HHsearch alignment for GI: 254780421 and conserved domain: cd00189

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=97.39  E-value=0.0052  Score=37.03  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999984138766699999997312552069999999999995110057789999998731268957899999999996
Q gi|254780421|r   57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI  136 (218)
Q Consensus        57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~  136 (218)
T Consensus         4 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~   77 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHH
T ss_conf             999999998499999999999999859998--99999999999985985899999999998698989----999999999


Q ss_pred             HHCCCCHHHHHHHHHHHCC
Q ss_conf             3026998999999753114
Q gi|254780421|r  137 LVDTSSYEEISKILQKLSE  155 (218)
Q Consensus       137 ~~~~~~~d~a~~~l~~~~~  155 (218)
T Consensus        78 ~~~~~~~~~A~~~~~~al~   96 (100)
T cd00189          78 YYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHCCCHHHHHHHHHHHHH
T ss_conf             9994999999999999997