~~~~~~Da~iAaqn~~lAAeslGLG~~~IG-~irn~~~--------~v~elL~LP  148 (229)
T cd02146          81 ---HRLAKIAEKHGGAEAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIG-GIRNDPE--------AVIELLNLP  148 (229)
T ss_pred             ---HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH-HHHCCHH--------HHHHHHCCC
T ss_conf             ---8889999973897435573888999999999999999999998699858741-4540999--------999997889


Q ss_pred             CCCCCEEEEECHHH
Q ss_conf             57863478610058
Q gi|254780420|r  275 DSGMPMFGICLGHQ  288 (396)
Q Consensus       275 ~~~iPilGIClGhQ  288 (396)
                      +.-.|++|+|+|+=
T Consensus       149 ~~~~Pv~gL~lGyP  162 (229)
T cd02146         149 EYVFPVFGLAVGYP  162 (229)
T ss_pred             CCEEEEEEEEEECC
T ss_conf             97168999653153


No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein; InterPro: IPR013455   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Several bacterial species use the enzymes xylose isomerase and xylulokinase for xylose utilisation. This entry represents the ATP-binding cassette (ABC) subunit of the known, or predicted, high-affinity xylose ABC transporter used for xylose import. The genes encoding these proteins, which closely resemble other sugar transport ABC transporter genes, are typically found near xylose utilisation enzymes and regulatory proteins. .
Probab=33.84  E-value=34  Score=15.03  Aligned_cols=13  Identities=23%  Similarity=0.452  Sum_probs=5.0

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             0232222202454
Q gi|254780420|r  218 NLLRVLSSLGCRI  230 (396)
Q Consensus       218 nIlr~L~~~g~~v  230 (396)
                      +|+|-|.++|..+
T Consensus       182 diirDLk~~g~AC  194 (501)
T TIGR02633       182 DIIRDLKAKGVAC  194 (501)
T ss_pred             HHHHHHHHCCCEE
T ss_conf             9999997469359


No 326
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=33.48  E-value=36  Score=14.89  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             CEEEEEECCCCCH---HHHHHHHHCCCCEEEECCC---CHHHH----HHCCCCEEEECCCCCCCCCC
Q ss_conf             1499996796410---2322222024541330465---74464----41357889985888884101
Q gi|254780420|r  206 YHVVCIDYGIRSN---LLRVLSSLGCRITIVGAET---SYKDI----MSLQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       206 ~kIvvIDfGiK~n---Ilr~L~~~g~~v~Vvp~~~---~~~~i----~~~~pdgi~lSnGPGdP~~~  262 (396)
                      -||+.||||.|+-   +-+.+...-.-+.+++...   .+++|    ..+++++|++    |-|-..
T Consensus         4 griLgiD~G~kriGlAisD~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVi----GlP~~~   66 (141)
T PRK00109          4 GRILGFDVGTKRIGVAIGDPLGGTARPLETIKAQNGEPDWDALEKLLKEWQPDLLVV----GLPLNM   66 (141)
T ss_pred             CCEEEEEECCCEEEEEEECCCCCEEECCEEEECCCCHHHHHHHHHHHHHHCCCEEEE----ECCCCC
T ss_conf             888999818997999994699984744143772770689999999999839998999----447999


No 327
>pfam00853 Runt Runt domain.
Probab=33.15  E-value=14  Score=17.69  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCEECCCC
Q ss_conf             4434552417989999742783211257
Q gi|254780420|r  100 TEPSNYRANMHFDAWLKSCGIIGLSGID  127 (396)
Q Consensus       100 ~~~Sn~rs~~sL~~wL~~~~IpgI~GID  127 (396)
                      .-|+||||.++|-.   ..+|.++..|-
T Consensus        26 ~LP~HWRsNKtLp~---~fkVv~L~~v~   50 (134)
T pfam00853        26 VLPSHWRSNKTLPV---AFKVVALGEVP   50 (134)
T ss_pred             CCCCCCCCCCCCCC---CEEEEEEEECC
T ss_conf             18531124776754---16899964218


No 328
>cd01149 HutB Hemin binding protein HutB.  These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=32.90  E-value=36  Score=14.82  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=17.1

Q ss_pred             CCHHHHHHCCCCEEEECCCC
Q ss_conf             57446441357889985888
Q gi|254780420|r  237 TSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       237 ~~~~~i~~~~pdgi~lSnGP  256 (396)
                      .+.|.|++.+||-||++...
T Consensus       182 vs~E~i~~~nPDvI~v~~~~  201 (235)
T cd01149         182 LSAEALIAAQPDVILVMSRG  201 (235)
T ss_pred             CCHHHHHHHCCCEEEEECCC
T ss_conf             79999998699999995898


No 329
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.84  E-value=36  Score=14.82  Aligned_cols=55  Identities=11%  Similarity=0.120  Sum_probs=25.6

Q ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCC---CH---HHHHHHHHHCCCCCEEEEC
Q ss_conf             366640465443455241798999974278321125---76---8999999853984236632
Q gi|254780420|r   91 VGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGI---DT---RALTVWIRDYGVSNSVIAH  147 (396)
Q Consensus        91 ~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GI---DT---RaLTk~IRe~G~~~a~I~~  147 (396)
                      -|+||.++... .--+-...+.+.++++|.-.+-..   |.   +...+.+++++ .-|+|..
T Consensus         2 Igvivp~l~np-f~~~i~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~-vDgiIl~   62 (267)
T cd06283           2 IGVIVADITNP-FSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQ-VDGLIVN   62 (267)
T ss_pred             EEEEECCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEC
T ss_conf             99997998759-9999999999999986998999978999899999999999669-9999985


No 330
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.83  E-value=36  Score=14.82  Aligned_cols=14  Identities=21%  Similarity=0.043  Sum_probs=6.5

Q ss_pred             HHHHHHHCCCCEEC
Q ss_conf             89999742783211
Q gi|254780420|r  111 FDAWLKSCGIIGLS  124 (396)
Q Consensus       111 L~~wL~~~~IpgI~  124 (396)
                      +-+.|++.+||.+.
T Consensus        70 ~~~~l~~~~iPvV~   83 (265)
T cd06285          70 FLDELTRRGVPFVL   83 (265)
T ss_pred             HHHHHHHCCCCEEE
T ss_conf             99999967997899


No 331
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=32.82  E-value=36  Score=14.81  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=22.2

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             5788998588888410112110122210257863478610
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      -||.||+.+    |..    ...+++++...+||+.|||=
T Consensus       137 ~Pd~vii~d----~~~----~~~ai~Ea~~l~IP~I~ivD  168 (205)
T pfam00318       137 LPDLVIVVD----PNK----EHIAIKEASKLGIPVIAIVD  168 (205)
T ss_pred             CCCEEEEEC----CCC----CHHHHHHHHHCCCCEEEECC
T ss_conf             898699857----864----53899999875997565405


No 332
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=32.53  E-value=37  Score=14.78  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             HHHHHHCCCCEEC-----CCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH---------CCCCCCCCHHHCC
Q ss_conf             9999742783211-----2576899999985398423663276545897898887741---------5887432101101
Q gi|254780420|r  112 DAWLKSCGIIGLS-----GIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKN---------WSGLKGAELAKHV  177 (396)
Q Consensus       112 ~~wL~~~~IpgI~-----GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~---------~~~~~~~dL~~~V  177 (396)
                      -+++.+.|.--|+     --+-..+.++||+.|. ++.|+-.++.  +++.+...+..         .|+..|+.+...+
T Consensus        74 i~~~~~~g~d~it~H~Ea~~~~~~~i~~Ik~~g~-k~GlAlnP~T--~i~~~~~~l~~vD~VLvMtV~PGf~GQ~Fi~~~  150 (210)
T PRK08005         74 LPWLAAIRPGWIFIHAESVQNPSEILADIRAIGA-KAGLALNPAT--PLLPYRYLALQLDALMIMTSEPDGRGQQFIAAM  150 (210)
T ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCCC--CHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             9999972998599935677699999999997498-0788837999--879987304007989998778999872117889


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             333321116865344543443467777714999967964102322222024541330
Q gi|254780420|r  178 TVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       178 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                      --|-.. .              +.......| -+|=|++...++.|.+.|+++.|+-
T Consensus       151 ~~KI~~-~--------------r~~~~~~~I-~vDGGIn~~t~~~~~~aGad~~V~G  191 (210)
T PRK08005        151 CEKVSQ-S--------------REHFPAAEC-WADGGITLRAARLLAAAGAQHLVIG  191 (210)
T ss_pred             HHHHHH-H--------------HHHCCCCCE-EEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             999999-9--------------962877888-9978878899999998699999979


No 333
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=32.16  E-value=37  Score=14.74  Aligned_cols=11  Identities=36%  Similarity=0.401  Sum_probs=5.9

Q ss_pred             HHHHHHHHCCC
Q ss_conf             23222220245
Q gi|254780420|r  219 LLRVLSSLGCR  229 (396)
Q Consensus       219 Ilr~L~~~g~~  229 (396)
                      .+++|.++|++
T Consensus       112 a~~~L~~~G~~  122 (273)
T cd01541         112 ATEYLIELGHR  122 (273)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999856996


No 334
>cd01144 BtuF Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.04  E-value=18  Score=17.03  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=17.3

Q ss_pred             CCCHHHHHHCCCCEEEECCCC
Q ss_conf             657446441357889985888
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      ..+.|.|.+.+||-||++..+
T Consensus       176 ~vs~E~i~~~nPDvI~v~~~~  196 (245)
T cd01144         176 QVSWEDVLAANPDVIVLSPCG  196 (245)
T ss_pred             CCCHHHHHHHCCCEEEEECCC
T ss_conf             757889998599999995898


No 335
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.03  E-value=38  Score=14.73  Aligned_cols=57  Identities=25%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCC---EEEECCC-CHHHHH---HCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             232222202454---1330465-744644---1357889985888884101121101222102578
Q gi|254780420|r  219 LLRVLSSLGCRI---TIVGAET-SYKDIM---SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSG  277 (396)
Q Consensus       219 Ilr~L~~~g~~v---~Vvp~~~-~~~~i~---~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~  277 (396)
                      |-+.|.++|++|   ++|+=+- .+.+.+   ..++|-||+|+|=| |.+-+. -.+.+.+++...
T Consensus        26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG-PT~DDi-T~e~vAka~g~~   89 (255)
T COG1058          26 LADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG-PTHDDL-TAEAVAKALGRP   89 (255)
T ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCHH-HHHHHHHHHCCC
T ss_conf             9999996496189999639999999999999971899899879858-996276-899999982998


No 336
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase; InterPro: IPR006364   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase . In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, CobI catalyses the methylation of precorrin-2 to precorrin-3a.   This entry represents CbiL and CobI precorrin-2 C20-methyltransferases (2.1.1.130 from EC), both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme. This entry also includes other closely related S-adenosylmethionine-dependent methyltransferases involved in Cbl biosynthesis.  ; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=31.85  E-value=22  Score=16.36  Aligned_cols=42  Identities=26%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CCCEEEEEECC--CCCH----HHHHHHH--HCCCCEEEECCCCHHHHHHC
Q ss_conf             77149999679--6410----2322222--02454133046574464413
Q gi|254780420|r  204 AKYHVVCIDYG--IRSN----LLRVLSS--LGCRITIVGAETSYKDIMSL  245 (396)
Q Consensus       204 ~~~kIvvIDfG--iK~n----Ilr~L~~--~g~~v~Vvp~~~~~~~i~~~  245 (396)
                      .+..||++=.|  .=||    +.+.|..  .+..+.++|-=||+..+-+.
T Consensus        99 ~G~~Vaf~TlGDP~~YSTF~yl~~~l~~~~~~~~~e~vPGitS~~a~As~  148 (243)
T TIGR01467        99 EGRDVAFITLGDPSLYSTFSYLLQRLKEALPGIEVEVVPGITSFAACASA  148 (243)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
T ss_conf             69828999845720223799999999863089617997488717899998


No 337
>pfam07090 DUF1355 Protein of unknown function (DUF1355). This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown.
Probab=31.78  E-value=32  Score=15.24  Aligned_cols=47  Identities=19%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHH----HH-CCCCEEEECC
Q ss_conf             499996796410232222202454133046574464----41-3578899858
Q gi|254780420|r  207 HVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDI----MS-LQPDGVLLSN  254 (396)
Q Consensus       207 kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i----~~-~~pdgi~lSn  254 (396)
                      .-+-.+.|+++ ++..|.+.|.+|+-.|.....+++    .+ .++|.||||.
T Consensus        23 ~s~~~~~ga~~-~~~al~~~~~~v~~mp~h~a~~~FP~t~eeL~~YD~VILSD   74 (183)
T pfam07090        23 TSLKYDEGADL-LLFAILRSPYDVDYMPAHDAQIAFPVTLEELSAYDAVILSD   74 (183)
T ss_pred             CCCCHHCCHHH-HHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHCCCEEEEEE
T ss_conf             43110048799-99999867951897423104645773888884088899950


No 338
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237   This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=31.74  E-value=38  Score=14.69  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             CCCCCHHHHHHH-HHCCCCEEEECCCCHHHHHH-CCC-CEEEECCCCCCCC
Q ss_conf             796410232222-20245413304657446441-357-8899858888841
Q gi|254780420|r  213 YGIRSNLLRVLS-SLGCRITIVGAETSYKDIMS-LQP-DGVLLSNGPGDPA  260 (396)
Q Consensus       213 fGiK~nIlr~L~-~~g~~v~Vvp~~~~~~~i~~-~~p-dgi~lSnGPGdP~  260 (396)
                      ||.-+.+++.+. +.|.+|.-+|.+ ..++|.+ ++| --|+.=--|-+|.
T Consensus       108 YGCTfall~~~ltkfgi~v~f~~~~-~pee~~a~i~dnT~ivYfETPaNPt  157 (392)
T TIGR01328       108 YGCTFALLEDALTKFGIDVKFVDMA-SPEEVKAAIKDNTKIVYFETPANPT  157 (392)
T ss_pred             CCCHHHHHHHHHHHHCCEEEEECCC-CHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             2014899873267737527983178-7799998448997799986599875


No 339
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.61  E-value=38  Score=14.68  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=22.0

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC---CCCH---HHHHHHHHHCCCCCEEEEC
Q ss_conf             666404654434552417989999742783211---2576---8999999853984236632
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGIIGLS---GIDT---RALTVWIRDYGVSNSVIAH  147 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~---GIDT---RaLTk~IRe~G~~~a~I~~  147 (396)
                      |+||.++.. |.--+--..+.+.++++|.-.+-   +-|.   +...+.+++++ .-|+|..
T Consensus         3 Gvivp~i~n-pff~~i~~~ie~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~-vdGiIi~   62 (268)
T cd06270           3 GLVVSDLDG-PFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERR-CDALILH   62 (268)
T ss_pred             EEEECCCCC-HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf             999778877-99999999999999985999999958999899999999999659-9999995


No 340
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=31.60  E-value=38  Score=14.68  Aligned_cols=11  Identities=27%  Similarity=0.323  Sum_probs=5.0

Q ss_pred             HHHHHHHHCCC
Q ss_conf             23222220245
Q gi|254780420|r  219 LLRVLSSLGCR  229 (396)
Q Consensus       219 Ilr~L~~~g~~  229 (396)
                      .+++|.++|++
T Consensus       105 a~~~L~~~Ghr  115 (259)
T cd01542         105 LGEYLAQQGHK  115 (259)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999982898


No 341
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=31.42  E-value=38  Score=14.66  Aligned_cols=38  Identities=16%  Similarity=0.061  Sum_probs=16.3

Q ss_pred             CCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             7989999742783211257689999998539842366327
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~  148 (396)
                      ..+-.+|.+.+. |+.=+=.-.| ++.+..|.....|...
T Consensus        62 ~~il~~l~~~G~-g~DvaS~gEl-~~al~~G~~~~~Ii~~   99 (398)
T TIGR03099        62 PALLAHMAPLVD-GFDVASAGEL-AVALDTGYDPGCISFA   99 (398)
T ss_pred             HHHHHHHHHCCC-CEEEECHHHH-HHHHHCCCCCHHEEEC
T ss_conf             999999998199-2999699999-9999849991001778


No 342
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.96  E-value=24  Score=16.12  Aligned_cols=40  Identities=25%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             CCCCEEEEECCCCCEEEEH--HHCCC-CCEEEEEECCCCEEEE
Q ss_conf             7897099961457615703--43699-8289999889980872
Q gi|254780420|r  315 ISNGTVEIVSMNHGFAIDA--SSLPA-GLEETHISLFDSSNCG  354 (396)
Q Consensus       315 ~~t~kv~iTsqNHg~~v~~--~slp~-~~~v~~~~~nD~tieg  354 (396)
                      +.-+.+|++++||||.+..  +.+|. .....|++--|.-.+|
T Consensus       171 LDvNNiyVna~NHG~d~~~yL~~~p~~rV~eIHlAGh~~~~~G  213 (282)
T COG3220         171 LDVNNIYVNAVNHGFDPEEYLAALPVERVGEIHLAGHDEEEEG  213 (282)
T ss_pred             EEECCEEEECCCCCCCHHHHHHCCCHHHHEEEEECCCCCCCCC
T ss_conf             9614327850136888999984189878411122367767687


No 343
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=30.89  E-value=39  Score=14.60  Aligned_cols=21  Identities=24%  Similarity=0.074  Sum_probs=10.8

Q ss_pred             EEEE-CCCCCHHHHHHHHHCCC
Q ss_conf             9996-79641023222220245
Q gi|254780420|r  209 VCID-YGIRSNLLRVLSSLGCR  229 (396)
Q Consensus       209 vvID-fGiK~nIlr~L~~~g~~  229 (396)
                      |..| +..=+..+++|.++|++
T Consensus        96 V~~Dn~~~~~~a~~~L~~~Ghr  117 (264)
T cd06274          96 VVSDNRDGAAELTRELLAAPPE  117 (264)
T ss_pred             EEECHHHHHHHHHHHHHHCCCC
T ss_conf             9976699999999999985996


No 344
>KOG2708 consensus
Probab=30.74  E-value=28  Score=15.58  Aligned_cols=50  Identities=26%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE--ECHHHHHHHHC
Q ss_conf             357889985888884101121101222102578634786--10058878752
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI--CLGHQLLGLAL  294 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI--ClGhQ~l~~a~  294 (396)
                      .+.|-|-..-|||--+.....++....-.+-.++|+.|+  |.||--++...
T Consensus        69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~i  120 (336)
T KOG2708          69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREI  120 (336)
T ss_pred             HHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEE
T ss_conf             2287899727898787626689999999998279832301211113221022


No 345
>PRK10765 nitroreductase A; Provisional
Probab=30.70  E-value=20  Score=16.66  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=26.1

Q ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCC
Q ss_conf             9998539842366327654589789888774158874321011013333
Q gi|254780420|r  133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQ  181 (396)
Q Consensus       133 k~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~  181 (396)
                      ..|+++-+.+.- ...+-.+.+++.+.+.+...|.-.+....+-+-++.
T Consensus         6 e~i~~rRSiR~F-~~~pv~~e~l~~il~aa~~ApSs~n~Q~~siI~V~D   53 (240)
T PRK10765          6 ELILGHRSIRHF-TDEPISEAQLEAIINAARAASSSSFLQCSSIIRITD   53 (240)
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf             999976753477-999899999999999999786813588748999659


No 346
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.36  E-value=40  Score=14.54  Aligned_cols=16  Identities=6%  Similarity=0.129  Sum_probs=7.7

Q ss_pred             HHHHC--CCCEEEECCCC
Q ss_conf             64413--57889985888
Q gi|254780420|r  241 DIMSL--QPDGVLLSNGP  256 (396)
Q Consensus       241 ~i~~~--~pdgi~lSnGP  256 (396)
                      +++..  +.|+||-.|-+
T Consensus       195 ~lL~~~Pdi~aI~~~ND~  212 (305)
T cd06324         195 NLLKRYPDVRLIWAANDQ  212 (305)
T ss_pred             HHHHHCCCCCEEEECCCH
T ss_conf             999739999889978857


No 347
>PRK00124 hypothetical protein; Validated
Probab=30.28  E-value=10  Score=18.71  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHH---HHCCCCCCEEEEECHHHH
Q ss_conf             79641023222220245413304657446441357889985888884101121101222---102578634786100588
Q gi|254780420|r  213 YGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIIC---KLVDSGMPMFGICLGHQL  289 (396)
Q Consensus       213 fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~---~~~~~~iPilGIClGhQ~  289 (396)
                      |=+|.-|.|.=.++++.|++|-+.. ...-..-.-.-|+.+.|+   ...+.++.+...   -++...+|+-..||+-..
T Consensus        10 CPVk~~i~~~a~r~~i~v~~Van~~-~~~~~~~~i~~v~V~~g~---DaAD~~I~~~~~~gDiVIT~DipLAa~~l~Kga   85 (149)
T PRK00124         10 CPVKEIIYRVAERHGIPVTLVANHF-LRVPYSPFIRTLYVDSGF---DAADNEIVERAEKGDIVITQDYPLAAEALEKGA   85 (149)
T ss_pred             CCHHHHHHHHHHHHCCEEEEEECCC-CCCCCCCCEEEEEECCCC---CHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCC
T ss_conf             9409999999998697699996897-069998764899989997---639999998388999999698899999998798


Q ss_pred             HHHHCCCC
Q ss_conf             78752854
Q gi|254780420|r  290 LGLALGAQ  297 (396)
Q Consensus       290 l~~a~G~~  297 (396)
                      +++..-|+
T Consensus        86 ~vi~prG~   93 (149)
T PRK00124         86 IVLNPRGE   93 (149)
T ss_pred             EEECCCCC
T ss_conf             99999986


No 348
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=30.27  E-value=35  Score=14.93  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=25.3

Q ss_pred             EEECCCCEEEECC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             6867997789834-878877670016899999999997
Q gi|254780420|r  355 FRLIDQPVFSVQY-HPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       355 i~~~~~~~~~vQf-HPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |++++.|+||.-| |||-+.---=+.-=|.-|+..|-+
T Consensus       107 IEn~~HpF~GLDFvHtELs~~~GW~~P~FAaFVSSIIE  144 (191)
T PRK05417        107 IENKDHPFYGLDFVHTELSQEQGWSAPGFAAFVSSIIE  144 (191)
T ss_pred             ECCCCCCCCCCCEECHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             11678873463310110023358887308889999986


No 349
>PRK11749 putative oxidoreductase; Provisional
Probab=30.16  E-value=40  Score=14.52  Aligned_cols=38  Identities=29%  Similarity=0.520  Sum_probs=22.7

Q ss_pred             HHHHHCCCCE---EEECCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             2222024541---33046574464413578899858888841
Q gi|254780420|r  222 VLSSLGCRIT---IVGAETSYKDIMSLQPDGVLLSNGPGDPA  260 (396)
Q Consensus       222 ~L~~~g~~v~---Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~  260 (396)
                      .|.+.|+++.   .+.-+.+++++.+ ++|+|||.-|=..|.
T Consensus       199 ~i~~~GV~~~~n~~vG~ditl~~L~~-~ydAV~lAtGa~~~r  239 (460)
T PRK11749        199 RLLKLGVEIRTNTAVGRDITLDELRA-EYDAVFIGTGLGLPR  239 (460)
T ss_pred             HHHHCCCEEECCEEECCCCCHHHHHH-CCCEEEEECCCCCCC
T ss_conf             99853978985558566432887741-148899944789886


No 350
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=29.93  E-value=41  Score=14.49  Aligned_cols=26  Identities=15%  Similarity=0.420  Sum_probs=18.1

Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             99967964102322222024541330
Q gi|254780420|r  209 VCIDYGIRSNLLRVLSSLGCRITIVG  234 (396)
Q Consensus       209 vvIDfGiK~nIlr~L~~~g~~v~Vvp  234 (396)
                      ..+|=|+....+..|.+.|+++.|.-
T Consensus       169 I~vDGGIn~~ti~~l~~~Gad~~V~G  194 (201)
T pfam00834       169 IEVDGGVNLDNIPQIAEAGADVLVAG  194 (201)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             99989888999999998799999978


No 351
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=29.79  E-value=23  Score=16.17  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             CCCEEEEEECC------CCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             77149999679------641023222220245413304657446441
Q gi|254780420|r  204 AKYHVVCIDYG------IRSNLLRVLSSLGCRITIVGAETSYKDIMS  244 (396)
Q Consensus       204 ~~~kIvvIDfG------iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~  244 (396)
                      .+..|+++=.|      .=..|++.|..+|+++.+||-=+|+...-+
T Consensus        89 ~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa  135 (234)
T COG2243          89 AGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAA  135 (234)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
T ss_conf             69928999814852888799999985306973599589436999999


No 352
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.70  E-value=41  Score=14.46  Aligned_cols=42  Identities=19%  Similarity=0.122  Sum_probs=19.4

Q ss_pred             CHHHHHHHCCCCEECC-----CCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf             9899997427832112-----576899999985398423663276545
Q gi|254780420|r  110 HFDAWLKSCGIIGLSG-----IDTRALTVWIRDYGVSNSVIAHHPDGQ  152 (396)
Q Consensus       110 sL~~wL~~~~IpgI~G-----IDTRaLTk~IRe~G~~~a~I~~~~~~~  152 (396)
                      .+.+.|+++++.-..-     -|.+.|++..-+.|. ..+|+.+.|+.
T Consensus        28 ~i~~~l~~~g~~~~~~~t~~~~~a~~la~~a~~~g~-d~vv~~GGDGT   74 (304)
T PRK11914         28 RAIARLHHRGVDVVEIVGTDAHHARHLVAAALAKGT-DALVVVGGDGV   74 (304)
T ss_pred             HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEEEEECCHH
T ss_conf             999999987990999932787899999998886499-69999956259


No 353
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.55  E-value=41  Score=14.45  Aligned_cols=82  Identities=16%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             CCEEEEEECC--CCCHHHHHHHHHCCC-CEEEECCCCHHHHHHC-CCCEEEECCCCCCCCCCCCCCHHHHHHHCC--CCC
Q ss_conf             7149999679--641023222220245-4133046574464413-578899858888841011211012221025--786
Q gi|254780420|r  205 KYHVVCIDYG--IRSNLLRVLSSLGCR-ITIVGAETSYKDIMSL-QPDGVLLSNGPGDPAVTSVYSSPIICKLVD--SGM  278 (396)
Q Consensus       205 ~~kIvvIDfG--iK~nIlr~L~~~g~~-v~Vvp~~~~~~~i~~~-~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~--~~i  278 (396)
                      .-||.+||-=  .-..|-|++.+.|++ +.|+..+++ +.+..+ .||+||+..| |.=   + .+.+.....+.  +++
T Consensus        58 ~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap-~~L~~~~~~daiFIGGg-~~i---~-~ile~~~~~l~~ggrl  131 (187)
T COG2242          58 SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP-EALPDLPSPDAIFIGGG-GNI---E-EILEAAWERLKPGGRL  131 (187)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHCCCCCCCEEEECCC-CCH---H-HHHHHHHHHCCCCCEE
T ss_conf             8559999258889999999999849996799954645-76369999999998798-777---8-9999999971868769


Q ss_pred             CEEEEECHHHHHHH
Q ss_conf             34786100588787
Q gi|254780420|r  279 PMFGICLGHQLLGL  292 (396)
Q Consensus       279 PilGIClGhQ~l~~  292 (396)
                      =+=-|-|=+...++
T Consensus       132 V~naitlE~~~~a~  145 (187)
T COG2242         132 VANAITLETLAKAL  145 (187)
T ss_pred             EEEEECHHHHHHHH
T ss_conf             99860088899999


No 354
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232   This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process.
Probab=29.52  E-value=29  Score=15.56  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCC--CEEEE--CCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-CHHHHHHHCC--CCC
Q ss_conf             149999679641023222220245--41330--4657446441357889985888884101121-1012221025--786
Q gi|254780420|r  206 YHVVCIDYGIRSNLLRVLSSLGCR--ITIVG--AETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-SSPIICKLVD--SGM  278 (396)
Q Consensus       206 ~kIvvIDfGiK~nIlr~L~~~g~~--v~Vvp--~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-~~~~~~~~~~--~~i  278 (396)
                      -+|++|||||    +=+|.+..++  .+.+-  -+-+++.|.+.+.|.=-+      |++.+.. ....++.+.+  -+.
T Consensus       309 g~i~~~DFGI----VG~l~~~~r~~LAE~l~Gf~~rDY~~VA~~H~~aGyv------p~~~d~~~f~~a~R~~~EP~~g~  378 (452)
T TIGR01982       309 GKIIALDFGI----VGRLSEEDRRYLAEILYGFINRDYRRVAEVHFDAGYV------PSDTDMAEFEQAIRAIGEPIFGQ  378 (452)
T ss_pred             CEEEEEECCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8089985374----2001378899999999999854299999999862588------84356999999862001543366


Q ss_pred             CEEEEECHHHHHHHHC
Q ss_conf             3478610058878752
Q gi|254780420|r  279 PMFGICLGHQLLGLAL  294 (396)
Q Consensus       279 PilGIClGhQ~l~~a~  294 (396)
                      |+=-|-+|+-|..+--
T Consensus       379 Pl~~IS~g~~L~~LF~  394 (452)
T TIGR01982       379 PLKEISVGKLLAKLFK  394 (452)
T ss_pred             CHHHCCHHHHHHHHHH
T ss_conf             6774028999999999


No 355
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=29.22  E-value=42  Score=14.41  Aligned_cols=89  Identities=20%  Similarity=0.217  Sum_probs=36.9

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             499996--796410232222202454133046574-46441357889985888884101121101222102578634786
Q gi|254780420|r  207 HVVCID--YGIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       207 kIvvID--fGiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      ||+++|  --+-..+.+.|.+.|++|.+...-..+ +.+....||-|+|-=+-  |...+......++..  ...||+=+
T Consensus         3 kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~L--P~~dG~~l~~~iR~~--~~~PiI~l   78 (240)
T PRK10701          3 TIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIML--PGKDGMTICRDLRPK--WSGPIVLL   78 (240)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCEEEEECCCC--CCCCEEEE
T ss_conf             89999799999999999998879999998999999999861799999992899--767887876311025--89878999


Q ss_pred             E-CH---HHHHHHHCCCCCC
Q ss_conf             1-00---5887875285446
Q gi|254780420|r  284 C-LG---HQLLGLALGAQTV  299 (396)
Q Consensus       284 C-lG---hQ~l~~a~G~~~~  299 (396)
                      . .+   -.+.|+..||.-|
T Consensus        79 ta~~~~~d~v~gl~~GADDY   98 (240)
T PRK10701         79 TSLDSDMNHILALEMGACDY   98 (240)
T ss_pred             EECCCHHHHHHHHHCCCCEE
T ss_conf             40575788999997688776


No 356
>KOG0196 consensus
Probab=29.21  E-value=29  Score=15.55  Aligned_cols=47  Identities=21%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE-------CCCCCC
Q ss_conf             99967964102322222024541330465744644135788998-------588888
Q gi|254780420|r  209 VCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL-------SNGPGD  258 (396)
Q Consensus       209 vvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l-------SnGPGd  258 (396)
                      +++||-+||-= ....++..  ..+...++.-.|..++|+.+.+       ..|+|.
T Consensus       472 ~ildYEvky~e-k~~~e~~~--~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~  525 (996)
T KOG0196         472 VILDYEVKYYE-KDEDERSY--STLKTKTTTATITGLKPGTVYVFQVRARTAAGYGP  525 (996)
T ss_pred             CCEEEEEEEEE-CCCCCCCE--EEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCC
T ss_conf             53157999860-44564411--57750451688624689867999999832567788


No 357
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.15  E-value=42  Score=14.40  Aligned_cols=25  Identities=32%  Similarity=0.398  Sum_probs=16.2

Q ss_pred             CCCCEECCCC-----HHHHHHHHHHCCCCC
Q ss_conf             2783211257-----689999998539842
Q gi|254780420|r  118 CGIIGLSGID-----TRALTVWIRDYGVSN  142 (396)
Q Consensus       118 ~~IpgI~GID-----TRaLTk~IRe~G~~~  142 (396)
                      ..++||+|-.     |-.|...|+..|+..
T Consensus        89 ~~~I~ITGTNGKsTtt~li~~iL~~~g~~~  118 (401)
T PRK03815         89 PFSIWISGTNGKTTTTQMLTHLLEDFGAVS  118 (401)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             874899847777899999999998669813


No 358
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=29.07  E-value=42  Score=14.39  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             EEEEEEC-CCCCHHHH----HHHHHCCCCEEEECCC--------CHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             4999967-96410232----2222024541330465--------7446441--357889985888884101121101222
Q gi|254780420|r  207 HVVCIDY-GIRSNLLR----VLSSLGCRITIVGAET--------SYKDIMS--LQPDGVLLSNGPGDPAVTSVYSSPIIC  271 (396)
Q Consensus       207 kIvvIDf-GiK~nIlr----~L~~~g~~v~Vvp~~~--------~~~~i~~--~~pdgi~lSnGPGdP~~~~~~~~~~~~  271 (396)
                      -+++.|| |+.-+-+.    .|++.|+.+.|+.++.        .++.+..  ..|.++++|+  +||....+...+..+
T Consensus        24 ~~~~~~y~Gltv~~~~~LR~~l~~~g~~~~VvKNtL~k~Al~~t~~~~l~~~l~G~tav~f~~--eD~~~~aK~~~~f~K  101 (164)
T PRK00099         24 SAVVADYRGLTVAQMTELRKELREAGVELKVVKNTLARRALEGTGFEGLDDLLKGPTAIAFSN--EDPVAAAKVLKDFAK  101 (164)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCHHCCCCEEEEEEC--CCCCHHHHHHHHHHH
T ss_conf             699997689966999999999997696799960389999995468755410147875999826--886278999999986


Q ss_pred             HHCCCCCCEEEEECHHHHHHHH
Q ss_conf             1025786347861005887875
Q gi|254780420|r  272 KLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       272 ~~~~~~iPilGIClGhQ~l~~a  293 (396)
                       -. .+.=+.|-++.-+++...
T Consensus       102 -~~-~~~~ikgg~~eg~~l~~~  121 (164)
T PRK00099        102 -DN-KKLEIKGGAFEGKVLSAE  121 (164)
T ss_pred             -HC-CCCEEEEEEECCEECCHH
T ss_conf             -45-882789988778453899


No 359
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.04  E-value=42  Score=14.39  Aligned_cols=11  Identities=36%  Similarity=0.712  Sum_probs=4.4

Q ss_pred             HHHHHHHHCCC
Q ss_conf             23222220245
Q gi|254780420|r  219 LLRVLSSLGCR  229 (396)
Q Consensus       219 Ilr~L~~~g~~  229 (396)
                      .+++|.++|++
T Consensus       106 a~~~L~~~Gh~  116 (266)
T cd06278         106 AAELLLAKGCR  116 (266)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999980998


No 360
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase; InterPro: IPR012813    Members of this family are mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC). It acts sequentially after mannosyl-3-phosphoglycerate synthase (2.4.1.217 from EC) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=29.01  E-value=41  Score=14.42  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=22.4

Q ss_pred             CEEEEEECCCCCHHHHHHHH---------H-C---CC-CEEEEC-CCCHHHHHHC
Q ss_conf             14999967964102322222---------0-2---45-413304-6574464413
Q gi|254780420|r  206 YHVVCIDYGIRSNLLRVLSS---------L-G---CR-ITIVGA-ETSYKDIMSL  245 (396)
Q Consensus       206 ~kIvvIDfGiK~nIlr~L~~---------~-g---~~-v~Vvp~-~~~~~~i~~~  245 (396)
                      -.-.||.+|.++.=+|...+         . .   |- +-+..| +++.++|..+
T Consensus        88 G~y~V~eLG~~~~~IR~~L~~alaeacte~E~se~~Gn~~~~~yg~~t~Eev~~l  142 (248)
T TIGR02461        88 GGYEVIELGKPVAEIRAALKSALAEACTEIEASEEAGNLSIKGYGDMTAEEVARL  142 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHH
T ss_conf             7606742367678999998999999999987444314501112278888899986


No 361
>cd01147 HemV-2 Metal binding protein HemV-2.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.82  E-value=42  Score=14.36  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             CCCHHHHHHCCCCEEEECCCCCC
Q ss_conf             65744644135788998588888
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGPGD  258 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGPGd  258 (396)
                      ..+.|.|++.+||-||++.+.++
T Consensus       202 ~vs~E~i~~~nPDvI~~~~~~~~  224 (262)
T cd01147         202 EVSPEQILLWNPDVIFLDTGSFY  224 (262)
T ss_pred             CCCHHHHHHHCCCEEEEECCCCC
T ss_conf             46999999859998999278753


No 362
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.43  E-value=43  Score=14.32  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEEC--C-CCCHHHHHHHHHC--CCCEEEECCC----CHHHHH-------H-CCCCEEEECCCCCCCCCCCC
Q ss_conf             777714999967--9-6410232222202--4541330465----744644-------1-35788998588888410112
Q gi|254780420|r  202 SDAKYHVVCIDY--G-IRSNLLRVLSSLG--CRITIVGAET----SYKDIM-------S-LQPDGVLLSNGPGDPAVTSV  264 (396)
Q Consensus       202 ~~~~~kIvvIDf--G-iK~nIlr~L~~~g--~~v~Vvp~~~----~~~~i~-------~-~~pdgi~lSnGPGdP~~~~~  264 (396)
                      |.-..+|+||==  | +-+-|++.+.+|.  |++.++|.-.    ...+|.       . .++|.|+|.=|=|..++.-.
T Consensus       132 P~~P~~IgvITS~tgAa~~Di~~~~~~R~p~~~i~l~p~~VQG~~A~~~I~~ai~~~~~~~~~DvIIi~RGGGS~eDL~~  211 (443)
T PRK00286        132 PFFPKRIGVITSPTGAAIRDILTVLSRRFPSVEVIIYPTLVQGEGAAASIVEAIERANARGEVDVLIVARGGGSLEDLWA  211 (443)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             87855799983684389999999985049965999981456265479999999999852248888999368788889765


Q ss_pred             CCH-HHHHHHCCCCCCEEEEECHHH
Q ss_conf             110-122210257863478610058
Q gi|254780420|r  265 YSS-PIICKLVDSGMPMFGICLGHQ  288 (396)
Q Consensus       265 ~~~-~~~~~~~~~~iPilGIClGhQ  288 (396)
                      ..- .+.+.+...++||.- .-||+
T Consensus       212 FNdE~varaI~~s~iPVIS-aIGHE  235 (443)
T PRK00286        212 FNDEAVARAIAASKIPVIS-AVGHE  235 (443)
T ss_pred             CCCHHHHHHHHHCCCCEEE-CCCCC
T ss_conf             1879999999848997895-14667


No 363
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly.  Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.43  E-value=43  Score=14.32  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             CCCEEEEEECCC------CCHHHHHHHHHCCCCEEEECCC--CHHHHHH--CCCCEEEECCCCCCCCCCCCC-----CHH
Q ss_conf             771499996796------4102322222024541330465--7446441--357889985888884101121-----101
Q gi|254780420|r  204 AKYHVVCIDYGI------RSNLLRVLSSLGCRITIVGAET--SYKDIMS--LQPDGVLLSNGPGDPAVTSVY-----SSP  268 (396)
Q Consensus       204 ~~~kIvvIDfGi------K~nIlr~L~~~g~~v~Vvp~~~--~~~~i~~--~~pdgi~lSnGPGdP~~~~~~-----~~~  268 (396)
                      ...||++|-...      -.+..+.+.++||++..++.-.  .-+++.+  .+-|+|+++  .||+...-..     ...
T Consensus        28 ~~~~i~~iptAs~~~~~~~~~~~~~~~~lG~~~~~l~~~~~a~~~~~~~~l~~ad~i~~~--GG~~~~~~~~~~~t~~~~  105 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVG--GGNQLRLLSVLRETPLLD  105 (210)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCEEEEC--CCCHHHHHHHHHHCCHHH
T ss_conf             996499994898880899999999999749948875122567871699999719999988--988999999997488999


Q ss_pred             HHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             222102578634786100588787
Q gi|254780420|r  269 IICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       269 ~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      .+++.+..+.++.|.-=|.-+++.
T Consensus       106 ~l~~~~~~G~v~~G~SAGa~~~~~  129 (210)
T cd03129         106 AILKRVARGVVIGGTSAGAAVMGE  129 (210)
T ss_pred             HHHHHHHCCCEEEEECHHHHHCCC
T ss_conf             999999849909973557886287


No 364
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ).  Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=28.39  E-value=41  Score=14.47  Aligned_cols=27  Identities=19%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             HHHHHHHHCCCCEE-EECCCCHHHHHHC
Q ss_conf             23222220245413-3046574464413
Q gi|254780420|r  219 LLRVLSSLGCRITI-VGAETSYKDIMSL  245 (396)
Q Consensus       219 Ilr~L~~~g~~v~V-vp~~~~~~~i~~~  245 (396)
                      |-|.|...|.+|-+ .|..++.++|.++
T Consensus       177 ikRLL~~lGi~VN~V~P~gas~~dl~~L  204 (412)
T cd01982         177 VKRLVTGIGAEVNHVYPFESHLAEIPKL  204 (412)
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHCC
T ss_conf             9999997698478995499998998416


No 365
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366   This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=28.24  E-value=18  Score=16.92  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=9.5

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             88410112110122210257863
Q gi|254780420|r  257 GDPAVTSVYSSPIICKLVDSGMP  279 (396)
Q Consensus       257 GdP~~~~~~~~~~~~~~~~~~iP  279 (396)
                      |||...... -|....+.+.+||
T Consensus        87 GDP~vFGRg-GEE~~~L~~~GI~  108 (242)
T TIGR01469        87 GDPFVFGRG-GEEAEALAEAGIP  108 (242)
T ss_pred             CCCCEECCH-HHHHHHHHHCCCC
T ss_conf             998437856-8999999966897


No 366
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=28.19  E-value=43  Score=14.29  Aligned_cols=85  Identities=24%  Similarity=0.320  Sum_probs=55.9

Q ss_pred             EEEEEECCCCCH--HHHHH----HHHCCC---CEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             499996796410--23222----220245---413304657446441357889985888884101121101222102578
Q gi|254780420|r  207 HVVCIDYGIRSN--LLRVL----SSLGCR---ITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSG  277 (396)
Q Consensus       207 kIvvIDfGiK~n--Ilr~L----~~~g~~---v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~  277 (396)
                      -|+++|-|++.=  .++.=    .-.|.+   -.|.|-.+-..++.+ +-.|||||+|=-|  +.+. +.-+++++  ..
T Consensus        24 ev~i~D~G~~~PRVlIHed~di~~~~G~dL~~~~vIPD~~~l~~~~~-kvkgI~~tHGH~D--HIGa-v~yL~~~~--~~   97 (593)
T TIGR00649        24 EVVIIDAGIRFPRVLIHEDTDIAEMLGVDLIEKGVIPDFTYLKENED-KVKGIVITHGHED--HIGA-VPYLLHQY--GF   97 (593)
T ss_pred             EEEEEECCCCCCCEEEECCCCHHHHCCHHHHHCCCCCCCHHHHHHCC-CEEEEEECCCCCC--CCCH-HHHHHHHC--CC
T ss_conf             59998232237964641552035440411432031689616752125-0678897087100--0122-88898656--88


Q ss_pred             CCEEEEECHHHHHHHHCCCC
Q ss_conf             63478610058878752854
Q gi|254780420|r  278 MPMFGICLGHQLLGLALGAQ  297 (396)
Q Consensus       278 iPilGIClGhQ~l~~a~G~~  297 (396)
                      -||.|==|+..||-.-+-++
T Consensus        98 ~PiYGt~lt~~L~~~ki~~E  117 (593)
T TIGR00649        98 PPIYGTPLTIALIKSKIKAE  117 (593)
T ss_pred             CCEECCHHHHHHHHHHHHHH
T ss_conf             82404378999999988654


No 367
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=28.12  E-value=43  Score=14.28  Aligned_cols=20  Identities=25%  Similarity=0.592  Sum_probs=16.9

Q ss_pred             CCCHHHHHHCCCCEEEECCC
Q ss_conf             65744644135788998588
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNG  255 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnG  255 (396)
                      ..+.|.|++.+||-||+++.
T Consensus       184 ~vs~E~i~~~nPD~I~~~~~  203 (236)
T pfam01497       184 PISFENILAADPDVIIVSGR  203 (236)
T ss_pred             CCCHHHHHHHCCCEEEEECC
T ss_conf             78989999859999999789


No 368
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=27.94  E-value=44  Score=14.26  Aligned_cols=28  Identities=11%  Similarity=0.020  Sum_probs=13.0

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             66640465443455241798999974278
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGI  120 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~I  120 (396)
                      |+||.+...... -+-...+.+-++++|-
T Consensus         3 Gvivp~i~npff-~~l~~gi~~~~~~~GY   30 (270)
T cd01545           3 GLLYDNPSPGYV-SEIQLGALDACRDTGY   30 (270)
T ss_pred             EEEECCCCCHHH-HHHHHHHHHHHHHCCC
T ss_conf             999799973899-9999999999998499


No 369
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=27.91  E-value=34  Score=15.05  Aligned_cols=48  Identities=17%  Similarity=0.109  Sum_probs=25.9

Q ss_pred             CCCCCC----CCH-HHHHHHCCCCE--ECCCCHHH-HHHHHHHCCCCCEEEECCCC
Q ss_conf             455241----798-99997427832--11257689-99999853984236632765
Q gi|254780420|r  103 SNYRAN----MHF-DAWLKSCGIIG--LSGIDTRA-LTVWIRDYGVSNSVIAHHPD  150 (396)
Q Consensus       103 Sn~rs~----~sL-~~wL~~~~Ipg--I~GIDTRa-LTk~IRe~G~~~a~I~~~~~  150 (396)
                      .||.++    ..+ .+|=++.||-.  +..=|.=+ |.|..+|.....|=+..+-|
T Consensus        27 dsf~~d~g~~~~l~~~Fek~tGikV~~v~~~dg~~ll~Rl~~Eg~np~ADVv~gvD   82 (326)
T PRK11205         27 DSFAADWGPGPAVKKAFEAECGCELKFVALEDGVSLLNRLRLEGKNSKADVVLGLD   82 (326)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             54444668647999999898796899996796799999999738999765899817


No 370
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=27.91  E-value=44  Score=14.26  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             CEEEEEEC--CCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             14999967--96410232222202454133046574-4644135788998588888410112110122210257863478
Q gi|254780420|r  206 YHVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       206 ~kIvvIDf--GiK~nIlr~L~~~g~~v~Vvp~~~~~-~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      +||.++|=  -+-..+...|...|++|..+..-..+ +.+....||-|++.-.-  |..-+......+++  ...+||+=
T Consensus         3 ~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~l--p~~~G~el~~~iR~--~~~~piI~   78 (224)
T PRK10766          3 YHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINL--PGEDGLMLTRELRS--RSTVGIIL   78 (224)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCHHHHHHH--CCCCCEEE
T ss_conf             719999199999999999999879999998999999999960899999988999--98876613767630--47855686


Q ss_pred             EEC-H---HHHHHHHCCCCCC
Q ss_conf             610-0---5887875285446
Q gi|254780420|r  283 ICL-G---HQLLGLALGAQTV  299 (396)
Q Consensus       283 ICl-G---hQ~l~~a~G~~~~  299 (396)
                      ++= .   ..+.|+..||.-|
T Consensus        79 lta~~~~~~~i~al~~GaddY   99 (224)
T PRK10766         79 VTGRTDSIDRIVGLEMGADDY   99 (224)
T ss_pred             ECCCCCHHHHHHHHHCCCHHH
T ss_conf             335589899999998494145


No 371
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=27.80  E-value=44  Score=14.24  Aligned_cols=112  Identities=16%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             CCHHHHHHHCCCCEECCC---CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEC
Q ss_conf             798999974278321125---76899999985398423663276545897898887741588743210110133332111
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGI---DTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDW  185 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GI---DTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~  185 (396)
                      ...-+.|++.||+-+.=-   .=-.+-..|+.-|...+.-   +.++.-.+++++++...        .+++.       
T Consensus       131 ~~~v~~L~~~GI~V~v~~~a~SiddV~~~I~~iG~~tg~~---e~A~~lv~~Mk~~i~~v--------~~kv~-------  192 (364)
T PRK09534        131 NDTVTRLRSAGITVFQFRAATSIDGVVEKTATIGRLTGNC---AAAAETNAEMRDRVDAV--------ADAVA-------  192 (364)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHH--------HHHHH-------
T ss_conf             6789999976996999189889999999999999983985---68999999999999999--------99861-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECC-----CCCHHHHHHHHH-C-CCC----EEEEC-CCCHHHHHHCCCCEEEEC
Q ss_conf             68653445434434677777149999679-----641023222220-2-454----13304-657446441357889985
Q gi|254780420|r  186 SEKIWKWGEETSFLKSSDAKYHVVCIDYG-----IRSNLLRVLSSL-G-CRI----TIVGA-ETSYKDIMSLQPDGVLLS  253 (396)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~kIvvIDfG-----iK~nIlr~L~~~-g-~~v----~Vvp~-~~~~~~i~~~~pdgi~lS  253 (396)
                                     ....+++| ++.+|     -|...+..|... | -++    ..-.| ..|.|.|++.+||-||.+
T Consensus       193 ---------------~~~~kp~V-~y~~~~~~TaG~~TFi~elI~lAGG~NIAad~~~~gwpqvS~E~iI~~nPDVII~~  256 (364)
T PRK09534        193 ---------------DVEDRPRV-YYHLGDGYTAGPNTFIGALIEAAGGHNVAADVNTTSYPQLSEEVIVSQDPDVVVTG  256 (364)
T ss_pred             ---------------CCCCCCEE-EEECCCCCCCCCCCCHHHHHHHCCCEEEHHCCCCCCCCCCCHHHHHHHCCCEEEEC
T ss_conf             ---------------56889879-99837983778984589999980876531004887887378999986599889967


Q ss_pred             C
Q ss_conf             8
Q gi|254780420|r  254 N  254 (396)
Q Consensus       254 n  254 (396)
                      .
T Consensus       257 ~  257 (364)
T PRK09534        257 V  257 (364)
T ss_pred             C
T ss_conf             8


No 372
>cd01146 FhuD Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=27.74  E-value=44  Score=14.23  Aligned_cols=21  Identities=10%  Similarity=0.078  Sum_probs=17.1

Q ss_pred             CCCHHHHHHCCCCEEEECCCC
Q ss_conf             657446441357889985888
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      ..+.|.+.+.+||-||++...
T Consensus       189 ~is~E~l~~~nPDvI~~~~~~  209 (256)
T cd01146         189 TISLERLAKADADVLFVFTYE  209 (256)
T ss_pred             CCCHHHHHHHCCCEEEEECCC
T ss_conf             059889987589989997588


No 373
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=27.51  E-value=44  Score=14.21  Aligned_cols=54  Identities=19%  Similarity=0.138  Sum_probs=27.4

Q ss_pred             CCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC
Q ss_conf             798999974278321125768999999853984236632765458978988877415
Q gi|254780420|r  109 MHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNW  165 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~  165 (396)
                      ..+-.+|.+.|. | .++-.+.=.++.+..|.....|......+ ..+++...++.-
T Consensus        49 ~~il~~L~~~G~-g-~DvaS~gEl~~al~aG~~p~~Iif~gp~K-t~~ei~~A~~~G  102 (394)
T cd06831          49 PAVLEILAALGT-G-FACSSKNEMALVQELGVSPENIIYTNPCK-QASQIKYAAKVG  102 (394)
T ss_pred             HHHHHHHHHCCC-C-EEEECHHHHHHHHHCCCCHHHEEECCCCC-CHHHHHHHHHCC
T ss_conf             999999997499-8-89869999999998699879979779999-999999999859


No 374
>KOG1538 consensus
Probab=27.38  E-value=45  Score=14.19  Aligned_cols=19  Identities=16%  Similarity=0.167  Sum_probs=9.0

Q ss_pred             EEEEECCCCEEEEEEECCC
Q ss_conf             6899728987999975676
Q gi|254780420|r   14 AVLVLADGSVIEGMGCGAT   32 (396)
Q Consensus        14 A~L~LedGt~f~G~~fG~~   32 (396)
                      -.|-+.|||+-.-..-|-+
T Consensus       147 lalG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538         147 LALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             EEEECCCCEEEEECCCCCC
T ss_conf             9997158548862267885


No 375
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377    The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=27.26  E-value=10  Score=18.71  Aligned_cols=15  Identities=33%  Similarity=0.508  Sum_probs=9.5

Q ss_pred             CCCCCCEEEEECHHHHHHHHC
Q ss_conf             257863478610058878752
Q gi|254780420|r  274 VDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       274 ~~~~iPilGIClGhQ~l~~a~  294 (396)
                      .+.+||      -|-+||+|.
T Consensus       201 q~~GVp------~~l~lAQAA  215 (332)
T TIGR02541       201 QQLGVP------PHLILAQAA  215 (332)
T ss_pred             HHHCCC------HHHHHHHHH
T ss_conf             871883------678999987


No 376
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=27.12  E-value=45  Score=14.16  Aligned_cols=17  Identities=18%  Similarity=0.092  Sum_probs=8.8

Q ss_pred             CCCEEEECCCCCCCCCC
Q ss_conf             56173216897368458
Q gi|254780420|r   58 LGQIVNFTFPHIGNVGV   74 (396)
Q Consensus        58 ~gQIlvfT~P~IGNyGv   74 (396)
                      .-+++.|-.+.-|+...
T Consensus        41 ~~~i~l~p~~VQG~~a~   57 (295)
T pfam02601        41 LVEIEIYPTLVQGDGAA   57 (295)
T ss_pred             CCEEEEECCCCCCCHHH
T ss_conf             96799947357650489


No 377
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632   Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families.    This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=27.09  E-value=36  Score=14.85  Aligned_cols=92  Identities=11%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             EEEEECCCCC--------HHHHHHHHHCCCCEEEECC-CCHHHHHHCCC-----CEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9999679641--------0232222202454133046-57446441357-----88998588888410112110122210
Q gi|254780420|r  208 VVCIDYGIRS--------NLLRVLSSLGCRITIVGAE-TSYKDIMSLQP-----DGVLLSNGPGDPAVTSVYSSPIICKL  273 (396)
Q Consensus       208 IvvIDfGiK~--------nIlr~L~~~g~~v~Vvp~~-~~~~~i~~~~p-----dgi~lSnGPGdP~~~~~~~~~~~~~~  273 (396)
                      |+++..|-.+        .++.+|..-++.|+-+|-- +=+|++-.+-|     ..|||..|=   +.++. +.. +.+.
T Consensus        42 Iavln~GhshP~vV~AV~~Q~~ef~Ht~f~v~pYe~Yv~lAEkln~iaPgSg~kk~~ffnsGA---EAVEN-AVK-IAR~  116 (427)
T TIGR00700        42 IAVLNVGHSHPKVVEAVKRQVEEFTHTAFQVVPYESYVELAEKLNAIAPGSGEKKAVFFNSGA---EAVEN-AVK-IARK  116 (427)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCCCCCHHEEEECCCH---HHHHH-HHH-HHHH
T ss_conf             232036898735899999999974388534521625899999971578897310002111543---78888-999-9987


Q ss_pred             CCCCCCEEEEEC---HHHHHHHHCCCCCCCCCCC
Q ss_conf             257863478610---0588787528544667767
Q gi|254780420|r  274 VDSGMPMFGICL---GHQLLGLALGAQTVKMYQG  304 (396)
Q Consensus       274 ~~~~iPilGICl---GhQ~l~~a~G~~~~kl~~G  304 (396)
                      ..++--+..---   |---|..|+-+|+.--|+|
T Consensus       117 yTgrpgVvaF~~gfHGRTnmTMalT~Kv~PYK~G  150 (427)
T TIGR00700       117 YTGRPGVVAFDRGFHGRTNMTMALTAKVKPYKIG  150 (427)
T ss_pred             HCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             4589616863687466126788765227873457


No 378
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880    Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=26.95  E-value=28  Score=15.64  Aligned_cols=24  Identities=21%  Similarity=0.384  Sum_probs=13.7

Q ss_pred             CEEEECC--CC---HHHHHHCCCCEEEEC
Q ss_conf             4133046--57---446441357889985
Q gi|254780420|r  230 ITIVGAE--TS---YKDIMSLQPDGVLLS  253 (396)
Q Consensus       230 v~Vvp~~--~~---~~~i~~~~pdgi~lS  253 (396)
                      .+|||..  .+   ++=|..++||-|...
T Consensus       146 ~~~vPiSGG~TekQ~qLI~Df~P~iI~~T  174 (431)
T TIGR02155       146 CTVVPISGGQTEKQVQLIQDFKPDIIMVT  174 (431)
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf             07871379780567776433798889857


No 379
>cd01143 YvrC Periplasmic binding protein YvrC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.94  E-value=45  Score=14.14  Aligned_cols=17  Identities=29%  Similarity=0.589  Sum_probs=13.8

Q ss_pred             CCCHHHHHHCCCCEEEE
Q ss_conf             65744644135788998
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~l  252 (396)
                      ..+.|.|++.+||-||+
T Consensus       179 ~vs~E~i~~~nPDvI~v  195 (195)
T cd01143         179 QVSPEEILKANPDVIIL  195 (195)
T ss_pred             CCCHHHHHHHCCCEEEC
T ss_conf             55999999878399979


No 380
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC; InterPro: IPR010033   This entry represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III, which includes subfamily IIIA (IPR006549 from INTERPRO) and subfamily IIIB (IPR005519 from INTERPRO) contains sequences which do not contain either of the insert domains between the 1st and 2nd conserved catalytic motifs, subfamily I (IPR006388 from INTERPRO, IPR006402 from INTERPRO, IPR006439 from INTERPRO, IPR006383 from INTERPRO, IPR006545 from INTERPRO, IPR006434 from INTERPRO, and IPR006435 from INTERPRO), or between the 2nd and 3rd, subfamily II (IPR006357 from INTERPRO, and IPR006379 from INTERPRO). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (IPR007827 from INTERPRO), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (IPR010036 from INTERPRO), a family of bacteria including the Streptomyces FkbH protein (IPR010037 from INTERPRO), and a small clade including the Pasteurella multocida BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in architecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterised with respect to function, however the MDP-1 protein  is a characterised phosphatase. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases  are present in subfamily IIIC..
Probab=26.90  E-value=40  Score=14.55  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             HHHHHHHH---CCCCEEEECC-C--CHHHHHHCCCC--EEEECCCC
Q ss_conf             23222220---2454133046-5--74464413578--89985888
Q gi|254780420|r  219 LLRVLSSL---GCRITIVGAE-T--SYKDIMSLQPD--GVLLSNGP  256 (396)
Q Consensus       219 Ilr~L~~~---g~~v~Vvp~~-~--~~~~i~~~~pd--gi~lSnGP  256 (396)
                      .|..|.++   ||-+.+..++ .  -+.++++.+.+  +++||.|-
T Consensus        54 ~L~~l~~~PWaG~~l~l~S~n~~~~~~~~~~~~~~~Yf~~i~~gG~   99 (179)
T TIGR01681        54 VLQTLKKNPWAGFLLALASYNDDEHVAYELLKIFKDYFGVIISGGH   99 (179)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCHHHCCEEECCCE
T ss_conf             9999972898867999864388579999987313102256751881


No 381
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=26.82  E-value=46  Score=14.12  Aligned_cols=43  Identities=19%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             HHHHHC-CCCEEEECCCCCCCCCC--CCCCH-HHHHHHCCCCCCEEEEE
Q ss_conf             464413-57889985888884101--12110-12221025786347861
Q gi|254780420|r  240 KDIMSL-QPDGVLLSNGPGDPAVT--SVYSS-PIICKLVDSGMPMFGIC  284 (396)
Q Consensus       240 ~~i~~~-~pdgi~lSnGPGdP~~~--~~~~~-~~~~~~~~~~iPilGIC  284 (396)
                      +.|.+. +-|-|+|  |||.|-..  ..... .+...+.+..-|+.+||
T Consensus       182 eaveAI~~AD~Ivi--GPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~  228 (323)
T COG0391         182 EAVEAIKEADLIVI--GPGSLFTSILPILLLPGIAEALRETVAPIVYVC  228 (323)
T ss_pred             HHHHHHHHCCEEEE--CCCCCHHHHCHHHCCHHHHHHHHHCCCCEEEEC
T ss_conf             99999985898998--688327664303010579999986789779861


No 382
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=26.69  E-value=39  Score=14.64  Aligned_cols=48  Identities=17%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCC-CCCCEEEEECH-----HHHHHHHCC
Q ss_conf             578899858888841011211012221025-78634786100-----588787528
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVD-SGMPMFGICLG-----HQLLGLALG  295 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~-~~iPilGIClG-----hQ~l~~a~G  295 (396)
                      +-.||+|+ |||+-. ........+..-++ .-+.++-+|+|     +|++-+|--
T Consensus       208 ~v~Giilg-Gp~~~K-~~f~~~~~ld~rL~~kVi~~~Dv~Y~gE~Gl~e~ie~s~d  261 (403)
T TIGR03676       208 KLKGILIG-GPGPTK-EEFAEGDYLHHELKKKILGLFDVSYTGESGLRELVEKAED  261 (403)
T ss_pred             CEEEEEEC-CCCHHH-HHHHHCCCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHH
T ss_conf             53799933-784176-7763145535889965033430478872449999999999


No 383
>pfam03262 Corona_6B_7B Coronavirus 6B/7B protein.
Probab=26.68  E-value=24  Score=16.11  Aligned_cols=114  Identities=18%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC-----CC-----CEEEECCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             499996796410232222202454133046574464413-----57-----88998588888410112110122210257
Q gi|254780420|r  207 HVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSL-----QP-----DGVLLSNGPGDPAVTSVYSSPIICKLVDS  276 (396)
Q Consensus       207 kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~-----~p-----dgi~lSnGPGdP~~~~~~~~~~~~~~~~~  276 (396)
                      .|..+-+|.+   +++=.--|+..+.=-+..++.+-...     +|     |-..+|-|-|+-..    ...++-+.-+.
T Consensus        51 qiLsLPlga~---v~C~~veGf~CtwPGf~~~ahDHiDfyfDlsnPFYsFVd~FYis~g~~~~ri----~Lr~vga~pK~  123 (209)
T pfam03262        51 QILSLPLGAE---VECESVEGFNCTWPGFQNAAHDHIDFYFDLSNPFYSFVDTFYISVGEGNQKI----NLRLVGATPKD  123 (209)
T ss_pred             HEEECCCCCE---EEECCCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHHEEEEEECCCCCEE----EEEECCCCCCC
T ss_conf             7575246876---8762546515368674431224403786079725611013899940576368----99980588711


Q ss_pred             CCCEEEE-ECHHHHHHHHCCCCCCCCCCCCCCCCCCCE--EC-CCCEEEEEC---CC-CCEEEEH
Q ss_conf             8634786-100588787528544667767521011234--77-897099961---45-7615703
Q gi|254780420|r  277 GMPMFGI-CLGHQLLGLALGAQTVKMYQGHHGVNHPVK--NI-SNGTVEIVS---MN-HGFAIDA  333 (396)
Q Consensus       277 ~iPilGI-ClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~--~~-~t~kv~iTs---qN-Hg~~v~~  333 (396)
                      |  .|-| |----.+.+-+|-.++-    -|-.-|||.  ++ -+.|+|+..   +| |||+..+
T Consensus       124 K--rLnvgc~~sf~vdLpfgtQiyh----Drd~~~~V~grhleCthrvyfVkyCp~~~hgyCf~d  182 (209)
T pfam03262       124 K--RLNIGCHTSFSVDLPFGTQIYH----DRDMQLLVEGRHLECTHRVYFVKYCPYHAHGYCFKD  182 (209)
T ss_pred             C--EEEECCCCCCCCCCCCCEEEEE----CCCCEEECCCEECCCCCEEEEEEECCCCCCCEEECC
T ss_conf             1--6876245663015765205670----453043316665013336899986899986333536


No 384
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=26.57  E-value=46  Score=14.10  Aligned_cols=161  Identities=17%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCC----HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             66404654434552417989999742783211257----68999999853984236632765458978988877415887
Q gi|254780420|r   93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID----TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGL  168 (396)
Q Consensus        93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GID----TRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~  168 (396)
                      +|+.+-...|.  ++.....++..+.+|.+|-|--    |.++...+.+.|...-..+....       .......|   
T Consensus        42 lv~~Dd~~~p~--~a~~~a~~li~~~~V~~ivG~~~S~~~~a~~~~~~~~~vp~is~~~~~~-------~~~~~~~y---  109 (312)
T cd06333          42 LIVLDDGSDPT--KAVTNARKLIEEDKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAA-------IVEPKRKW---  109 (312)
T ss_pred             EEEECCCCCHH--HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCC-------CCCCCCCC---
T ss_conf             99836999989--9999999986517933986687737788889999974986997478761-------22489870---


Q ss_pred             CCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEE----CC--CCCHHHHHHHHHCCCCEE---EE-CCCC
Q ss_conf             43210110133332111686534454344346777771499996----79--641023222220245413---30-4657
Q gi|254780420|r  169 KGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCID----YG--IRSNLLRVLSSLGCRITI---VG-AETS  238 (396)
Q Consensus       169 ~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvID----fG--iK~nIlr~L~~~g~~v~V---vp-~~~~  238 (396)
                           +-.+...... ......      .+... .+-+||++|.    ||  ....+.+.+.+.|.+|+-   ++ .+++
T Consensus       110 -----~fr~~~~~~~-~~~~~~------~~~~~-~g~kkvail~~~~~yg~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D  176 (312)
T cd06333         110 -----VFKTPQNDRL-MAEAIL------ADMKK-RGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTS  176 (312)
T ss_pred             -----EEECCCCHHH-HHHHHH------HHHHH-CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             -----7961598799-999999------99997-3998899996176055999999999999779939999972798767


Q ss_pred             H----HHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             4----46441357889985888884101121101222102578634786
Q gi|254780420|r  239 Y----KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       239 ~----~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      +    ..+.+.+||.||+..-+.+   .. ......++ +.-+.|++|-
T Consensus       177 fs~~l~ki~~~~pD~v~~~~~~~~---~~-~~~~q~~~-~G~~~~~~~~  220 (312)
T cd06333         177 VTAQLLKIRAARPDAVLIWGSGTP---AA-LPAKNLRE-RGYKGPIYQT  220 (312)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCH---HH-HHHHHHHH-CCCCCCEEEC
T ss_conf             799999998569899999457516---99-99999997-6998708812


No 385
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.52  E-value=46  Score=14.09  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=12.6

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             666404654434552417989999742783
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCGII  121 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~Ip  121 (396)
                      |+||.++... .--.--..+.+-++++|.-
T Consensus         3 Gvivp~i~np-f~~~i~~gie~~~~~~gy~   31 (265)
T cd06290           3 GVLTQDFASP-FYGRILKGMERGLNGSGYS   31 (265)
T ss_pred             EEEECCCCCH-HHHHHHHHHHHHHHHCCCE
T ss_conf             9997898769-9999999999999986998


No 386
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=26.38  E-value=20  Score=16.61  Aligned_cols=23  Identities=43%  Similarity=0.439  Sum_probs=16.1

Q ss_pred             EEEECHHHHHHHHCCCCCCCCCCC
Q ss_conf             786100588787528544667767
Q gi|254780420|r  281 FGICLGHQLLGLALGAQTVKMYQG  304 (396)
Q Consensus       281 lGIClGhQ~l~~a~G~~~~kl~~G  304 (396)
                      .||||| |+|..|+|-+--=-.||
T Consensus        72 ~gIaLG-qAl~~AlGdk~GI~Rfg   94 (195)
T COG0131          72 TGIALG-QALKEALGDKRGIRRFG   94 (195)
T ss_pred             HHHHHH-HHHHHHHCCCCCCEECC
T ss_conf             998999-99999856421531115


No 387
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.35  E-value=47  Score=14.07  Aligned_cols=30  Identities=7%  Similarity=0.012  Sum_probs=14.9

Q ss_pred             CCHHHHHHHCCCCEEC-C----CCHHHHHHHHHHC
Q ss_conf             7989999742783211-2----5768999999853
Q gi|254780420|r  109 MHFDAWLKSCGIIGLS-G----IDTRALTVWIRDY  138 (396)
Q Consensus       109 ~sL~~wL~~~~IpgI~-G----IDTRaLTk~IRe~  138 (396)
                      ..+..++.+..+..|- |    =+|+.+++.++.+
T Consensus        69 ~~~~~~~~~~~aiviGpGlg~~~~~~~~~~~~~~~  103 (254)
T cd01171          69 EELLELLERADAVVIGPGLGRDEEAAEILEKALAK  103 (254)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             67776533587899827889999999999999844


No 388
>pfam10563 CdCA1 Cadmium carbonic anhydrase repeat. This domain is the cadmium carbonic anhydrase repeat unit of the beta-carbonic anhydrase of a marine diatom, that uses both zinc and cadmium for catalysis of the reversible hydration of carbon dioxide for use in inorganic carbon acquisition for photosynthesis (thus being a cambialistic enzyme). Compared with alpha- and gamma-carbonic anhydrases that use three histidines to coordinate the zinc-atom, this beta-carbonic anhydrase has two cysteines and one histidine, and rapidly binds cadmium.
Probab=26.33  E-value=35  Score=14.91  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf             02322222024541330465744644135788998
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l  252 (396)
                      -|+-.|..||..-++++...-+.++....|+|++-
T Consensus         5 ~i~~aLq~RGW~A~Iv~~s~~~~~lvdV~p~G~lK   39 (209)
T pfam10563         5 QIKAALEGRGWTATIVPRSEMASDLVDVGPDGILK   39 (209)
T ss_pred             HHHHHHHHCCCCEEEEEHHHHHHHHEEECCCCEEE
T ss_conf             99999980898368730666333443208764388


No 389
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=26.14  E-value=25  Score=16.01  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=17.3

Q ss_pred             EECCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             211257689999998539842366327
Q gi|254780420|r  122 GLSGIDTRALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus       122 gI~GIDTRaLTk~IRe~G~~~a~I~~~  148 (396)
                      +|.| =+|.|-+.+++......+++.+
T Consensus        33 ai~g-f~~~l~~l~~~~~p~~i~v~fD   58 (240)
T cd00008          33 AVYG-FLNMLLKLIKEYKPTYVAVVFD   58 (240)
T ss_pred             HHHH-HHHHHHHHHHHCCCCEEEEEEC
T ss_conf             8999-9999999998659988999972


No 390
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=25.96  E-value=26  Score=15.86  Aligned_cols=11  Identities=27%  Similarity=0.440  Sum_probs=4.7

Q ss_pred             EEEEECCCCCH
Q ss_conf             99996796410
Q gi|254780420|r  208 VVCIDYGIRSN  218 (396)
Q Consensus       208 IvvIDfGiK~n  218 (396)
                      =+.++=|+--|
T Consensus       166 ~~~i~~GV~in  176 (409)
T COG2235         166 FASIGNGVSIN  176 (409)
T ss_pred             CEEEECCEEEC
T ss_conf             33760877852


No 391
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=25.92  E-value=47  Score=14.01  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             EEEEEEC-CCCCHHHHHH----HHHCCCCEEEECCC--------CHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             4999967-9641023222----22024541330465--------7446441--357889985888884101121101222
Q gi|254780420|r  207 HVVCIDY-GIRSNLLRVL----SSLGCRITIVGAET--------SYKDIMS--LQPDGVLLSNGPGDPAVTSVYSSPIIC  271 (396)
Q Consensus       207 kIvvIDf-GiK~nIlr~L----~~~g~~v~Vvp~~~--------~~~~i~~--~~pdgi~lSnGPGdP~~~~~~~~~~~~  271 (396)
                      .|+++|| |+.-+.+..|    ++.|+++.|+.++.        ..+++..  ..|-++++|++  ||....+.... +.
T Consensus        19 ~v~v~~~~gl~~~~~~~lR~~l~~~~~~~~V~KNtL~k~Al~~~~~~~l~~~l~G~~a~~f~~~--d~~~~aK~~~~-f~   95 (155)
T cd00379          19 SVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTGFEELKPLLKGPTALAFTNE--DPVEVAKVLKD-FA   95 (155)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEECC--CCHHHHHHHHH-HH
T ss_conf             8999977999789999999998857917999855889999860586544322547758998278--82589999999-99


Q ss_pred             HHCCCCCCEEEEECHHHHHHH
Q ss_conf             102578634786100588787
Q gi|254780420|r  272 KLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       272 ~~~~~~iPilGIClGhQ~l~~  292 (396)
                      +-. .+..+.|=++.-+++..
T Consensus        96 k~~-~~~~~k~G~~~~~~~~~  115 (155)
T cd00379          96 KEN-KKLFAKGGVVAGKVLDP  115 (155)
T ss_pred             HHC-CCCEEEEEEECCEEECH
T ss_conf             756-78215788776845279


No 392
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.77  E-value=48  Score=14.00  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=16.5

Q ss_pred             HHHHCCCCEECCCC-----HHHHHHHHHHCCC
Q ss_conf             99742783211257-----6899999985398
Q gi|254780420|r  114 WLKSCGIIGLSGID-----TRALTVWIRDYGV  140 (396)
Q Consensus       114 wL~~~~IpgI~GID-----TRaLTk~IRe~G~  140 (396)
                      ++.+..+.||+|=.     |..|..++++.|-
T Consensus       105 ~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~  136 (448)
T PRK03803        105 RAAKAPIVAITGSNAKSTVTTLVGEMAKAAGK  136 (448)
T ss_pred             HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             21789889985899838899999999986598


No 393
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.50  E-value=48  Score=13.96  Aligned_cols=12  Identities=25%  Similarity=0.332  Sum_probs=5.0

Q ss_pred             CCHHHHHHHCCC
Q ss_conf             798999974278
Q gi|254780420|r  109 MHFDAWLKSCGI  120 (396)
Q Consensus       109 ~sL~~wL~~~~I  120 (396)
                      ..+.+.++++|.
T Consensus        19 ~~ie~~~~~~Gy   30 (268)
T cd06273          19 QAFQETLAAHGY   30 (268)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999998599


No 394
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=25.50  E-value=48  Score=13.96  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE------CCCCHHHHHHCCCCEEE--ECCCCCCCC
Q ss_conf             77714999967964102322222024541330------46574464413578899--858888841
Q gi|254780420|r  203 DAKYHVVCIDYGIRSNLLRVLSSLGCRITIVG------AETSYKDIMSLQPDGVL--LSNGPGDPA  260 (396)
Q Consensus       203 ~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp------~~~~~~~i~~~~pdgi~--lSnGPGdP~  260 (396)
                      ..++||.+|||--|.+=.+.|...-..-+|+.      .+.+.++|....+.|+.  -|.|| .|.
T Consensus        27 ~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi~cveaggp-~pg   91 (274)
T PRK13235         27 EMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNTRCTESGGP-EPG   91 (274)
T ss_pred             HCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCEEEEECCCC-CCC
T ss_conf             78997999898984536678738998997899998628776778944317898189868998-756


No 395
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.49  E-value=48  Score=13.96  Aligned_cols=31  Identities=19%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf             578899858888841011211012221025786347861
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC  284 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC  284 (396)
                      -||.+|+.    ||..-    ...+++...-+|||.+||
T Consensus       156 ~Pd~l~Vi----Dp~~e----~iAv~EA~klgIPVvAlv  186 (252)
T COG0052         156 LPDVLFVI----DPRKE----KIAVKEANKLGIPVVALV  186 (252)
T ss_pred             CCCEEEEE----CCCHH----HHHHHHHHHCCCCEEEEE
T ss_conf             99989996----88176----899999997599989984


No 396
>PRK08818 prephenate dehydrogenase; Provisional
Probab=25.45  E-value=48  Score=13.96  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=17.6

Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             48888985378888760141614256173216
Q gi|254780420|r   34 SIQAEICFNTSLTGYQEILTDPSYLGQIVNFT   65 (396)
Q Consensus        34 ~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT   65 (396)
                      +..-|+|.+--|+|=+++   ||-.||+++.|
T Consensus       100 ~s~~eVv~~HPMfGpP~s---PsL~gqVVIlt  128 (373)
T PRK08818        100 ASQAEVVGLHPMTAPPKS---PTLKGRVMVVC  128 (373)
T ss_pred             HCCCCEECCCCCCCCCCC---CCCCCEEEEEE
T ss_conf             444422237887789998---64044189970


No 397
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=25.15  E-value=49  Score=13.92  Aligned_cols=47  Identities=19%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCC
Q ss_conf             36664046544345524179899997427832112576899999985398
Q gi|254780420|r   91 VGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGV  140 (396)
Q Consensus        91 ~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~  140 (396)
                      .|+.+.++...-++   ...+..+|.+..+.-+.|=.|+-|-+.+||.|.
T Consensus        61 lg~~v~~L~l~~~~---~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gl  107 (224)
T COG3340          61 LGLEVSELHLSKPP---LAAIENKLMKADIIYVGGGNTFNLLQELKETGL  107 (224)
T ss_pred             CCCEEEEEECCCCC---HHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCC
T ss_conf             69715542546799---999997651155899888518999999998475


No 398
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB.  Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.11  E-value=49  Score=13.91  Aligned_cols=89  Identities=17%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             CCCEEEEEECCCC------CHHHHHHHHHCCC-CEEEECCC----CHHHHHH--CCCCEEEECCCCCCCCCCCCC-----
Q ss_conf             7714999967964------1023222220245-41330465----7446441--357889985888884101121-----
Q gi|254780420|r  204 AKYHVVCIDYGIR------SNLLRVLSSLGCR-ITIVGAET----SYKDIMS--LQPDGVLLSNGPGDPAVTSVY-----  265 (396)
Q Consensus       204 ~~~kIvvIDfGiK------~nIlr~L~~~g~~-v~Vvp~~~----~~~~i~~--~~pdgi~lSnGPGdP~~~~~~-----  265 (396)
                      .+.+|+++.-...      ..-.+.+.++|+. +.+++-+.    +-.++.+  .+-|+||++  .|||...-..     
T Consensus        28 ~~~ri~viptAs~~~~~~~~~~~~~f~~lG~~~v~~l~~~~r~~a~~~~~~~~l~~a~~i~~~--GG~q~~~~~~~~~t~  105 (217)
T cd03145          28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFT--GGDQLRITSALGGTP  105 (217)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHCCCEEEEC--CCCHHHHHHHHHCCC
T ss_conf             987599985887885999999999999839995059822683544898999999649989993--899999999996396


Q ss_pred             CHHHHHHHCCCCCCEEEEECHHHHHHHHC
Q ss_conf             10122210257863478610058878752
Q gi|254780420|r  266 SSPIICKLVDSGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       266 ~~~~~~~~~~~~iPilGIClGhQ~l~~a~  294 (396)
                      ....+++.++.+.||.|.-=|.-+++...
T Consensus       106 ~~~~l~~~~~~G~vi~G~SAGA~~~~~~~  134 (217)
T cd03145         106 LLDALRKVYRGGVVIGGTSAGAAVMSDTM  134 (217)
T ss_pred             HHHHHHHHHHCCCEEEECCHHHHHHHHHC
T ss_conf             99999999986994884117888745421


No 399
>PRK09482 xni exonuclease IX; Provisional
Probab=25.06  E-value=49  Score=13.91  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHCCCCCEEEECC
Q ss_conf             689999998539842366327
Q gi|254780420|r  128 TRALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus       128 TRaLTk~IRe~G~~~a~I~~~  148 (396)
                      +++|.+.|++......+++.+
T Consensus        35 ~~~l~kli~~~~P~~i~v~fD   55 (256)
T PRK09482         35 QHALDKLIRHSQPTHAVAVFD   55 (256)
T ss_pred             HHHHHHHHHHCCCCEEEEEEE
T ss_conf             999999999719987999984


No 400
>KOG3323 consensus
Probab=24.93  E-value=49  Score=13.89  Aligned_cols=24  Identities=17%  Similarity=0.520  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34878877670016899999999997
Q gi|254780420|r  366 QYHPESSPGPQDSYYLFSTFIDFMHK  391 (396)
Q Consensus       366 QfHPEa~PGP~D~~~~F~~F~~~i~~  391 (396)
                      |||--.  +|+.+..|+..|++++++
T Consensus        92 dfH~am--~~~ea~elY~qfl~~l~k  115 (149)
T KOG3323          92 DFHLAM--KGEEAKELYNQFLELLRK  115 (149)
T ss_pred             CHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf             554406--954669999999999987


No 401
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=24.79  E-value=50  Score=13.87  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=27.2

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCC-CEEEEC
Q ss_conf             79641023222220245413304657446441357-889985
Q gi|254780420|r  213 YGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQP-DGVLLS  253 (396)
Q Consensus       213 fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~p-dgi~lS  253 (396)
                      +|+-.|.+..|.+.+.+-..+..--++..++.++| |-+||.
T Consensus         7 tGIs~~vie~l~~~~~rTieiRsa~N~~tv~rl~~GDlVFlT   48 (122)
T COG1935           7 TGISRRVIESLLRNPIRTIEIRSARNLLTVLRLHEGDLVFLT   48 (122)
T ss_pred             ECHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCEEEEE
T ss_conf             151199999998688539999744236776447888889996


No 402
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 .    Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=24.49  E-value=32  Score=15.25  Aligned_cols=85  Identities=19%  Similarity=0.338  Sum_probs=54.8

Q ss_pred             CEEEEEE------CCCCCHHHHHHHHHCCCCEEEECCCCHH---HHHHCC---C---CEEEECCCCCCCCCCCCCCHHHH
Q ss_conf             1499996------7964102322222024541330465744---644135---7---88998588888410112110122
Q gi|254780420|r  206 YHVVCID------YGIRSNLLRVLSSLGCRITIVGAETSYK---DIMSLQ---P---DGVLLSNGPGDPAVTSVYSSPII  270 (396)
Q Consensus       206 ~kIvvID------fGiK~nIlr~L~~~g~~v~Vvp~~~~~~---~i~~~~---p---dgi~lSnGPGdP~~~~~~~~~~~  270 (396)
                      +.||=|=      ||.=.-+++.|.+.|...+|+|-=+++.   -.++..   |   .-|+|.=+=|-=..+.  ..|.+
T Consensus        72 K~VvRLHsGDPsIYGA~~EQ~~~L~~~gI~~e~vPGvSsf~AAAA~l~~ELT~P~vsQtvilTR~eG~RtPmP--e~E~l  149 (252)
T TIGR01465        72 KLVVRLHSGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRRTPMP--EGEKL  149 (252)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC--CHHHH
T ss_conf             8499985087557766999999998678977986887389899997300147884034244675434354577--66789


Q ss_pred             HHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             21025786347861005887875
Q gi|254780420|r  271 CKLVDSGMPMFGICLGHQLLGLA  293 (396)
Q Consensus       271 ~~~~~~~iPilGIClGhQ~l~~a  293 (396)
                      ..+.+. --.|+|=||-+++-..
T Consensus       150 ~~lA~h-gaTm~IfLs~~~~~~v  171 (252)
T TIGR01465       150 ADLAKH-GATMAIFLSAHIIDKV  171 (252)
T ss_pred             HHHHHH-CCHHHHHHHHHHHHHH
T ss_conf             988741-2313567789999999


No 403
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.47  E-value=50  Score=13.83  Aligned_cols=27  Identities=15%  Similarity=0.147  Sum_probs=12.1

Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             6664046544345524179899997427
Q gi|254780420|r   92 GLVIKAEITEPSNYRANMHFDAWLKSCG  119 (396)
Q Consensus        92 g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~  119 (396)
                      |+||.++.. |.--.--..+.+.++++|
T Consensus         3 Gvivpdi~n-pf~~~i~~gi~~~~~~~g   29 (263)
T cd06280           3 GLIVADIRN-PFFTAVSRAVEDAAYRAG   29 (263)
T ss_pred             EEEECCCCC-HHHHHHHHHHHHHHHHCC
T ss_conf             999888877-899999999999999869


No 404
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.46  E-value=18  Score=17.00  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEC
Q ss_conf             796410232222202454133046574464413578899858888841011211012221---0257863478610
Q gi|254780420|r  213 YGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICK---LVDSGMPMFGICL  285 (396)
Q Consensus       213 fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~---~~~~~iPilGICl  285 (396)
                      |=+|.-|.|--.+.|+.|++|.+..-.-- ..-.-.-++.+.|+   ...+..+.+...+   .+...||+-..||
T Consensus        11 CPVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~V~~g~---DaaD~~Iv~~a~~gDlVVT~Di~LA~~ll   82 (150)
T COG1671          11 CPVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVVVDAGF---DAADDWIVNLAEKGDLVVTADIPLASLLL   82 (150)
T ss_pred             CCHHHHHHHHHHHHCCEEEEEECCCCCCC-CCCCEEEEEECCCC---CHHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf             85189999999996975999917875689-99853689955773---32889999837789989977647899999


No 405
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=24.44  E-value=50  Score=13.84  Aligned_cols=21  Identities=48%  Similarity=0.912  Sum_probs=17.3

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             8898537888876014161425617321689736845
Q gi|254780420|r   37 AEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG   73 (396)
Q Consensus        37 GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyG   73 (396)
                      +++||.||.|        ||        -.|||||.|
T Consensus        29 ~~vv~~tG~~--------pS--------G~~HiG~~~   49 (513)
T PRK00750         29 GEVLFETGYG--------PS--------GLPHIGTFG   49 (513)
T ss_pred             CEEEEECCCC--------CC--------CCCCCCCCC
T ss_conf             7399936868--------99--------886230452


No 406
>pfam04187 DUF399 Protein of unknown function, DUF399. No function is known for any member of this family.
Probab=24.42  E-value=50  Score=13.83  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=15.1

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             236664046544345524179899997
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLK  116 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~  116 (396)
                      +.-+++-|..+.+.|++.+..+-.-|.
T Consensus        13 advVllGE~Hdn~~~H~~Q~~il~~L~   39 (213)
T pfam04187        13 ADVVLLGEQHDNPAHHRLQLWLLRALH   39 (213)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             998997888799889999999999999


No 407
>KOG4328 consensus
Probab=24.37  E-value=46  Score=14.09  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=24.0

Q ss_pred             CCCCCCCEEEEEECC--CCCH-HHHHHHHHCCCCEEEECC-CCHHHHHHCCCCEEEEC
Q ss_conf             677777149999679--6410-232222202454133046-57446441357889985
Q gi|254780420|r  200 KSSDAKYHVVCIDYG--IRSN-LLRVLSSLGCRITIVGAE-TSYKDIMSLQPDGVLLS  253 (396)
Q Consensus       200 ~~~~~~~kIvvIDfG--iK~n-Ilr~L~~~g~~v~Vvp~~-~~~~~i~~~~pdgi~lS  253 (396)
                      ..++++-.|-+-|||  .|.+ =+......+.-|.-+... ++...|++..+||-+=+
T Consensus       204 a~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328         204 AVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             EECCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEECCCCHHHEEEECCCCEEEE
T ss_conf             9715777277876677777667548845677622343755798435565124761566


No 408
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=24.23  E-value=51  Score=13.80  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             HHHHCCCCEEEECC----CCHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             22202454133046----57446441--3578899858888841011211012221025786
Q gi|254780420|r  223 LSSLGCRITIVGAE----TSYKDIMS--LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGM  278 (396)
Q Consensus       223 L~~~g~~v~Vvp~~----~~~~~i~~--~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~i  278 (396)
                      ....|+.+.-+|.+    .+.+.+.+  .+.+.|||.| |.+|.-.- ...+.+.++++...
T Consensus       111 ~~~~g~~~~~vpl~~~f~~d~~~~~~~~~~~~~v~l~n-PnNPTG~~-~~~~el~~~~~~~~  170 (337)
T PRK03967        111 AKLNGIPVIDVPLKEDFTIDGDRIVEKAKDASAVFICS-PNNPTGNL-QPIEEILKVLDTGK  170 (337)
T ss_pred             HHHCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEC-CCCCCCCC-CCHHHHHHHHHCCC
T ss_conf             99839859996153456789999985177887899938-99987621-67899998650088


No 409
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=24.18  E-value=28  Score=15.65  Aligned_cols=51  Identities=18%  Similarity=0.066  Sum_probs=28.2

Q ss_pred             CCEEEEEECC------CCCHHHHHHHHHCCCCEEEECCCCHHHHHH-------CCCCEEEECCCC
Q ss_conf             7149999679------641023222220245413304657446441-------357889985888
Q gi|254780420|r  205 KYHVVCIDYG------IRSNLLRVLSSLGCRITIVGAETSYKDIMS-------LQPDGVLLSNGP  256 (396)
Q Consensus       205 ~~kIvvIDfG------iK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~-------~~pdgi~lSnGP  256 (396)
                      +.+||++=.|      .=..+++.|.+ ++.+.|+|-=+++...-+       ..-+.+.+.+|+
T Consensus        98 G~~Va~lt~GDp~~YsT~~yl~~~l~~-~~~vevIPGItS~~AaAA~~g~pL~~~~e~l~Iip~~  161 (241)
T PRK05990         98 GRDVAVICEGDPFFYGSYMYLHDRLAP-RYETEVVPGVCSMLGGASVLGAPLVYRNQSLSVLSGV  161 (241)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHCCCCEECCCEEEEEECC
T ss_conf             996999957794366469999999627-9998998976699999997099726168316998067


No 410
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=24.06  E-value=27  Score=15.72  Aligned_cols=57  Identities=14%  Similarity=0.007  Sum_probs=35.1

Q ss_pred             CCEEEEEECC------CCCHHHHHHHHH--CCCCEEEECCCCHHHHHH-------CCCCEEEECCCCCCCCC
Q ss_conf             7149999679------641023222220--245413304657446441-------35788998588888410
Q gi|254780420|r  205 KYHVVCIDYG------IRSNLLRVLSSL--GCRITIVGAETSYKDIMS-------LQPDGVLLSNGPGDPAV  261 (396)
Q Consensus       205 ~~kIvvIDfG------iK~nIlr~L~~~--g~~v~Vvp~~~~~~~i~~-------~~pdgi~lSnGPGdP~~  261 (396)
                      +.+||++-.|      .=.-+++.|.++  ++.+.|+|-=+++...-+       ..-+-+.+.+++.+++.
T Consensus        92 G~~Va~l~~GDp~~Yst~~yl~~~l~~~~~~i~vevIPGIsS~~aaAA~~g~pL~~~~e~l~Vip~~~~~~~  163 (238)
T PRK05948         92 GEDVAFACEGDVSLYSTFTYLAQTLRELHPQVAIQTIPGVCSPLAAAAALGLPLTLGSERLAILPALYRLEE  163 (238)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHH
T ss_conf             993999944683066648999999984199943997388216999999719974627850899967899899


No 411
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.96  E-value=49  Score=13.89  Aligned_cols=55  Identities=24%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEEC--CCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             023222220245413304657446441357889985--8888841011211012221025
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLS--NGPGDPAVTSVYSSPIICKLVD  275 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lS--nGPGdP~~~~~~~~~~~~~~~~  275 (396)
                      .-|-.|.+.|| ++.-||.+..+++.  +||-+++-  +|||.+-..-..+...++++++
T Consensus        73 ~~L~~lan~g~-iE~H~w~sr~~~~~--~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~  129 (228)
T cd04865          73 AALLWLANLGC-IELHPWPSRAGDLD--HPDELVIDLDPQPGTSFEDVVEVALLVREVLD  129 (228)
T ss_pred             HHHHHHHHCCC-EEEECCCCCCCCCC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999986294-67417877778778--99879982899988999999999999999999


No 412
>smart00475 53EXOc 5'-3' exonuclease.
Probab=23.94  E-value=33  Score=15.10  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=11.6

Q ss_pred             EECCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             211257689999998539842366327
Q gi|254780420|r  122 GLSGIDTRALTVWIRDYGVSNSVIAHH  148 (396)
Q Consensus       122 gI~GIDTRaLTk~IRe~G~~~a~I~~~  148 (396)
                      +|.|. +|.|-+.+++...-..+++.+
T Consensus        32 ai~gf-~~~l~~l~~~~~p~~i~v~fD   57 (259)
T smart00475       32 AVYGF-LRMLLKLIKEEKPTYVAVVFD   57 (259)
T ss_pred             HHHHH-HHHHHHHHHHCCCCEEEEEEE
T ss_conf             79999-999999998769977999981


No 413
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=23.77  E-value=52  Score=13.74  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CHHHHHHCCCCEEEECC-CCCCCCCCCCCCHHHHHHHCCCCCC--EEEEECHHHHH-HHHCCCCCCCCCCCCC
Q ss_conf             74464413578899858-8888410112110122210257863--47861005887-8752854466776752
Q gi|254780420|r  238 SYKDIMSLQPDGVLLSN-GPGDPAVTSVYSSPIICKLVDSGMP--MFGICLGHQLL-GLALGAQTVKMYQGHH  306 (396)
Q Consensus       238 ~~~~i~~~~pdgi~lSn-GPGdP~~~~~~~~~~~~~~~~~~iP--ilGIClGhQ~l-~~a~G~~~~kl~~Ghr  306 (396)
                      +++++.+.++||..|++ ++|.+...-....+.+...+....|  ++|+.-=.+++ +.++|..+..-.+..|
T Consensus        73 s~~~l~~~~~~GyaIgGl~~ge~~~~~~~~l~~~~~~Lp~~kPr~l~G~g~P~~i~~~v~~GiD~FD~~~ptr  145 (238)
T pfam01702        73 SAEELAELDFDGYAIGGLSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVFPTR  145 (238)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCEECCCHHH
T ss_conf             9999744899879856877788999999999999855887785640699999999999995888100341379


No 414
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=23.71  E-value=52  Score=13.74  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHCCCCEEEECCC-----CH-HHHHH-CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             102322222024541330465-----74-46441-35788998588888410112110122210257863478
Q gi|254780420|r  217 SNLLRVLSSLGCRITIVGAET-----SY-KDIMS-LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFG  282 (396)
Q Consensus       217 ~nIlr~L~~~g~~v~Vvp~~~-----~~-~~i~~-~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilG  282 (396)
                      ...-+.|.+.|..+..+.--.     .. +.|.+ -+.|-|+-.+.|+...........+.+..++.++|.+-
T Consensus        32 ~GTa~~L~~~Gi~~~~V~Ki~e~g~p~v~d~i~~~g~I~lVINt~~~~~~~~~~~Dg~~IRr~Av~~~IP~~T  104 (112)
T cd00532          32 GGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT  104 (112)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEC
T ss_conf             6899999987983489850487899889999866896799998888887733245489999999976999884


No 415
>PRK09615 ggt gamma-glutamyltranspeptidase periplasmic precursor; Reviewed
Probab=23.70  E-value=47  Score=14.01  Aligned_cols=14  Identities=29%  Similarity=0.285  Sum_probs=7.3

Q ss_pred             CEEEEECHHHHHHH
Q ss_conf             34786100588787
Q gi|254780420|r  279 PMFGICLGHQLLGL  292 (396)
Q Consensus       279 PilGIClGhQ~l~~  292 (396)
                      |-.||.|-.|+-..
T Consensus       422 p~tGi~lNN~~~~F  435 (581)
T PRK09615        422 GESGILLNNQMDDF  435 (581)
T ss_pred             CCCCEEECCCCCCC
T ss_conf             89464776665355


No 416
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=23.69  E-value=52  Score=13.73  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             8537888876014161425617321689736845-882342046533321023666404654434552417989999742
Q gi|254780420|r   40 CFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG-VNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSC  118 (396)
Q Consensus        40 VFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyG-vn~~d~ES~~~~~~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~  118 (396)
                      |=.|..+-|++...           .-|-||+|. .|.|..-+..+-       +|+....   ++  ....+ +-|++.
T Consensus        44 Vgv~~~~dyP~~a~-----------~lp~VG~~~~~~~E~IlaL~PD-------LVia~~~---~~--~~~~~-~~L~~~   99 (265)
T PRK03379         44 VGVSSYSDYPPQAQ-----------KIEQVSTWQGMNLERIVALKPD-------LVLAWRG---GN--AERQV-DQLASL   99 (265)
T ss_pred             EEEECCCCCCHHHH-----------CCCCCCCCCCCCHHHHHHHCCC-------EEEEECC---CC--CHHHH-HHHHHC
T ss_conf             88668899986785-----------4870278889899999963999-------8999568---89--58999-999816


Q ss_pred             CCCEECCCCHHHH---HHHHHHCCCCC
Q ss_conf             7832112576899---99998539842
Q gi|254780420|r  119 GIIGLSGIDTRAL---TVWIRDYGVSN  142 (396)
Q Consensus       119 ~IpgI~GIDTRaL---Tk~IRe~G~~~  142 (396)
                      |||-+ -+|.+.|   ...||.-|...
T Consensus       100 GI~v~-~~~~~sl~di~~~i~~lG~~~  125 (265)
T PRK03379        100 GIKVM-WVDATSIEQIADALRQLAPWS  125 (265)
T ss_pred             CCEEE-ECCCCCHHHHHHHHHHHHHHC
T ss_conf             97588-359999999999999999865


No 417
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.47  E-value=52  Score=13.71  Aligned_cols=25  Identities=8%  Similarity=0.227  Sum_probs=13.4

Q ss_pred             HHHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf             1222102578634786100588787
Q gi|254780420|r  268 PIICKLVDSGMPMFGICLGHQLLGL  292 (396)
Q Consensus       268 ~~~~~~~~~~iPilGIClGhQ~l~~  292 (396)
                      ....+++...-|.-+|+-....+|+
T Consensus       167 ~a~~~ll~~~~~~~AI~~~nD~~A~  191 (269)
T cd06287         167 AACAQLLAQHPDLDALCVPVDAFAV  191 (269)
T ss_pred             HHHHHHHCCCCCCCEEEEECHHHHH
T ss_conf             9999997179999779982799999


No 418
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=23.43  E-value=35  Score=14.97  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCC-CCCCEEEEECH
Q ss_conf             99996796410232222202454133046574464413578899858888841011211012221025-78634786100
Q gi|254780420|r  208 VVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVD-SGMPMFGICLG  286 (396)
Q Consensus       208 IvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~-~~iPilGIClG  286 (396)
                      --++|.=-..+.+|.|.+.|..|-|+.|-.+-....+.+.+--++       .... .+++.++.+.. .+|=.+|-|.|
T Consensus       120 ~yI~DL~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~-------e~l~-~aid~V~~itg~~dInliGyC~G  191 (445)
T COG3243         120 FYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYIL-------EGLS-EAIDTVKDITGQKDINLIGYCVG  191 (445)
T ss_pred             EEEEECCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHHHH-------HHHH-HHHHHHHHHHCCCCCCEEEECCC
T ss_conf             247867877408999997598368996158607655346999999-------9999-99999998747651235546145


Q ss_pred             HHHHHHHCCC
Q ss_conf             5887875285
Q gi|254780420|r  287 HQLLGLALGA  296 (396)
Q Consensus       287 hQ~l~~a~G~  296 (396)
                      =-+++.|.+.
T Consensus       192 Gt~~~~a~a~  201 (445)
T COG3243         192 GTLLAAALAL  201 (445)
T ss_pred             HHHHHHHHHH
T ss_conf             6999999997


No 419
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.34  E-value=53  Score=13.69  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=35.7

Q ss_pred             CCCEEEEEE-------CCCCCHHHHHHHHHCC--CCEEEECCCCHHHHHHCCCCEEEECCCC
Q ss_conf             771499996-------7964102322222024--5413304657446441357889985888
Q gi|254780420|r  204 AKYHVVCID-------YGIRSNLLRVLSSLGC--RITIVGAETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       204 ~~~kIvvID-------fGiK~nIlr~L~~~g~--~v~Vvp~~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      .+++|+++|       -=+|.||.+.|.+.+.  ..+|+=..-.+++|..+.-.-+.|++|-
T Consensus       173 h~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gq  234 (325)
T COG4586         173 HPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQ  234 (325)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHEEEEECCC
T ss_conf             89838974487457514389999999999877537369998411213888634369960782


No 420
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=23.28  E-value=47  Score=14.05  Aligned_cols=93  Identities=19%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHH---HHHC------CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf             79641023222220245413304657446---4413------57889985888884101121101222102578634786
Q gi|254780420|r  213 YGIRSNLLRVLSSLGCRITIVGAETSYKD---IMSL------QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI  283 (396)
Q Consensus       213 fGiK~nIlr~L~~~g~~v~Vvp~~~~~~~---i~~~------~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI  283 (396)
                      ||.=+-++|.|.++|...+|+|--+++..   .+..      --..|+|.-.-|. ...  -..+.+..+... --.+.|
T Consensus        89 YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgr-t~v--pe~e~l~~la~~-~aTm~I  164 (254)
T COG2875          89 YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGR-TPV--PEKESLAALAKH-GATMVI  164 (254)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEECCCCCEEEEEECCCCC-CCC--CCHHHHHHHHHC-CCEEEE
T ss_conf             8899999999997699859937905999999983854405774106999713468-789--966589999854-862686


Q ss_pred             ECHHHHHHHHCCCCCCCCCCCCCCCCCCCE
Q ss_conf             100588787528544667767521011234
Q gi|254780420|r  284 CLGHQLLGLALGAQTVKMYQGHHGVNHPVK  313 (396)
Q Consensus       284 ClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~  313 (396)
                      -||-|.|...    +.+|.-||.+..-||-
T Consensus       165 ~L~v~~I~~v----v~~L~~g~y~~dtPVa  190 (254)
T COG2875         165 FLGVHAIDKV----VEELLEGGYPPDTPVA  190 (254)
T ss_pred             EEHHHHHHHH----HHHHHCCCCCCCCCEE
T ss_conf             5255689999----9998607899999789


No 421
>pfam06511 IpaD Invasion plasmid antigen IpaD. This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery.
Probab=23.25  E-value=53  Score=13.68  Aligned_cols=19  Identities=16%  Similarity=0.483  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             1689999999999735788
Q gi|254780420|r  378 SYYLFSTFIDFMHKRKTMC  396 (396)
Q Consensus       378 ~~~~F~~F~~~i~~~k~~~  396 (396)
                      +..|||+.+......-+.|
T Consensus       311 ansl~dnlvkvlsstiss~  329 (337)
T pfam06511       311 ANSLFDNLVKVLSSTISSC  329 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             0278999999999887878


No 422
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.23  E-value=49  Score=13.94  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCC--CCHHHHHHHCC
Q ss_conf             02322222024541330465744644135788998588888410112--11012221025
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV--YSSPIICKLVD  275 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~--~~~~~~~~~~~  275 (396)
                      .-|-.|.+.|| ++.-||.+..+++.  +||-+++-=-||++.....  .+...++++++
T Consensus        72 ~~L~~lan~~~-lE~H~w~sr~~~~~--~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~  128 (227)
T cd04861          72 AGLVWLANLGA-IELHPWLSRADDLE--RPDRLVFDLDPGPGVPFEDVVEAALLLRELLD  128 (227)
T ss_pred             HHHHHHHHHCC-EEECCCCCCCCCCC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999987093-76217767667778--99879997899879999999999999999999


No 423
>pfam08918 PhoQ_Sensor PhoQ Sensor. The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane.
Probab=23.18  E-value=49  Score=13.88  Aligned_cols=76  Identities=20%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             HHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCEECCCCCCC
Q ss_conf             99997427832112576899999985398423663276545897898887741588743210110133332111686534
Q gi|254780420|r  112 DAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWK  191 (396)
Q Consensus       112 ~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~dL~~~Vs~~~~~~~~~~~~~  191 (396)
                      .+||+++|   .+.|||.-=        +.++++..       -..+.++++++..-+...+.-.|.+.. |.-      
T Consensus       102 ~eWL~k~g---~~Eidtd~~--------~s~~~L~~-------~~~~q~~L~~~d~~d~~~lTHSVaVN~-Y~A------  156 (180)
T pfam08918       102 PEWLKKTG---FHELDTDTD--------TSSALLGN-------NPEAQDQLKAYDDNDDNELTHSVAVNV-YPA------  156 (180)
T ss_pred             HHHCCCCC---CEEEECCCC--------HHHHHHCC-------CHHHHHHHHHCCCCCCCCCEEEEEEEC-CCC------
T ss_conf             97605799---468764765--------47887656-------989999987546778873268899852-315------


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf             4543443467777714999967964102322222
Q gi|254780420|r  192 WGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSS  225 (396)
Q Consensus       192 ~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~  225 (396)
                              ...-....|||+|-     |-.+|.+
T Consensus       157 --------T~~lP~LtIVVVDt-----IPqeLq~  177 (180)
T pfam08918       157 --------TARLPALTIVVVDT-----IPQELQR  177 (180)
T ss_pred             --------CCCCCCEEEEEECC-----CCHHHHH
T ss_conf             --------35798608999607-----8778742


No 424
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=22.99  E-value=41  Score=14.48  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=31.2

Q ss_pred             CEEEEEE--C-----CCCCHHHHHHHH----HCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             1499996--7-----964102322222----0245413304657446441357889985888884
Q gi|254780420|r  206 YHVVCID--Y-----GIRSNLLRVLSS----LGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDP  259 (396)
Q Consensus       206 ~kIvvID--f-----GiK~nIlr~L~~----~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP  259 (396)
                      ++|.++|  +     -.+..+.+.|.+    .|..+..+-+|  .++...+.=.-+++++|||.-
T Consensus       147 P~iLllDEPt~~LD~~~r~~l~~ll~~l~~~~g~Til~vTHd--l~ea~~ladrv~vm~~gp~~i  209 (255)
T PRK11248        147 PQLLLLDEPFGALDAFTREQMQELLLKLWQETGKQVLLITHD--IEEAVFMATELVLLSPGPGRV  209 (255)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHCCEEEEEECCCEEE
T ss_conf             999998088777998999999999999999619999998868--999999699999982899089


No 425
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=22.77  E-value=54  Score=13.61  Aligned_cols=186  Identities=21%  Similarity=0.246  Sum_probs=108.6

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCEE----EEEEEEECCCCCCCCCCCCCCCCCCEEEECC---C-CCCCCCCCHHHHCCC
Q ss_conf             8966899728987999975676248----8889853788887601416142561732168---9-736845882342046
Q gi|254780420|r   11 KPTAVLVLADGSVIEGMGCGATGSI----QAEICFNTSLTGYQEILTDPSYLGQIVNFTF---P-HIGNVGVNSEDFESI   82 (396)
Q Consensus        11 ~~~A~L~LedGt~f~G~~fG~~~~~----~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~---P-~IGNyGvn~~d~ES~   82 (396)
                      .-+-.++-|+|.+|.|.--=+.++.    .-|=.|.-+-.|.-|-++  ||+|--+-|.-   | +|---||++-+..-.
T Consensus       102 dGkKvrL~E~gl~~~G~R~~~rg~~~~~~~ia~~~~~A~~~l~~r~e--affgNTi~fi~sE~pllidg~gIPD~~n~~~  179 (395)
T COG4825         102 DGKKVRLREGGLVYKGDRRLIRGTERTDHDIADLMREAKSGLAERLE--AFFGNTIEFIKSESPLLIDGIGIPDLDNDLR  179 (395)
T ss_pred             CCCEEEEECCCEEECCCEEHCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHCHHHHHHCCCHHHHCCCCCCCCCCHHC
T ss_conf             67368872276111030000036503624499999987764999999--9860579887325644416889986301204


Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf             53332102366640465443455241798999974278321125768999999853984236632765458978988877
Q gi|254780420|r   83 SRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERA  162 (396)
Q Consensus        83 ~~~~~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~  162 (396)
                      +++      -+||...   +|+-.--++|..|+++.++.-| |||+-|=+  +|+.|-...+|.-+++.- ..+.+..  
T Consensus       180 gR~------VlIva~~---~~~~~dLk~lk~fi~ey~pvlI-gVdgaAD~--l~~~GykP~lIvGdpd~i-~~~~Lr~--  244 (395)
T COG4825         180 GRH------VLIVADE---PSFEDDLKSLKPFIKEYQPVLI-GVDGAADV--LRKAGYKPQLIVGDPDQI-STEALRC--  244 (395)
T ss_pred             CCE------EEEECCC---CCHHHHHHHHHHHHHHHCCEEE-EECCHHHH--HHHCCCCCCEEECCCCHH-HHHHHHC--
T ss_conf             757------9997389---8668889998888875087799-70550788--997479864465380121-0888841--


Q ss_pred             HHCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEE--EECCCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf             415887432101101333321116865344543443467777714999--967964102322222024541330465744
Q gi|254780420|r  163 KNWSGLKGAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVC--IDYGIRSNLLRVLSSLGCRITIVGAETSYK  240 (396)
Q Consensus       163 ~~~~~~~~~dL~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvv--IDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~  240 (396)
                        -         ++|                              |+-  .|=+.-  =+.++..+|.--+.+|.--+..
T Consensus       245 --g---------a~v------------------------------vlpad~dGhAp--GleRiQdLGvgAmTFP~~gsst  281 (395)
T COG4825         245 --G---------AKV------------------------------VLPADADGHAP--GLERIQDLGVGAMTFPAAGSST  281 (395)
T ss_pred             --C---------CCE------------------------------EECCCCCCCCH--HHHHHHHCCCCEEECCCCCCHH
T ss_conf             --6---------626------------------------------65357888870--0789986286513136678602


Q ss_pred             HH---HH--CCCCEEEECCCC
Q ss_conf             64---41--357889985888
Q gi|254780420|r  241 DI---MS--LQPDGVLLSNGP  256 (396)
Q Consensus       241 ~i---~~--~~pdgi~lSnGP  256 (396)
                      ++   ++  ..+.-+++-++|
T Consensus       282 DlAllLAd~hga~~lv~vG~~  302 (395)
T COG4825         282 DLALLLADHHGAALLVTVGHR  302 (395)
T ss_pred             HHHHHHHHCCCCCEEEECCCC
T ss_conf             389998741582027861774


No 426
>pfam09998 DUF2239 Uncharacterized protein conserved in bacteria (DUF2239). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=22.76  E-value=54  Score=13.61  Aligned_cols=42  Identities=21%  Similarity=0.336  Sum_probs=35.8

Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCC
Q ss_conf             236664046544345524179899997427832112576899999985398
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGV  140 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~  140 (396)
                      --|+|-||.+.-|-||       +||..|  ||=.-+--|.|+-.-|..+.
T Consensus        72 KLGVVaREVTLLPRHW-------dWLa~Q--pGGASvaLRkLVd~Arr~~~  113 (173)
T pfam09998        72 KLGVVAREVTLLPRHW-------DWLAAQ--PGGASVALRKLVEEARRAHA  113 (173)
T ss_pred             CCCEEEEEEECCCHHH-------HHHHCC--CCCHHHHHHHHHHHHHHCCC
T ss_conf             7552421453252467-------998169--98463999999999985388


No 427
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.75  E-value=54  Score=13.61  Aligned_cols=84  Identities=17%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             ECCCCCHHH-HHHHHHCCCCEEEECCCCHHHHH----HCCCCEEEECCCCC--CCCCCCCCCHHHHHHH-CCCCCCEEEE
Q ss_conf             679641023-22222024541330465744644----13578899858888--8410112110122210-2578634786
Q gi|254780420|r  212 DYGIRSNLL-RVLSSLGCRITIVGAETSYKDIM----SLQPDGVLLSNGPG--DPAVTSVYSSPIICKL-VDSGMPMFGI  283 (396)
Q Consensus       212 DfGiK~nIl-r~L~~~g~~v~Vvp~~~~~~~i~----~~~pdgi~lSnGPG--dP~~~~~~~~~~~~~~-~~~~iPilGI  283 (396)
                      |+|.  ||+ ..|+..|++|+-+-.|++.+++.    +.+||-|-||--=-  -|. ... .++.+++. +..++||+-=
T Consensus        96 ~lG~--~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~-~~~-~i~~lr~~~~~~~v~i~vG  171 (201)
T cd02070          96 DIGK--NLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG-MKE-VIEALKEAGLRDKVKVMVG  171 (201)
T ss_pred             HHHH--HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHH-HHH-HHHHHHHCCCCCCCEEEEE
T ss_conf             8999--99999998789779977899997999999997298999996256688999-999-9999997289889859998


Q ss_pred             EC-HHHHHHHHCCCCCC
Q ss_conf             10-05887875285446
Q gi|254780420|r  284 CL-GHQLLGLALGAQTV  299 (396)
Q Consensus       284 Cl-GhQ~l~~a~G~~~~  299 (396)
                      .. =.+-++...|+.-+
T Consensus       172 G~a~~~~~a~~~GAD~~  188 (201)
T cd02070         172 GAPVNQEFADEIGADGY  188 (201)
T ss_pred             CCCCCHHHHHHHCCCEE
T ss_conf             80179999999298878


No 428
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=22.74  E-value=51  Score=13.78  Aligned_cols=48  Identities=21%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE--ECHHHHHHHH
Q ss_conf             57889985888884101121101222102578634786--1005887875
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGI--CLGHQLLGLA  293 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGI--ClGhQ~l~~a  293 (396)
                      +.|+|=.+.|||=+-.......-...-....++|+.||  +.||-+.++-
T Consensus        72 ~id~IAvT~gPGL~g~L~VG~~~Ak~La~~~~~Pli~VnH~~gHi~~~~l  121 (335)
T PRK09604         72 DIDAIAVTAGPGLVGALLVGATAAKALALALNKPLIGVNHLEGHLLAARL  121 (335)
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHC
T ss_conf             89789994799961139999999999999809982411257777766540


No 429
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=22.60  E-value=54  Score=13.59  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE--CHHHHHH
Q ss_conf             578899858888841011211012221025786347861--0058878
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGIC--LGHQLLG  291 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIC--lGhQ~l~  291 (396)
                      +.|+|-.+.|||=+...-....-...-....++|+.||-  .||-+.+
T Consensus        77 did~IAvT~gPGL~g~L~VG~~~AK~La~~~~~Pli~VnHlegHi~~~  124 (348)
T PTZ00340         77 DISLICYTKGPGMGAPLAVGATVAKTLSLLWGKPLVGVNHCVAHIEMG  124 (348)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf             185799727998516589999999999998099835213024334212


No 430
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=22.34  E-value=55  Score=13.56  Aligned_cols=38  Identities=26%  Similarity=0.607  Sum_probs=23.6

Q ss_pred             CCCEEEECCCCCCCCCC--CCCCHHHHHH-HCCCCCCEEEEEC
Q ss_conf             57889985888884101--1211012221-0257863478610
Q gi|254780420|r  246 QPDGVLLSNGPGDPAVT--SVYSSPIICK-LVDSGMPMFGICL  285 (396)
Q Consensus       246 ~pdgi~lSnGPGdP~~~--~~~~~~~~~~-~~~~~iPilGICl  285 (396)
                      +.|.|+|  |||+|-..  .....+-+++ +.+.+.|+..||=
T Consensus       186 ~AD~IVi--gPsnp~tSI~PiL~VpgireAL~~s~a~vVaVSP  226 (309)
T PRK13606        186 DADVVVI--GPSNPVTSIGPILAVPGIREALRETGAPVVAVSP  226 (309)
T ss_pred             HCCCEEE--CCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEECC
T ss_conf             3992898--6897503531131572699999857998899897


No 431
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.10  E-value=56  Score=13.52  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=28.3

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHH----HCCCCEEEECCCC
Q ss_conf             02322222024541330465744644----1357889985888
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGAETSYKDIM----SLQPDGVLLSNGP  256 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~~~~~~~i~----~~~pdgi~lSnGP  256 (396)
                      .+...|...|+++..+..+.+.+++.    ..+||.|-+|--=
T Consensus        18 ~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgiS~~~   60 (125)
T cd02065          18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALS   60 (125)
T ss_pred             HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCH
T ss_conf             9999999789989989998899999999986089999985211


No 432
>TIGR01354 cyt_deam_tetra cytidine deaminase; InterPro: IPR006262   Cytidine deaminase is a small homotetrameric zinc metalloprotein. It is found in humans and most bacteria. A related homodimeric form, IPR006263 from INTERPRO, with a much larger subunit is found in E. coli  and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=22.08  E-value=56  Score=13.52  Aligned_cols=72  Identities=8%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CCCEE-EEEECCCCCHHHHHHHHHCCCCEEEEC--CCCHHH------HHH----CC----CCEEEECCCCCC-CCCCCCC
Q ss_conf             77149-999679641023222220245413304--657446------441----35----788998588888-4101121
Q gi|254780420|r  204 AKYHV-VCIDYGIRSNLLRVLSSLGCRITIVGA--ETSYKD------IMS----LQ----PDGVLLSNGPGD-PAVTSVY  265 (396)
Q Consensus       204 ~~~kI-vvIDfGiK~nIlr~L~~~g~~v~Vvp~--~~~~~~------i~~----~~----pdgi~lSnGPGd-P~~~~~~  265 (396)
                      .+++| |++..  +.+  +.+  .|++|+-=.|  ..-+|.      |.+    -+    .+.|.+.....+ +...=-.
T Consensus        19 S~F~VGAa~~t--~dg--~~f--~G~NvENASY~~~~CAEr~Ai~~~~~~yP~GG~r~G~f~~~~~~~~~~~D~~~PCG~   92 (135)
T TIGR01354        19 SNFKVGAALLT--KDG--RVF--TGVNVENASYGLTICAERSAIGKAISAYPAGGRRDGKFVAIAVAASANDDSVSPCGA   92 (135)
T ss_pred             CCCCEEEEEEE--CCC--CEE--EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCH
T ss_conf             68811699985--699--889--876342136767046899999999860887875355127999862698883267603


Q ss_pred             CHHHHHHHCC-CCCCEE
Q ss_conf             1012221025-786347
Q gi|254780420|r  266 SSPIICKLVD-SGMPMF  281 (396)
Q Consensus       266 ~~~~~~~~~~-~~iPil  281 (396)
                      +...+.++.. .+.||+
T Consensus        93 CRQvl~EF~~h~d~~i~  109 (135)
T TIGR01354        93 CRQVLAEFAKHPDTKII  109 (135)
T ss_pred             HHHHHHHHCCCCCCEEE
T ss_conf             57778875089983389


No 433
>PRK13984 putative oxidoreductase; Provisional
Probab=21.88  E-value=56  Score=13.49  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=25.1

Q ss_pred             HHHHHHCCCCE---EEECCCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             22222024541---330465744644135788998588888410
Q gi|254780420|r  221 RVLSSLGCRIT---IVGAETSYKDIMSLQPDGVLLSNGPGDPAV  261 (396)
Q Consensus       221 r~L~~~g~~v~---Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~  261 (396)
                      ..|.+.|+++.   .+--+.+++++++ .+|+|||.-|-+.|..
T Consensus       341 ~~i~~~GV~f~~n~~VGkDit~eeL~~-~yDAVfLa~Ga~~~r~  383 (604)
T PRK13984        341 AFIEALGVKIHTNTRVGKDISLEELRE-KHDAVFVSTGFTLGRS  383 (604)
T ss_pred             HHHHHCCCEEECCCEECCCCCHHHHHH-CCCEEEEECCCCCCCC
T ss_conf             999972989976857798478999970-5899999538887766


No 434
>PRK07337 aminotransferase; Validated
Probab=21.70  E-value=57  Score=13.47  Aligned_cols=13  Identities=46%  Similarity=0.979  Sum_probs=5.8

Q ss_pred             CCEEEECCCCCCCC
Q ss_conf             78899858888841
Q gi|254780420|r  247 PDGVLLSNGPGDPA  260 (396)
Q Consensus       247 pdgi~lSnGPGdP~  260 (396)
                      ..+|+|.| |.+|.
T Consensus       164 tk~iil~n-P~NPt  176 (388)
T PRK07337        164 TRGVLLAS-PSNPT  176 (388)
T ss_pred             CEEEEECC-CCCCC
T ss_conf             53999789-97988


No 435
>cd01142 TroA_e Periplasmic binding protein TroA_e.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.53  E-value=57  Score=13.45  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=17.2

Q ss_pred             CCCHHHHHHCCCCEEEECCCC
Q ss_conf             657446441357889985888
Q gi|254780420|r  236 ETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       236 ~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      ..+.|.|++++||-||++++.
T Consensus       209 ~is~E~i~~~nPDvI~~~~~~  229 (289)
T cd01142         209 EVSLEQLLKWNPDVIIVGNAD  229 (289)
T ss_pred             CCCHHHHHHHCCCEEEECCCC
T ss_conf             428999986599889984764


No 436
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=21.52  E-value=50  Score=13.83  Aligned_cols=21  Identities=48%  Similarity=0.793  Sum_probs=16.3

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             8898537888876014161425617321689736845
Q gi|254780420|r   37 AEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG   73 (396)
Q Consensus        37 GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyG   73 (396)
                      |++||.||+|        ||        -.|||||-+
T Consensus        19 ~~~v~~tG~~--------PS--------G~~HIGnfr   39 (355)
T pfam01921        19 GEILVETGIG--------PS--------GLPHIGNFR   39 (355)
T ss_pred             CCEEEECCCC--------CC--------CCCEEECCC
T ss_conf             8589952668--------99--------886421560


No 437
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.51  E-value=57  Score=13.44  Aligned_cols=42  Identities=24%  Similarity=0.502  Sum_probs=27.0

Q ss_pred             HHHHHHCCCC---EEEECCCCHHHHHH-CCCCEEEECCCCCCCCCC
Q ss_conf             2222202454---13304657446441-357889985888884101
Q gi|254780420|r  221 RVLSSLGCRI---TIVGAETSYKDIMS-LQPDGVLLSNGPGDPAVT  262 (396)
Q Consensus       221 r~L~~~g~~v---~Vvp~~~~~~~i~~-~~pdgi~lSnGPGdP~~~  262 (396)
                      ..|.+.|+++   +++--+.+++++++ ..+|+|||.-|-|.|...
T Consensus       490 ~~l~~lGVef~~n~~VGkditl~eL~~e~gyDAVFIg~GA~~~~~l  535 (993)
T PRK12775        490 QRLKDIGVKFETNKVVGKTFTIPQLMNDRGFDAVFVAAGAGAPTFL  535 (993)
T ss_pred             HHHHHCCEEEECCCEECCCCCHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             9998789499838886560789999534598989995587867318


No 438
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=21.49  E-value=55  Score=13.55  Aligned_cols=40  Identities=30%  Similarity=0.364  Sum_probs=26.1

Q ss_pred             CCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf             898799997567624888898537888876014161425617321689736845882
Q gi|254780420|r   20 DGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNS   76 (396)
Q Consensus        20 dGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~   76 (396)
                      .|-.-.|..||-+. +.||+.|            ||+|.+.-||+.    |-+|+=.
T Consensus       149 ~G~s~YGN~~G~Pt-v~G~~~F------------~~~y~~nplv~a----~~vG~v~  188 (736)
T PRK01213        149 AGIGGYGNCVGVPT-VGGEVYF------------DPSYNGNPLVNA----MCVGLVE  188 (736)
T ss_pred             CCHHHCCCCCCCCC-CCEEEEE------------CCCCCCCEEEEE----EEEEEEE
T ss_conf             43210574446575-3338897------------156477623675----5788741


No 439
>KOG1907 consensus
Probab=21.48  E-value=44  Score=14.27  Aligned_cols=88  Identities=16%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             CCCCEEEEEE-CCCCC--HHHHHHHHHCCCCEEEECCCCHHHHHHC-----CCCEEEECCCC--CCCC------CCCCC-
Q ss_conf             7771499996-79641--0232222202454133046574464413-----57889985888--8841------01121-
Q gi|254780420|r  203 DAKYHVVCID-YGIRS--NLLRVLSSLGCRITIVGAETSYKDIMSL-----QPDGVLLSNGP--GDPA------VTSVY-  265 (396)
Q Consensus       203 ~~~~kIvvID-fGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~~~-----~pdgi~lSnGP--GdP~------~~~~~-  265 (396)
                      +..+|||+|- =|+--  -+.-++...|+++.=    .+-.|+++-     ++-||..-+|=  ||--      +.... 
T Consensus      1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~D----VtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ 1131 (1320)
T KOG1907        1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVD----VTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILF 1131 (1320)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEE----EEEEHHHCCCEEHHHHCCEEEECCCCHHHHHCCCCCHHHHEEE
T ss_conf             678706886110556279999999985881364----4620543571258670544652574367651454332443010


Q ss_pred             ---CHHHHHHHCC-CCCCEEEEECHHHHHHHHC
Q ss_conf             ---1012221025-7863478610058878752
Q gi|254780420|r  266 ---SSPIICKLVD-SGMPMFGICLGHQLLGLAL  294 (396)
Q Consensus       266 ---~~~~~~~~~~-~~iPilGIClGhQ~l~~a~  294 (396)
                         ...-+.++.. ...=-||||=|.|++++--
T Consensus      1132 ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg 1164 (1320)
T KOG1907        1132 NESVRSQFEAFFNRQDTFSLGICNGCQLMSRLG 1164 (1320)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHC
T ss_conf             733779999985378731220241759999864


No 440
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a 
Probab=21.47  E-value=57  Score=13.44  Aligned_cols=12  Identities=0%  Similarity=0.110  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             689999999999
Q gi|254780420|r  379 YYLFSTFIDFMH  390 (396)
Q Consensus       379 ~~~F~~F~~~i~  390 (396)
                      ..-++.++++|+
T Consensus       238 ~~a~~~L~~~i~  249 (269)
T cd06275         238 ELAVNMLLERIK  249 (269)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999966


No 441
>PRK01917 hemerythrin family protein; Provisional
Probab=21.41  E-value=57  Score=13.46  Aligned_cols=14  Identities=21%  Similarity=0.311  Sum_probs=5.6

Q ss_pred             HHHHHHHHCCCCEE
Q ss_conf             23222220245413
Q gi|254780420|r  219 LLRVLSSLGCRITI  232 (396)
Q Consensus       219 Ilr~L~~~g~~v~V  232 (396)
                      ..+.|++.|+.+.+
T Consensus       124 la~~Lk~~G~~~~~  137 (142)
T PRK01917        124 MVSHLKMLGFAMVD  137 (142)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99999980982013


No 442
>TIGR01922 purO_arch IMP cyclohydrolase; InterPro: IPR010191   This entry represents IMP cyclohydrolase, the final step in the biosynthesis of inosine monophosphate (IMP) in archaea . In bacteria this step is catalysed by a bifunctional enzyme (purH).; GO: 0003937 IMP cyclohydrolase activity, 0006164 purine nucleotide biosynthetic process, 0006188 IMP biosynthetic process.
Probab=21.39  E-value=56  Score=13.50  Aligned_cols=71  Identities=24%  Similarity=0.278  Sum_probs=41.5

Q ss_pred             HHHHHHCC-CCEEEECCCCHHHHHHCCC-----------CEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHH
Q ss_conf             22222024-5413304657446441357-----------88998588888410112110122210257863478610058
Q gi|254780420|r  221 RVLSSLGC-RITIVGAETSYKDIMSLQP-----------DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQ  288 (396)
Q Consensus       221 r~L~~~g~-~v~Vvp~~~~~~~i~~~~p-----------dgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ  288 (396)
                      |.+..+.- .+.|||-+-+..+-. -||           +-+++|||-    +.+ .+.+   |+ +.+.|.        
T Consensus        31 R~~~~~~~n~~~vvP~~~~e~~~f-rNPYvtYnC~rivd~~~Vv~NG~----htD-~IAd---Kl-~~G~pp--------   92 (209)
T TIGR01922        31 RKIEVREENAVAVVPEDDSEITEF-RNPYVTYNCIRIVDETAVVSNGS----HTD-PIAD---KL-ELGVPP--------   92 (209)
T ss_pred             CEEEECCCCCEEEEECCCCCCEEE-CCCCEEEEEEEEECCEEEECCCC----CCC-CHHH---HH-HCCCCH--------
T ss_conf             715660798379840688720020-48856554466646868973687----226-1134---55-448986--------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             87875285446677675210112
Q gi|254780420|r  289 LLGLALGAQTVKMYQGHHGVNHP  311 (396)
Q Consensus       289 ~l~~a~G~~~~kl~~GhrG~N~P  311 (396)
                        =-|++.-+.=|-|-|---|-|
T Consensus        93 --RdAL~~~l~aMDYEkDeY~TP  113 (209)
T TIGR01922        93 --RDALASVLLAMDYEKDEYNTP  113 (209)
T ss_pred             --HHHHHHHHHHEEECCCCCCCC
T ss_conf             --898885131001013688877


No 443
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=21.39  E-value=56  Score=13.50  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=14.7

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             88898537888876014161425617321689736845
Q gi|254780420|r   36 QAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG   73 (396)
Q Consensus        36 ~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyG   73 (396)
                      -+++||+||+|        ||        -.|||||.+
T Consensus        18 k~~~v~~tG~~--------PS--------G~~HIGn~r   39 (354)
T cd00674          18 KEKYVVASGIS--------PS--------GLIHIGNFR   39 (354)
T ss_pred             CCCEEEECCCC--------CC--------CCCCCCCCC
T ss_conf             98589947879--------99--------886320550


No 444
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=21.36  E-value=58  Score=13.42  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=14.5

Q ss_pred             HHCCCCEEEECCC---CHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             2024541330465---74464413578899858888841
Q gi|254780420|r  225 SLGCRITIVGAET---SYKDIMSLQPDGVLLSNGPGDPA  260 (396)
Q Consensus       225 ~~g~~v~Vvp~~~---~~~~i~~~~pdgi~lSnGPGdP~  260 (396)
                      ..|+++..+|.+.   ..+.+.+.+||-|||.| |.+|.
T Consensus        98 ~~g~~~~~vp~~~~~~~~~~~~~~~~~lv~i~n-PNNPT  135 (332)
T PRK06425         98 THGIRISALPFNLINNNPEILNNYNFDLIFIVS-PDNPL  135 (332)
T ss_pred             HCCCEEEEECCCCCCCCHHHHHCCCCCEEEEEC-CCCCC
T ss_conf             869989995743332588888458989899941-81720


No 445
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=21.24  E-value=42  Score=14.35  Aligned_cols=166  Identities=16%  Similarity=0.225  Sum_probs=86.0

Q ss_pred             CCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCC-------------------------CCHHHHHHHHHHCCCCCCCCH
Q ss_conf             7832112576899999985398423663276545-------------------------897898887741588743210
Q gi|254780420|r  119 GIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQ-------------------------FDLEDLKERAKNWSGLKGAEL  173 (396)
Q Consensus       119 ~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~-------------------------~d~~~~~~~~~~~~~~~~~dL  173 (396)
                      =|.=+..=|+.+.+.++|++|..-.++.......                         .+.-.-.+++++-|.--..+-
T Consensus      1015 aV~qV~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~i~i~~~~~~~~s~~~~~L~~~W~ets~Q~qRLrdnp~Ca~~E~ 1094 (1401)
T TIGR01735      1015 AVIQVAEEDLAAVLELLRAAGLTALILGIGTPTDEPSIEISVNGATLLSEKRSELRDIWEETSFQLQRLRDNPECAEEEF 1094 (1401)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             36883241178999999864871333131401567778986088465025689999988889999998323733699999


Q ss_pred             HHC-------CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCC--HHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf             110-------133332111686534454344346777771499996-79641--02322222024541330465744644
Q gi|254780420|r  174 AKH-------VTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCID-YGIRS--NLLRVLSSLGCRITIVGAETSYKDIM  243 (396)
Q Consensus       174 ~~~-------Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvID-fGiK~--nIlr~L~~~g~~v~Vvp~~~~~~~i~  243 (396)
                      ...       .+.+-.|+.++.+      .....+.+.++|||+|= =|+=-  =+--.+.+-||++.    |..-+|++
T Consensus      1095 ~~~~~~~~p~l~~~l~fd~~~d~------~~P~I~~G~~PkvAILREqG~NG~~EMAaAF~rAGF~~~----DVhmsDL~ 1164 (1401)
T TIGR01735      1095 EGLKDRDEPGLKLSLTFDVNEDI------AAPFINKGVKPKVAILREQGVNGDIEMAAAFDRAGFEAI----DVHMSDLL 1164 (1401)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEE----EEEEEEHC
T ss_conf             98405788862023478865555------686223689861788850686700689999974589578----52310010


Q ss_pred             H-----CCCCEEEECCC--CCCCCCCCC-------C---CHHHHHHHCC-CCCCEEEEECHHHHHH-HHC
Q ss_conf             1-----35788998588--888410112-------1---1012221025-7863478610058878-752
Q gi|254780420|r  244 S-----LQPDGVLLSNG--PGDPAVTSV-------Y---SSPIICKLVD-SGMPMFGICLGHQLLG-LAL  294 (396)
Q Consensus       244 ~-----~~pdgi~lSnG--PGdP~~~~~-------~---~~~~~~~~~~-~~iPilGIClGhQ~l~-~a~  294 (396)
                      .     ..+.||+.-+|  -||-=...+       .   ...-+.+++. .+-=-||||=|-|+|+ |+-
T Consensus      1165 ~Grv~Ld~F~glvacGGFSYgDVLGag~GWA~SIlF~~~~~~qF~~Ff~rpdtf~LGVCNGCQm~snL~~ 1234 (1401)
T TIGR01735      1165 AGRVHLDEFRGLVACGGFSYGDVLGAGKGWAKSILFNPRLRDQFAAFFKRPDTFSLGVCNGCQMLSNLLE 1234 (1401)
T ss_pred             CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHH
T ss_conf             0566522455589971753021301124467766405778999998605888423032107899997643


No 446
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=21.10  E-value=58  Score=13.39  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             ECCCCHHHHHHCCCCEEEECCCC
Q ss_conf             04657446441357889985888
Q gi|254780420|r  234 GAETSYKDIMSLQPDGVLLSNGP  256 (396)
Q Consensus       234 p~~~~~~~i~~~~pdgi~lSnGP  256 (396)
                      |++.+++.+..++||-|++.+-+
T Consensus        74 p~~~~~~~i~~~k~Div~lG~D~   96 (140)
T COG0615          74 PWDIKFEDIEEYKPDIVVLGDDQ   96 (140)
T ss_pred             CCCCCHHHHHHHCCCEEEECCCC
T ss_conf             65467689999599999977987


No 447
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=21.05  E-value=58  Score=13.38  Aligned_cols=16  Identities=19%  Similarity=0.189  Sum_probs=8.6

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             6700168999999999
Q gi|254780420|r  374 GPQDSYYLFSTFIDFM  389 (396)
Q Consensus       374 GP~D~~~~F~~F~~~i  389 (396)
                      |=.|..-|.+++.+-+
T Consensus       366 GlEd~~DLi~DL~~AL  381 (384)
T PRK08574        366 GLEDVEDLIEDLDQAL  381 (384)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             1099999999999998


No 448
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported.  It is suggested that M
Probab=20.88  E-value=59  Score=13.35  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCH----HHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHC-CCCEE
Q ss_conf             6014161425617321689736845882----342046533321023666404654434552417989999742-78321
Q gi|254780420|r   49 QEILTDPSYLGQIVNFTFPHIGNVGVNS----EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSC-GIIGL  123 (396)
Q Consensus        49 qE~lTDPSY~gQIlvfT~P~IGNyGvn~----~d~ES~~~~~~~~~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~-~IpgI  123 (396)
                      ++++.||+-..=     ++..|-||...    -|++.....+ .     ++--+++.       ..|..+|..+ +++.+
T Consensus        59 ~~a~~Dp~i~aI-----~~~rGGyga~rlL~~LD~~~i~~~P-K-----~~iGySDi-------TaL~~al~~~~g~~t~  120 (308)
T cd07062          59 MAAFADPSIKAI-----IPTIGGDDSNELLPYLDYELIKKNP-K-----IFIGYSDI-------TALHLAIYKKTGLVTY  120 (308)
T ss_pred             HHHHHCCCCCEE-----EECCCCCCHHHHHHHCCHHHHHHCC-C-----EEEECCHH-------HHHHHHHHHHCCCEEE
T ss_conf             998629998999-----9917877788887646755686399-4-----89971464-------7999999997298699


Q ss_pred             CC
Q ss_conf             12
Q gi|254780420|r  124 SG  125 (396)
Q Consensus       124 ~G  125 (396)
                      +|
T Consensus       121 hG  122 (308)
T cd07062         121 YG  122 (308)
T ss_pred             EC
T ss_conf             78


No 449
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.85  E-value=59  Score=13.35  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=17.4

Q ss_pred             EEEEECCCCCH--HHHHHHHHCCC-CEEEECCCCHHHHH
Q ss_conf             99996796410--23222220245-41330465744644
Q gi|254780420|r  208 VVCIDYGIRSN--LLRVLSSLGCR-ITIVGAETSYKDIM  243 (396)
Q Consensus       208 IvvIDfGiK~n--Ilr~L~~~g~~-v~Vvp~~~~~~~i~  243 (396)
                      +++.|+-.-+.  +.....++|.+ +-.++.+++.+.+.
T Consensus       126 livpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~  164 (265)
T COG0159         126 LLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLK  164 (265)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf             985789866777899999976986798869999989999


No 450
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.85  E-value=59  Score=13.35  Aligned_cols=40  Identities=18%  Similarity=0.409  Sum_probs=25.7

Q ss_pred             HHHHHHCCCCE---EEECCCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             22222024541---330465744644135788998588888410
Q gi|254780420|r  221 RVLSSLGCRIT---IVGAETSYKDIMSLQPDGVLLSNGPGDPAV  261 (396)
Q Consensus       221 r~L~~~g~~v~---Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~  261 (396)
                      ..|.+.|+++.   .+--+.+++++++ ++|+|||.-|-+.|..
T Consensus       368 ~~l~~lGV~f~~n~~VGkDit~~eL~~-~yDAVflg~Ga~~~~~  410 (639)
T PRK12809        368 EIFTAMGIDFHLNCEIGRDITFSDLTS-EYDAVFIGVGTYGMMR  410 (639)
T ss_pred             HHHHHCCCEEEECCEECCCCCHHHHHH-HCCEEEEEECCCCCCC
T ss_conf             999864988991967798688999973-1798999736788854


No 451
>PRK06848 hypothetical protein; Validated
Probab=20.77  E-value=59  Score=13.34  Aligned_cols=12  Identities=25%  Similarity=0.479  Sum_probs=5.8

Q ss_pred             CEEEEECHHHHHHH
Q ss_conf             34786100588787
Q gi|254780420|r  279 PMFGICLGHQLLGL  292 (396)
Q Consensus       279 PilGIClGhQ~l~~  292 (396)
                      +==|+|.  |.|..
T Consensus        95 sPCG~CR--Qvl~E  106 (139)
T PRK06848         95 SPCGACR--ELISD  106 (139)
T ss_pred             CCCHHHH--HHHHH
T ss_conf             7827899--99999


No 452
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.75  E-value=59  Score=13.34  Aligned_cols=25  Identities=16%  Similarity=0.441  Sum_probs=17.7

Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9996796410232222202454133
Q gi|254780420|r  209 VCIDYGIRSNLLRVLSSLGCRITIV  233 (396)
Q Consensus       209 vvIDfGiK~nIlr~L~~~g~~v~Vv  233 (396)
                      +-+|=|+...-++.|.+.|+++.|.
T Consensus       173 I~VDGGIn~~ti~~l~~aGad~~V~  197 (224)
T PTZ00170        173 IQVDGGINPDTIDLAAEAGANVIVA  197 (224)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf             9995899989999999869999997


No 453
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=20.74  E-value=59  Score=13.34  Aligned_cols=38  Identities=16%  Similarity=0.369  Sum_probs=25.0

Q ss_pred             CCCHHHHHH----HCCCCEECCCC-----HHHHHHHHHHCCCCCEEEE
Q ss_conf             179899997----42783211257-----6899999985398423663
Q gi|254780420|r  108 NMHFDAWLK----SCGIIGLSGID-----TRALTVWIRDYGVSNSVIA  146 (396)
Q Consensus       108 ~~sL~~wL~----~~~IpgI~GID-----TRaLTk~IRe~G~~~a~I~  146 (396)
                      +..|--++.    ..++.||+|=+     |+.|+..++..| .++.++
T Consensus        96 di~L~~~~~~~~~~~~~~aITGTnGKtTTT~L~~~~L~~~G-~~a~~g  142 (476)
T TIGR01087        96 DIELALRLVDFPEPAKVVAITGTNGKTTTTSLLYHLLKAAG-LKAVLG  142 (476)
T ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf             67999974157898737999726860799999999998469-977862


No 454
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=20.64  E-value=59  Score=13.32  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=17.1

Q ss_pred             HHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf             9974278321125768999999853984236632
Q gi|254780420|r  114 WLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAH  147 (396)
Q Consensus       114 wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~  147 (396)
                      +...+.+.-+-|+  +.|...||++|...|+.++
T Consensus        80 ~~~~~~~~~~pG~--~elL~~L~~~gi~~av~T~  111 (220)
T TIGR03351        80 AYDDGPPVALPGA--EEAFRSLRSSGIKVALTTG  111 (220)
T ss_pred             HHHCCCCEECCCH--HHHHHHHHHCCCCEEEECC
T ss_conf             9861898067119--9999999987997766359


No 455
>pfam07801 DUF1647 Protein of unknown function (DUF1647). The sequences making up this family are all derived from hypothetical proteins expressed by C. elegans. The region in question is approximately 160 amino acids long. The GO annotation for this protein indicates the protein to be involved in nematode larval development and to have a positive regulation on growth rate.
Probab=20.54  E-value=60  Score=13.31  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=35.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC-----HHHHHHCCCCEEEEC
Q ss_conf             149999679641023222220245413304657-----446441357889985
Q gi|254780420|r  206 YHVVCIDYGIRSNLLRVLSSLGCRITIVGAETS-----YKDIMSLQPDGVLLS  253 (396)
Q Consensus       206 ~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~-----~~~i~~~~pdgi~lS  253 (396)
                      .|+++.++|++.+-++.|.+..+.+++--.|++     ....+.++..+++|.
T Consensus        90 ~K~ILY~L~ls~~~i~~L~~~~~n~E~R~Fn~S~YP~yV~nw~~YrFKpLIlA  142 (142)
T pfam07801        90 HKYILYSLNLSEAYISKLPKNPKNFEFRVFNTSKYPKYVNNWMEYRFKPLILA  142 (142)
T ss_pred             CCEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEC
T ss_conf             65799846888889987343777448885368778378888987334100309


No 456
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.40  E-value=60  Score=13.29  Aligned_cols=39  Identities=21%  Similarity=0.392  Sum_probs=25.9

Q ss_pred             HHHHHCCCCE---EEECCCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             2222024541---330465744644135788998588888410
Q gi|254780420|r  222 VLSSLGCRIT---IVGAETSYKDIMSLQPDGVLLSNGPGDPAV  261 (396)
Q Consensus       222 ~L~~~g~~v~---Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~  261 (396)
                      .|.+.|+++.   .+--+.+++++++ ++|+|||.-|-+.|..
T Consensus       386 ~l~~lGV~f~~n~~VGkDitl~eL~~-~yDAVfla~Ga~~~r~  427 (654)
T PRK12769        386 IFSAMGIHFELNCEVGKDISLESLLE-DYDAVFVGVGTYRSMK  427 (654)
T ss_pred             HHHHCCCEEECCCEECCCCCHHHHHH-CCCEEEEECCCCCCCC
T ss_conf             99826988983717687658999973-6998999517887866


No 457
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=20.35  E-value=60  Score=13.28  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf             35788998588888410112110122210257863478610
Q gi|254780420|r  245 LQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICL  285 (396)
Q Consensus       245 ~~pdgi~lSnGPGdP~~~~~~~~~~~~~~~~~~iPilGICl  285 (396)
                      ..||.+|++    ||..-    ...+++...-+||+.|||=
T Consensus       117 ~eP~lliV~----DP~~d----~~AV~EA~~~nIPvIal~D  149 (242)
T PTZ00254        117 QEPRLLIVT----DPRTD----HQAIREASYVNIPVIALCD  149 (242)
T ss_pred             CCCCEEEEE----CCCCC----HHHHHHHHHCCCCEEEEEC
T ss_conf             688889996----67544----0899999985998898616


No 458
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.30  E-value=60  Score=13.27  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             ECCCCCHHHH-HHHHHCCCCEEEECCCCHHHHH----HCCCCEEEECC
Q ss_conf             6796410232-2222024541330465744644----13578899858
Q gi|254780420|r  212 DYGIRSNLLR-VLSSLGCRITIVGAETSYKDIM----SLQPDGVLLSN  254 (396)
Q Consensus       212 DfGiK~nIlr-~L~~~g~~v~Vvp~~~~~~~i~----~~~pdgi~lSn  254 (396)
                      |.|  +||+. .|...|++|.=+-.|.+.+.+.    +.+||-|-||-
T Consensus       102 diG--kniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSa  147 (213)
T cd02069         102 DIG--KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSG  147 (213)
T ss_pred             CHH--HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             121--8999999997896688505899899999999974999999832


No 459
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.29  E-value=60  Score=13.27  Aligned_cols=115  Identities=18%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCCCCEE-EEEECCCCCH--HH----HHHHHHCCCCEEEECCCC-----HHHHHHCCCCEEEECCCCCCCCCCCCCCHHH
Q ss_conf             7777149-9996796410--23----222220245413304657-----4464413578899858888841011211012
Q gi|254780420|r  202 SDAKYHV-VCIDYGIRSN--LL----RVLSSLGCRITIVGAETS-----YKDIMSLQPDGVLLSNGPGDPAVTSVYSSPI  269 (396)
Q Consensus       202 ~~~~~kI-vvIDfGiK~n--Il----r~L~~~g~~v~Vvp~~~~-----~~~i~~~~pdgi~lSnGPGdP~~~~~~~~~~  269 (396)
                      ++.+ +| +++-=|--++  .+    +.+.+.|.+|+......+     +-..+.-++|.|++   |-|...... ..-+
T Consensus       157 Pnak-~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~---p~dn~i~s~-~~~l  231 (322)
T COG2984         157 PNAK-SIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI---PTDNLIVSA-IESL  231 (322)
T ss_pred             CCCE-EEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEE---ECCHHHHHH-HHHH
T ss_conf             8870-6999957988660899999999998779889998347632008999973478767998---660677888-9999


Q ss_pred             HHHHCCCCCCEEEEE-----------CHHH--HHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEE
Q ss_conf             221025786347861-----------0058--878752854466776752101123477897099
Q gi|254780420|r  270 ICKLVDSGMPMFGIC-----------LGHQ--LLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE  321 (396)
Q Consensus       270 ~~~~~~~~iPilGIC-----------lGhQ--~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~  321 (396)
                      +....+.++|+++=-           +|.+  -++..-|.-+.|+-.|.+-.++|+......+..
T Consensus       232 ~~~a~~~kiPli~sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG~~p~dip~~~~~~~~~~  296 (322)
T COG2984         232 LQVANKAKIPLIASDTSSVKEGALAALGVDYKDLGKQTGEMVVKILKGKKPKDIPVSVAAGFKLV  296 (322)
T ss_pred             HHHHHHHCCCEECCCHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
T ss_conf             99988708973547778876686036606799988999999999976999555685114664178


No 460
>KOG1252 consensus
Probab=20.29  E-value=45  Score=14.16  Aligned_cols=60  Identities=20%  Similarity=0.461  Sum_probs=28.4

Q ss_pred             HHHHHHCCCCEEEECCC---C-------HHHHHHCCCCEEEEC--CCCCCCCCCCCCCHHHHHHHCCCCCCE
Q ss_conf             22222024541330465---7-------446441357889985--888884101121101222102578634
Q gi|254780420|r  221 RVLSSLGCRITIVGAET---S-------YKDIMSLQPDGVLLS--NGPGDPAVTSVYSSPIICKLVDSGMPM  280 (396)
Q Consensus       221 r~L~~~g~~v~Vvp~~~---~-------~~~i~~~~pdgi~lS--nGPGdP~~~~~~~~~~~~~~~~~~iPi  280 (396)
                      ..|+.+|.+|+..|...   .       ++++++.-|++++|-  .-||||..-.....+.+.+-+.+++-|
T Consensus       144 ~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi  215 (362)
T KOG1252         144 ILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDI  215 (362)
T ss_pred             HHHHHCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf             999971887995686872477188999999999868873878874288885301256428999982699778


No 461
>pfam06520 consensus
Probab=20.22  E-value=57  Score=13.47  Aligned_cols=70  Identities=11%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCH
Q ss_conf             248888985378888760141614256173216897368-4588234204653332102366640465443455241798
Q gi|254780420|r   33 GSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGN-VGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHF  111 (396)
Q Consensus        33 ~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGN-yGvn~~d~ES~~~~~~~~~~g~Iv~~~~~~~Sn~rs~~sL  111 (396)
                      ..-.|.++|+++.++=-+++-+-+=..      |-|+|- ++.|.++              .+|-|... |   -....|
T Consensus         8 ~~q~GDIIFq~~~s~~~~aI~~AT~S~------~SHvGIIv~~~g~~--------------~~V~EA~~-p---V~~TpL   63 (186)
T pfam06520         8 QYETGDIIFQCIGSAQFKAISIATRCW------YNHVGIIIGHNGKD--------------YLVAEAVV-P---VKITTL   63 (186)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHCCC------CCCEEEEEEECCCE--------------EEEEEECC-C---EEEEEH
T ss_conf             676678999988960879999985898------76248999877966--------------89998238-6---434279


Q ss_pred             HHHHHH--CCCCEECCC
Q ss_conf             999974--278321125
Q gi|254780420|r  112 DAWLKS--CGIIGLSGI  126 (396)
Q Consensus       112 ~~wL~~--~~IpgI~GI  126 (396)
                      ++|+++  ++--.+.-+
T Consensus        64 ~~fi~Rg~~~~~~V~RL   80 (186)
T pfam06520        64 STFISRGKNQRYVIKRL   80 (186)
T ss_pred             HHHHHCCCCCCEEEEEE
T ss_conf             99985387884799980


No 462
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component; InterPro: IPR011296   This entry represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system . Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr) . The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes described by the IIB component and the IIC component (IPR004719 from INTERPRO), respectively. In Escherichia coli, Bacillus subtilis and Pseudomonas fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems , or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters , , .; GO: 0015574 trehalose transmembrane transporter activity, 0015771 trehalose transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=20.19  E-value=25  Score=15.93  Aligned_cols=34  Identities=35%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             CCCCEEEEECHH-----HHHHHH-CCCCCCCCCCCCCCCCCCCEE
Q ss_conf             786347861005-----887875-285446677675210112347
Q gi|254780420|r  276 SGMPMFGICLGH-----QLLGLA-LGAQTVKMYQGHHGVNHPVKN  314 (396)
Q Consensus       276 ~~iPilGIClGh-----Q~l~~a-~G~~~~kl~~GhrG~N~Pv~~  314 (396)
                      +.-||||||||-     |||.-. +|.+.-.++     .|-||=|
T Consensus       198 G~~~iLGIVLGl~LVhPqLlNAy~~g~~~~~i~-----g~iPvWd  237 (489)
T TIGR01992       198 GGSQILGIVLGLMLVHPQLLNAYAVGTALAEIK-----GNIPVWD  237 (489)
T ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-----CCCCCEE
T ss_conf             787136777767740776875888743202567-----8876120


No 463
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=20.16  E-value=61  Score=13.25  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHCCCCEECCCC-----------------HHHHHHHHHHCCCCCE
Q ss_conf             417989999742783211257-----------------6899999985398423
Q gi|254780420|r  107 ANMHFDAWLKSCGIIGLSGID-----------------TRALTVWIRDYGVSNS  143 (396)
Q Consensus       107 s~~sL~~wL~~~~IpgI~GID-----------------TRaLTk~IRe~G~~~a  143 (396)
                      .-..|-+||...+.|-+.|+-                 -|.|-++|-+.|+.+-
T Consensus       127 Na~~F~~~L~~~~~p~L~~l~faVfGLGDssY~~Fc~~gk~ld~rL~~LGA~rl  180 (599)
T PRK10953        127 EAVALHKFLFSKKAPKLENTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGGERL  180 (599)
T ss_pred             CHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             299999998608786568964899706875489999999999999997699723


No 464
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=20.10  E-value=36  Score=14.84  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=14.5

Q ss_pred             EEEEEECC-CCCHHHHHHHHHCCCCEEE
Q ss_conf             49999679-6410232222202454133
Q gi|254780420|r  207 HVVCIDYG-IRSNLLRVLSSLGCRITIV  233 (396)
Q Consensus       207 kIvvIDfG-iK~nIlr~L~~~g~~v~Vv  233 (396)
                      +|.+|=+| +=..|.++|.+.|++|.++
T Consensus         3 ~Ig~IGlG~MG~~ma~~L~~~g~~v~v~   30 (163)
T pfam03446         3 KIGFIGLGVMGSPMALNLLKAGYTVTVY   30 (163)
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCEEEEE
T ss_conf             8999836798999999999779969999


No 465
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288    L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=20.01  E-value=33  Score=15.09  Aligned_cols=30  Identities=20%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEECCCCEEEECCCCCCCCCCCC--HHHHHHH
Q ss_conf             68679977898348788776700--1689999
Q gi|254780420|r  355 FRLIDQPVFSVQYHPESSPGPQD--SYYLFST  384 (396)
Q Consensus       355 i~~~~~~~~~vQfHPEa~PGP~D--~~~~F~~  384 (396)
                      +.-++-.-|.-.|||-.-=-|+|  ++=+|.+
T Consensus       269 Lvd~~G~Rf~~~~hp~GeLAPRDiVaRAI~~~  300 (546)
T TIGR00551       269 LVDRDGKRFMADVHPRGELAPRDIVARAIDEE  300 (546)
T ss_pred             EECCCCCEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             35588867026778888767404889999999


No 466
>PRK05568 flavodoxin; Provisional
Probab=20.00  E-value=61  Score=13.23  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=26.5

Q ss_pred             HHHHHHHHHCCCCEEEEC-CCCHHHHHHCCCCEEEE
Q ss_conf             023222220245413304-65744644135788998
Q gi|254780420|r  218 NLLRVLSSLGCRITIVGA-ETSYKDIMSLQPDGVLL  252 (396)
Q Consensus       218 nIlr~L~~~g~~v~Vvp~-~~~~~~i~~~~pdgi~l  252 (396)
                      .|..-|.+.|++|.++.. +++.++|+  +.|+|+|
T Consensus        21 ~Iaegl~~~Gv~V~~~~~~~~~~~di~--~~d~i~~   54 (142)
T PRK05568         21 LIAEGAKENGLEVKLLNVSEASVDDVE--NADVVAL   54 (142)
T ss_pred             HHHHHHHHCCCEEEEEEECCCCHHHHH--HCCEEEE
T ss_conf             999999866983999980049988997--3996899


Done!