HHsearch alignment for GI: 254780421 and conserved domain: COG3063

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.74  E-value=1.7e-06  Score=58.59  Aligned_cols=154  Identities=17%  Similarity=0.187  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-HH
Q ss_conf             99999999999999999841387666999999973125520699999999999951100577899999987312689-57
Q gi|254780421|r   46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP-LA  124 (218)
Q Consensus        46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~-~~  124 (218)
T Consensus        28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             22588999999999999997789999998899998849520--8899999999999077556799999998529886405


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf             89999999999630269989999997531146-4235689999999999988998999999999983-558998999999
Q gi|254780421|r  125 VRYAATLQAASILVDTSSYEEISKILQKLSEP-SNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRS  202 (218)
Q Consensus       125 ~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra  202 (218)
T Consensus       106 LNN-----YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a  180 (250)
T COG3063         106 LNN-----YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA  180 (250)
T ss_pred             HHH-----HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             521-----069997089868999999998718887775304544578886437704479999999883757876789987


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780421|r  203 QMIL  206 (218)
Q Consensus       203 ~~~l  206 (218)
T Consensus       181 ~~~~  184 (250)
T COG3063         181 RLHY  184 (250)
T ss_pred             HHHH
T ss_conf             9887