HHsearch alignment for GI: 254780421 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=97.65 E-value=0.0028 Score=38.69 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999995110057789999998731268957899999999996302699899999975311464235689999999999
Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218)
Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218)
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll---~~-~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL---AA-QGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHH---HH-HHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
T ss_conf 8877777740555500788755401474549999---99-999999804568899999998436999-746666778999
Q ss_pred HHCCCHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf 9889989999999999835-5899899
Q gi|254780421|r 173 LKFGKVQKAKTIFEELAKD-NNSPFGI 198 (218)
Q Consensus 173 ~~~Gd~~~A~~~y~~i~~~-~~~p~~~ 198 (218)
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 973675677899999998425884466