HHsearch results for GI: 254780421 and protein with PDBid: 1qqe_A
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.46 E-value=2.9e-05 Score=49.61 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCC--CCHHH
Q ss_conf 9999999998-4138766699999997312----5520699999999999951-1005778999999873126--89578
Q gi|254780421|r 54 GENFAQALEL-FNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVA-KGDTKNAAEIFLKVANDDL--APLAV 125 (218)
Q Consensus 54 s~~y~~al~~-~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~-~g~~~~A~~~l~~i~~~~~--~~~~~ 125 (218)
+..|..+-.. ...+++++|+..+.+..+. +...-+..+...++.++.. .|++++|+..|+..++-.. ..+..
T Consensus 77 a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999876987999999999999877537416899999999899998721099999999999987553688898
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CC---HHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999630269989999997531146--42---356-899999999999889989999999999835
Q gi|254780421|r 126 RYAATLQAASILVDTSSYEEISKILQKLSEP--SN---PMH-QFANEILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 126 ~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~--~~---~~~-~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
..-+...++.++...+++++|+..+...... .. .+. .......|.+++..||...|++.|++....
T Consensus 157 ~~~~~~~la~~~~~~~~y~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~ 228 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999999984369999999999998734134656889999999999999808999999999999975