HHsearch alignment for GI: 254780421 and conserved domain: COG3063
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.74 E-value=1.7e-06 Score=58.59 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-HH
Q ss_conf 99999999999999999841387666999999973125520699999999999951100577899999987312689-57
Q gi|254780421|r 46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP-LA 124 (218)
Q Consensus 46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~-~~ 124 (218)
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 22588999999999999997789999998899998849520--8899999999999077556799999998529886405
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 89999999999630269989999997531146-4235689999999999988998999999999983-558998999999
Q gi|254780421|r 125 VRYAATLQAASILVDTSSYEEISKILQKLSEP-SNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRS 202 (218)
Q Consensus 125 ~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra 202 (218)
T Consensus 106 LNN-----YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 106 LNN-----YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred HHH-----HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 521-----069997089868999999998718887775304544578886437704479999999883757876789987
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780421|r 203 QMIL 206 (218)
Q Consensus 203 ~~~l 206 (218)
T Consensus 181 ~~~~ 184 (250)
T COG3063 181 RLHY 184 (250)
T ss_pred HHHH
T ss_conf 9887