RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase
small subunit [Candidatus Liberibacter asiaticus str. psy62]
(396 letters)
>gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 551 bits (1424), Expect = e-158
Identities = 195/379 (51%), Positives = 245/379 (64%), Gaps = 20/379 (5%)
Query: 11 KPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIG 70
A LVL DG+V EG GA G E+ FNTS+TGYQEILTDPSY GQIV FT+P IG
Sbjct: 2 MMKAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIG 61
Query: 71 NVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRA 130
N GVN EDFES A GL+++ PSN+R+ M D +LK GI G+SGIDTRA
Sbjct: 62 NYGVNREDFESDRPH----AKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRA 117
Query: 131 LTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIW 190
LT +R+ G VIA FD E+L E+A+ + GL G +L K V+ + W
Sbjct: 118 LTRKLREKGAMKGVIAT---EDFDAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPGP-- 172
Query: 191 KWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGV 250
+ KY VV ID+G++ N+LR L+ GCR+T+V A T+ ++I++L PDGV
Sbjct: 173 ----------GGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGV 222
Query: 251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNH 310
LSNGPGDPA Y+ +I +L++ +P+FGICLGHQLL LALGA+T KM GH G NH
Sbjct: 223 FLSNGPGDPAAL-DYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANH 281
Query: 311 PVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
PVK++ G VEI S NHGFA+D SLPA LE TH++L D + G R D P FSVQYHPE
Sbjct: 282 PVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPE 341
Query: 371 SSPGPQDSYYLFSTFIDFM 389
+SPGP DS YLF F++ M
Sbjct: 342 ASPGPHDSAYLFDEFVELM 360
>gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
subunit. This model represents the whole of the small
chain of the glutamine-dependent form (EC 6.3.5.5) of
carbamoyl phosphate synthase, CPSase II. The C-terminal
domain has glutamine amidotransferase activity. Note
that the sequence from the mammalian urea cycle form has
lost the active site Cys, resulting in an
ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
of pyrimidine biosynthesis, arginine biosynthesis, and
the urea cycle may be encoded by one or by several
genes, depending on the species.
Length = 358
Score = 432 bits (1113), Expect = e-122
Identities = 178/379 (46%), Positives = 226/379 (59%), Gaps = 22/379 (5%)
Query: 14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73
A LVL DG+V G GA G++ E+ FNT +TGYQEILTDPSY GQIV FT+P IGN G
Sbjct: 1 AYLVLEDGTVFRGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYG 60
Query: 74 VNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTV 133
VN ED ES GLV++ SN+RA D +LK GI G+ G+DTRAL
Sbjct: 61 VNDEDAESKGIH----VSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVK 116
Query: 134 WIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWG 193
IR+ G VI+ + E+L ++A + G L V+ + + WG
Sbjct: 117 KIREKGTMKGVISTED---SNDEELVQKASVSPDIDGINLVAEVSTK-------EPYTWG 166
Query: 194 EETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLS 253
+ K K VV ID+G++ N+LR L GC +T+V +T ++I PDG+ LS
Sbjct: 167 Q-----KRGGKKKRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLS 221
Query: 254 NGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313
NGPGDPA I + + +P+FGICLGHQLL LA GA+T KM GH G NHPVK
Sbjct: 222 NGPGDPAAVEPAIETI--RKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVK 279
Query: 314 NISNGTVEIVSMNHGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESS 372
++ G VEI S NHG+A+D SLPAG LE TH++L D + G R D PVFSVQYHPE+S
Sbjct: 280 DLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEAS 339
Query: 373 PGPQDSYYLFSTFIDFMHK 391
PGP D+ YLF FID + K
Sbjct: 340 PGPHDTEYLFDEFIDLIKK 358
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 354
Score = 369 bits (949), Expect = e-103
Identities = 154/382 (40%), Positives = 211/382 (55%), Gaps = 32/382 (8%)
Query: 14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73
A L+L DG+V EG GA + EI FNT +TGYQE+LTDPSY GQIV FT+P IGN G
Sbjct: 3 AYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYG 62
Query: 74 VNSEDFESISRKNFKGAVGLVIKAEI-TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132
+N++D+ES + V VI E+ E S+YRA D +LK I G+SG+DTRAL
Sbjct: 63 INADDYESK-----QPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALV 117
Query: 133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKW 192
IR+ G + I D + + + V+
Sbjct: 118 KHIREKGTMKASITTTDDAHAFDQIKA-------LVLPKNVVAQVSTK------------ 158
Query: 193 GEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL 252
E + HV ID+G + ++LR LS GC++T++ +TS ++I +L PDG++L
Sbjct: 159 --EPYTYGNGG--KHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVL 214
Query: 253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV 312
SNGPGDP Y I K + S P+ GICLGHQL+ LALGA T K+ GH G NHPV
Sbjct: 215 SNGPGDPKELQPYLPEI--KKLISSYPILGICLGHQLIALALGADTEKLPFGHRGANHPV 272
Query: 313 KNISNGTVEIVSMNHGFAIDASSL-PAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
+++ G V + S NHG+ +D SL L ++ D S G R +PV SVQ+HPE+
Sbjct: 273 IDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEA 332
Query: 372 SPGPQDSYYLFSTFIDFMHKRK 393
PGP D+ Y+F F++ M K +
Sbjct: 333 HPGPHDAEYIFDEFLEMMEKAR 354
>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase
(glutamine-hydrolyzing).
Length = 415
Score = 304 bits (779), Expect = 4e-83
Identities = 168/375 (44%), Positives = 228/375 (60%), Gaps = 16/375 (4%)
Query: 6 PWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFT 65
PW K A LVL DGSV + GA G+ E+ FNTSLTGYQEILTDPSY GQ V T
Sbjct: 51 PW--KTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMT 108
Query: 66 FPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSG 125
PHIGN GVN +D ES R+ F GLVI++ SN+R +L I+G+
Sbjct: 109 NPHIGNTGVNFDDEES--RQCF--LAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYD 164
Query: 126 IDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDW 185
+DTRA+T +R+ G V++ D + D E+L + +++W + G +L V+ +W
Sbjct: 165 VDTRAITRRLREDGSLIGVLSTE-DSKTD-EELLKMSRSWD-IVGIDLISGVSCKSPYEW 221
Query: 186 SEKIWKWGEETSFLKSSDAK--YHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIM 243
+K E F +S YHV+ D+GI+ N+LR L+S GC+IT+V + + +
Sbjct: 222 VDKT---NPEWDFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEAL 278
Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303
++PDGVL SNGPGDP+ Y+ + +L+ +P+FGIC+GHQLLG ALG +T KM
Sbjct: 279 KMKPDGVLFSNGPGDPSAVP-YAVETVKELLGK-VPVFGICMGHQLLGQALGGKTFKMKF 336
Query: 304 GHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVF 363
GHHG NHPV+N G VEI + NH +A+D +SLP G+E TH++L D S G V
Sbjct: 337 GHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVM 396
Query: 364 SVQYHPESSPGPQDS 378
S+QYHPE+SPGP DS
Sbjct: 397 SLQYHPEASPGPHDS 411
>gnl|CDD|180190 PRK05670, PRK05670, anthranilate synthase component II;
Provisional.
Length = 189
Score = 80.6 bits (200), Expect = 7e-16
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ L LG + + E + ++I +L PD ++LS GPG PA S + +
Sbjct: 14 NLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPA--EAGISLELIREFAG 71
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV--------KNISNGTVEIVSMNHG 328
+P+ G+CLGHQ +G A G + V+ + HG P+ + N V+ H
Sbjct: 72 KVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNPFT--VTRYHS 129
Query: 329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
+D SLP LE T + D G R + P++ VQ+HPES
Sbjct: 130 LVVDRESLPDCLEVTAWT-DDGEIMGVRHKELPIYGVQFHPES 171
>gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 73.6 bits (181), Expect = 9e-14
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 218 NLLRVLSSLGC-RITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVD 275
N+ + + LG I +V E + ++I +L P +++S GPG P + S +I
Sbjct: 14 NIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI-SVEVIRHFSG 72
Query: 276 SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN------HGF 329
+P+ G+CLGHQ +G A G + V + HG P+ + G + H
Sbjct: 73 K-VPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSL 131
Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
++ +SLP LE T S D G R + P+F VQ+HPES
Sbjct: 132 VVEEASLPECLEVTAKSD-DGEIMGIRHKEHPIFGVQFHPES 172
>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
Provisional.
Length = 191
Score = 72.2 bits (177), Expect = 2e-13
Identities = 52/164 (31%), Positives = 70/164 (42%), Gaps = 12/164 (7%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL + LG + + E DI L P +++S GP P + S +I D
Sbjct: 14 NLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI-SLAVIRHFADK 72
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
+P+ G+CLGHQ LG A GA+ V+ Q HG + + G V+ H
Sbjct: 73 -LPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLV 131
Query: 331 IDASSLPAGLEETHISLFDSSN---CGFRLIDQPVFSVQYHPES 371
I A SLP E T S G R P+ VQ+HPES
Sbjct: 132 IAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPES 175
>gnl|CDD|161933 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
synthase or aminodeoxychorismate synthase. This model
describes the glutamine amidotransferase domain or
peptide of the tryptophan-biosynthetic pathway enzyme
anthranilate synthase or of the folate biosynthetic
pathway enzyme para-aminobenzoate synthase. In at least
one case, a single polypeptide from Bacillus subtilis
was shown to have both functions. This model covers a
subset of the sequences described by the pfam model
GATase.
Length = 188
Score = 71.0 bits (174), Expect = 5e-13
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 9/161 (5%)
Query: 218 NLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ LG + + ++ ++I +L P +++S GP P + I +
Sbjct: 14 NLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAI--RHFAG 71
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
+P+ G+CLGHQ +G A G V+ HG +++ G + H
Sbjct: 72 KLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNPLTATRYHSLV 131
Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
++ +LP T + R D P+ VQ+HPES
Sbjct: 132 VEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPES 172
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. separate polypeptide
chains in most of the Archaea. This N-terminal region
would be the smaller subunit.
Length = 188
Score = 69.3 bits (170), Expect = 2e-12
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265
++ +D+G + L R L LG +V T ++I P G++LS GP SVY
Sbjct: 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPS-----SVY 55
Query: 266 S--SP-IICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG------VNHPV--KN 314
+ +P K+ + G+P+ GIC G QL+ LG + + + +G ++ +
Sbjct: 56 AENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRG 115
Query: 315 ISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
+ + V M+HG + LP G + S + ++P++ VQ+HPE
Sbjct: 116 LPD--ESTVWMSHGDKVKE--LPEGFKVLATSD-NCPVAAMAHEEKPIYGVQFHPE 166
>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
Provisional.
Length = 214
Score = 69.3 bits (170), Expect = 2e-12
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307
DGVLLS GPG P S ++ +G P+ G+CLGHQ +G+A GA + + HG
Sbjct: 48 DGVLLSPGPGTPERAGA-SIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG 106
Query: 308 VNHPVKNISNGTVE------IVSMNHGFAIDASSLPAGLEETHISLFDSSNC-GFRLIDQ 360
V + G + + H I +LPA LE T + DS R +
Sbjct: 107 KTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTART--DSGVIMAVRHREL 164
Query: 361 PVFSVQYHPES 371
P+ VQ+HPES
Sbjct: 165 PIHGVQFHPES 175
>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II;
Provisional.
Length = 193
Score = 66.4 bits (162), Expect = 1e-11
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL + LG ++ +V E I +L P +++S GP P + I +
Sbjct: 14 NLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAI--EHFAG 71
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
+P+ G+CLGHQ + G Q V+ Q HG P+++ + V+ H
Sbjct: 72 KLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLV 131
Query: 331 IDASSLPAGLEETHISLFDSSN----CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI 386
+ +LP E T + + + GF+ P+ +VQ+HPES Q + L + F+
Sbjct: 132 VKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQ-GHQLLANFL 190
>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II;
Provisional.
Length = 187
Score = 64.2 bits (156), Expect = 6e-11
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL + LG + + + DI +L+P +++S GP P + S + +
Sbjct: 14 NLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI--SLDVIRHYAG 71
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
+P+ G+CLGHQ + A G + V+ + HG P+ + G V+ H
Sbjct: 72 RLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLV 131
Query: 331 IDASSLPAGLEETHISLFDSSNC-GFRLIDQPVFSVQYHPES 371
++ SLPA E T S ++ G R + VQ+HPES
Sbjct: 132 VEPDSLPACFEVTAWS--ETREIMGIRHRQWDLEGVQFHPES 171
>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 61.2 bits (150), Expect = 5e-10
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 27/153 (17%)
Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLV-DSGMPMFGICLGHQ 288
IV + S ++I + P G++LS GP SVY +P + + G+P+ GIC G Q
Sbjct: 32 IVPYDISAEEIRAFNPKGIILSGGP-----ASVYEEGAPRADPEIFELGVPVLGICYGMQ 86
Query: 289 LLGLALGAQTVKMYQGHHG--------VNHP---VKNISNGTVEIVSMNHGFAIDASSLP 337
L+ LG + + V++ K + + V M+HG + LP
Sbjct: 87 LMAHQLGGKVER---AGKREYGRAELEVDNDSPLFKGLPEE--QDVWMSHGDKVTE--LP 139
Query: 338 AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
G + + + ++ + VQ+HPE
Sbjct: 140 EGFKVIASTE-NCPIAAIANEERKFYGVQFHPE 171
>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 59.2 bits (144), Expect = 2e-09
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303
+ PD V+LS GPG P+ ++ I + +P+FG+CLG Q + A G + ++
Sbjct: 567 RVNPDLVVLSPGPGRPSDFDCKAT--IDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY 624
Query: 304 GHHGVNHPVKNISNGTV------EI-VSMNHGFAIDASSLPAGLEETHISLFDSSNCGFR 356
HG ++ G + E V H D +LP L T + D
Sbjct: 625 PMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAETE-DGVIMAIE 683
Query: 357 LIDQPVFSVQYHPES 371
PV +VQ+HPES
Sbjct: 684 HKTLPVAAVQFHPES 698
>gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyse
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 58.8 bits (143), Expect = 2e-09
Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 58/186 (31%)
Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGD---------PAVTSVYSSP--------IICKLV 274
I+ + ++ L DG+LL+ G + P+ + Y P +I +
Sbjct: 45 ILEDPEDLEALLDLV-DGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAAL 103
Query: 275 DSGMPMFGICLGHQLLGLALG---AQTVKMYQGHHGVNHPVKNISNGTVEI--------- 322
+ G P+ GIC G QLL +ALG Q + + G+ +H + + +
Sbjct: 104 ERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLA 163
Query: 323 ---------VSMNHGFAIDASSLPAGLE-ETH--------ISLFDSSNCGFRLIDQPVFS 364
V+ H AI L GL E I ++ V
Sbjct: 164 RLLGAEEILVNSLHHQAIKR--LAPGLRVEATAPDGTIEAIESPNA--------PYFVLG 213
Query: 365 VQYHPE 370
VQ+HPE
Sbjct: 214 VQWHPE 219
>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II; Validated.
Length = 195
Score = 57.9 bits (140), Expect = 4e-09
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ L LG + + E + DI +++PD +++S GP P + I +
Sbjct: 14 NLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVI--RYFAG 71
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVE--IVSMNHGFA 330
+P+FG+CLGHQ + G + V+ + HG ++H K I + + H
Sbjct: 72 KIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLI 131
Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES---SPGPQDSYYLFSTFID 387
+ +LP LE T + R P+ VQ+HPES S G + L FI
Sbjct: 132 VKKETLPDCLEVTS-WTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKE----LLQNFIR 186
Query: 388 FMHKRKTMC 396
T C
Sbjct: 187 KYSPSVTSC 195
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate.
Length = 717
Score = 58.0 bits (140), Expect = 5e-09
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 12/174 (6%)
Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
++ +D+ L L G +T + + +PD V+LS GPG PA V
Sbjct: 518 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV 577
Query: 265 YSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV---- 320
+ I + G+P+FG+CLG Q + A G + + HG ++ + +
Sbjct: 578 AGT--IDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGL 635
Query: 321 ---EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
V H LPA L T S D P+ +VQ+HPES
Sbjct: 636 PERLTVGRYHSLFARRDRLPAELTVTAESA-DGLIMAIEHRRLPLAAVQFHPES 688
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 57.2 bits (139), Expect = 7e-09
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%)
Query: 221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPM 280
R L LG I+ T ++I + DG++LS GP + + P L + +P+
Sbjct: 17 RTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP---DIERAGNCPEY--LKELDVPI 70
Query: 281 FGICLGHQLLGLALGAQTVKMYQGHHGV--------NHPVKNISNGTV-------EIVSM 325
GICLGHQL+ A G + + G + + + +K + E+ +
Sbjct: 71 LGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKEL 130
Query: 326 NHGFAIDASSLPAGLEETHISLFDSSNCG---FRLIDQPVFSVQYHPE 370
GF I A S C + ++P++ VQ+HPE
Sbjct: 131 PDGFEILAR---------------SDICEVEAMKHKEKPIYGVQFHPE 163
>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
Length = 222
Score = 55.6 bits (134), Expect = 2e-08
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL + + LGC + E + +++ P GVL+S GPG P + + S +
Sbjct: 33 NLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI--SLQTVLELGP 90
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQG-HHGVNHPVKNISNGTVEIVS---------MN 326
+P+FG+C+G Q +G A G + V+ G HG + PV G + S
Sbjct: 91 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRY 150
Query: 327 HGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP-VFSVQYHPES 371
H I+ + P+ E D R + VQ+HPES
Sbjct: 151 HSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPES 196
>gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 54.5 bits (131), Expect = 5e-08
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 204 AKYHVVCID-YGIRS-NLLRVL---SSLGCRITIVGAETSYKDIMSLQP--DGVLLSNGP 256
+ HV+ ID Y + N++R+L + + +T V ++T ++ L P D +++ GP
Sbjct: 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGP 63
Query: 257 GDPAVTSVYSSPI--ICKLVDSGM-PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313
G+P I + +L + P+ GICLG Q L LA GA ++ HG + +
Sbjct: 64 GNPNNAQ-DMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMH 122
Query: 314 ----NISNGTVEIVSMNHGFAIDASSLPAGLE--ETHISLF----DSSNC--GFRLIDQP 361
I G + S + SL A E +T + L + + +P
Sbjct: 123 TNDAAIFCGLFSVKSTRY------HSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKP 176
Query: 362 VFSVQYHPESSPGPQDSYYLFSTFID 387
F VQYHPES S L S F+
Sbjct: 177 WFGVQYHPESCCSELGSGKLVSNFLK 202
>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 51.6 bits (124), Expect = 3e-07
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGP------GDP 259
V+ +DYG + L R + LG ++ S I SL P V+LS GP G P
Sbjct: 13 VLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAP 72
Query: 260 AVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK------ 313
V + C+ + G+P+ GIC G QL+ LG + + +G ++
Sbjct: 73 TVPEGFFD--YCR--ERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYG-RMEIRVVCGSQ 127
Query: 314 ---NISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP---VFSVQY 367
++ +G + V M+HG +A LP G E + S I+ ++ +QY
Sbjct: 128 LFGDLPSGETQTVWMSHG--DEAVKLPEGFE----VVAKSVQGAVVAIENRERRIYGLQY 181
Query: 368 HPESSPGPQ 376
HPE + P+
Sbjct: 182 HPEVTHSPK 190
>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
Length = 237
Score = 50.3 bits (121), Expect = 7e-07
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 248 DGVLLSNGPGDPA-VT-----SVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQ 297
GV+++ G A VT S ++ + + +GMP+ GIC GHQLL ALG +
Sbjct: 56 AGVIIT---GSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGE 108
>gnl|CDD|168720 PRK06895, PRK06895, putative anthranilate synthase component II;
Provisional.
Length = 190
Score = 47.8 bits (114), Expect = 4e-06
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 280 MFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG--------TVEIVSMNHGFAI 331
+ G+CLGHQ L G + + HG P+K SN I + H +A+
Sbjct: 75 ILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEEFNI-GLYHSWAV 133
Query: 332 DASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
+ P LE T + ++ + P++ VQ+HPES
Sbjct: 134 SEENFPTPLEITAVC-DENVVMAMQHKTLPIYGVQFHPES 172
>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
Provisional.
Length = 208
Score = 46.0 bits (109), Expect = 2e-05
Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 34/198 (17%)
Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
HVV ID NL+ + G + T+ ++I++ PD + LS GPG P
Sbjct: 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPR---- 58
Query: 265 YSSPIICKLVDSGM---PMFGICLGHQLLGLALGAQ----------TVKMYQGHHGVNHP 311
+ + L+D + P+ GICLG Q L G + T M GV P
Sbjct: 59 -DAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGTTDNMILTDAGVQSP 117
Query: 312 V---------KNISNGTVEIVSMNHGFAIDASSLPAGLEE--THISLFDSSNCGFRLIDQ 360
V + V + ++ P G+E T S D
Sbjct: 118 VFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDG 177
Query: 361 PVFSVQYHPES--SP-GP 375
+Q+HPES SP GP
Sbjct: 178 KAIGLQFHPESVLSPTGP 195
>gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 45.2 bits (107), Expect = 3e-05
Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 12/147 (8%)
Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307
D +++S GPG P + + L +P+ G+CLGHQ LG GA+ V + HG
Sbjct: 133 DNIVISPGPGSPTCPADIGICLRLLLECRDIPILGVCLGHQALGYVHGARIVHAPEPVHG 192
Query: 308 ----VNHP----VKNISNGTVE--IVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRL 357
+ H +I +G V H IDA SLP E I+ SS+ L
Sbjct: 193 RLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPK--ELVPIAWTSSSDTLSFL 250
Query: 358 IDQPVFSVQYHPESSPGPQDSYYLFST 384
Q V ES G S FS+
Sbjct: 251 ESQKSGLVPDAYESQIGQSGSSDPFSS 277
>gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 44.7 bits (107), Expect = 4e-05
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 211 IDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPAVTS 263
IDYG +RS + + L LG I ++I L DGV+L PG A+ +
Sbjct: 5 IDYGMGNLRS-VEKALERLGAEAVITS---DPEEI--LAADGVIL---PGVGAFPDAMAN 55
Query: 264 VYSS---PIICKLVDSGMPMFGICLGHQLL 290
+ +I + V SG P+ GICLG QLL
Sbjct: 56 LRERGLDEVIKEAVASGKPLLGICLGMQLL 85
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 44.6 bits (105), Expect = 4e-05
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 218 NLLRVLSSLGCRITI----VGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKL 273
NL L S G + I + A+T + + ++ ++LS GPG P+ P +
Sbjct: 16 NLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCM--PELLTR 73
Query: 274 VDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVEIVSMNHGF 329
+ +P+ GICLGHQ + A G + + HG + H + + G + +
Sbjct: 74 LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYH 133
Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
++ S++PAGL T + F+ R V Q+HPES
Sbjct: 134 SLVGSNIPAGL--TINAHFNGMVMAVRHDADRVCGFQFHPES 173
>gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 42.5 bits (101), Expect = 2e-04
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 208 VVCIDYGIRSNLLRVLSSL---GCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
+V IDYG+ NL V +L G + I ++I+ DG++L PG A +
Sbjct: 3 IVIIDYGV-GNLRSVSKALERAGAEVVITS---DPEEILDA--DGIVL---PGVGAFGAA 53
Query: 265 YS--SP---IICKLVDSGMPMFGICLGHQLL 290
SP +I + SG P GICLG QLL
Sbjct: 54 MENLSPLRDVILEAARSGKPFLGICLGMQLL 84
>gnl|CDD|180812 PRK07053, PRK07053, glutamine amidotransferase; Provisional.
Length = 234
Score = 40.3 bits (95), Expect = 9e-04
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 29/115 (25%)
Query: 275 DSGMPMFGICLGHQLLGLALGAQTVKMYQGH-------------HGVNHPVKNISNGTVE 321
+G+P GICLG QL+ ALGA ++Y G G P++++ GT
Sbjct: 81 AAGLPTLGICLGAQLIARALGA---RVYPGGQKEIGWAPLTLTDAGRASPLRHLGAGTP- 136
Query: 322 IVSMNHGFAIDASSLPAG---LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP 373
V HG D LP G L T + F + V ++Q+HPE+
Sbjct: 137 -VLHWHG---DTFDLPEGATLLASTPA----CRHQAFAWGNH-VLALQFHPEARE 182
>gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional.
Length = 240
Score = 37.5 bits (87), Expect = 0.006
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMYQG 304
KL + G + G+C GHQLL L LG + + QG
Sbjct: 86 KLYERGDKLLGVCFGHQLLALLLGGKAERASQG 118
>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional.
Length = 235
Score = 36.9 bits (86), Expect = 0.009
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 255 GPGDPAVT----SVYSSP----IICKLVDSGMPMFGICLGHQLLGLALGAQ 297
GP P T + S +I + + +G + G+CLG QL+G ALGA+
Sbjct: 54 GPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAK 104
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 34.5 bits (80), Expect = 0.049
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 208 VVCIDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPA 260
+ IDYG +RS + L LG + +S + ++ D V+L PG A
Sbjct: 2 IAIIDYGAGNLRS-VANALKRLGVEAVV----SSDPEEIAGA-DKVIL---PGVGAFGQA 52
Query: 261 VTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290
+ S+ S + + V+ P+ GICLG QLL
Sbjct: 53 MRSLRESGLDEALKEHVEKKQPVLGICLGMQLL 85
>gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6.
Length = 196
Score = 33.8 bits (78), Expect = 0.087
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 208 VVCIDYGIRSNLLRVLSSLGCRITIVGAET----SYKDIMSLQPDGVLLSNGPGDPAVTS 263
+V IDYG+ NL V +L VGAE K+ D ++L PG A +
Sbjct: 1 IVIIDYGV-GNLGSVKRAL----KRVGAEPVVVKDSKEAE--LADKLIL---PGVGAFGA 50
Query: 264 VYS-------SPIICKLVDSGMPMFGICLGHQLLG 291
+ + +V G P+ GICLG QLL
Sbjct: 51 AMARLRENGLDLFVELVVRLGKPVLGICLGMQLLF 85
>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 32.1 bits (74), Expect = 0.29
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 26/98 (26%)
Query: 208 VVCIDYG---IRS---NLLRVLSSLGCRITIVGAETS-YKDIMSLQPDGVLLSNGPGDPA 260
V IDYG +RS L R G + + T+ + + D V+L PG A
Sbjct: 4 VAIIDYGSGNLRSAAKALERA--GAGADVVV----TADPDAVAA--ADRVVL---PGVGA 52
Query: 261 --------VTSVYSSPIICKLVDSGMPMFGICLGHQLL 290
+I ++ +G P GIC+G QLL
Sbjct: 53 FADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLL 90
>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 210
Score = 31.0 bits (70), Expect = 0.51
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 237 TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290
TS + + +L +G D A+ ++ S+ I K V+SG P+FGIC+G Q+L
Sbjct: 29 TSDPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQIL 85
>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
Length = 239
Score = 30.7 bits (70), Expect = 0.64
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 279 PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEI 322
P GICLG Q+L LGA+ H +G VEI
Sbjct: 88 PFLGICLGAQMLARHLGARV----APHP----------DGRVEI 117
>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 30.6 bits (70), Expect = 0.78
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 44 SLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSE------DFE 80
S+ G++E+ T+PS LG+I + P I V VN+ DFE
Sbjct: 115 SVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFE 157
>gnl|CDD|181035 PRK07567, PRK07567, glutamine amidotransferase; Provisional.
Length = 242
Score = 30.3 bits (69), Expect = 0.92
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 52/157 (33%)
Query: 248 DGVLLSNGPG---DPAVTSVYS----------SPIICKLVDSGMPMFGICLGHQLLGLAL 294
GV++ P DPA + S S ++ ++V P G C G LG
Sbjct: 53 SGVIVGGSPFNVSDPAES--KSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQ 110
Query: 295 GAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFA----------IDA--------SSL 336
G + Y PV G V + + G A A S+L
Sbjct: 111 GGVVDRTY------GEPV-----GAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSAL 159
Query: 337 PAGLEETHISLFDSSNC---GFRLIDQPVFSVQYHPE 370
P G + L S C FR + + V++ Q+HPE
Sbjct: 160 PPG----AVLLATSPTCPVQMFR-VGENVYATQFHPE 191
>gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 158
Score = 29.5 bits (67), Expect = 1.4
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 272 KLVDSGMPMFGICLGHQLLGLAL-----GAQTVKMYQG-----HHGVNHPVKNISNGTVE 321
+ ++G P+ GIC G+Q+LG + G + +G V K + E
Sbjct: 37 EHAEAGGPILGICGGYQMLGETIIDGIEGTAGGERVEGLGLLDIETVFQKEKTLGYVEGE 96
Query: 322 IVSMNHGFAI 331
+ N G +
Sbjct: 97 SLLFNKGEEV 106
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 29.7 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 270 ICKLVDSGMPMFGICLGHQLL 290
+ + + + P GICLG QLL
Sbjct: 72 LREYIQNDRPFLGICLGLQLL 92
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 29.4 bits (67), Expect = 1.7
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 279 PMFGICLGHQLLG 291
P+ GICLG QLLG
Sbjct: 72 PVLGICLGMQLLG 84
>gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This
family is one of several subfamilies within the scope of
pfam model pfam00873.
Length = 1044
Score = 29.3 bits (66), Expect = 1.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 42 NTSLTGYQEILTDPSYLGQIV--------NFTFPHIGNVGVNSEDFESISRKNFKGAVGL 93
N ++ Q L P I+ + V + E++ +R N K A GL
Sbjct: 231 NATIIA-QTRLQTPEQFEDILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGL 289
Query: 94 VIK 96
IK
Sbjct: 290 AIK 292
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1
component. The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase.
Length = 929
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 48 YQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92
Y++ LTDP + TF + G + F S +R F+
Sbjct: 14 YEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAK 58
>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 28.9 bits (66), Expect = 2.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 270 ICKLVDSGMPMFGICLGHQLLG 291
I G P+ GIC G+Q+LG
Sbjct: 318 IRAHARRGGPVLGICGGYQMLG 339
>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional.
Length = 210
Score = 28.8 bits (64), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLK 116
E F SI+R ++GA G ++ +IT + H +WL+
Sbjct: 66 ESFRSITRSYYRGAAGALLVYDITRRETFN---HLASWLE 102
>gnl|CDD|179238 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 28.2 bits (63), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 270 ICKLVDSGMPMFGICLGHQLLGLALGA 296
I + +D G P+ GIC G Q+L + LG
Sbjct: 82 IEEFIDEGYPIIGICNGFQVL-VELGL 107
>gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 28.1 bits (64), Expect = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 277 GMPMFGICLGHQL 289
+P GICLG QL
Sbjct: 372 NIPFLGICLGMQL 384
>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
family. This small group of proteins is a member of the
IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
Several members of this family from thermophiles (and
from Dehalococcoides ethenogenes) are now known to act
as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
these cases, the enzyme acts after MPG synthase to make
the compatible solute mannosylglycerate. We propose that
other mesophilic members of this family do not act as
mannosyl-3-phosphoglycerate phosphatase. A member of
this family is found in Escherichia coli, which appears
to lack MPG synthase. Mannosylglycerate is imported in
E. coli by phosphoenolpyruvate-dependent transporter
(PubMed:14645248), but it appears the phosphorylation is
not on the glycerate moiety, that the phosphorylated
import is degraded by an alpha-mannosidase from an
adjacent gene, and that E. coli would have no pathway to
obtain MPG.
Length = 256
Score = 28.1 bits (63), Expect = 4.2
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 159 KERAKNWSGLKG--AELAKHVTVSQRRDWSEKIWKWGEE--TSFLKSSDAK--------- 205
+GL A LA QRR++SE I W EE F ++
Sbjct: 114 DAEIAELTGLSRELAALA------QRREYSETIL-WSEERRERFTEALVELGLEVTHGNR 166
Query: 206 -YHVVCI--DYGIRSNLLRVLSSL-GCRITIVGAETSYKDI-MSLQPDGVLLSNGPGDPA 260
YHV+ D G +N L+ + G I +VG S D+ + D ++ GP P
Sbjct: 167 FYHVLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPN 226
Query: 261 V 261
V
Sbjct: 227 V 227
>gnl|CDD|150429 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly
chaperone) family of proteins is found in bacteria,
archaea and eukaryotes. Proteins in this family are
typically between 247 and 307 amino acids in length.
These proteins function as a chaperone for the 26S
proteasome. The 26S proteasome mediates
ubiquitin-dependent proteolysis in eukaryotic cells. A
number of studies including very recent ones have
revealed that assembly of its 20S catalytic core
particle is an ordered process that involves several
conserved proteasome assembly chaperones (PACs). Two
heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
promote the assembly of rings composed of seven alpha
subunits.
Length = 177
Score = 28.0 bits (63), Expect = 4.3
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 25/97 (25%)
Query: 93 LVIKAEITEPSNYRANMHFDA---WLKSCG---IIGLSGIDTRALTVWIRDYGVSNS--V 144
LV++ EP R +A + G +I L G+ G + S +
Sbjct: 70 LVLQGRSPEP-PGRWYEFAEAILDLAEELGVSEVITLGGLPAGVPHTRPPVTGAATSPEL 128
Query: 145 IAHHPDG----------------QFDLEDLKERAKNW 165
I D + L++L+E A N
Sbjct: 129 IEELEDPKAALALLEALSKLLGLEVPLDELEEEADNI 165
>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This
family consists of several mid-1-related chloride
channels. mid-1-related chloride channel (MCLC) proteins
function as a chloride channel when incorporated in the
planar lipid bilayer.
Length = 577
Score = 27.8 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 171 AELAK----HVTVSQRRDWSEKIWKW 192
AELAK +++ DWSE I+ W
Sbjct: 262 AELAKLEDFDKVCAKKIDWSESIFDW 287
>gnl|CDD|165993 PLN02352, PLN02352, phospholipase D epsilon.
Length = 758
Score = 27.6 bits (61), Expect = 5.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAG 339
+G Q+ + G + V M +G H VN+P+ +G VE ++ G D + G
Sbjct: 693 IGEQMWEIYSGEEVVDM-EGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKG 746
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 27.4 bits (61), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 171 AELAKHVTVSQRRDWSEKIWKWGEE 195
L K+V R++W +KI +W +E
Sbjct: 330 KSLIKYVQYCDRKEWLDKINQWKKE 354
>gnl|CDD|162798 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
protein. Members of this protein family contain a
region of homology to the RimK family of
alpha-L-glutamate ligases (TIGR00768), various members
of which modify the Glu-Glu C-terminus of ribosomal
protein S6, or tetrahydromethanopterin, or a form of
coenzyme F420 derivative. Members of this family are
found so far in various Vibrio and Pseudomonas species
and some other gamma and beta Proteobacteria. The
function is unknown.
Length = 317
Score = 27.5 bits (61), Expect = 6.0
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 100 TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLK 159
T S+ +AN+H A GI +G RA VW N I HHPD DL L+
Sbjct: 177 TRASDGKANLHQGA--VGVGIDLATGKTIRA--VWF------NQPITHHPDTGKDLSGLQ 226
Query: 160 ERAKNWSGL 168
+W L
Sbjct: 227 --VPHWERL 233
>gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 27.4 bits (62), Expect = 7.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 267 SPI---ICKLVDSGMPMFGICLGHQLL---GLALGA 296
SPI + + + G P+ GIC G Q+L GL GA
Sbjct: 66 SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGA 101
>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase,
glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP)
is synthesized by the PdxA/PdxJ pathway in some species
(mostly within the gamma subdivision of the
proteobacteria) and by the Pdx1/Pdx2 pathway in most
other organisms. This family describes Pdx2, the
glutaminase subunit of the PLP synthase.
Length = 184
Score = 27.0 bits (60), Expect = 8.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 272 KLVDSGMPMFGICLGHQLL 290
+ SG+P+FG C G +L
Sbjct: 65 NFILSGLPVFGTCAGLIML 83
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase.
Length = 606
Score = 27.2 bits (60), Expect = 8.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 112 DAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKER---AKNWSGL 168
D W + C S I T ++ WI D N+V + +L DL E K+W G+
Sbjct: 233 DHWKELC-----SNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGI 287
>gnl|CDD|161825 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7).
Length = 525
Score = 26.9 bits (60), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 355 FRLIDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386
L D P F + Q+HPE + P + LF F+
Sbjct: 491 IELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,490,931
Number of extensions: 412534
Number of successful extensions: 876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 63
Length of query: 396
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 301
Effective length of database: 3,941,713
Effective search space: 1186455613
Effective search space used: 1186455613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)