HHsearch alignment for GI: 254780421 and conserved domain: COG4499
>COG4499 Predicted membrane protein [Function unknown].
Probab=97.14 E-value=0.018 Score=33.66 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99975199999999999999999999999999999999999999998413876669999999731255206999999999
Q gi|254780421|r 17 GKCCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIA 96 (218)
Q Consensus 17 ~~~~yk~ii~~~i~~i~~~~~~~~~~~~~q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA 96 (218)
T Consensus 216 k~~ifk~~giGliillvl~li~~~Y~~f~~~p~qeai----~~a~~aFL~~nY~qVittLe~y---dp~klPksv~Y~LA 288 (434)
T COG4499 216 KYTIFKYFGIGLIILLVLLLIYFTYYYFSNQPKQEAI----ITANTAFLKNNYDQVITTLENY---DPEKLPKSVQYILA 288 (434)
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHCCHHHHHHHCCCC---CHHHCCHHHHHHHH
T ss_conf 5111146888699999999999999999717268889----9889999853589886302348---91237688899998
Q ss_pred HHHHHCCHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99951100577899--9999873126895789999999999630269989999997531146423568999
Q gi|254780421|r 97 SILVAKGDTKNAAE--IFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFAN 165 (218)
Q Consensus 97 ~~~~~~g~~~~A~~--~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ 165 (218)
T Consensus 289 ~SYV~~e~L~~~kkeNi~Nnis--lkSd------~~~llYWi~~GRGe~~eAinIAr~L~D~d--~~~~Al 349 (434)
T COG4499 289 VSYVNLEDLTTTKKENILNNIS--LKSD------DNYLLYWIYSGRGEFKEAINIARNLDDND--LTLLAL 349 (434)
T ss_pred HHHHHCCCCCHHHHHHHHHCCC--CCCC------HHHHHHHHHHCCCCHHHHHHHHHHCCCCH--HHHHHH
T ss_conf 8774003441578998862046--5666------45778999846851788866987178622--599999