BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62] (396 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/396 (100%), Positives = 396/396 (100%) Query: 1 MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ 60 MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ Sbjct: 1 MTVTLPWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQ 60 Query: 61 IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI 120 IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI Sbjct: 61 IVNFTFPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGI 120 Query: 121 IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS 180 IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS Sbjct: 121 IGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVS 180 Query: 181 QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK 240 QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK Sbjct: 181 QRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYK 240 Query: 241 DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK 300 DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK Sbjct: 241 DIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVK 300 Query: 301 MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ 360 MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ Sbjct: 301 MYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ 360 Query: 361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC 396 PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC Sbjct: 361 PVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTMC 396 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 45.4 bits (106), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 22/177 (12%) Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265 V+ ID+G + L R + ++ + + P ++LS G PA + Sbjct: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILS---GSPASSLDI 66 Query: 266 SSPIICK-LVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVN--HPVKNIS------ 316 SP I K +++S +P+ GIC G Q++ +LG +T G KN S Sbjct: 67 DSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMW 126 Query: 317 -NGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ--PVFSVQYHPE 370 G+ + V M+HG ++ +P G E I+ DS+ F + D+ ++VQ+HPE Sbjct: 127 EKGSKQQVWMSHGDQVE--HIPEGFEV--IASSDSTPFAF-IADEKRKYYAVQFHPE 178 >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 29.6 bits (65), Expect = 0.087, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386 I+ P F VQYHPE P D + LF +FI Sbjct: 505 INHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,067 Number of Sequences: 1233 Number of extensions: 11020 Number of successful extensions: 25 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 3 length of query: 396 length of database: 328,796 effective HSP length: 76 effective length of query: 320 effective length of database: 235,088 effective search space: 75228160 effective search space used: 75228160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)