HHsearch alignment for GI: 254780421 and conserved domain: cd00189
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=98.25 E-value=2.7e-05 Score=51.13 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
T Consensus 2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 899999999984999999999999998599989----999999999998598589999999999869-898999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9998899899999999998355
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
T Consensus 77 ~~~~~~~~~~A~~~~~~al~~~ 98 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999499999999999999749