BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase
small subunit [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ 60
           MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ
Sbjct: 1   MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ 60

Query: 61  IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI 120
           IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI
Sbjct: 61  IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI 120

Query: 121 IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS 180
           IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS
Sbjct: 121 IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS 180

Query: 181 QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK 240
           QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK
Sbjct: 181 QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK 240

Query: 241 DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK 300
           DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK
Sbjct: 241 DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK 300

Query: 301 MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ 360
           MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ
Sbjct: 301 MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ 360

Query: 361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC 396
           PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC
Sbjct: 361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC 396


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 45.4 bits (106), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 22/177 (12%)

Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265
           V+ ID+G +   L  R +        ++  + +        P  ++LS   G PA +   
Sbjct: 10  VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILS---GSPASSLDI 66

Query: 266 SSPIICK-LVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVN--HPVKNIS------ 316
            SP I K +++S +P+ GIC G Q++  +LG +T        G       KN S      
Sbjct: 67  DSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMW 126

Query: 317 -NGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ--PVFSVQYHPE 370
             G+ + V M+HG  ++   +P G E   I+  DS+   F + D+    ++VQ+HPE
Sbjct: 127 EKGSKQQVWMSHGDQVE--HIPEGFEV--IASSDSTPFAF-IADEKRKYYAVQFHPE 178


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 29.6 bits (65), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386
           I+ P F  VQYHPE    P D + LF +FI
Sbjct: 505 INHPWFIGVQYHPELKSRPLDPHPLFVSFI 534


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,067
Number of Sequences: 1233
Number of extensions: 11020
Number of successful extensions: 25
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 396
length of database: 328,796
effective HSP length: 76
effective length of query: 320
effective length of database: 235,088
effective search space: 75228160
effective search space used: 75228160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)