HHsearch alignment for GI: 254780421 and conserved domain: COG1729
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=97.98 E-value=0.00018 Score=46.01 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=87.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999998413876669999999731255-20699999999999951100577899999987312689578999999999
Q gi|254780421|r 56 NFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 56 ~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCHHHHHHHH
T ss_conf 999999999838788999999999970999755602499988999862461679999999998389999-8828999999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 9630269989999997531146
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEP 156 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~ 156 (218)
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999821779999999999987