PSIBLAST alignment of GI: 254780420 and protein with PDB id: 1jdb
>gi|3318818|pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382
>gi|3318822|pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382
>gi|3318826|pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382
>gi|3318830|pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382
>gi|4929936|pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp Length = 382
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 178/385 (46%), Positives = 236/385 (61%), Gaps = 8/385 (2%)
Query: 12 PTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGN 71
+A+LVL DG+ G GATGS E+ FNTS+TGYQEILTDPSY QIV T+PHIGN
Sbjct: 3 KSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGN 62
Query: 72 VGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRAL 131
VG N D ES + A GLVI+ SN+R ++LK I+ ++ IDTR L
Sbjct: 63 VGTNDADEES----SQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKL 118
Query: 132 TVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWK 191
T +R+ G N I + D E+A+ + GL G +LAK VT ++ W++ W
Sbjct: 119 TRLLREKGAQNGCIIAGDNP--DAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWT 176
Query: 192 WGEETSFLKSSDA-KYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGV 250
K D +HVV D+G + N+LR+L GCR+TIV A+TS +D++ + PDG+
Sbjct: 177 LTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGI 236
Query: 251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNH 310
LSNGPGDPA Y+ I K +++ +P+FGICLGHQLL LA GA+TVKM GHHG NH
Sbjct: 237 FLSNGPGDPAPC-DYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNH 295
Query: 311 PVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
PVK++ V I + NHGFA+D ++LPA L TH SLFD + G D+P FS Q HPE
Sbjct: 296 PVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPE 355
Query: 371 SSPGPQDSYYLFSTFIDFMHKRKTM 395
+SPGP D+ LF FI+ + + +
Sbjct: 356 ASPGPHDAAPLFDHFIELIEQYRKT 380