HHsearch alignment for GI: 254780421 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=97.00 E-value=0.024 Score=32.88 Aligned_cols=143 Identities=16% Similarity=0.085 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999999999998413876---66999999973125520699999999999951--1005778999999873126895789
Q gi|254780421|r 52 IVGENFAQALELFNSNKL---DDARSSFEKILSQDNKLYNPLSNMYIASILVA--KGDTKNAAEIFLKVANDDLAPLAVR 126 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~---~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~--~g~~~~A~~~l~~i~~~~~~~~~~~ 126 (218)
T Consensus 330 ~aL~~~~~A~~~l~~~d~~~l~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~~~~~~~ 409 (512)
T PRK10153 330 AALMLFYQAHHYLNSGDAKSLNKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIVALPGVN 409 (512)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998515663034788999999999999729983899999999999998549888999999999999987332468
Q ss_pred HHHHHH--HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 999999--9996302699899999975311464235689999999999988998999999999983558998
Q gi|254780421|r 127 YAATLQ--AASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPF 196 (218)
Q Consensus 127 ~lA~l~--la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~ 196 (218)
T Consensus 410 ~~~riyeAlAl~al~~~~~~~A~~~L~~~~~~~--~Svl~YILlgK~aEl~G~~~~A~e~Y~~Af~~~~s~~ 479 (512)
T PRK10153 410 VLSRIYEALAVQALVKGDTDEAYQALNKAIELE--MSWLNYVLLGKVAELKGDNRLAADAYSTAFNLRPGEN 479 (512)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 872889999999984799999999998675645--5699999999999964996688999999980388389