RPSBLAST alignment of GI: 254780420 and protein with PDBid: 1a9x

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379
 Score =  376 bits (966), Expect = e-105
 Identities = 177/382 (46%), Positives = 236/382 (61%), Gaps = 8/382 (2%)

Query: 13  TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNV 72
           +A+LVL DG+   G   GATGS   E+ FNTS+TGYQEILTDPSY  QIV  T+PHIGNV
Sbjct: 3   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 62

Query: 73  GVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132
           G N  D ES    +   A GLVI+      SN+R      ++LK   I+ ++ IDTR LT
Sbjct: 63  GTNDADEES----SQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLT 118

Query: 133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWK- 191
             +R+ G  N  I        D     E+A+ + GL G +LAK VT ++   W++  W  
Sbjct: 119 RLLREKGAQNGCIIAGD--NPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTL 176

Query: 192 WGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVL 251
            G      K  +  +HVV  D+G + N+LR+L   GCR+TIV A+TS +D++ + PDG+ 
Sbjct: 177 TGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIF 236

Query: 252 LSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHP 311
           LSNGPGDPA    Y+   I K +++ +P+FGICLGHQLL LA GA+TVKM  GHHG NHP
Sbjct: 237 LSNGPGDPAPCD-YAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHP 295

Query: 312 VKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
           VK++    V I + NHGFA+D ++LPA L  TH SLFD +  G    D+P FS Q +PE+
Sbjct: 296 VKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEA 355

Query: 372 SPGPQDSYYLFSTFIDFMHKRK 393
           SPGP D+  LF  FI+ + + +
Sbjct: 356 SPGPHDAAPLFDHFIELIEQYR 377