HHsearch results for GI: 254780421 and protein with PDBid: 3dss_A
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=97.19 E-value=0.0097 Score=34.00 Aligned_cols=119 Identities=6% Similarity=-0.091 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHH---HHH-----HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 669999999731255206999---999-----999999511005778999999873126895789999999999630269
Q gi|254780421|r 70 DDARSSFEKILSQDNKLYNPL---SNM-----YIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS 141 (218)
Q Consensus 70 ~~A~~~l~~l~~~~~~~ya~l---A~l-----~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~ 141 (218)
++|+..+++++...|..+..+ +.+ ..+......|.+++|+..+..++...+.+. ......+++.......
T Consensus 47 ~eAl~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCC
T ss_conf 99999999999888887899999999999704333568888789999999999998889989--9999975888760773
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9899999975311464235689999999999988998999999999983
Q gi|254780421|r 142 SYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 142 ~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+..+++..+......++..........+.+....+....|.+.|++++.
T Consensus 125 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~i~ 173 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5999999999997248345789988999999742462889999999998