HHsearch alignment for GI: 254780421 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.49  E-value=2.1e-06  Score=58.08  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf             99999999951100577899999987312689578999999999963026998999999753114--6423568999999
Q gi|254780421|r   91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEIL  168 (218)
Q Consensus        91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ell  168 (218)
T Consensus         4 ~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP-~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKl   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             789999999853887899999999988687-9876710547999999997339999999999986458998606899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf             999998899899999999998355-899899
Q gi|254780421|r  169 GISALKFGKVQKAKTIFEELAKDN-NSPFGI  198 (218)
Q Consensus       169 g~~~~~~Gd~~~A~~~y~~i~~~~-~~p~~~  198 (218)
T Consensus        83 g~~~~~~g~~~~A~~~l~~V~~~YP~s~aA~  113 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             9999872898899999999985669987889